# HG changeset patch
# User nml
# Date 1592922493 14400
# Node ID 80b7566e62ec8e6de514395fefe211d5ce92c550
# Parent  12f1714f7716aa4395b85605e80a0e6f9353980c
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"

diff -r 12f1714f7716 -r 80b7566e62ec macros.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Tue Jun 23 10:28:13 2020 -0400
@@ -0,0 +1,16 @@
+<macros>
+  <token name="@VERSION@">1.8.2</token>
+
+  <xml name="requirements">
+    <requirements>
+      <requirement type="package" version="@VERSION@">snvphyl-tools</requirement>
+      <yield/>
+    </requirements>
+  </xml>
+  <xml name="citations">
+    <citations>
+      <citation type="doi">10.1099/mgen.0.000116</citation>
+      <yield/> 
+    </citations>
+  </xml>
+</macros>
diff -r 12f1714f7716 -r 80b7566e62ec verify_map.xml
--- a/verify_map.xml	Tue Aug 27 12:33:47 2019 -0400
+++ b/verify_map.xml	Tue Jun 23 10:28:13 2020 -0400
@@ -1,8 +1,9 @@
-<tool id="verify_map" name="Verify Mapping Quality" version="1.8.2">
+<tool id="verify_map" name="Verify Mapping Quality" version="@VERSION@+galaxy1">
 	<description>Checks the mapping quality of all BAM files generated in the core SNV pipeline.</description>
-	<requirements>
-		<requirement type="package" version="1.8.2">snvphyl-tools</requirement>
-	</requirements>
+	<macros>
+		<import>macros.xml</import>
+	</macros>
+	<expand macro="requirements"/>
 	<command detect_errors="exit_code">
 		verify_mapping_quality.pl
  		#for $f in $bams.keys# --bam "$f=$bams[$f]" #end for#
@@ -60,5 +61,5 @@
   - min-map - The minimum perecent coverage required in each BAM file.
 
 	</help>
-	<citations/>
+	<expand macro="citations"/>
 </tool>