Mercurial > repos > nturaga > package_minfi_1_16_0
diff tool_dependencies.xml @ 11:28a427fb7258 draft
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit cd2aa0df28d6d740d86c5aec560f51e74ef3510d-dirty
| author | nturaga |
|---|---|
| date | Tue, 19 Apr 2016 15:28:38 -0400 |
| parents | 4ed93cb9744f |
| children | fb9a9cd3e360 |
line wrap: on
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--- a/tool_dependencies.xml Tue Apr 19 15:08:33 2016 -0400 +++ b/tool_dependencies.xml Tue Apr 19 15:28:38 2016 -0400 @@ -1,85 +1,83 @@ <?xml version="1.0"?> <tool_dependency> <package name="libcurl" version="7.35"> - <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="f8230c44d76c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="http://gaius.bx.psu.edu:8008" /> </package> <package name="R" version="3.2.1"> - <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - <package name="r-getopt" version="1.20.0"> - <repository changeset_revision="712cb82311a8" name="package_r_3_2_1_getopt_1_20_0" owner="bebatut" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="7289a736da57" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="http://gaius.bx.psu.edu:8008" /> </package> <package name="minfi" version="1.16.0"> <install version="1.0"> - <actions> - <action type="setup_r_environment"> - <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> - <package name="libcurl" version="7.35" /> - </repository> - <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> - <package name="R" version="3.2.1" /> - </repository> - <package>https://bioarchive.galaxyproject.org/BiocGenerics_0.16.0.tar.gz</package> - <package>https://bioarchive.galaxyproject.org/Biobase_2.29.1.tar.gz</package> - <package>https://bioarchive.galaxyproject.org/S4Vectors_0.8.0.tar.gz</package> - 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<package>https://cran.r-project.org/src/contrib/quadprog_1.5-5.tar.gz</package> + <package>https://bioarchive.galaxyproject.org/GEOquery_2.35.7.tar.gz</package> + <package>https://bioarchive.galaxyproject.org/minfi_1.16.0.tar.gz</package> + <package>https://cran.r-project.org/src/contrib/getopt_1.20.0.tar.gz</package> + </action> + </actions> </install> - <readme> - </readme> -</package> -</tool_dependency> + <readme> + </readme> + </package> +</tool_dependency> \ No newline at end of file