# HG changeset patch
# User nml
# Date 1561404102 14400
# Node ID da787fc8b740dcd54e3369879912ec725c2ae836
# Parent  f1adc47e017a9a812bdcc91d2125512970baf87b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit f1641993d71fc04fadf20753a63cc72a412f4af5

diff -r f1adc47e017a -r da787fc8b740 staramr_search.xml
--- a/staramr_search.xml	Thu May 16 15:29:53 2019 -0400
+++ b/staramr_search.xml	Mon Jun 24 15:21:42 2019 -0400
@@ -12,8 +12,8 @@
 
         #set $named_genomes = ''
         #for $genome in $genomes
-            #set $_named_genome = re.sub(r'(\s|\(|\))', '_', '"{}.fasta"'.format($genome.element_identifier))
-            ln -s "$genome" $_named_genome &&
+            #set $_named_genome = re.sub(r'(\s|\(|\)|\/)', '_', '"{}.fasta"'.format($genome.element_identifier))
+            ln -s '$genome' $_named_genome &&
             #set $named_genomes = $named_genomes + ' ' + $_named_genome
         #end for
 
@@ -353,7 +353,7 @@
     plasmidfinder_db_commit       = 81919954cbedaff39056610ab584ab4c06011ed8
     plasmidfinder_db_date         = Tue, 20 Nov 2018 08:51
     pointfinder_gene_drug_version = 050218
-    resfinder_gene_drug_version   = 050218.1 
+    resfinder_gene_drug_version   = 050218.1
 
 results.xlsx
 ````````````
@@ -363,7 +363,7 @@
 BLAST Hits
 ``````````
 
-The dataset collection  **hits** stores fasta files of the specific blast hits. 
+The dataset collection  **hits** stores fasta files of the specific blast hits.
 
 Galaxy wrapper written by Aaron Petkau at the National Microbiology Laboratory, Public Health Agency of Canada.