Mercurial > repos > nml > staramr
comparison test-data/test1-detailed-summary.tsv @ 17:141afacabcfa draft
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit e752f6e09372d3513de79d85baa619c5f5065303
| author | nml |
|---|---|
| date | Thu, 31 Aug 2023 15:55:49 +0000 |
| parents | 61a3e97aa865 |
| children |
comparison
equal
deleted
inserted
replaced
| 16:4d83eccf5f81 | 17:141afacabcfa |
|---|---|
| 1 Isolate ID Data Data Type Predicted Phenotype %Identity %Overlap HSP Length/Total Length Contig Start End Accession | 1 Isolate ID Data Data Type Predicted Phenotype CGE Predicted Phenotype %Identity %Overlap HSP Length/Total Length Contig Start End Accession |
| 2 16S-rc_gyrA-rc_beta-lactam.fsa ST- (-) MLST | 2 16S-rc_gyrA-rc_beta-lactam.fsa ST- (-) MLST |
| 3 16S-rc_gyrA-rc_beta-lactam.fsa None Plasmid | 3 16S-rc_gyrA-rc_beta-lactam.fsa None Plasmid |
| 4 16S-rc_gyrA-rc_beta-lactam.fsa 16S_rrsD (C1065T) Resistance spectinomycin 99.94 100.0 1544/1544 16S_rrsD 1604 61 | 4 16S-rc_gyrA-rc_beta-lactam.fsa 16S_rrsD (C1065T) Resistance spectinomycin Spectinomycin 99.94 100.0 1544/1544 16S_rrsD 1604 61 |
| 5 16S-rc_gyrA-rc_beta-lactam.fsa blaIMP-42 Resistance ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, meropenem 99.73 100.0 741/741 16S_rrsD 4381 5121 AB753456 | 5 16S-rc_gyrA-rc_beta-lactam.fsa blaIMP-42 Resistance ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, meropenem Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Cefixime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam 99.73 100.0 741/741 16S_rrsD 4381 5121 AB753456 |
| 6 16S-rc_gyrA-rc_beta-lactam.fsa gyrA (A67P) Resistance ciprofloxacin I/R, nalidixic acid 99.96 100.0 2637/2637 16S_rrsD 4317 1681 | 6 16S-rc_gyrA-rc_beta-lactam.fsa gyrA (A67P) Resistance ciprofloxacin I/R, nalidixic acid Nalidixic acid,Ciprofloxacin 99.96 100.0 2637/2637 16S_rrsD 4317 1681 |