# HG changeset patch
# User nturaga
# Date 1461081533 14400
# Node ID d0cee75b3e2e89522728845b51a9ca6ad9f2b30c
# Parent  f453b1c037bca4fe4444832bbe69e74e0cb0df7d
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit fb90aafc93e5e63acfcdac4c27cfd865cdf06c5a-dirty

diff -r f453b1c037bc -r d0cee75b3e2e tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Apr 19 10:58:29 2016 -0400
+++ b/tool_dependencies.xml	Tue Apr 19 11:58:53 2016 -0400
@@ -6,6 +6,9 @@
     <package name="R" version="3.2.1">
         <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
+    <package name="r-getopt" version="1.20.0">
+        <repository changeset_revision="712cb82311a8" name="package_r_3_2_1_getopt_1_20_0" owner="bebatut" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
     <package name="minfi" version="1.16.0">
         <install version="1.0">
         <actions>
@@ -73,7 +76,6 @@
                 <package>https://bioarchive.galaxyproject.org/quadprog_1.5-5.tar.gz</package>
                 <package>https://bioarchive.galaxyproject.org/GEOquery_2.35.7.tar.gz</package>
                 <package>https://bioarchive.galaxyproject.org/minfi_1.16.0.tar.gz</package>
-                <package>https://cran.r-project.org/src/contrib/getopt_1.20.0.tar.gz</package>
             </action>
         </actions>
         </install>