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view test-data/test1-pointfinder.tsv @ 17:141afacabcfa draft

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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit e752f6e09372d3513de79d85baa619c5f5065303
author nml
date Thu, 31 Aug 2023 15:55:49 +0000
parents 4d83eccf5f81
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Isolate ID	Gene	Predicted Phenotype	CGE Predicted Phenotype	Type	Position	Mutation	%Identity	%Overlap	HSP Length/Total Length	Contig	Start	End	Pointfinder Position	CGE Notes	CGE Required Mutation	CGE Mechanism	CGE PMID
16S-rc_gyrA-rc_beta-lactam.fsa	16S_rrsD (C1065T)	spectinomycin	Spectinomycin	nucleotide	1065	C -> T	99.94	100.00	1544/1544	16S_rrsD	1604	61	C1065T			Target modification	12402084
16S-rc_gyrA-rc_beta-lactam.fsa	gyrA (A67P)	ciprofloxacin I/R, nalidixic acid	Nalidixic acid,Ciprofloxacin	codon	67	GCC -> CCC (A -> P)	99.96	100.00	2637/2637	16S_rrsD	4317	1681	A67P		gyrA_G81C.S.H.D	Target modification	7492118