Mercurial > repos > nml > tree_relabeler
comparison tree_relabeler.xml @ 1:267858c28a34 draft
planemo upload for repository https://github.com/phac-nml/galaxy_tools/blob/master/tools/tree_relabeler commit afb05efaf5c7808594bab3473ad6cc958523fc22
| author | nml |
|---|---|
| date | Thu, 20 Jun 2019 12:45:02 -0400 |
| parents | 02bc0d7d40b5 |
| children | 41ada87567a2 |
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| 0:02bc0d7d40b5 | 1:267858c28a34 |
|---|---|
| 1 <tool id="tree_relabel" name="Tree Relabeler" version="1.0.0"> | 1 <tool id="tree_relabel" name="Tree Relabeler" version="1.0.1"> |
| 2 <description>Relabels the tips of a newick formatted tree.</description> | 2 <description>Relabels the tips of a newick formatted tree.</description> |
| 3 | 3 |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="1.7.2">perl-bioperl</requirement> | 5 <requirement type="package" version="1.7.2">perl-bioperl</requirement> |
| 6 <requirement type="package" version="2.49">perl-getopt-long</requirement> | 6 <requirement type="package" version="2.49">perl-getopt-long</requirement> |
| 14 <command interpreter="perl"> | 14 <command interpreter="perl"> |
| 15 nml_tree_relabeler.pl -i $treefile -t $tabfile -o $output -d $delim | 15 nml_tree_relabeler.pl -i $treefile -t $tabfile -o $output -d $delim |
| 16 </command> | 16 </command> |
| 17 | 17 |
| 18 <inputs> | 18 <inputs> |
| 19 <param name="treefile" type="data" format="txt" label="The newick formated tree file to be relabeled:" optional="false"/> | 19 <param name="treefile" type="data" format="nhx" label="The newick formated tree file to be relabeled:" optional="false"/> |
| 20 <param name="tabfile" type="data" format="txt" label="The tab separated file containing the current labels and the info to be added to the labels" optional="false"/> | 20 <param name="tabfile" type="data" format="txt" label="The tab separated file containing the current labels and the info to be added to the labels" optional="false"/> |
| 21 <param name="delim" type="text" label="Delimiter for new tip labels (space, _, etc)" optional="true" help="If left blank, labels of updated tips will be separated by spaces."/> | 21 <param name="delim" type="text" label="Delimiter for new tip labels (space, _, etc)" optional="true" help="If left blank, labels of updated tips will be separated by spaces."/> |
| 22 </inputs> | 22 </inputs> |
| 23 | 23 |
| 24 <outputs> | 24 <outputs> |