Mercurial > repos > nml > suite_snvphyl_1_1_0

diff repository_dependencies.xml @ 0:1f0f9b1b5580 draft default tip

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"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
author nml
date Tue, 27 Aug 2019 12:34:11 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/repository_dependencies.xml	Tue Aug 27 12:34:11 2019 -0400
@@ -0,0 +1,21 @@
+<?xml version="1.0" ?>
+<repositories description="A suite of tools associated with SNVphyl pipeline">
+    <repository changeset_revision="9ea374bb0350" name="regex_find_replace" owner="jjohnson" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="156b60c1530f" name="freebayes" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="e013b0d6b1ea" name="bcftools_mpileup" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="338a2860a20c" name="bcftools_view" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="4fa18320d29b" name="bcftools_call" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="850e213bee26" name="phyml" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="51ad86498414" name="smalt" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="93ea196681c8" name="filter_vcf" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="317ba2ee501d" name="snv_matrix" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="7f27672ff880" name="find_repeats" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="7d66bf698382" name="vcf2snvalignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="b42c82186e85" name="consolidate_vcfs" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="12f1714f7716" name="verify_map" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="89c3ba37711c" name="filter_stats" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="c27b4346352f" name="filter_density" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="33151a38533a" name="collapse_collections" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="e2cec726fa79" name="positions2snv_alignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="bf542eece94a" name="positions2snv_invariant_alignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+</repositories>
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