Mercurial > repos > nturaga > package_minfi_1_16_0
annotate tool_dependencies.xml @ 14:4c23fc6dee01 draft
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
author | nturaga |
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date | Tue, 19 Apr 2016 17:01:10 -0400 |
parents | 8b8c10ede5e3 |
children | a207166bbeb2 |
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f453b1c037bc
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit fb90aafc93e5e63acfcdac4c27cfd865cdf06c5a-dirty
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1 <?xml version="1.0"?> |
f453b1c037bc
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit fb90aafc93e5e63acfcdac4c27cfd865cdf06c5a-dirty
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2 <tool_dependency> |
12
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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3 <package name="libcurl" version="7.35"> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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4 <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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5 </package> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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6 <package name="R" version="3.2.1"> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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7 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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8 </package> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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9 <package name="r-getopt" version="1.20.0"> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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10 <repository changeset_revision="712cb82311a8" name="package_r_3_2_1_getopt_1_20_0" owner="bebatut" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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11 </package> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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12 <package name="minfi" version="1.16.0"> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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13 <install version="1.0"> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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14 <actions> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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15 <action type="setup_r_environment"> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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16 <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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17 <package name="libcurl" version="7.35" /> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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18 </repository> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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19 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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20 <package name="R" version="3.2.1" /> |
fb9a9cd3e360
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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21 </repository> |
13
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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22 <package>https://bioconductor.org/packages/release/bioc/src/contrib/BiocGenerics_0.16.1.tar.gz</package> |
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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23 <package>https://bioarchive.galaxyproject.org/Biobase_2.29.1.tar.gz</package> |
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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24 <package>http://bioconductor.org/packages/release/bioc/src/contrib/S4Vectors_0.8.11.tar.gz</package> |
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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25 <package>http://bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.4.8.tar.gz</package> |
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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26 <package>https://bioarchive.galaxyproject.org/GenomeInfoDb_1.6.0.tar.gz</package> |
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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27 <package>https://bioarchive.galaxyproject.org/zlibbioc_1.16.0.tar.gz</package> |
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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28 <package>https://bioarchive.galaxyproject.org/XVector_0.10.0.tar.gz</package> |
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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29 <package>https://bioconductor.org/packages/release/bioc/src/contrib/GenomicRanges_1.22.4.tar.gz</package> |
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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30 <package>https://bioarchive.galaxyproject.org/Biostrings_2.38.0.tar.gz</package> |
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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31 <package>https://cran.r-project.org/src/contrib/iterators_1.0.8.tar.gz</package> |
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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32 <package>https://cran.r-project.org/src/contrib/foreach_1.4.3.tar.gz</package> |
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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33 <package>https://cran.r-project.org/src/contrib/locfit_1.5-9.1.tar.gz</package> |
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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34 <package>https://cran.r-project.org/src/contrib/Archive/matrixStats/matrixStats_0.14.2.tar.gz</package> |
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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35 <package>https://bioarchive.galaxyproject.org/limma_3.26.0.tar.gz</package> |
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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36 <package>https://cran.r-project.org/src/contrib/registry_0.3.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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37 <package>https://cran.r-project.org/src/contrib/digest_0.6.9.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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38 <package>https://cran.r-project.org/src/contrib/stringi_1.0-1.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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39 <package>https://cran.r-project.org/src/contrib/magrittr_1.5.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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40 <package>https://cran.r-project.org/src/contrib/stringr_1.0.0.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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41 <package>https://cran.r-project.org/src/contrib/Archive/xtable/xtable_1.7-4.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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42 <package>https://cran.r-project.org/src/contrib/pkgmaker_0.22.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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43 <package>https://cran.r-project.org/src/contrib/rngtools_1.2.4.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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44 <package>https://cran.r-project.org/src/contrib/doRNG_1.6.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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45 <package>https://cran.r-project.org/src/contrib/DBI_0.3.1.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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46 <package>https://cran.r-project.org/src/contrib/RSQLite_1.0.0.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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47 <package>https://bioconductor.org/packages/release/bioc/src/contrib/AnnotationDbi_1.32.3.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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48 <package>https://cran.r-project.org/src/contrib/bitops_1.0-6.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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49 <package>https://cran.r-project.org/src/contrib/Archive/RCurl/RCurl_1.95-4.7.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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50 <package>https://cran.r-project.org/src/contrib/Archive/XML/XML_3.98-1.3.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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51 <package>https://cran.r-project.org/src/contrib/lambda.r_1.1.7.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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52 <package>https://cran.r-project.org/src/contrib/futile.options_1.0.0.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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53 <package>https://cran.r-project.org/src/contrib/futile.logger_1.4.1.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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54 <package>https://cran.r-project.org/src/contrib/Archive/snow/snow_0.3-13.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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55 <package>https://bioarchive.galaxyproject.org/BiocParallel_1.3.54.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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56 <package>https://bioarchive.galaxyproject.org/Rsamtools_1.22.0.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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57 <package>https://bioconductor.org/packages/release/bioc/src/contrib/SummarizedExperiment_1.0.2.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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58 <package>https://bioarchive.galaxyproject.org/GenomicAlignments_1.6.0.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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59 <package>https://bioarchive.galaxyproject.org/rtracklayer_1.30.0.tar.gz</package> |
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60 <package>https://bioconductor.org/packages/release/bioc/src/contrib/biomaRt_2.26.1.tar.gz</package> |
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61 <package>https://bioconductor.org/packages/release/bioc/src/contrib/GenomicFeatures_1.22.13.tar.gz</package> |
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62 <package>https://bioarchive.galaxyproject.org/bumphunter_1.10.0.tar.gz</package> |
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63 <package>https://cran.r-project.org/src/contrib/beanplot_1.2.tar.gz</package> |
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64 <package>https://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package> |
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65 <package>https://cran.r-project.org/src/contrib/nor1mix_1.2-1.tar.gz</package> |
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66 <package>http://bioconductor.org/packages/release/bioc/src/contrib/multtest_2.26.0.tar.gz</package> |
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67 <package>https://www.bioconductor.org/packages/release/bioc/src/contrib/siggenes_1.44.0.tar.gz</package> |
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68 <package>http://bioconductor.org/packages/release/bioc/src/contrib/preprocessCore_1.32.0.tar.gz</package> |
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69 <package>https://cran.r-project.org/src/contrib/base64_1.1.tar.gz</package> |
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70 <package>http://bioconductor.org/packages/release/bioc/src/contrib/illuminaio_0.12.0.tar.gz</package> |
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71 <package>https://cran.r-project.org/src/contrib/Archive/mclust/mclust_5.0.2.tar.gz</package> |
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72 <package>https://bioarchive.galaxyproject.org/annotate_1.48.0.tar.gz</package> |
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73 <package>http://bioconductor.org/packages/release/bioc/src/contrib/genefilter_1.52.1.tar.gz</package> |
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74 <package>https://cran.r-project.org/src/contrib/Archive/Rcpp/Rcpp_0.12.1.tar.gz</package> |
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75 <package>https://cran.r-project.org/src/contrib/plyr_1.8.3.tar.gz</package> |
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76 <package>https://cran.r-project.org/src/contrib/reshape_0.8.5.tar.gz</package> |
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77 <package>https://cran.r-project.org/src/contrib/quadprog_1.5-5.tar.gz</package> |
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78 <package>https://bioarchive.galaxyproject.org/GEOquery_2.35.7.tar.gz</package> |
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79 <package>https://cran.r-project.org/src/contrib/colorspace_1.2-6.tar.gz</package> |
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80 <package>https://cran.r-project.org/src/contrib/dichromat_2.0-0.tar.gz</package> |
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81 <package>https://cran.r-project.org/src/contrib/labeling_0.3.tar.gz</package> |
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82 <package>https://cran.r-project.org/src/contrib/munsell_0.4.3.tar.gz</package> |
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83 <package>https://cran.r-project.org/src/contrib/reshape2_1.4.1.tar.gz</package> |
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84 <package>https://cran.r-project.org/src/contrib/gtable_0.2.0.tar.gz</package> |
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85 <package>https://cran.r-project.org/src/contrib/scales_0.4.0.tar.gz</package> |
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86 <package>https://cran.r-project.org/src/contrib/ggplot2_2.1.0.tar.gz</package> |
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87 <package>https://cran.r-project.org/src/contrib/rgl_0.95.1441.tar.gz</package> |
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88 <package>https://cran.r-project.org/src/contrib/ellipse_0.3-8.tar.gz</package> |
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89 <package>https://cran.r-project.org/src/contrib/corpcor_1.6.8.tar.gz</package> |
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90 <package>https://cran.r-project.org/src/contrib/cluster_2.0.4.tar.gz</package> |
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91 <package>https://cran.r-project.org/src/contrib/gridBase_0.4-7.tar.gz</package> |
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92 <package>https://cran.r-project.org/src/contrib/doParallel_1.0.10.tar.gz</package> |
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93 <package>https://cran.r-project.org/src/contrib/NMF_0.20.6.tar.gz</package> |
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94 <package>https://cran.r-project.org/src/contrib/irlba_2.0.0.tar.gz</package> |
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95 <package>https://cran.r-project.org/src/contrib/igraph_1.0.1.tar.gz</package> |
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96 <package>https://cran.r-project.org/src/contrib/mixOmics_5.2.0.tar.gz</package> |
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97 <package>https://bioarchive.galaxyproject.org/minfi_1.16.0.tar.gz</package> |
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98 <package>https://cran.r-project.org/src/contrib/getopt_1.20.0.tar.gz</package> |
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99 </action> |
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100 </actions> |
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101 </install> |
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102 <readme /> |
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103 </package> |
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104 </tool_dependency> |