Mercurial > repos > nml > staramr

diff test-data/test1-detailed-summary.tsv @ 9:61a3e97aa865 draft

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"planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit 07b1134fbf48f0f94e6060b861651e1ab48cde71"
author nml
date Mon, 30 Sep 2019 12:45:02 -0400
parents f1adc47e017a
children 141afacabcfa
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--- a/test-data/test1-detailed-summary.tsv	Mon Jun 24 15:21:42 2019 -0400
+++ b/test-data/test1-detailed-summary.tsv	Mon Sep 30 12:45:02 2019 -0400
@@ -1,5 +1,6 @@
-Isolate ID	Gene/Plasmid	Predicted Phenotype	%Identity	%Overlap	HSP Length/Total Length	Contig	Start	End	Accession	Data Type
-16S-rc_gyrA-rc_beta-lactam.fsa	None									Plasmid
-16S-rc_gyrA-rc_beta-lactam.fsa	16S_rrsD (C1065T)	spectinomycin	99.94	100.0	1544/1544	16S_rrsD	1604	61		Resistance
-16S-rc_gyrA-rc_beta-lactam.fsa	blaIMP-42	ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, meropenem	99.73	100.0	741/741	16S_rrsD	4381	5121	AB753456	Resistance
-16S-rc_gyrA-rc_beta-lactam.fsa	gyrA (A67P)	ciprofloxacin I/R, nalidixic acid	99.96	100.0	2637/2637	16S_rrsD	4317	1681		Resistance
+Isolate ID	Data	Data Type	Predicted Phenotype	%Identity	%Overlap	HSP Length/Total Length	Contig	Start	End	Accession
+16S-rc_gyrA-rc_beta-lactam.fsa	ST- (-)	MLST								
+16S-rc_gyrA-rc_beta-lactam.fsa	None	Plasmid								
+16S-rc_gyrA-rc_beta-lactam.fsa	16S_rrsD (C1065T)	Resistance	spectinomycin	99.94	100.0	1544/1544	16S_rrsD	1604	61	
+16S-rc_gyrA-rc_beta-lactam.fsa	blaIMP-42	Resistance	ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, meropenem	99.73	100.0	741/741	16S_rrsD	4381	5121	AB753456
+16S-rc_gyrA-rc_beta-lactam.fsa	gyrA (A67P)	Resistance	ciprofloxacin I/R, nalidixic acid	99.96	100.0	2637/2637	16S_rrsD	4317	1681