comparison tool_dependencies.xml @ 12:fb9a9cd3e360 draft

planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
author nturaga
date Tue, 19 Apr 2016 15:31:27 -0400
parents 28a427fb7258
children 8b8c10ede5e3
comparison
equal deleted inserted replaced
11:28a427fb7258 12:fb9a9cd3e360
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="libcurl" version="7.35"> 3 <package name="libcurl" version="7.35">
4 <repository changeset_revision="f8230c44d76c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="http://gaius.bx.psu.edu:8008" /> 4 <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="R" version="3.2.1"> 6 <package name="R" version="3.2.1">
7 <repository changeset_revision="7289a736da57" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="http://gaius.bx.psu.edu:8008" /> 7 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="minfi" version="1.16.0"> 9 <package name="r-getopt" version="1.20.0">
10 <install version="1.0"> 10 <repository changeset_revision="712cb82311a8" name="package_r_3_2_1_getopt_1_20_0" owner="bebatut" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
11 <actions> 11 </package>
12 <action type="setup_r_environment"> 12 <package name="minfi" version="1.16.0">
13 <repository changeset_revision="f8230c44d76c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="http://gaius.bx.psu.edu:8008"> 13 <install version="1.0">
14 <package name="libcurl" version="7.35" /> 14 <actions>
15 </repository> 15 <action type="setup_r_environment">
16 <repository changeset_revision="7289a736da57" name="package_r_3_2_1" owner="iuc" toolshed="http://gaius.bx.psu.edu:8008"> 16 <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
17 <package name="R" version="3.2.1" /> 17 <package name="libcurl" version="7.35" />
18 </repository> 18 </repository>
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21 <package>https://bioarchive.galaxyproject.org/S4Vectors_0.8.0.tar.gz</package> 21 </repository>
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45 <package>https://cran.r-project.org/src/contrib/bitops_1.0-6.tar.gz</package> 45 <package>https://cran.r-project.org/src/contrib/DBI_0.3.1.tar.gz</package>
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52 <package>https://bioarchive.galaxyproject.org/BiocParallel_1.3.54.tar.gz</package> 52 <package>https://cran.r-project.org/src/contrib/futile.options_1.0.0.tar.gz</package>
53 <package>https://bioarchive.galaxyproject.org/Rsamtools_1.22.0.tar.gz</package> 53 <package>https://cran.r-project.org/src/contrib/futile.logger_1.4.1.tar.gz</package>
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55 <package>https://bioarchive.galaxyproject.org/rtracklayer_1.30.0.tar.gz</package> 55 <package>https://bioarchive.galaxyproject.org/BiocParallel_1.3.54.tar.gz</package>
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63 <package>https://www.bioconductor.org/packages/release/bioc/src/contrib/siggenes_1.44.0.tar.gz</package> 63 <package>https://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package>
64 <package>http://bioconductor.org/packages/release/bioc/src/contrib/preprocessCore_1.32.0.tar.gz</package> 64 <package>https://cran.r-project.org/src/contrib/nor1mix_1.2-1.tar.gz</package>
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67 <package>https://cran.r-project.org/src/contrib/Archive/mclust/mclust_5.0.2.tar.gz</package> 67 <package>http://bioconductor.org/packages/release/bioc/src/contrib/preprocessCore_1.32.0.tar.gz</package>
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74 <package>https://bioarchive.galaxyproject.org/GEOquery_2.35.7.tar.gz</package> 74 <package>https://cran.r-project.org/src/contrib/plyr_1.8.3.tar.gz</package>
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77 </action> 77 <package>https://bioarchive.galaxyproject.org/GEOquery_2.35.7.tar.gz</package>
78 </actions> 78 <package>https://bioarchive.galaxyproject.org/minfi_1.16.0.tar.gz</package>
79 </install> 79 <package>https://cran.r-project.org/src/contrib/getopt_1.20.0.tar.gz</package>
80 <readme> 80 </action>
81 </readme> 81 </actions>
82 </package> 82 </install>
83 <readme />
84 </package>
83 </tool_dependency> 85 </tool_dependency>