Mercurial > repos > ntino > galaxy_to_biocompute_object
comparison jsonParse.py @ 3:ac421dc9bda8 draft default tip
Uploaded
author | ntino |
---|---|
date | Mon, 06 May 2019 20:20:59 -0400 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
2:26da5281cbf8 | 3:ac421dc9bda8 |
---|---|
1 #!/usr/bin/env python | |
2 | |
3 | |
4 import json, sys | |
5 | |
6 with open(sys.argv[1]) as file: | |
7 data = json.load(file) | |
8 tool = {} | |
9 for i in range(len(data['steps'].keys())): | |
10 tool[i] = {} | |
11 | |
12 print data['steps'][str(i)]['id'] | |
13 tool[i]['step_number'] = data['steps'][str(i)]['id'] | |
14 print data['steps'][str(i)]['name'] | |
15 tool[i]['name'] = data['steps'][str(i)]['name'] | |
16 print data['steps'][str(i)]['tool_version'] | |
17 tool[i]['tool_version'] = data['steps'][str(i)]['tool_version'] | |
18 print data['steps'][str(i)]['tool_id'] | |
19 tool[i]['tool_id'] = data['steps'][str(i)]['tool_id'] | |
20 tool[i]['input_list'] = [] | |
21 for step in data['steps'][str(i)]['inputs']: | |
22 print step['name'], step['description'] | |
23 a = {'name': step['name'], 'description': step['description']} | |
24 tool[i]['input_list'].append(a) | |
25 print '' | |
26 tool[i]['output_list'] = [] | |
27 for step in data['steps'][str(i)]['outputs']: | |
28 print step['name'], step['type'] | |
29 a = {'name': str(step['name']+'.'+step['type']), 'type': step['type']} | |
30 # tool[i]['output_list']['address'] = | |
31 tool[i]['output_list'].append(a) | |
32 print '\n' | |
33 json_data = json.dumps(tool) | |
34 | |
35 for i in tool: | |
36 print json.dumps(tool[i]) | |
37 | |
38 print type(tool.keys()) | |
39 | |
40 with open(sys.argv[2], 'w') as file: | |
41 file.write('[') | |
42 for i in tool.keys(): | |
43 file.write(json.dumps(tool[i], sort_keys=True, indent=4)) | |
44 if i == tool.keys()[-1]: continue | |
45 else: file.write(',') | |
46 file.write(']') | |
47 |