Mercurial > repos > nml > staramr
comparison test-data/test1-hits/pointfinder_16S-rc_gyrA-rc_beta-lactam.fsa @ 0:fef5aff062c7 draft
planemo upload for repository https://github.com/phac-nml/staramr commit 8aafd6d7140b7d8aeb097c80fbb7632397ba5e64
| author | nml |
|---|---|
| date | Wed, 06 Jun 2018 14:20:58 -0400 |
| parents | |
| children | 3c09557ac425 |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:fef5aff062c7 |
|---|---|
| 1 >16S_rrsD isolate: 16S-rc_gyrA-rc_beta-lactam.fsa, contig: 16S_rrsD, contig_start: 1604, contig_end: 61, resistance_gene_start: 1, resistance_gene_end: 1544, hsp/length: 1544/1544, pid: 99.94%, plength: 100.00% | |
| 2 AATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAG | |
| 3 TCGAACGGTAACAGGAAGCAGCTTGCTGCTTCGCTGACGAGTGGCGGACGGGTGAGTAAT | |
| 4 GTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTGGCTAATACCGCATA | |
| 5 ACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGG | |
| 6 GATTAGCTTGTTGGTGAGGTAACGGCTCACCAAGGCGACGATCCCTAGCTGGTCTGAGAG | |
| 7 GATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGG | |
| 8 GAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTT | |
| 9 CGGGTTGTAAAGTACTTTCAGCGGGGAGGAAGGTGTTGTGGTTAATAACCGCAGCAATTG | |
| 10 ACGTTACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGG | |
| 11 GTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTCTGTCAAGTCGG | |
| 12 ATGTGAAATCCCCGGGCTCAACCTGGGAACTGCATTCGAAACTGGCAGGCTTGAGTCTTG | |
| 13 TAGAGGGGGGTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCG | |
| 14 GTGGCGAAGGCGGCCCCCTGGACAAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAA | |
| 15 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGTCTACTTGGAGGTTGTGCCC | |
| 16 TTGAGGCGTGGCTTCCGGAGCTAACGCGTTAAGTAGACCGCCTGGGGAGTACGGCCGCAA | |
| 17 GGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATT | |
| 18 CGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCACAGAACTTTCCAGAGATGGAT | |
| 19 TGGTGCCTTCGGGAACTGTGAGACAGGTGCTGCATGGCTGTCGTTAGCTCGTGTTGTGAA | |
| 20 ATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCCTTTGTTGCCAGCGATTAGGTC | |
| 21 GGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCA | |
| 22 TCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGA | |
| 23 CCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTCTGCAACT | |
| 24 CGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTT | |
| 25 CCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTA | |
| 26 GCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAAC | |
| 27 AAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCT | |
| 28 >gyrA isolate: 16S-rc_gyrA-rc_beta-lactam.fsa, contig: 16S_rrsD, contig_start: 4317, contig_end: 1681, resistance_gene_start: 1, resistance_gene_end: 2637, hsp/length: 2637/2637, pid: 99.96%, plength: 100.00% | |
| 29 ATGAGCGACCTTGCGAGAGAAATTACACCGGTCAACATTGAGGAAGAGCTGAAAAGCTCC | |
| 30 TATCTGGATTATGCGATGTCGGTCATTGTTGGCCGTGCGCTGCCGGATGTCCGAGATGGC | |
| 31 CTGAAGCCGGTACACCGTCGCGTACTTTACGCCATGAACGTATTGGGCAATGACTGGAAC | |
| 32 AAAGCCTATAAAAAATCTCCCCGTGTCGTTGGTGACGTAATCGGTAAATACCATCCCCAC | |
| 33 GGCGATTCCGCAGTGTATGACACCATCGTTCGTATGGCGCAGCCATTCTCGCTGCGTTAC | |
| 34 ATGCTGGTGGATGGTCAGGGTAACTTCGGTTCTATTGACGGCGACTCCGCGGCGGCAATG | |
| 35 CGTTATACGGAGATCCGTCTGGCGAAAATCGCCCACGAACTGATGGCCGATCTCGAAAAA | |
| 36 GAGACGGTGGATTTCGTGGATAACTATGACGGTACGGAAAAAATTCCGGACGTCATGCCG | |
| 37 ACCAAAATTCCGAATCTGCTGGTGAACGGTTCTTCCGGTATCGCAGTAGGTATGGCGACG | |
| 38 AATATCCCGCCGCACAACCTGACGGAAGTGATTAACGGCTGCCTGGCGTATATCGACAAC | |
| 39 GAAGACATCAGCATTGAAGGGCTGATGGAACATATTCCGGGGCCGGACTTCCCGACCGCC | |
| 40 GCGATCATCAACGGTCGTCGTGGTATCGAAGAAGCCTACCGTACCGGTCGTGGCAAAGTG | |
| 41 TACATTCGCGCCCGCGCGGAAGTTGAAGCTGACGCGAAAACGGGCCGTGAAACCATCATC | |
| 42 GTCCATGAAATTCCCTATCAGGTGAACAAAGCGCGCCTGATCGAGAAAATCGCCGAGCTG | |
| 43 GTGAAAGATAAACGCGTGGAAGGCATCAGCGCGCTGCGTGACGAATCCGACAAAGACGGG | |
| 44 ATGCGCATCGTGATTGAAGTGAAACGCGATGCGGTGGGCGAGGTGGTGCTTAATAATCTC | |
| 45 TACTCCCAGACCCAGCTACAGGTTTCCTTCGGTATTAACATGGTGGCGCTGCATCACGGC | |
| 46 CAGCCGAAGATCATGAACCTGAAAGACATCATTTCAGCGTTCGTGCGCCACCGCCGTGAA | |
| 47 GTGGTGACGCGTCGTACTATTTTTGAACTGCGTAAAGCCCGTGACCGCGCGCATATCCTT | |
| 48 GAAGCTCTGGCGATTGCGCTGGCTAACATCGACCCGATTATCGAACTGATTCGCCGCGCG | |
| 49 CCAACGCCGGCAGAAGCAAAAGCGGCGCTGATTTCGCGTCCGTGGGATCTGGGCAACGTT | |
| 50 GCTGCGATGCTGGAGCGCGCTGGTGATGACGCTGCGCGTCCGGAATGGCTGGAGCCAGAA | |
| 51 TTTGGCGTGCGTGACGGTCAGTATTACCTGACTGAGCAGCAGGCGCAGGCGATTCTGGAT | |
| 52 CTGCGTTTGCAGAAACTGACCGGCCTGGAGCATGAAAAACTGCTCGACGAATACAAAGAG | |
| 53 TTGCTGGAGCAGATTGCTGAACTGCTGCACATTCTGGGCAGCGCCGATCGCCTGATGGAA | |
| 54 GTGATCCGCGAAGAGATGGAGTTAATTCGCGATCAGTTCGGCGATGAGCGTCGTACCGAA | |
| 55 ATCACCGCCAACAGCGCCGATATTAATATCGAAGATCTGATTAGCCAGGAAGATGTTGTC | |
| 56 GTGACGCTGTCTCACCAGGGTTACGTCAAATATCAACCGCTGACGGATTACGAAGCGCAA | |
| 57 CGTCGTGGTGGGAAAGGTAAATCTGCCGCGCGTATTAAAGAAGAAGACTTTATCGACCGC | |
| 58 CTGCTGGTGGCCAACACCCATGACACCATCCTCTGCTTCTCCAGCCGGGGCCGTCTGTAC | |
| 59 TGGATGAAGGTCTATCAGTTGCCGGAAGCCAGCCGCGGCGCGCGCGGTCGTCCGATCGTT | |
| 60 AACCTGCTGCCGCTGGAAGCCAACGAACGTATCACCGCGATTCTGCCGGTTCGTGAATAC | |
| 61 GAAGAAGGCGTCAACGTCTTTATGGCGACCGCCAGCGGTACCGTGAAGAAAACGGCGCTG | |
| 62 ACCGAATTCAGCCGTCCGCGTTCCGCCGGTATTATCGCGGTGAACCTCAACGACGGCGAC | |
| 63 GAGCTGATTGGCGTTGACCTGACTTCTGGTTCTGACGAAGTCATGCTGTTCTCGGCCGCG | |
| 64 GGTAAAGTGGTGCGCTTCAAAGAAGACGCCGTCCGTGCGATGGGGCGTACCGCGACCGGT | |
| 65 GTGCGCGGTATTAAGCTGGCGGGAGACGATAAAGTCGTCTCTCTGATCATCCCACGCGGC | |
| 66 GAAGGCGCTATTCTGACCGTAACGCAAAACGGCTACGGGAAGCGTACCGCAGCGGACGAG | |
| 67 TACCCGACCAAGTCTCGTGCGACGCAGGGCGTTATCTCTATCAAAGTGACCGAGCGCAAC | |
| 68 GGTTCCGTTGTCGGTGCGGTACAGGTAGACGATTGCGACCAGATCATGATGATCACGGAT | |
| 69 GCCGGTACTCTGGTGCGTACCCGAGTGTCCGAGATCAGCGTCGTGGGACGTAATACCCAG | |
| 70 GGCGTTATCCTTATCCGCACGGCGGAAGATGAAAACGTGGTGGGTCTGCAACGCGTTGCT | |
| 71 GAACCGGTAGATGACGAAGAACTCGACGCTATCGACGGCAGCGTGGCGGAAGGGGATGAG | |
| 72 GATATCGCCCCGGAAGCGGAAAGCGATGACGACGTTGCGGATGACGCTGACGAGTAA |