annotate tool_dependencies.xml @ 17:3c5dd2c0ecf1 draft

planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit d37bfc66641e4ad9af7f3016132683ff809da464-dirty

<?xml version="1.0"?>
<tool_dependency>
    <package name="libcurl" version="7.35">
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    </package>
    <package name="R" version="3.2.1">
        <repository changeset_revision="7289a736da57" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="minfi" version="1.16.0">
        <install version="1.0">
            <actions>
                <action type="setup_r_environment">
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                        <package name="libcurl" version="7.35" />
                    </repository>
                    <repository changeset_revision="7289a736da57" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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                    <package>https://depot.galaxyproject.org/package/noarch/iterators_1.0.8.tar.gz</package>
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                    <package>https://depot.galaxyproject.org/package/noarch/matrixStats_0.14.2.tar.gz</package>
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                    <package>https://depot.galaxyproject.org/package/noarch/rngtools_1.2.4.tar.gz</package>
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                    <package>https://depot.galaxyproject.org/package/noarch/futile.logger_1.4.1.tar.gz</package>
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                    <package>https://bioconductor.org/packages/release/bioc/src/contrib/SummarizedExperiment_1.0.2.tar.gz</package>
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                    <package>https://depot.galaxyproject.org/package/noarch/RColorBrewer_1.1-2.tar.gz</package>
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                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/multtest_2.26.0.tar.gz</package>
                    <package>https://www.bioconductor.org/packages/release/bioc/src/contrib/siggenes_1.44.0.tar.gz</package>
                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/preprocessCore_1.32.0.tar.gz</package>
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                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/genefilter_1.52.1.tar.gz</package>
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                    <package>https://depot.galaxyproject.org/package/noarch/reshape_0.8.5.tar.gz</package>
                    <package>https://depot.galaxyproject.org/package/noarch/quadprog_1.5-5.tar.gz</package>
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                    <package>https://depot.galaxyproject.org/package/noarch/munsell_0.4.3.tar.gz</package>
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                    <package>https://depot.galaxyproject.org/package/noarch/cluster_2.0.4.tar.gz</package>
                    <package>https://depot.galaxyproject.org/package/noarch/gridBase_0.4-7.tar.gz</package>
                    <package>https://depot.galaxyproject.org/package/noarch/doParallel_1.0.10.tar.gz</package>
                    <package>https://depot.galaxyproject.org/package/noarch/NMF_0.20.6.tar.gz</package>
                    <package>https://depot.galaxyproject.org/package/noarch/irlba_2.0.0.tar.gz</package>
                    <package>https://depot.galaxyproject.org/package/noarch/igraph_1.0.1.tar.gz</package>
                    <package>https://depot.galaxyproject.org/package/noarch/mixOmics_5.2.0.tar.gz</package>
                    <package>https://bioarchive.galaxyproject.org/minfi_1.16.0.tar.gz</package>
                    <package>https://depot.galaxyproject.org/package/noarch/getopt_1.20.0.tar.gz</package>
                    <package>https://bioconductor.org/packages/release/data/experiment/src/contrib/FlowSorted.Blood.450k_1.8.0.tar.gz</package>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>