Mercurial > repos > nturaga > package_minfi_1_16_0
annotate tool_dependencies.xml @ 16:a5c03de9ede7 draft
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
author | nturaga |
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date | Wed, 20 Apr 2016 16:29:49 -0400 |
parents | a207166bbeb2 |
children | 3c5dd2c0ecf1 |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit fb90aafc93e5e63acfcdac4c27cfd865cdf06c5a-dirty
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1 <?xml version="1.0"?> |
f453b1c037bc
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit fb90aafc93e5e63acfcdac4c27cfd865cdf06c5a-dirty
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2 <tool_dependency> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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3 <package name="libcurl" version="7.35"> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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4 <repository changeset_revision="f8230c44d76c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="http://gaius.bx.psu.edu:8008" /> |
a5c03de9ede7
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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5 </package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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6 <package name="R" version="3.2.1"> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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7 <repository changeset_revision="7289a736da57" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="http://gaius.bx.psu.edu:8008" /> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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8 </package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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9 <package name="minfi" version="1.16.0"> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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10 <install version="1.0"> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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11 <actions> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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12 <action type="setup_r_environment"> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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13 <repository changeset_revision="f8230c44d76c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="http://gaius.bx.psu.edu:8008"> |
a5c03de9ede7
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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14 <package name="libcurl" version="7.35" /> |
a5c03de9ede7
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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15 </repository> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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16 <repository changeset_revision="7289a736da57" name="package_r_3_2_1" owner="iuc" toolshed="http://gaius.bx.psu.edu:8008"> |
a5c03de9ede7
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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17 <package name="R" version="3.2.1" /> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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18 </repository> |
13
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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19 <package>https://bioconductor.org/packages/release/bioc/src/contrib/BiocGenerics_0.16.1.tar.gz</package> |
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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20 <package>https://bioarchive.galaxyproject.org/Biobase_2.29.1.tar.gz</package> |
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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21 <package>http://bioconductor.org/packages/release/bioc/src/contrib/S4Vectors_0.8.11.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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22 <package>http://bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.4.8.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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23 <package>https://bioarchive.galaxyproject.org/GenomeInfoDb_1.6.0.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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24 <package>https://bioarchive.galaxyproject.org/zlibbioc_1.16.0.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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25 <package>https://bioarchive.galaxyproject.org/XVector_0.10.0.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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26 <package>https://bioconductor.org/packages/release/bioc/src/contrib/GenomicRanges_1.22.4.tar.gz</package> |
8b8c10ede5e3
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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27 <package>https://bioarchive.galaxyproject.org/Biostrings_2.38.0.tar.gz</package> |
16
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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28 <package>https://depot.galaxyproject.org/package/noarch/iterators_1.0.8.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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29 <package>https://depot.galaxyproject.org/package/noarch/foreach_1.4.3.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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30 <package>https://depot.galaxyproject.org/package/noarch/locfit_1.5-9.1.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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31 <package>https://depot.galaxyproject.org/package/noarch/matrixStats_0.14.2.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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32 <package>https://bioarchive.galaxyproject.org/limma_3.26.0.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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33 <package>https://depot.galaxyproject.org/package/noarch/registry_0.3.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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34 <package>https://depot.galaxyproject.org/package/noarch/digest_0.6.9.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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35 <package>https://depot.galaxyproject.org/package/noarch/stringi_1.0-1.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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36 <package>https://depot.galaxyproject.org/package/noarch/magrittr_1.5.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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37 <package>https://depot.galaxyproject.org/package/noarch/stringr_1.0.0.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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38 <package>https://depot.galaxyproject.org/package/noarch/xtable_1.7-4.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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39 <package>https://depot.galaxyproject.org/package/noarch/pkgmaker_0.22.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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40 <package>https://depot.galaxyproject.org/package/noarch/rngtools_1.2.4.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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41 <package>https://depot.galaxyproject.org/package/noarch/doRNG_1.6.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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42 <package>https://depot.galaxyproject.org/package/noarch/DBI_0.3.1.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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43 <package>https://depot.galaxyproject.org/package/noarch/RSQLite_1.0.0.tar.gz</package> |
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44 <package>https://bioconductor.org/packages/release/bioc/src/contrib/AnnotationDbi_1.32.3.tar.gz</package> |
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45 <package>https://depot.galaxyproject.org/package/noarch/bitops_1.0-6.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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46 <package>https://depot.galaxyproject.org/package/noarch/RCurl_1.95-4.7.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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47 <package>https://depot.galaxyproject.org/package/noarch/XML_3.98-1.3.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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48 <package>https://depot.galaxyproject.org/package/noarch/lambda.r_1.1.7.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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49 <package>https://depot.galaxyproject.org/package/noarch/futile.options_1.0.0.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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50 <package>https://depot.galaxyproject.org/package/noarch/futile.logger_1.4.1.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty
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51 <package>https://depot.galaxyproject.org/package/noarch/snow_0.3-13.tar.gz</package> |
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52 <package>https://bioarchive.galaxyproject.org/BiocParallel_1.3.54.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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53 <package>https://bioarchive.galaxyproject.org/Rsamtools_1.22.0.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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54 <package>https://bioconductor.org/packages/release/bioc/src/contrib/SummarizedExperiment_1.0.2.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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55 <package>https://bioarchive.galaxyproject.org/GenomicAlignments_1.6.0.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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56 <package>https://bioarchive.galaxyproject.org/rtracklayer_1.30.0.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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57 <package>https://bioconductor.org/packages/release/bioc/src/contrib/biomaRt_2.26.1.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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58 <package>https://bioconductor.org/packages/release/bioc/src/contrib/GenomicFeatures_1.22.13.tar.gz</package> |
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59 <package>https://bioarchive.galaxyproject.org/bumphunter_1.10.0.tar.gz</package> |
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60 <package>https://depot.galaxyproject.org/package/noarch/beanplot_1.2.tar.gz</package> |
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61 <package>https://depot.galaxyproject.org/package/noarch/RColorBrewer_1.1-2.tar.gz</package> |
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62 <package>https://depot.galaxyproject.org/package/noarch/nor1mix_1.2-1.tar.gz</package> |
13
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63 <package>http://bioconductor.org/packages/release/bioc/src/contrib/multtest_2.26.0.tar.gz</package> |
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64 <package>https://www.bioconductor.org/packages/release/bioc/src/contrib/siggenes_1.44.0.tar.gz</package> |
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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
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65 <package>http://bioconductor.org/packages/release/bioc/src/contrib/preprocessCore_1.32.0.tar.gz</package> |
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66 <package>https://depot.galaxyproject.org/package/noarch/base64_1.1.tar.gz</package> |
13
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67 <package>http://bioconductor.org/packages/release/bioc/src/contrib/illuminaio_0.12.0.tar.gz</package> |
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68 <package>https://depot.galaxyproject.org/package/noarch/mclust_5.0.2.tar.gz</package> |
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69 <package>https://bioarchive.galaxyproject.org/annotate_1.48.0.tar.gz</package> |
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70 <package>http://bioconductor.org/packages/release/bioc/src/contrib/genefilter_1.52.1.tar.gz</package> |
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71 <package>https://depot.galaxyproject.org/package/noarch/Rcpp_0.12.1.tar.gz</package> |
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72 <package>https://depot.galaxyproject.org/package/noarch/plyr_1.8.3.tar.gz</package> |
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73 <package>https://depot.galaxyproject.org/package/noarch/reshape_0.8.5.tar.gz</package> |
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74 <package>https://depot.galaxyproject.org/package/noarch/quadprog_1.5-5.tar.gz</package> |
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75 <package>https://bioarchive.galaxyproject.org/GEOquery_2.35.7.tar.gz</package> |
16
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76 <package>https://depot.galaxyproject.org/package/noarch/colorspace_1.2-6.tar.gz</package> |
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77 <package>https://depot.galaxyproject.org/package/noarch/dichromat_2.0-0.tar.gz</package> |
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78 <package>https://depot.galaxyproject.org/package/noarch/labeling_0.3.tar.gz</package> |
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79 <package>https://depot.galaxyproject.org/package/noarch/munsell_0.4.3.tar.gz</package> |
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80 <package>https://depot.galaxyproject.org/package/noarch/reshape2_1.4.1.tar.gz</package> |
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81 <package>https://depot.galaxyproject.org/package/noarch/gtable_0.2.0.tar.gz</package> |
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82 <package>https://depot.galaxyproject.org/package/noarch/scales_0.4.0.tar.gz</package> |
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83 <package>https://depot.galaxyproject.org/package/noarch/ggplot2_2.1.0.tar.gz</package> |
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84 <package>https://depot.galaxyproject.org/package/noarch/rgl_0.95.1441.tar.gz</package> |
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85 <package>https://depot.galaxyproject.org/package/noarch/ellipse_0.3-8.tar.gz</package> |
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86 <package>https://depot.galaxyproject.org/package/noarch/corpcor_1.6.8.tar.gz</package> |
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87 <package>https://depot.galaxyproject.org/package/noarch/cluster_2.0.4.tar.gz</package> |
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88 <package>https://depot.galaxyproject.org/package/noarch/gridBase_0.4-7.tar.gz</package> |
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89 <package>https://depot.galaxyproject.org/package/noarch/doParallel_1.0.10.tar.gz</package> |
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90 <package>https://depot.galaxyproject.org/package/noarch/NMF_0.20.6.tar.gz</package> |
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91 <package>https://depot.galaxyproject.org/package/noarch/irlba_2.0.0.tar.gz</package> |
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92 <package>https://depot.galaxyproject.org/package/noarch/igraph_1.0.1.tar.gz</package> |
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93 <package>https://depot.galaxyproject.org/package/noarch/mixOmics_5.2.0.tar.gz</package> |
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94 <package>https://bioarchive.galaxyproject.org/minfi_1.16.0.tar.gz</package> |
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95 <package>https://depot.galaxyproject.org/package/noarch/getopt_1.20.0.tar.gz</package> |
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96 <package>https://bioconductor.org/packages/release/data/experiment/src/contrib/FlowSorted.Blood.450k_1.8.0.tar.gz</package> |
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97 </action> |
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98 </actions> |
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99 </install> |
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100 <readme> |
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101 </readme> |
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102 </package> |
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103 </tool_dependency> |