Mercurial > repos > nml > suite_snvphyl_1_2_2

diff repository_dependencies.xml @ 0:77a9422303ce draft default tip

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"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
author nml
date Thu, 03 Sep 2020 17:24:14 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/repository_dependencies.xml	Thu Sep 03 17:24:14 2020 +0000
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+<?xml version="1.0" ?>
+<repositories description="A suite of tools associated with SNVphyl pipeline">
+    <repository name="regex_find_replace" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ae8c4b2488e7"/>
+    <repository name="freebayes" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ef2c525bd8cd"/>
+    <repository name="bcftools_mpileup" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f65383c7ed49"/>
+    <repository name="bcftools_view" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c4a9b38b435d"/>
+    <repository name="bcftools_call" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5801eff9ac7e"/>
+    <repository name="phyml" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2bf47d57ebb5"/>
+    <repository name="smalt" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5ba47ab90254"/>
+    <repository name="filter_vcf" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="48922d9ca355"/>
+    <repository name="snv_matrix" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4d3e3d7aa0c4"/>
+    <repository name="find_repeats" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7e6be57de1a0"/>
+    <repository name="vcf2snvalignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d2096d0c149e"/>
+    <repository name="consolidate_vcfs" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4c249c0aebad"/>
+    <repository name="bundle_collections" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="705ebd286b57"/>
+    <repository name="verify_map" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="80b7566e62ec"/>
+    <repository name="filter_stats" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2fbea749a1d1"/>
+    <repository name="filter_density" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c9a43abcd993"/>
+    <repository name="collapse_collections" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="90981f86000f"/>
+    <repository name="positions2snv_alignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1cf81ca17e9d"/>
+    <repository name="positions2snv_invariant_alignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5dc704146cc6"/>
+</repositories>
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