Mercurial > repos > nturaga > minfi_analyze_tcga

diff minfi_pipeline.R @ 1:3cd8ea4f7079 draft default tip

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planemo upload commit fb90aafc93e5e63acfcdac4c27cfd865cdf06c5a-dirty
author nturaga
date Tue, 19 Apr 2016 12:21:01 -0400
parents 8b26eeb2da29
children
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--- a/minfi_pipeline.R	Tue Apr 19 11:11:16 2016 -0400
+++ b/minfi_pipeline.R	Tue Apr 19 12:21:01 2016 -0400
@@ -4,6 +4,8 @@
 # we need that to not crash galaxy with an UTF8 error on German LC settings.
 loc <- Sys.setlocale("LC_MESSAGES", "en_US.UTF-8")
 
+install.packages('getopt', repos='http://cran.us.r-project.org')
+
 library("getopt")
 options(stringAsfactors = FALSE, useFancyQuotes = FALSE)
 args <- commandArgs(trailingOnly = TRUE)