Mercurial > repos > nturaga > package_minfi_1_16_0

comparison tool_dependencies.xml @ 10:4ed93cb9744f draft

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planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
author nturaga
date Tue, 19 Apr 2016 15:08:33 -0400
parents c83b6496d7e1
children 28a427fb7258
comparison
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9:c83b6496d7e1 10:4ed93cb9744f
26 <package>https://bioarchive.galaxyproject.org/GenomeInfoDb_1.6.0.tar.gz</package> 26 <package>https://bioarchive.galaxyproject.org/GenomeInfoDb_1.6.0.tar.gz</package>
27 <package>https://bioarchive.galaxyproject.org/zlibbioc_1.16.0.tar.gz</package> 27 <package>https://bioarchive.galaxyproject.org/zlibbioc_1.16.0.tar.gz</package>
28 <package>https://bioarchive.galaxyproject.org/XVector_0.10.0.tar.gz</package> 28 <package>https://bioarchive.galaxyproject.org/XVector_0.10.0.tar.gz</package>
29 <package>https://bioarchive.galaxyproject.org/GenomicRanges_1.22.0.tar.gz</package> 29 <package>https://bioarchive.galaxyproject.org/GenomicRanges_1.22.0.tar.gz</package>
30 <package>https://bioarchive.galaxyproject.org/Biostrings_2.38.0.tar.gz</package> 30 <package>https://bioarchive.galaxyproject.org/Biostrings_2.38.0.tar.gz</package>
31 <!-- <package>https://bioarchive.galaxyproject.org/iterators_1.0.8.tar.gz</package> 31 <package>https://cran.r-project.org/src/contrib/iterators_1.0.8.tar.gz</package>
32 <package>https://bioarchive.galaxyproject.org/foreach_1.4.3.tar.gz</package> 32 <package>https://cran.r-project.org/src/contrib/foreach_1.4.3.tar.gz</package>
33 <package>https://bioarchive.galaxyproject.org/locfit_1.5-9.1.tar.gz</package> 33 <package>https://cran.r-project.org/src/contrib/locfit_1.5-9.1.tar.gz</package>
34 <package>https://bioarchive.galaxyproject.org/matrixStats_0.14.2.tar.gz</package> --> 34 <package>https://cran.r-project.org/src/contrib/matrixStats_0.14.2.tar.gz</package>
35 <package>https://bioarchive.galaxyproject.org/limma_3.26.0.tar.gz</package> 35 <package>https://bioarchive.galaxyproject.org/limma_3.26.0.tar.gz</package>
36 <!-- <package>https://bioarchive.galaxyproject.org/registry_0.3.tar.gz</package> --> 36 <package>https://cran.r-project.org/src/contrib/registry_0.3.tar.gz</package>
37 <!-- <package>https://bioarchive.galaxyproject.org/digest_0.6.8.tar.gz</package> --> 37 <package>https://cran.r-project.org/src/contrib/digest_0.6.8.tar.gz</package>
38 <!-- <package>https://bioarchive.galaxyproject.org/stringi_0.5-5.tar.gz</package> --> 38 <package>https://cran.r-project.org/src/contrib/stringi_1.0-1.tar.gz</package>
39 <!-- <package>https://bioarchive.galaxyproject.org/magrittr_1.5.tar.gz</package> --> 39 <package>https://cran.r-project.org/src/contrib/magrittr_1.5.tar.gz</package>
40 <!-- <package>https://bioarchive.galaxyproject.org/stringr_1.0.0.tar.gz</package> --> 40 <package>https://cran.r-project.org/src/contrib/stringr_1.0.0.tar.gz</package>
41 <!-- <package>https://bioarchive.galaxyproject.org/xtable_1.7-4.tar.gz</package> --> 41 <package>https://cran.r-project.org/src/contrib/xtable_1.8-2.tar.gz</package>
42 <!-- <package>https://bioarchive.galaxyproject.org/pkgmaker_0.22.tar.gz</package> --> 42 <package>https://cran.r-project.org/src/contrib/pkgmaker_0.22.tar.gz</package>
43 <!-- <package>https://bioarchive.galaxyproject.org/rngtools_1.2.4.tar.gz</package> --> 43 <package>https://cran.r-project.org/src/contrib/rngtools_1.2.4.tar.gz</package>
44 <!-- <package>https://bioarchive.galaxyproject.org/doRNG_1.6.tar.gz</package> --> 44 <package>https://cran.r-project.org/src/contrib/doRNG_1.6.tar.gz</package>
45 <!-- <package>https://bioarchive.galaxyproject.org/DBI_0.3.1.tar.gz</package> --> 45 <package>https://cran.r-project.org/src/contrib/DBI_0.3.1.tar.gz</package>
46 <!-- <package>https://bioarchive.galaxyproject.org/RSQLite_1.0.0.tar.gz</package> --> 46 <package>https://cran.r-project.org/src/contrib/RSQLite_1.0.0.tar.gz</package>
47 <package>https://bioarchive.galaxyproject.org/AnnotationDbi_1.31.17.tar.gz</package> 47 <package>https://bioarchive.galaxyproject.org/AnnotationDbi_1.31.17.tar.gz</package>
48 <!-- <package>https://bioarchive.galaxyproject.org/bitops_1.0-6.tar.gz</package> --> 48 <package>https://cran.r-project.org/src/contrib/bitops_1.0-6.tar.gz</package>
49 <!-- <package>https://bioarchive.galaxyproject.org/RCurl_1.95-4.7.tar.gz</package> --> 49 <package>https://cran.r-project.org/src/contrib/RCurl_1.95-4.7.tar.gz</package>
50 <!-- <package>https://bioarchive.galaxyproject.org/XML_3.98-1.3.tar.gz</package> --> 50 <package>https://cran.r-project.org/src/contrib/XML_3.98-1.3.tar.gz</package>
51 <!-- <package>https://bioarchive.galaxyproject.org/lambda.r_1.1.7.tar.gz</package> --> 51 <package>https://cran.r-project.org/src/contrib/lambda.r_1.1.7.tar.gz</package>
52 <!-- <package>https://bioarchive.galaxyproject.org/futile.options_1.0.0.tar.gz</package> --> 52 <package>https://cran.r-project.org/src/contrib/futile.options_1.0.0.tar.gz</package>
53 <!-- <package>https://bioarchive.galaxyproject.org/futile.logger_1.4.1.tar.gz</package> --> 53 <package>https://cran.r-project.org/src/contrib/futile.logger_1.4.1.tar.gz</package>
54 <!-- <package>https://bioarchive.galaxyproject.org/snow_0.3-13.tar.gz</package> --> 54 <package>https://cran.r-project.org/src/contrib/snow_0.3-13.tar.gz</package>
55 <package>https://bioarchive.galaxyproject.org/BiocParallel_1.3.54.tar.gz</package> 55 <package>https://bioarchive.galaxyproject.org/BiocParallel_1.3.54.tar.gz</package>
56 <package>https://bioarchive.galaxyproject.org/Rsamtools_1.22.0.tar.gz</package> 56 <package>https://bioarchive.galaxyproject.org/Rsamtools_1.22.0.tar.gz</package>
57 <package>https://bioarchive.galaxyproject.org/GenomicAlignments_1.6.0.tar.gz</package> 57 <package>https://bioarchive.galaxyproject.org/GenomicAlignments_1.6.0.tar.gz</package>
58 <package>https://bioarchive.galaxyproject.org/rtracklayer_1.30.0.tar.gz</package> 58 <package>https://bioarchive.galaxyproject.org/rtracklayer_1.30.0.tar.gz</package>
59 <package>https://bioarchive.galaxyproject.org/biomaRt_2.25.0.tar.gz</package> 59 <package>https://bioarchive.galaxyproject.org/biomaRt_2.25.0.tar.gz</package>
60 <package>https://bioarchive.galaxyproject.org/GenomicFeatures_1.21.13.tar.gz</package> 60 <package>https://bioarchive.galaxyproject.org/GenomicFeatures_1.21.13.tar.gz</package>
61 <package>https://bioarchive.galaxyproject.org/bumphunter_1.10.0.tar.gz</package> 61 <package>https://bioarchive.galaxyproject.org/bumphunter_1.10.0.tar.gz</package>
62 <!-- <package>https://bioarchive.galaxyproject.org/beanplot_1.2.tar.gz</package> --> 62 <package>https://cran.r-project.org/src/contrib/beanplot_1.2.tar.gz</package>
63 <!-- <package>https://bioarchive.galaxyproject.org/RColorBrewer_1.1-2.tar.gz</package> --> 63 <package>https://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package>
64 <!-- <package>https://bioarchive.galaxyproject.org/nor1mix_1.2-1.tar.gz</package> --> 64 <package>https://cran.r-project.org/src/contrib/nor1mix_1.2-1.tar.gz</package>
65 <package>https://bioarchive.galaxyproject.org/multtest_2.25.2.tar.gz</package> 65 <package>https://bioarchive.galaxyproject.org/multtest_2.25.2.tar.gz</package>
66 <package>https://bioarchive.galaxyproject.org/siggenes_1.43.0.tar.gz</package> 66 <package>https://bioarchive.galaxyproject.org/siggenes_1.43.0.tar.gz</package>
67 <package>https://bioarchive.galaxyproject.org/preprocessCore_1.31.0.tar.gz</package> 67 <package>https://bioarchive.galaxyproject.org/preprocessCore_1.31.0.tar.gz</package>
68 <!-- <package>https://bioarchive.galaxyproject.org/base64_1.1.tar.gz</package> --> 68 <package>https://cran.r-project.org/src/contrib/base64_1.1.tar.gz</package>
69 <package>https://bioarchive.galaxyproject.org/illuminaio_0.12.0.tar.gz</package> 69 <package>https://bioarchive.galaxyproject.org/illuminaio_0.12.0.tar.gz</package>
70 <!-- <package>https://bioarchive.galaxyproject.org/mclust_5.0.2.tar.gz</package> --> 70 <package>https://cran.r-project.org/src/contrib/mclust_5.0.2.tar.gz</package>
71 <package>https://bioarchive.galaxyproject.org/annotate_1.48.0.tar.gz</package> 71 <package>https://bioarchive.galaxyproject.org/annotate_1.48.0.tar.gz</package>
72 <package>https://bioarchive.galaxyproject.org/genefilter_1.51.0.tar.gz</package> 72 <package>https://bioarchive.galaxyproject.org/genefilter_1.51.0.tar.gz</package>
73 <!-- <package>https://bioarchive.galaxyproject.org/Rcpp_0.12.1.tar.gz</package> --> 73 <package>https://cran.r-project.org/src/contrib/Rcpp_0.12.1.tar.gz</package>
74 <!-- <package>https://bioarchive.galaxyproject.org/plyr_1.8.3.tar.gz</package> --> 74 <package>https://cran.r-project.org/src/contrib/plyr_1.8.3.tar.gz</package>
75 <!-- <package>https://bioarchive.galaxyproject.org/reshape_0.8.5.tar.gz</package> --> 75 <package>https://cran.r-project.org/src/contrib/reshape_0.8.5.tar.gz</package>
76 <!-- <package>https://bioarchive.galaxyproject.org/quadprog_1.5-5.tar.gz</package> --> 76 <package>https://cran.r-project.org/src/contrib/quadprog_1.5-5.tar.gz</package>
77 <package>https://bioarchive.galaxyproject.org/GEOquery_2.35.7.tar.gz</package> 77 <package>https://bioarchive.galaxyproject.org/GEOquery_2.35.7.tar.gz</package>
78 <package>https://bioarchive.galaxyproject.org/minfi_1.16.0.tar.gz</package> 78 <package>https://bioarchive.galaxyproject.org/minfi_1.16.0.tar.gz</package>
79 </action> 79 </action>
80 </actions> 80 </actions>
81 </install> 81 </install>