Mercurial > repos > nml > vcf2snvalignment
comparison vcf2snvalignment.xml @ 1:d2096d0c149e draft default tip
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
| author | nml |
|---|---|
| date | Tue, 23 Jun 2020 10:27:53 -0400 |
| parents | 7d66bf698382 |
| children |
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| 0:7d66bf698382 | 1:d2096d0c149e |
|---|---|
| 1 <tool id="vcf2snvalignment" name="VCF 2 snvalignment" version ="1.8.2"> | 1 <tool id="vcf2snvalignment" name="VCF 2 snvalignment" version="@VERSION@+galaxy1"> |
| 2 <description>create a snv alignment from multiple merged VCF files</description> | 2 <description>create a snv alignment from multiple merged VCF files</description> |
| 3 <requirements> | 3 <macros> |
| 4 <requirement type="package" version="1.8.2">snvphyl-tools</requirement> | 4 <import>macros.xml</import> |
| 5 </requirements> | 5 </macros> |
| 6 <expand macro="requirements"/> | |
| 6 <command detect_errors="exit_code"><![CDATA[ | 7 <command detect_errors="exit_code"><![CDATA[ |
| 7 | 8 |
| 8 | 9 |
| 9 #for $f in $vcf_collection.keys# | 10 #for $f in $vcf_collection.keys# |
| 10 #set $name = str($vcf_collection[$f]).split('/')[-1] | 11 #set $name = str($vcf_collection[$f]).split('/')[-1] |
| 87 </tests> | 88 </tests> |
| 88 | 89 |
| 89 <help> | 90 <help> |
| 90 Produces an alignment of SNVs from the merged variant/non-variant calls produced from the "consolidate_vcfs" tool. | 91 Produces an alignment of SNVs from the merged variant/non-variant calls produced from the "consolidate_vcfs" tool. |
| 91 </help> | 92 </help> |
| 92 | 93 <expand macro="citations"/> |
| 93 <citations> | |
| 94 </citations> | |
| 95 | |
| 96 </tool> | 94 </tool> |