Mercurial > repos > nturaga > minfi_analyze_tcga
comparison help/help-scripts/.Rhistory @ 0:8b26eeb2da29 draft
planemo upload commit fb90aafc93e5e63acfcdac4c27cfd865cdf06c5a-dirty
| author | nturaga |
|---|---|
| date | Tue, 19 Apr 2016 11:11:16 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:8b26eeb2da29 |
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| 1 packageExpand = function(packagelist,fl) { | |
| 2 res = NULL | |
| 3 for (i in c(1:length(packagelist))) { | |
| 4 s = packagelist[i] | |
| 5 ls = nchar(s) | |
| 6 spos = which(substr(fl,1,ls) == s,arr.ind=T) | |
| 7 lspos = length(spos) | |
| 8 if (lspos > 0) | |
| 9 { | |
| 10 fullname = fl[spos] | |
| 11 if (grepl('*.gz',fullname)) { | |
| 12 row = paste(ps,fullname,pe,sep='') | |
| 13 res = append(res,row) | |
| 14 } | |
| 15 } | |
| 16 } | |
| 17 return(res) | |
| 18 } | |
| 19 getPackages = function(packs) | |
| 20 { | |
| 21 packages = unlist(tools::package_dependencies(packs, available.packages(), | |
| 22 which=c("Depends", "Imports"), recursive=TRUE)) | |
| 23 packages = union(packs, packages) | |
| 24 packages | |
| 25 } | |
| 26 packageExpand(c("minfi")) |