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comparison ITSx_db/HMMs/A.hmm @ 0:f82c70f54bd7 draft

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author okorol
date Tue, 24 Mar 2015 12:02:48 -0400
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-1:000000000000 0:f82c70f54bd7
1 HMMER3/b [3.0 | March 2010]
2 NAME 3_End_Alveolata_58S_end_eighta_long
3 LENG 45
4 ALPH DNA
5 RF no
6 CS no
7 MAP yes
8 DATE Wed Feb 29 22:48:49 2012
9 NSEQ 2
10 EFFN 2.000000
11 CKSUM 875354829
12 STATS LOCAL MSV -7.4772 0.72750
13 STATS LOCAL VITERBI -8.4131 0.72750
14 STATS LOCAL FORWARD -3.2493 0.72750
15 HMM A C G T
16 m->m m->i m->d i->m i->i d->m d->d
17 COMPO 2.02810 1.19053 1.12475 1.42869
18 1.38629 1.38629 1.38629 1.38629
19 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
20 1 2.53331 3.02441 0.20344 2.88069 1 - -
21 1.38629 1.38629 1.38629 1.38629
22 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
23 2 2.53331 3.02441 0.20344 2.88069 2 - -
24 1.38629 1.38629 1.38629 1.38629
25 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
26 3 2.81865 0.23582 2.88868 2.35662 3 - -
27 1.38629 1.38629 1.38629 1.38629
28 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
29 4 2.53331 3.02441 0.20344 2.88069 4 - -
30 1.38629 1.38629 1.38629 1.38629
31 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
32 5 2.81865 0.23582 2.88868 2.35662 5 - -
33 1.38629 1.38629 1.38629 1.38629
34 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
35 6 2.81865 0.23582 2.88868 2.35662 6 - -
36 1.38629 1.38629 1.38629 1.38629
37 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
38 7 2.53331 3.02441 0.20344 2.88069 7 - -
39 1.38629 1.38629 1.38629 1.38629
40 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
41 8 2.57915 2.25909 2.64442 0.28946 8 - -
42 1.38629 1.38629 1.38629 1.38629
43 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
44 9 0.23862 2.84929 2.43386 2.70756 9 - -
45 1.38629 1.38629 1.38629 1.38629
46 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
47 10 2.81865 0.23582 2.88868 2.35662 10 - -
48 1.38629 1.38629 1.38629 1.38629
49 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
50 11 2.53331 3.02441 0.20344 2.88069 11 - -
51 1.38629 1.38629 1.38629 1.38629
52 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
53 12 2.53331 3.02441 0.20344 2.88069 12 - -
54 1.38629 1.38629 1.38629 1.38629
55 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
56 13 2.57915 2.25909 2.64442 0.28946 13 - -
57 1.38629 1.38629 1.38629 1.38629
58 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
59 14 2.57915 2.25909 2.64442 0.28946 14 - -
60 1.38629 1.38629 1.38629 1.38629
61 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
62 15 2.81865 0.23582 2.88868 2.35662 15 - -
63 1.38629 1.38629 1.38629 1.38629
64 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
65 16 2.53331 3.02441 0.20344 2.88069 16 - -
66 1.38629 1.38629 1.38629 1.38629
67 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
68 17 2.81865 0.23582 2.88868 2.35662 17 - -
69 1.38629 1.38629 1.38629 1.38629
70 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
71 18 2.81865 0.23582 2.88868 2.35662 18 - -
72 1.38629 1.38629 1.38629 1.38629
73 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
74 19 2.53331 3.02441 0.20344 2.88069 19 - -
75 1.38629 1.38629 1.38629 1.38629
76 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
77 20 2.57915 2.25909 2.64442 0.28946 20 - -
78 1.38629 1.38629 1.38629 1.38629
79 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
80 21 2.81865 0.23582 2.88868 2.35662 21 - -
81 1.38629 1.38629 1.38629 1.38629
82 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
83 22 2.53331 3.02441 0.20344 2.88069 22 - -
84 1.38629 1.38629 1.38629 1.38629
85 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
86 23 2.53331 3.02441 0.20344 2.88069 23 - -
87 1.38629 1.38629 1.38629 1.38629
88 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
89 24 2.81865 0.23582 2.88868 2.35662 24 - -
90 1.38629 1.38629 1.38629 1.38629
91 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
92 25 0.23862 2.84929 2.43386 2.70756 25 - -
93 1.38629 1.38629 1.38629 1.38629
94 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
95 26 2.81865 0.23582 2.88868 2.35662 26 - -
96 1.38629 1.38629 1.38629 1.38629
97 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
98 27 2.53331 3.02441 0.20344 2.88069 27 - -
99 1.38629 1.38629 1.38629 1.38629
100 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
101 28 2.81865 0.23582 2.88868 2.35662 28 - -
102 1.38629 1.38629 1.38629 1.38629
103 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
104 29 2.81865 0.23582 2.88868 2.35662 29 - -
105 1.38629 1.38629 1.38629 1.38629
106 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
107 30 2.57915 2.25909 2.64442 0.28946 30 - -
108 1.38629 1.38629 1.38629 1.38629
109 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
110 31 2.53331 3.02441 0.20344 2.88069 31 - -
111 1.38629 1.38629 1.38629 1.38629
112 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
113 32 2.53331 3.02441 0.20344 2.88069 32 - -
114 1.38629 1.38629 1.38629 1.38629
115 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
116 33 2.57915 2.25909 2.64442 0.28946 33 - -
117 1.38629 1.38629 1.38629 1.38629
118 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
119 34 2.81865 0.23582 2.88868 2.35662 34 - -
120 1.38629 1.38629 1.38629 1.38629
121 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
122 35 2.81865 0.23582 2.88868 2.35662 35 - -
123 1.38629 1.38629 1.38629 1.38629
124 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
125 36 0.23862 2.84929 2.43386 2.70756 36 - -
126 1.38629 1.38629 1.38629 1.38629
127 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
128 37 2.53331 3.02441 0.20344 2.88069 37 - -
129 1.38629 1.38629 1.38629 1.38629
130 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
131 38 2.57915 2.25909 2.64442 0.28946 38 - -
132 1.38629 1.38629 1.38629 1.38629
133 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
134 39 2.53331 3.02441 0.20344 2.88069 39 - -
135 1.38629 1.38629 1.38629 1.38629
136 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
137 40 2.57915 2.25909 2.64442 0.28946 40 - -
138 1.38629 1.38629 1.38629 1.38629
139 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
140 41 2.81865 0.23582 2.88868 2.35662 41 - -
141 1.38629 1.38629 1.38629 1.38629
142 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
143 42 2.57915 2.25909 2.64442 0.28946 42 - -
144 1.38629 1.38629 1.38629 1.38629
145 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
146 43 2.57915 2.25909 2.64442 0.28946 43 - -
147 1.38629 1.38629 1.38629 1.38629
148 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
149 44 2.53331 3.02441 0.20344 2.88069 44 - -
150 1.38629 1.38629 1.38629 1.38629
151 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
152 45 2.57915 2.25909 2.64442 0.28946 45 - -
153 1.38629 1.38629 1.38629 1.38629
154 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
155 //
156 HMMER3/b [3.0 | March 2010]
157 NAME 3_End_Alveolata_58S_end_eightb_long
158 LENG 45
159 ALPH DNA
160 RF no
161 CS no
162 MAP yes
163 DATE Wed Feb 29 22:48:56 2012
164 NSEQ 5
165 EFFN 3.334961
166 CKSUM 2194532692
167 STATS LOCAL MSV -8.0757 0.71931
168 STATS LOCAL VITERBI -7.9285 0.71931
169 STATS LOCAL FORWARD -3.6374 0.71931
170 HMM A C G T
171 m->m m->i m->d i->m i->i d->m d->d
172 COMPO 2.20861 1.12285 1.26075 1.26814
173 1.38629 1.38629 1.38629 1.38629
174 0.03680 4.01367 4.01367 1.46634 0.26236 0.00000 *
175 1 2.95026 3.59174 0.11672 3.49682 1 - -
176 1.38629 1.38629 1.38629 1.38629
177 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
178 2 3.43763 0.12967 3.48690 2.83229 2 - -
179 1.38629 1.38629 1.38629 1.38629
180 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
181 3 2.95026 3.59174 0.11672 3.49682 3 - -
182 1.38629 1.38629 1.38629 1.38629
183 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
184 4 3.43763 0.12967 3.48690 2.83229 4 - -
185 1.38629 1.38629 1.38629 1.38629
186 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
187 5 3.43763 0.12967 3.48690 2.83229 5 - -
188 1.38629 1.38629 1.38629 1.38629
189 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
190 6 2.95026 3.59174 0.11672 3.49682 6 - -
191 1.38629 1.38629 1.38629 1.38629
192 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
193 7 2.95026 3.59174 0.11672 3.49682 7 - -
194 1.38629 1.38629 1.38629 1.38629
195 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
196 8 3.43763 0.12967 3.48690 2.83229 8 - -
197 1.38629 1.38629 1.38629 1.38629
198 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
199 9 3.09257 2.59766 3.14057 0.17804 9 - -
200 1.38629 1.38629 1.38629 1.38629
201 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
202 10 2.95026 3.59174 0.11672 3.49682 10 - -
203 1.38629 1.38629 1.38629 1.38629
204 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
205 11 2.95026 3.59174 0.11672 3.49682 11 - -
206 1.38629 1.38629 1.38629 1.38629
207 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
208 12 3.43763 0.12967 3.48690 2.83229 12 - -
209 1.38629 1.38629 1.38629 1.38629
210 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
211 13 2.44734 1.18879 2.51771 0.63820 13 - -
212 1.38629 1.38629 1.38629 1.38629
213 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
214 14 3.43763 0.12967 3.48690 2.83229 14 - -
215 1.38629 1.38629 1.38629 1.38629
216 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
217 15 3.09257 2.59766 3.14057 0.17804 15 - -
218 1.38629 1.38629 1.38629 1.38629
219 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
220 16 3.43763 0.12967 3.48690 2.83229 16 - -
221 1.38629 1.38629 1.38629 1.38629
222 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
223 17 3.43763 0.12967 3.48690 2.83229 17 - -
224 1.38629 1.38629 1.38629 1.38629
225 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
226 18 0.14138 3.38419 2.80447 3.28622 18 - -
227 1.38629 1.38629 1.38629 1.38629
228 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
229 19 2.95026 3.59174 0.11672 3.49682 19 - -
230 1.38629 1.38629 1.38629 1.38629
231 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
232 20 3.43763 0.12967 3.48690 2.83229 20 - -
233 1.38629 1.38629 1.38629 1.38629
234 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
235 21 3.43763 0.12967 3.48690 2.83229 21 - -
236 1.38629 1.38629 1.38629 1.38629
237 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
238 22 2.95026 3.59174 0.11672 3.49682 22 - -
239 1.38629 1.38629 1.38629 1.38629
240 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
241 23 2.95026 3.59174 0.11672 3.49682 23 - -
242 1.38629 1.38629 1.38629 1.38629
243 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
244 24 3.43763 0.12967 3.48690 2.83229 24 - -
245 1.38629 1.38629 1.38629 1.38629
246 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
247 25 0.14138 3.38419 2.80447 3.28622 25 - -
248 1.38629 1.38629 1.38629 1.38629
249 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
250 26 3.09257 2.59766 3.14057 0.17804 26 - -
251 1.38629 1.38629 1.38629 1.38629
252 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
253 27 2.95026 3.59174 0.11672 3.49682 27 - -
254 1.38629 1.38629 1.38629 1.38629
255 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
256 28 3.43763 0.12967 3.48690 2.83229 28 - -
257 1.38629 1.38629 1.38629 1.38629
258 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
259 29 3.09257 2.59766 3.14057 0.17804 29 - -
260 1.38629 1.38629 1.38629 1.38629
261 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
262 30 3.09257 2.59766 3.14057 0.17804 30 - -
263 1.38629 1.38629 1.38629 1.38629
264 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
265 31 2.95026 3.59174 0.11672 3.49682 31 - -
266 1.38629 1.38629 1.38629 1.38629
267 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
268 32 3.09257 2.59766 3.14057 0.17804 32 - -
269 1.38629 1.38629 1.38629 1.38629
270 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
271 33 3.09257 2.59766 3.14057 0.17804 33 - -
272 1.38629 1.38629 1.38629 1.38629
273 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
274 34 3.09257 2.59766 3.14057 0.17804 34 - -
275 1.38629 1.38629 1.38629 1.38629
276 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
277 35 3.43763 0.12967 3.48690 2.83229 35 - -
278 1.38629 1.38629 1.38629 1.38629
279 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
280 36 0.14138 3.38419 2.80447 3.28622 36 - -
281 1.38629 1.38629 1.38629 1.38629
282 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
283 37 2.95026 3.59174 0.11672 3.49682 37 - -
284 1.38629 1.38629 1.38629 1.38629
285 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
286 38 3.09257 2.59766 3.14057 0.17804 38 - -
287 1.38629 1.38629 1.38629 1.38629
288 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
289 39 2.95026 3.59174 0.11672 3.49682 39 - -
290 1.38629 1.38629 1.38629 1.38629
291 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
292 40 3.09257 2.59766 3.14057 0.17804 40 - -
293 1.38629 1.38629 1.38629 1.38629
294 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
295 41 3.43763 0.12967 3.48690 2.83229 41 - -
296 1.38629 1.38629 1.38629 1.38629
297 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
298 42 3.09257 2.59766 3.14057 0.17804 42 - -
299 1.38629 1.38629 1.38629 1.38629
300 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
301 43 3.43763 0.12967 3.48690 2.83229 43 - -
302 1.38629 1.38629 1.38629 1.38629
303 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
304 44 3.09257 2.59766 3.14057 0.17804 44 - -
305 1.38629 1.38629 1.38629 1.38629
306 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547
307 45 3.09257 2.59766 3.14057 0.17804 45 - -
308 1.38629 1.38629 1.38629 1.38629
309 0.01857 3.99544 * 1.46634 0.26236 0.00000 *
310 //
311 HMMER3/b [3.0 | March 2010]
312 NAME 3_End_Alveolata_58S_end_eightc_long
313 LENG 45
314 ALPH DNA
315 RF no
316 CS no
317 MAP yes
318 DATE Wed Feb 29 22:49:01 2012
319 NSEQ 5
320 EFFN 3.686523
321 CKSUM 4049282212
322 STATS LOCAL MSV -7.6145 0.71933
323 STATS LOCAL VITERBI -7.6391 0.71933
324 STATS LOCAL FORWARD -3.8726 0.71933
325 HMM A C G T
326 m->m m->i m->d i->m i->i d->m d->d
327 COMPO 1.75248 1.41803 1.36097 1.11458
328 1.38629 1.38629 1.38629 1.38629
329 0.03457 4.07525 4.07525 1.46634 0.26236 0.00000 *
330 1 0.12822 3.48998 2.87277 3.40223 1 - -
331 1.38629 1.38629 1.38629 1.38629
332 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
333 2 3.55903 0.11614 3.60298 2.91981 2 - -
334 1.38629 1.38629 1.38629 1.38629
335 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
336 3 0.12822 3.48998 2.87277 3.40223 3 - -
337 1.38629 1.38629 1.38629 1.38629
338 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
339 4 3.55903 0.11614 3.60298 2.91981 4 - -
340 1.38629 1.38629 1.38629 1.38629
341 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
342 5 3.55903 0.11614 3.60298 2.91981 5 - -
343 1.38629 1.38629 1.38629 1.38629
344 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
345 6 3.02261 3.69787 0.10579 3.61425 6 - -
346 1.38629 1.38629 1.38629 1.38629
347 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
348 7 3.02261 3.69787 0.10579 3.61425 7 - -
349 1.38629 1.38629 1.38629 1.38629
350 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
351 8 0.12822 3.48998 2.87277 3.40223 8 - -
352 1.38629 1.38629 1.38629 1.38629
353 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
354 9 3.02261 3.69787 0.10579 3.61425 9 - -
355 1.38629 1.38629 1.38629 1.38629
356 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
357 10 0.63103 2.61772 1.16807 2.47669 10 - -
358 1.38629 1.38629 1.38629 1.38629
359 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
360 11 3.02261 3.69787 0.10579 3.61425 11 - -
361 1.38629 1.38629 1.38629 1.38629
362 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
363 12 3.20077 2.66632 3.24458 0.16161 12 - -
364 1.38629 1.38629 1.38629 1.38629
365 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
366 13 1.57289 1.57364 2.19918 0.74577 13 - -
367 1.38629 1.38629 1.38629 1.38629
368 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
369 14 3.55903 0.11614 3.60298 2.91981 14 - -
370 1.38629 1.38629 1.38629 1.38629
371 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
372 15 3.20077 2.66632 3.24458 0.16161 15 - -
373 1.38629 1.38629 1.38629 1.38629
374 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
375 16 3.55903 0.11614 3.60298 2.91981 16 - -
376 1.38629 1.38629 1.38629 1.38629
377 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
378 17 2.76133 1.72287 2.82248 0.35842 17 - -
379 1.38629 1.38629 1.38629 1.38629
380 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
381 18 3.55903 0.11614 3.60298 2.91981 18 - -
382 1.38629 1.38629 1.38629 1.38629
383 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
384 19 3.20077 2.66632 3.24458 0.16161 19 - -
385 1.38629 1.38629 1.38629 1.38629
386 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
387 20 3.20077 2.66632 3.24458 0.16161 20 - -
388 1.38629 1.38629 1.38629 1.38629
389 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
390 21 3.55903 0.11614 3.60298 2.91981 21 - -
391 1.38629 1.38629 1.38629 1.38629
392 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
393 22 3.02261 3.69787 0.10579 3.61425 22 - -
394 1.38629 1.38629 1.38629 1.38629
395 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
396 23 3.02261 3.69787 0.10579 3.61425 23 - -
397 1.38629 1.38629 1.38629 1.38629
398 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
399 24 3.20077 2.66632 3.24458 0.16161 24 - -
400 1.38629 1.38629 1.38629 1.38629
401 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
402 25 0.12822 3.48998 2.87277 3.40223 25 - -
403 1.38629 1.38629 1.38629 1.38629
404 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
405 26 3.20077 2.66632 3.24458 0.16161 26 - -
406 1.38629 1.38629 1.38629 1.38629
407 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
408 27 3.02261 3.69787 0.10579 3.61425 27 - -
409 1.38629 1.38629 1.38629 1.38629
410 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
411 28 3.55903 0.11614 3.60298 2.91981 28 - -
412 1.38629 1.38629 1.38629 1.38629
413 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
414 29 3.20077 2.66632 3.24458 0.16161 29 - -
415 1.38629 1.38629 1.38629 1.38629
416 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
417 30 3.20077 2.66632 3.24458 0.16161 30 - -
418 1.38629 1.38629 1.38629 1.38629
419 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
420 31 3.55903 0.11614 3.60298 2.91981 31 - -
421 1.38629 1.38629 1.38629 1.38629
422 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
423 32 3.20077 2.66632 3.24458 0.16161 32 - -
424 1.38629 1.38629 1.38629 1.38629
425 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
426 33 3.20077 2.66632 3.24458 0.16161 33 - -
427 1.38629 1.38629 1.38629 1.38629
428 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
429 34 3.20077 2.66632 3.24458 0.16161 34 - -
430 1.38629 1.38629 1.38629 1.38629
431 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
432 35 3.55903 0.11614 3.60298 2.91981 35 - -
433 1.38629 1.38629 1.38629 1.38629
434 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
435 36 0.12822 3.48998 2.87277 3.40223 36 - -
436 1.38629 1.38629 1.38629 1.38629
437 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
438 37 3.02261 3.69787 0.10579 3.61425 37 - -
439 1.38629 1.38629 1.38629 1.38629
440 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
441 38 3.20077 2.66632 3.24458 0.16161 38 - -
442 1.38629 1.38629 1.38629 1.38629
443 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
444 39 3.02261 3.69787 0.10579 3.61425 39 - -
445 1.38629 1.38629 1.38629 1.38629
446 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
447 40 3.20077 2.66632 3.24458 0.16161 40 - -
448 1.38629 1.38629 1.38629 1.38629
449 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
450 41 3.02261 3.69787 0.10579 3.61425 41 - -
451 1.38629 1.38629 1.38629 1.38629
452 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
453 42 3.20077 2.66632 3.24458 0.16161 42 - -
454 1.38629 1.38629 1.38629 1.38629
455 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
456 43 3.02261 3.69787 0.10579 3.61425 43 - -
457 1.38629 1.38629 1.38629 1.38629
458 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
459 44 0.12822 3.48998 2.87277 3.40223 44 - -
460 1.38629 1.38629 1.38629 1.38629
461 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547
462 45 3.20077 2.66632 3.24458 0.16161 45 - -
463 1.38629 1.38629 1.38629 1.38629
464 0.01743 4.05812 * 1.46634 0.26236 0.00000 *
465 //
466 HMMER3/b [3.0 | March 2010]
467 NAME 3_End_Alveolata_58S_end_eightd_long
468 LENG 45
469 ALPH DNA
470 RF no
471 CS no
472 MAP yes
473 DATE Wed Feb 29 22:49:07 2012
474 NSEQ 2
475 EFFN 2.000000
476 CKSUM 1872219876
477 STATS LOCAL MSV -7.3853 0.72989
478 STATS LOCAL VITERBI -8.4090 0.72989
479 STATS LOCAL FORWARD -3.4944 0.72989
480 HMM A C G T
481 m->m m->i m->d i->m i->i d->m d->d
482 COMPO 1.71692 1.44276 1.18984 1.27355
483 1.38629 1.38629 1.38629 1.38629
484 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
485 1 2.53331 3.02441 0.20344 2.88069 1 - -
486 1.38629 1.38629 1.38629 1.38629
487 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
488 2 2.81865 0.23582 2.88868 2.35662 2 - -
489 1.38629 1.38629 1.38629 1.38629
490 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
491 3 0.23862 2.84929 2.43386 2.70756 3 - -
492 1.38629 1.38629 1.38629 1.38629
493 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
494 4 2.81865 0.23582 2.88868 2.35662 4 - -
495 1.38629 1.38629 1.38629 1.38629
496 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
497 5 2.81865 0.23582 2.88868 2.35662 5 - -
498 1.38629 1.38629 1.38629 1.38629
499 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
500 6 2.53331 3.02441 0.20344 2.88069 6 - -
501 1.38629 1.38629 1.38629 1.38629
502 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
503 7 0.23862 2.84929 2.43386 2.70756 7 - -
504 1.38629 1.38629 1.38629 1.38629
505 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
506 8 2.53331 3.02441 0.20344 2.88069 8 - -
507 1.38629 1.38629 1.38629 1.38629
508 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
509 9 2.53331 3.02441 0.20344 2.88069 9 - -
510 1.38629 1.38629 1.38629 1.38629
511 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
512 10 2.53331 3.02441 0.20344 2.88069 10 - -
513 1.38629 1.38629 1.38629 1.38629
514 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
515 11 2.53331 3.02441 0.20344 2.88069 11 - -
516 1.38629 1.38629 1.38629 1.38629
517 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
518 12 0.23862 2.84929 2.43386 2.70756 12 - -
519 1.38629 1.38629 1.38629 1.38629
520 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
521 13 2.57915 2.25909 2.64442 0.28946 13 - -
522 1.38629 1.38629 1.38629 1.38629
523 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
524 14 0.23862 2.84929 2.43386 2.70756 14 - -
525 1.38629 1.38629 1.38629 1.38629
526 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
527 15 2.57915 2.25909 2.64442 0.28946 15 - -
528 1.38629 1.38629 1.38629 1.38629
529 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
530 16 2.81865 0.23582 2.88868 2.35662 16 - -
531 1.38629 1.38629 1.38629 1.38629
532 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
533 17 2.81865 0.23582 2.88868 2.35662 17 - -
534 1.38629 1.38629 1.38629 1.38629
535 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
536 18 2.81865 0.23582 2.88868 2.35662 18 - -
537 1.38629 1.38629 1.38629 1.38629
538 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
539 19 2.81865 0.23582 2.88868 2.35662 19 - -
540 1.38629 1.38629 1.38629 1.38629
541 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
542 20 2.57915 2.25909 2.64442 0.28946 20 - -
543 1.38629 1.38629 1.38629 1.38629
544 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
545 21 1.88179 1.10717 1.04597 1.79675 21 - -
546 1.38629 1.38629 1.38629 1.38629
547 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
548 22 2.53331 3.02441 0.20344 2.88069 22 - -
549 1.38629 1.38629 1.38629 1.38629
550 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
551 23 2.53331 3.02441 0.20344 2.88069 23 - -
552 1.38629 1.38629 1.38629 1.38629
553 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
554 24 2.57915 2.25909 2.64442 0.28946 24 - -
555 1.38629 1.38629 1.38629 1.38629
556 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
557 25 0.23862 2.84929 2.43386 2.70756 25 - -
558 1.38629 1.38629 1.38629 1.38629
559 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
560 26 2.57915 2.25909 2.64442 0.28946 26 - -
561 1.38629 1.38629 1.38629 1.38629
562 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
563 27 2.53331 3.02441 0.20344 2.88069 27 - -
564 1.38629 1.38629 1.38629 1.38629
565 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
566 28 2.81865 0.23582 2.88868 2.35662 28 - -
567 1.38629 1.38629 1.38629 1.38629
568 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
569 29 2.15554 1.00938 2.23102 0.88601 29 - -
570 1.38629 1.38629 1.38629 1.38629
571 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
572 30 2.57915 2.25909 2.64442 0.28946 30 - -
573 1.38629 1.38629 1.38629 1.38629
574 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
575 31 2.53331 3.02441 0.20344 2.88069 31 - -
576 1.38629 1.38629 1.38629 1.38629
577 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
578 32 2.57915 2.25909 2.64442 0.28946 32 - -
579 1.38629 1.38629 1.38629 1.38629
580 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
581 33 2.15554 1.00938 2.23102 0.88601 33 - -
582 1.38629 1.38629 1.38629 1.38629
583 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
584 34 2.57915 2.25909 2.64442 0.28946 34 - -
585 1.38629 1.38629 1.38629 1.38629
586 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
587 35 2.81865 0.23582 2.88868 2.35662 35 - -
588 1.38629 1.38629 1.38629 1.38629
589 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
590 36 0.23862 2.84929 2.43386 2.70756 36 - -
591 1.38629 1.38629 1.38629 1.38629
592 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
593 37 2.53331 3.02441 0.20344 2.88069 37 - -
594 1.38629 1.38629 1.38629 1.38629
595 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
596 38 2.57915 2.25909 2.64442 0.28946 38 - -
597 1.38629 1.38629 1.38629 1.38629
598 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
599 39 2.53331 3.02441 0.20344 2.88069 39 - -
600 1.38629 1.38629 1.38629 1.38629
601 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
602 40 2.57915 2.25909 2.64442 0.28946 40 - -
603 1.38629 1.38629 1.38629 1.38629
604 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
605 41 2.53331 3.02441 0.20344 2.88069 41 - -
606 1.38629 1.38629 1.38629 1.38629
607 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
608 42 2.57915 2.25909 2.64442 0.28946 42 - -
609 1.38629 1.38629 1.38629 1.38629
610 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
611 43 2.53331 3.02441 0.20344 2.88069 43 - -
612 1.38629 1.38629 1.38629 1.38629
613 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
614 44 2.57915 2.25909 2.64442 0.28946 44 - -
615 1.38629 1.38629 1.38629 1.38629
616 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
617 45 2.57915 2.25909 2.64442 0.28946 45 - -
618 1.38629 1.38629 1.38629 1.38629
619 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
620 //
621 HMMER3/b [3.0 | March 2010]
622 NAME 3_End_Alveolata_58S_end_elevena_long
623 LENG 45
624 ALPH DNA
625 RF no
626 CS no
627 MAP yes
628 DATE Wed Feb 29 22:49:27 2012
629 NSEQ 5
630 EFFN 3.393555
631 CKSUM 1575714051
632 STATS LOCAL MSV -7.4839 0.71934
633 STATS LOCAL VITERBI -7.6990 0.71934
634 STATS LOCAL FORWARD -4.2620 0.71934
635 HMM A C G T
636 m->m m->i m->d i->m i->i d->m d->d
637 COMPO 1.55028 1.30282 1.33321 1.37666
638 1.38629 1.38629 1.38629 1.38629
639 0.03641 4.02420 4.02420 1.46634 0.26236 0.00000 *
640 1 2.68973 1.71652 2.75247 0.37304 1 - -
641 1.38629 1.38629 1.38629 1.38629
642 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
643 2 2.96311 3.61046 0.11471 3.51750 2 - -
644 1.38629 1.38629 1.38629 1.38629
645 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
646 3 3.45893 0.12717 3.50729 2.84776 3 - -
647 1.38629 1.38629 1.38629 1.38629
648 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
649 4 3.45893 0.12717 3.50729 2.84776 4 - -
650 1.38629 1.38629 1.38629 1.38629
651 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
652 5 3.45893 0.12717 3.50729 2.84776 5 - -
653 1.38629 1.38629 1.38629 1.38629
654 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
655 6 3.11130 2.60957 3.15859 0.17506 6 - -
656 1.38629 1.38629 1.38629 1.38629
657 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
658 7 3.11130 2.60957 3.15859 0.17506 7 - -
659 1.38629 1.38629 1.38629 1.38629
660 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
661 8 2.96311 3.61046 0.11471 3.51750 8 - -
662 1.38629 1.38629 1.38629 1.38629
663 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
664 9 2.96311 3.61046 0.11471 3.51750 9 - -
665 1.38629 1.38629 1.38629 1.38629
666 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
667 10 2.96311 3.61046 0.11471 3.51750 10 - -
668 1.38629 1.38629 1.38629 1.38629
669 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
670 11 3.45893 0.12717 3.50729 2.84776 11 - -
671 1.38629 1.38629 1.38629 1.38629
672 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
673 12 3.45893 0.12717 3.50729 2.84776 12 - -
674 1.38629 1.38629 1.38629 1.38629
675 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
676 13 0.13897 3.40269 2.81647 3.30648 13 - -
677 1.38629 1.38629 1.38629 1.38629
678 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
679 14 3.45893 0.12717 3.50729 2.84776 14 - -
680 1.38629 1.38629 1.38629 1.38629
681 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
682 15 3.11130 2.60957 3.15859 0.17506 15 - -
683 1.38629 1.38629 1.38629 1.38629
684 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
685 16 3.45893 0.12717 3.50729 2.84776 16 - -
686 1.38629 1.38629 1.38629 1.38629
687 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
688 17 3.45893 0.12717 3.50729 2.84776 17 - -
689 1.38629 1.38629 1.38629 1.38629
690 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
691 18 3.45893 0.12717 3.50729 2.84776 18 - -
692 1.38629 1.38629 1.38629 1.38629
693 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
694 19 0.13897 3.40269 2.81647 3.30648 19 - -
695 1.38629 1.38629 1.38629 1.38629
696 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
697 20 0.13897 3.40269 2.81647 3.30648 20 - -
698 1.38629 1.38629 1.38629 1.38629
699 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
700 21 3.11130 2.60957 3.15859 0.17506 21 - -
701 1.38629 1.38629 1.38629 1.38629
702 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
703 22 2.96311 3.61046 0.11471 3.51750 22 - -
704 1.38629 1.38629 1.38629 1.38629
705 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
706 23 2.96311 3.61046 0.11471 3.51750 23 - -
707 1.38629 1.38629 1.38629 1.38629
708 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
709 24 3.11130 2.60957 3.15859 0.17506 24 - -
710 1.38629 1.38629 1.38629 1.38629
711 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
712 25 2.37392 1.92307 0.39398 2.44920 25 - -
713 1.38629 1.38629 1.38629 1.38629
714 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
715 26 3.11130 2.60957 3.15859 0.17506 26 - -
716 1.38629 1.38629 1.38629 1.38629
717 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
718 27 2.96311 3.61046 0.11471 3.51750 27 - -
719 1.38629 1.38629 1.38629 1.38629
720 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
721 28 3.45893 0.12717 3.50729 2.84776 28 - -
722 1.38629 1.38629 1.38629 1.38629
723 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
724 29 3.11130 2.60957 3.15859 0.17506 29 - -
725 1.38629 1.38629 1.38629 1.38629
726 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
727 30 2.96311 3.61046 0.11471 3.51750 30 - -
728 1.38629 1.38629 1.38629 1.38629
729 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
730 31 3.45893 0.12717 3.50729 2.84776 31 - -
731 1.38629 1.38629 1.38629 1.38629
732 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
733 32 0.13897 3.40269 2.81647 3.30648 32 - -
734 1.38629 1.38629 1.38629 1.38629
735 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
736 33 3.11130 2.60957 3.15859 0.17506 33 - -
737 1.38629 1.38629 1.38629 1.38629
738 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
739 34 3.11130 2.60957 3.15859 0.17506 34 - -
740 1.38629 1.38629 1.38629 1.38629
741 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
742 35 3.11130 2.60957 3.15859 0.17506 35 - -
743 1.38629 1.38629 1.38629 1.38629
744 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
745 36 2.96311 3.61046 0.11471 3.51750 36 - -
746 1.38629 1.38629 1.38629 1.38629
747 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
748 37 0.13897 3.40269 2.81647 3.30648 37 - -
749 1.38629 1.38629 1.38629 1.38629
750 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
751 38 0.13897 3.40269 2.81647 3.30648 38 - -
752 1.38629 1.38629 1.38629 1.38629
753 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
754 39 0.13897 3.40269 2.81647 3.30648 39 - -
755 1.38629 1.38629 1.38629 1.38629
756 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
757 40 3.45893 0.12717 3.50729 2.84776 40 - -
758 1.38629 1.38629 1.38629 1.38629
759 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
760 41 0.13897 3.40269 2.81647 3.30648 41 - -
761 1.38629 1.38629 1.38629 1.38629
762 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
763 42 2.96311 3.61046 0.11471 3.51750 42 - -
764 1.38629 1.38629 1.38629 1.38629
765 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
766 43 0.13897 3.40269 2.81647 3.30648 43 - -
767 1.38629 1.38629 1.38629 1.38629
768 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
769 44 3.11130 2.60957 3.15859 0.17506 44 - -
770 1.38629 1.38629 1.38629 1.38629
771 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547
772 45 2.96311 3.61046 0.11471 3.51750 45 - -
773 1.38629 1.38629 1.38629 1.38629
774 0.01837 4.00616 * 1.46634 0.26236 0.00000 *
775 //
776 HMMER3/b [3.0 | March 2010]
777 NAME 3_End_Alveolata_58S_end_elevenb_long
778 LENG 45
779 ALPH DNA
780 RF no
781 CS no
782 MAP yes
783 DATE Wed Feb 29 22:49:36 2012
784 NSEQ 2
785 EFFN 2.000000
786 CKSUM 1545265678
787 STATS LOCAL MSV -7.4771 0.72838
788 STATS LOCAL VITERBI -8.1550 0.72838
789 STATS LOCAL FORWARD -3.6556 0.72838
790 HMM A C G T
791 m->m m->i m->d i->m i->i d->m d->d
792 COMPO 1.43027 1.45972 1.24052 1.43038
793 1.38629 1.38629 1.38629 1.38629
794 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
795 1 2.57915 2.25909 2.64442 0.28946 1 - -
796 1.38629 1.38629 1.38629 1.38629
797 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
798 2 2.53331 3.02441 0.20344 2.88069 2 - -
799 1.38629 1.38629 1.38629 1.38629
800 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
801 3 2.81865 0.23582 2.88868 2.35662 3 - -
802 1.38629 1.38629 1.38629 1.38629
803 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
804 4 2.81865 0.23582 2.88868 2.35662 4 - -
805 1.38629 1.38629 1.38629 1.38629
806 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
807 5 2.81865 0.23582 2.88868 2.35662 5 - -
808 1.38629 1.38629 1.38629 1.38629
809 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
810 6 2.57915 2.25909 2.64442 0.28946 6 - -
811 1.38629 1.38629 1.38629 1.38629
812 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
813 7 2.57915 2.25909 2.64442 0.28946 7 - -
814 1.38629 1.38629 1.38629 1.38629
815 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
816 8 2.53331 3.02441 0.20344 2.88069 8 - -
817 1.38629 1.38629 1.38629 1.38629
818 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
819 9 2.53331 3.02441 0.20344 2.88069 9 - -
820 1.38629 1.38629 1.38629 1.38629
821 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
822 10 2.53331 3.02441 0.20344 2.88069 10 - -
823 1.38629 1.38629 1.38629 1.38629
824 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
825 11 0.23862 2.84929 2.43386 2.70756 11 - -
826 1.38629 1.38629 1.38629 1.38629
827 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
828 12 2.81865 0.23582 2.88868 2.35662 12 - -
829 1.38629 1.38629 1.38629 1.38629
830 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
831 13 0.23862 2.84929 2.43386 2.70756 13 - -
832 1.38629 1.38629 1.38629 1.38629
833 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
834 14 2.53331 3.02441 0.20344 2.88069 14 - -
835 1.38629 1.38629 1.38629 1.38629
836 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
837 15 2.57915 2.25909 2.64442 0.28946 15 - -
838 1.38629 1.38629 1.38629 1.38629
839 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
840 16 2.81865 0.23582 2.88868 2.35662 16 - -
841 1.38629 1.38629 1.38629 1.38629
842 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
843 17 2.81865 0.23582 2.88868 2.35662 17 - -
844 1.38629 1.38629 1.38629 1.38629
845 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
846 18 2.53331 3.02441 0.20344 2.88069 18 - -
847 1.38629 1.38629 1.38629 1.38629
848 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
849 19 0.23862 2.84929 2.43386 2.70756 19 - -
850 1.38629 1.38629 1.38629 1.38629
851 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
852 20 0.23862 2.84929 2.43386 2.70756 20 - -
853 1.38629 1.38629 1.38629 1.38629
854 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
855 21 0.23862 2.84929 2.43386 2.70756 21 - -
856 1.38629 1.38629 1.38629 1.38629
857 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
858 22 2.53331 3.02441 0.20344 2.88069 22 - -
859 1.38629 1.38629 1.38629 1.38629
860 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
861 23 2.53331 3.02441 0.20344 2.88069 23 - -
862 1.38629 1.38629 1.38629 1.38629
863 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
864 24 2.57915 2.25909 2.64442 0.28946 24 - -
865 1.38629 1.38629 1.38629 1.38629
866 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
867 25 2.53331 3.02441 0.20344 2.88069 25 - -
868 1.38629 1.38629 1.38629 1.38629
869 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
870 26 2.57915 2.25909 2.64442 0.28946 26 - -
871 1.38629 1.38629 1.38629 1.38629
872 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
873 27 2.53331 3.02441 0.20344 2.88069 27 - -
874 1.38629 1.38629 1.38629 1.38629
875 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
876 28 2.81865 0.23582 2.88868 2.35662 28 - -
877 1.38629 1.38629 1.38629 1.38629
878 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
879 29 2.57915 2.25909 2.64442 0.28946 29 - -
880 1.38629 1.38629 1.38629 1.38629
881 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
882 30 2.81865 0.23582 2.88868 2.35662 30 - -
883 1.38629 1.38629 1.38629 1.38629
884 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
885 31 0.23862 2.84929 2.43386 2.70756 31 - -
886 1.38629 1.38629 1.38629 1.38629
887 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
888 32 0.23862 2.84929 2.43386 2.70756 32 - -
889 1.38629 1.38629 1.38629 1.38629
890 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
891 33 2.57915 2.25909 2.64442 0.28946 33 - -
892 1.38629 1.38629 1.38629 1.38629
893 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
894 34 2.57915 2.25909 2.64442 0.28946 34 - -
895 1.38629 1.38629 1.38629 1.38629
896 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
897 35 2.57915 2.25909 2.64442 0.28946 35 - -
898 1.38629 1.38629 1.38629 1.38629
899 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
900 36 0.92825 2.28391 0.95698 2.13014 36 - -
901 1.38629 1.38629 1.38629 1.38629
902 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
903 37 0.23862 2.84929 2.43386 2.70756 37 - -
904 1.38629 1.38629 1.38629 1.38629
905 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
906 38 0.23862 2.84929 2.43386 2.70756 38 - -
907 1.38629 1.38629 1.38629 1.38629
908 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
909 39 2.53331 3.02441 0.20344 2.88069 39 - -
910 1.38629 1.38629 1.38629 1.38629
911 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
912 40 2.81865 0.23582 2.88868 2.35662 40 - -
913 1.38629 1.38629 1.38629 1.38629
914 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
915 41 0.23862 2.84929 2.43386 2.70756 41 - -
916 1.38629 1.38629 1.38629 1.38629
917 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
918 42 2.53331 3.02441 0.20344 2.88069 42 - -
919 1.38629 1.38629 1.38629 1.38629
920 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
921 43 2.57915 2.25909 2.64442 0.28946 43 - -
922 1.38629 1.38629 1.38629 1.38629
923 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
924 44 2.53331 3.02441 0.20344 2.88069 44 - -
925 1.38629 1.38629 1.38629 1.38629
926 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
927 45 2.81865 0.23582 2.88868 2.35662 45 - -
928 1.38629 1.38629 1.38629 1.38629
929 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
930 //
931 HMMER3/b [3.0 | March 2010]
932 NAME 3_End_Alveolata_58S_end_fifteena_long
933 LENG 45
934 ALPH DNA
935 RF no
936 CS no
937 MAP yes
938 DATE Wed Feb 29 22:54:25 2012
939 NSEQ 25
940 EFFN 3.335571
941 CKSUM 500672324
942 STATS LOCAL MSV -7.9016 0.71932
943 STATS LOCAL VITERBI -7.7396 0.71932
944 STATS LOCAL FORWARD -4.0992 0.71932
945 HMM A C G T
946 m->m m->i m->d i->m i->i d->m d->d
947 COMPO 1.72722 1.31020 1.32957 1.24527
948 1.38629 1.38629 1.38629 1.38629
949 0.03680 4.01378 4.01378 1.46634 0.26236 0.00000 *
950 1 3.09277 2.59779 3.14076 0.17801 1 - -
951 1.38629 1.38629 1.38629 1.38629
952 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
953 2 2.95040 3.59193 0.11670 3.49704 2 - -
954 1.38629 1.38629 1.38629 1.38629
955 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
956 3 2.95040 3.59193 0.11670 3.49704 3 - -
957 1.38629 1.38629 1.38629 1.38629
958 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
959 4 3.43785 0.12964 3.48711 2.83245 4 - -
960 1.38629 1.38629 1.38629 1.38629
961 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
962 5 2.95040 3.59193 0.11670 3.49704 5 - -
963 1.38629 1.38629 1.38629 1.38629
964 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
965 6 3.43785 0.12964 3.48711 2.83245 6 - -
966 1.38629 1.38629 1.38629 1.38629
967 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
968 7 3.09277 2.59779 3.14076 0.17801 7 - -
969 1.38629 1.38629 1.38629 1.38629
970 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
971 8 2.54795 2.32143 0.27713 2.72309 8 - -
972 1.38629 1.38629 1.38629 1.38629
973 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
974 9 3.09277 2.59779 3.14076 0.17801 9 - -
975 1.38629 1.38629 1.38629 1.38629
976 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
977 10 3.09277 2.59779 3.14076 0.17801 10 - -
978 1.38629 1.38629 1.38629 1.38629
979 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
980 11 2.95040 3.59193 0.11670 3.49704 11 - -
981 1.38629 1.38629 1.38629 1.38629
982 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
983 12 2.95040 3.59193 0.11670 3.49704 12 - -
984 1.38629 1.38629 1.38629 1.38629
985 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
986 13 2.95040 3.59193 0.11670 3.49704 13 - -
987 1.38629 1.38629 1.38629 1.38629
988 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
989 14 0.14135 3.38438 2.80460 3.28643 14 - -
990 1.38629 1.38629 1.38629 1.38629
991 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
992 15 3.43785 0.12964 3.48711 2.83245 15 - -
993 1.38629 1.38629 1.38629 1.38629
994 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
995 16 3.09277 2.59779 3.14076 0.17801 16 - -
996 1.38629 1.38629 1.38629 1.38629
997 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
998 17 0.14135 3.38438 2.80460 3.28643 17 - -
999 1.38629 1.38629 1.38629 1.38629
1000 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1001 18 3.43785 0.12964 3.48711 2.83245 18 - -
1002 1.38629 1.38629 1.38629 1.38629
1003 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1004 19 3.43785 0.12964 3.48711 2.83245 19 - -
1005 1.38629 1.38629 1.38629 1.38629
1006 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1007 20 3.43785 0.12964 3.48711 2.83245 20 - -
1008 1.38629 1.38629 1.38629 1.38629
1009 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1010 21 0.14135 3.38438 2.80460 3.28643 21 - -
1011 1.38629 1.38629 1.38629 1.38629
1012 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1013 22 0.14135 3.38438 2.80460 3.28643 22 - -
1014 1.38629 1.38629 1.38629 1.38629
1015 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1016 23 3.43785 0.12964 3.48711 2.83245 23 - -
1017 1.38629 1.38629 1.38629 1.38629
1018 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1019 24 0.14135 3.38438 2.80460 3.28643 24 - -
1020 1.38629 1.38629 1.38629 1.38629
1021 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1022 25 2.95040 3.59193 0.11670 3.49704 25 - -
1023 1.38629 1.38629 1.38629 1.38629
1024 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1025 26 3.43785 0.12964 3.48711 2.83245 26 - -
1026 1.38629 1.38629 1.38629 1.38629
1027 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1028 27 0.14135 3.38438 2.80460 3.28643 27 - -
1029 1.38629 1.38629 1.38629 1.38629
1030 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1031 28 3.43785 0.12964 3.48711 2.83245 28 - -
1032 1.38629 1.38629 1.38629 1.38629
1033 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1034 29 2.95040 3.59193 0.11670 3.49704 29 - -
1035 1.38629 1.38629 1.38629 1.38629
1036 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1037 30 3.09277 2.59779 3.14076 0.17801 30 - -
1038 1.38629 1.38629 1.38629 1.38629
1039 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1040 31 3.43785 0.12964 3.48711 2.83245 31 - -
1041 1.38629 1.38629 1.38629 1.38629
1042 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1043 32 3.09277 2.59779 3.14076 0.17801 32 - -
1044 1.38629 1.38629 1.38629 1.38629
1045 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1046 33 2.95040 3.59193 0.11670 3.49704 33 - -
1047 1.38629 1.38629 1.38629 1.38629
1048 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1049 34 3.09277 2.59779 3.14076 0.17801 34 - -
1050 1.38629 1.38629 1.38629 1.38629
1051 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1052 35 3.09277 2.59779 3.14076 0.17801 35 - -
1053 1.38629 1.38629 1.38629 1.38629
1054 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1055 36 3.09277 2.59779 3.14076 0.17801 36 - -
1056 1.38629 1.38629 1.38629 1.38629
1057 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1058 37 3.43785 0.12964 3.48711 2.83245 37 - -
1059 1.38629 1.38629 1.38629 1.38629
1060 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1061 38 0.14135 3.38438 2.80460 3.28643 38 - -
1062 1.38629 1.38629 1.38629 1.38629
1063 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1064 39 2.95040 3.59193 0.11670 3.49704 39 - -
1065 1.38629 1.38629 1.38629 1.38629
1066 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1067 40 3.09277 2.59779 3.14076 0.17801 40 - -
1068 1.38629 1.38629 1.38629 1.38629
1069 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1070 41 2.95040 3.59193 0.11670 3.49704 41 - -
1071 1.38629 1.38629 1.38629 1.38629
1072 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1073 42 3.09277 2.59779 3.14076 0.17801 42 - -
1074 1.38629 1.38629 1.38629 1.38629
1075 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1076 43 3.43785 0.12964 3.48711 2.83245 43 - -
1077 1.38629 1.38629 1.38629 1.38629
1078 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1079 44 3.09277 2.59779 3.14076 0.17801 44 - -
1080 1.38629 1.38629 1.38629 1.38629
1081 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547
1082 45 3.09277 2.59779 3.14076 0.17801 45 - -
1083 1.38629 1.38629 1.38629 1.38629
1084 0.01857 3.99555 * 1.46634 0.26236 0.00000 *
1085 //
1086 HMMER3/b [3.0 | March 2010]
1087 NAME 3_End_Alveolata_58S_end_fifteenb_long
1088 LENG 45
1089 ALPH DNA
1090 RF no
1091 CS no
1092 MAP yes
1093 DATE Wed Feb 29 22:54:32 2012
1094 NSEQ 16
1095 EFFN 3.605469
1096 CKSUM 2100785171
1097 STATS LOCAL MSV -7.3453 0.71933
1098 STATS LOCAL VITERBI -7.7419 0.71933
1099 STATS LOCAL FORWARD -4.2360 0.71933
1100 HMM A C G T
1101 m->m m->i m->d i->m i->i d->m d->d
1102 COMPO 1.83616 1.45443 1.24425 1.14294
1103 1.38629 1.38629 1.38629 1.38629
1104 0.03506 4.06139 4.06139 1.46634 0.26236 0.00000 *
1105 1 3.17670 2.65106 3.22145 0.16511 1 - -
1106 1.38629 1.38629 1.38629 1.38629
1107 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1108 2 3.00689 3.67468 0.10808 3.58855 2 - -
1109 1.38629 1.38629 1.38629 1.38629
1110 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1111 3 3.00689 3.67468 0.10808 3.58855 3 - -
1112 1.38629 1.38629 1.38629 1.38629
1113 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1114 4 3.53238 0.11897 3.57752 2.90072 4 - -
1115 1.38629 1.38629 1.38629 1.38629
1116 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1117 5 3.00689 3.67468 0.10808 3.58855 5 - -
1118 1.38629 1.38629 1.38629 1.38629
1119 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1120 6 3.53238 0.11897 3.57752 2.90072 6 - -
1121 1.38629 1.38629 1.38629 1.38629
1122 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1123 7 3.17670 2.65106 3.22145 0.16511 7 - -
1124 1.38629 1.38629 1.38629 1.38629
1125 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1126 8 3.00689 3.67468 0.10808 3.58855 8 - -
1127 1.38629 1.38629 1.38629 1.38629
1128 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1129 9 3.17670 2.65106 3.22145 0.16511 9 - -
1130 1.38629 1.38629 1.38629 1.38629
1131 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1132 10 3.17670 2.65106 3.22145 0.16511 10 - -
1133 1.38629 1.38629 1.38629 1.38629
1134 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1135 11 3.00689 3.67468 0.10808 3.58855 11 - -
1136 1.38629 1.38629 1.38629 1.38629
1137 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1138 12 3.00689 3.67468 0.10808 3.58855 12 - -
1139 1.38629 1.38629 1.38629 1.38629
1140 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1141 13 3.00689 3.67468 0.10808 3.58855 13 - -
1142 1.38629 1.38629 1.38629 1.38629
1143 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1144 14 0.13100 3.46667 2.85777 3.37664 14 - -
1145 1.38629 1.38629 1.38629 1.38629
1146 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1147 15 3.17670 2.65106 3.22145 0.16511 15 - -
1148 1.38629 1.38629 1.38629 1.38629
1149 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1150 16 3.17670 2.65106 3.22145 0.16511 16 - -
1151 1.38629 1.38629 1.38629 1.38629
1152 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1153 17 0.13100 3.46667 2.85777 3.37664 17 - -
1154 1.38629 1.38629 1.38629 1.38629
1155 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1156 18 2.46082 0.82174 2.53269 0.92754 18 - -
1157 1.38629 1.38629 1.38629 1.38629
1158 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1159 19 3.53238 0.11897 3.57752 2.90072 19 - -
1160 1.38629 1.38629 1.38629 1.38629
1161 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1162 20 2.46082 0.82174 2.53269 0.92754 20 - -
1163 1.38629 1.38629 1.38629 1.38629
1164 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1165 21 3.00689 3.67468 0.10808 3.58855 21 - -
1166 1.38629 1.38629 1.38629 1.38629
1167 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1168 22 0.24265 3.10343 2.11836 2.98922 22 - -
1169 1.38629 1.38629 1.38629 1.38629
1170 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1171 23 3.53238 0.11897 3.57752 2.90072 23 - -
1172 1.38629 1.38629 1.38629 1.38629
1173 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1174 24 0.13100 3.46667 2.85777 3.37664 24 - -
1175 1.38629 1.38629 1.38629 1.38629
1176 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1177 25 3.00689 3.67468 0.10808 3.58855 25 - -
1178 1.38629 1.38629 1.38629 1.38629
1179 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1180 26 3.53238 0.11897 3.57752 2.90072 26 - -
1181 1.38629 1.38629 1.38629 1.38629
1182 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1183 27 0.13100 3.46667 2.85777 3.37664 27 - -
1184 1.38629 1.38629 1.38629 1.38629
1185 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1186 28 3.53238 0.11897 3.57752 2.90072 28 - -
1187 1.38629 1.38629 1.38629 1.38629
1188 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1189 29 3.00689 3.67468 0.10808 3.58855 29 - -
1190 1.38629 1.38629 1.38629 1.38629
1191 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1192 30 3.17670 2.65106 3.22145 0.16511 30 - -
1193 1.38629 1.38629 1.38629 1.38629
1194 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1195 31 3.53238 0.11897 3.57752 2.90072 31 - -
1196 1.38629 1.38629 1.38629 1.38629
1197 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1198 32 3.17670 2.65106 3.22145 0.16511 32 - -
1199 1.38629 1.38629 1.38629 1.38629
1200 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1201 33 3.00689 3.67468 0.10808 3.58855 33 - -
1202 1.38629 1.38629 1.38629 1.38629
1203 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1204 34 3.17670 2.65106 3.22145 0.16511 34 - -
1205 1.38629 1.38629 1.38629 1.38629
1206 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1207 35 3.17670 2.65106 3.22145 0.16511 35 - -
1208 1.38629 1.38629 1.38629 1.38629
1209 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1210 36 3.17670 2.65106 3.22145 0.16511 36 - -
1211 1.38629 1.38629 1.38629 1.38629
1212 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1213 37 3.53238 0.11897 3.57752 2.90072 37 - -
1214 1.38629 1.38629 1.38629 1.38629
1215 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1216 38 0.13100 3.46667 2.85777 3.37664 38 - -
1217 1.38629 1.38629 1.38629 1.38629
1218 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1219 39 3.00689 3.67468 0.10808 3.58855 39 - -
1220 1.38629 1.38629 1.38629 1.38629
1221 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1222 40 3.17670 2.65106 3.22145 0.16511 40 - -
1223 1.38629 1.38629 1.38629 1.38629
1224 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1225 41 3.00689 3.67468 0.10808 3.58855 41 - -
1226 1.38629 1.38629 1.38629 1.38629
1227 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1228 42 3.17670 2.65106 3.22145 0.16511 42 - -
1229 1.38629 1.38629 1.38629 1.38629
1230 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1231 43 3.53238 0.11897 3.57752 2.90072 43 - -
1232 1.38629 1.38629 1.38629 1.38629
1233 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1234 44 3.17670 2.65106 3.22145 0.16511 44 - -
1235 1.38629 1.38629 1.38629 1.38629
1236 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547
1237 45 3.17670 2.65106 3.22145 0.16511 45 - -
1238 1.38629 1.38629 1.38629 1.38629
1239 0.01768 4.04401 * 1.46634 0.26236 0.00000 *
1240 //
1241 HMMER3/b [3.0 | March 2010]
1242 NAME 3_End_Alveolata_58S_end_fifteenc_long
1243 LENG 45
1244 ALPH DNA
1245 RF no
1246 CS no
1247 MAP yes
1248 DATE Wed Feb 29 22:54:38 2012
1249 NSEQ 6
1250 EFFN 3.237305
1251 CKSUM 442242702
1252 STATS LOCAL MSV -8.0313 0.71932
1253 STATS LOCAL VITERBI -7.8597 0.71932
1254 STATS LOCAL FORWARD -3.7770 0.71932
1255 HMM A C G T
1256 m->m m->i m->d i->m i->i d->m d->d
1257 COMPO 2.05939 1.25473 1.20217 1.24906
1258 1.38629 1.38629 1.38629 1.38629
1259 0.03748 3.99587 3.99587 1.46634 0.26236 0.00000 *
1260 1 3.06071 2.57738 3.10992 0.18324 1 - -
1261 1.38629 1.38629 1.38629 1.38629
1262 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1263 2 2.92809 3.55954 0.12029 3.46131 2 - -
1264 1.38629 1.38629 1.38629 1.38629
1265 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1266 3 2.92809 3.55954 0.12029 3.46131 3 - -
1267 1.38629 1.38629 1.38629 1.38629
1268 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1269 4 3.40113 0.13409 3.45193 2.80566 4 - -
1270 1.38629 1.38629 1.38629 1.38629
1271 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1272 5 2.92809 3.55954 0.12029 3.46131 5 - -
1273 1.38629 1.38629 1.38629 1.38629
1274 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1275 6 3.40113 0.13409 3.45193 2.80566 6 - -
1276 1.38629 1.38629 1.38629 1.38629
1277 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1278 7 3.40113 0.13409 3.45193 2.80566 7 - -
1279 1.38629 1.38629 1.38629 1.38629
1280 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1281 8 2.92809 3.55954 0.12029 3.46131 8 - -
1282 1.38629 1.38629 1.38629 1.38629
1283 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1284 9 3.40113 0.13409 3.45193 2.80566 9 - -
1285 1.38629 1.38629 1.38629 1.38629
1286 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1287 10 3.06071 2.57738 3.10992 0.18324 10 - -
1288 1.38629 1.38629 1.38629 1.38629
1289 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1290 11 2.92809 3.55954 0.12029 3.46131 11 - -
1291 1.38629 1.38629 1.38629 1.38629
1292 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1293 12 2.92809 3.55954 0.12029 3.46131 12 - -
1294 1.38629 1.38629 1.38629 1.38629
1295 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1296 13 2.92809 3.55954 0.12029 3.46131 13 - -
1297 1.38629 1.38629 1.38629 1.38629
1298 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1299 14 0.14561 3.35254 2.78388 3.25159 14 - -
1300 1.38629 1.38629 1.38629 1.38629
1301 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1302 15 3.06071 2.57738 3.10992 0.18324 15 - -
1303 1.38629 1.38629 1.38629 1.38629
1304 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1305 16 3.06071 2.57738 3.10992 0.18324 16 - -
1306 1.38629 1.38629 1.38629 1.38629
1307 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1308 17 3.06071 2.57738 3.10992 0.18324 17 - -
1309 1.38629 1.38629 1.38629 1.38629
1310 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1311 18 3.40113 0.13409 3.45193 2.80566 18 - -
1312 1.38629 1.38629 1.38629 1.38629
1313 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1314 19 3.40113 0.13409 3.45193 2.80566 19 - -
1315 1.38629 1.38629 1.38629 1.38629
1316 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1317 20 3.40113 0.13409 3.45193 2.80566 20 - -
1318 1.38629 1.38629 1.38629 1.38629
1319 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1320 21 2.92809 3.55954 0.12029 3.46131 21 - -
1321 1.38629 1.38629 1.38629 1.38629
1322 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1323 22 2.92809 3.55954 0.12029 3.46131 22 - -
1324 1.38629 1.38629 1.38629 1.38629
1325 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1326 23 3.40113 0.13409 3.45193 2.80566 23 - -
1327 1.38629 1.38629 1.38629 1.38629
1328 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1329 24 0.14561 3.35254 2.78388 3.25159 24 - -
1330 1.38629 1.38629 1.38629 1.38629
1331 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1332 25 2.92809 3.55954 0.12029 3.46131 25 - -
1333 1.38629 1.38629 1.38629 1.38629
1334 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1335 26 3.40113 0.13409 3.45193 2.80566 26 - -
1336 1.38629 1.38629 1.38629 1.38629
1337 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1338 27 0.14561 3.35254 2.78388 3.25159 27 - -
1339 1.38629 1.38629 1.38629 1.38629
1340 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1341 28 3.40113 0.13409 3.45193 2.80566 28 - -
1342 1.38629 1.38629 1.38629 1.38629
1343 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1344 29 2.92809 3.55954 0.12029 3.46131 29 - -
1345 1.38629 1.38629 1.38629 1.38629
1346 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1347 30 3.06071 2.57738 3.10992 0.18324 30 - -
1348 1.38629 1.38629 1.38629 1.38629
1349 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1350 31 3.40113 0.13409 3.45193 2.80566 31 - -
1351 1.38629 1.38629 1.38629 1.38629
1352 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1353 32 3.06071 2.57738 3.10992 0.18324 32 - -
1354 1.38629 1.38629 1.38629 1.38629
1355 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1356 33 2.92809 3.55954 0.12029 3.46131 33 - -
1357 1.38629 1.38629 1.38629 1.38629
1358 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1359 34 3.06071 2.57738 3.10992 0.18324 34 - -
1360 1.38629 1.38629 1.38629 1.38629
1361 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1362 35 3.06071 2.57738 3.10992 0.18324 35 - -
1363 1.38629 1.38629 1.38629 1.38629
1364 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1365 36 3.06071 2.57738 3.10992 0.18324 36 - -
1366 1.38629 1.38629 1.38629 1.38629
1367 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1368 37 3.40113 0.13409 3.45193 2.80566 37 - -
1369 1.38629 1.38629 1.38629 1.38629
1370 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1371 38 0.14561 3.35254 2.78388 3.25159 38 - -
1372 1.38629 1.38629 1.38629 1.38629
1373 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1374 39 2.92809 3.55954 0.12029 3.46131 39 - -
1375 1.38629 1.38629 1.38629 1.38629
1376 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1377 40 3.06071 2.57738 3.10992 0.18324 40 - -
1378 1.38629 1.38629 1.38629 1.38629
1379 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1380 41 2.92809 3.55954 0.12029 3.46131 41 - -
1381 1.38629 1.38629 1.38629 1.38629
1382 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1383 42 3.06071 2.57738 3.10992 0.18324 42 - -
1384 1.38629 1.38629 1.38629 1.38629
1385 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1386 43 3.40113 0.13409 3.45193 2.80566 43 - -
1387 1.38629 1.38629 1.38629 1.38629
1388 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1389 44 3.06071 2.57738 3.10992 0.18324 44 - -
1390 1.38629 1.38629 1.38629 1.38629
1391 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547
1392 45 3.06071 2.57738 3.10992 0.18324 45 - -
1393 1.38629 1.38629 1.38629 1.38629
1394 0.01891 3.97731 * 1.46634 0.26236 0.00000 *
1395 //
1396 HMMER3/b [3.0 | March 2010]
1397 NAME 3_End_Alveolata_58S_end_fifteend_long
1398 LENG 45
1399 ALPH DNA
1400 RF no
1401 CS no
1402 MAP yes
1403 DATE Wed Feb 29 22:54:44 2012
1404 NSEQ 7
1405 EFFN 3.298340
1406 CKSUM 2869266091
1407 STATS LOCAL MSV -8.1459 0.71931
1408 STATS LOCAL VITERBI -7.9055 0.71931
1409 STATS LOCAL FORWARD -3.8325 0.71931
1410 HMM A C G T
1411 m->m m->i m->d i->m i->i d->m d->d
1412 COMPO 2.06625 1.24709 1.32281 1.14065
1413 1.38629 1.38629 1.38629 1.38629
1414 0.03705 4.00703 4.00703 1.46634 0.26236 0.00000 *
1415 1 2.94206 3.57981 0.11803 3.48366 1 - -
1416 1.38629 1.38629 1.38629 1.38629
1417 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1418 2 2.94206 3.57981 0.11803 3.48366 2 - -
1419 1.38629 1.38629 1.38629 1.38629
1420 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1421 3 3.42409 0.13129 3.47393 2.82243 3 - -
1422 1.38629 1.38629 1.38629 1.38629
1423 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1424 4 2.94206 3.57981 0.11803 3.48366 4 - -
1425 1.38629 1.38629 1.38629 1.38629
1426 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1427 5 3.42409 0.13129 3.47393 2.82243 5 - -
1428 1.38629 1.38629 1.38629 1.38629
1429 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1430 6 3.08072 2.59012 3.12917 0.17995 6 - -
1431 1.38629 1.38629 1.38629 1.38629
1432 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1433 7 3.08072 2.59012 3.12917 0.17995 7 - -
1434 1.38629 1.38629 1.38629 1.38629
1435 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1436 8 3.42409 0.13129 3.47393 2.82243 8 - -
1437 1.38629 1.38629 1.38629 1.38629
1438 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1439 9 3.08072 2.59012 3.12917 0.17995 9 - -
1440 1.38629 1.38629 1.38629 1.38629
1441 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1442 10 2.94206 3.57981 0.11803 3.48366 10 - -
1443 1.38629 1.38629 1.38629 1.38629
1444 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1445 11 2.94206 3.57981 0.11803 3.48366 11 - -
1446 1.38629 1.38629 1.38629 1.38629
1447 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1448 12 2.94206 3.57981 0.11803 3.48366 12 - -
1449 1.38629 1.38629 1.38629 1.38629
1450 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1451 13 0.14293 3.37244 2.79684 3.27336 13 - -
1452 1.38629 1.38629 1.38629 1.38629
1453 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1454 14 3.08072 2.59012 3.12917 0.17995 14 - -
1455 1.38629 1.38629 1.38629 1.38629
1456 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1457 15 3.08072 2.59012 3.12917 0.17995 15 - -
1458 1.38629 1.38629 1.38629 1.38629
1459 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1460 16 3.08072 2.59012 3.12917 0.17995 16 - -
1461 1.38629 1.38629 1.38629 1.38629
1462 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1463 17 3.08072 2.59012 3.12917 0.17995 17 - -
1464 1.38629 1.38629 1.38629 1.38629
1465 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1466 18 3.42409 0.13129 3.47393 2.82243 18 - -
1467 1.38629 1.38629 1.38629 1.38629
1468 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1469 19 3.42409 0.13129 3.47393 2.82243 19 - -
1470 1.38629 1.38629 1.38629 1.38629
1471 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1472 20 3.42409 0.13129 3.47393 2.82243 20 - -
1473 1.38629 1.38629 1.38629 1.38629
1474 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1475 21 3.42409 0.13129 3.47393 2.82243 21 - -
1476 1.38629 1.38629 1.38629 1.38629
1477 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1478 22 2.94206 3.57981 0.11803 3.48366 22 - -
1479 1.38629 1.38629 1.38629 1.38629
1480 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1481 23 3.08072 2.59012 3.12917 0.17995 23 - -
1482 1.38629 1.38629 1.38629 1.38629
1483 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1484 24 0.14293 3.37244 2.79684 3.27336 24 - -
1485 1.38629 1.38629 1.38629 1.38629
1486 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1487 25 2.94206 3.57981 0.11803 3.48366 25 - -
1488 1.38629 1.38629 1.38629 1.38629
1489 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1490 26 3.42409 0.13129 3.47393 2.82243 26 - -
1491 1.38629 1.38629 1.38629 1.38629
1492 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1493 27 0.14293 3.37244 2.79684 3.27336 27 - -
1494 1.38629 1.38629 1.38629 1.38629
1495 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1496 28 3.42409 0.13129 3.47393 2.82243 28 - -
1497 1.38629 1.38629 1.38629 1.38629
1498 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1499 29 2.94206 3.57981 0.11803 3.48366 29 - -
1500 1.38629 1.38629 1.38629 1.38629
1501 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1502 30 3.08072 2.59012 3.12917 0.17995 30 - -
1503 1.38629 1.38629 1.38629 1.38629
1504 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1505 31 3.42409 0.13129 3.47393 2.82243 31 - -
1506 1.38629 1.38629 1.38629 1.38629
1507 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1508 32 3.08072 2.59012 3.12917 0.17995 32 - -
1509 1.38629 1.38629 1.38629 1.38629
1510 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1511 33 2.94206 3.57981 0.11803 3.48366 33 - -
1512 1.38629 1.38629 1.38629 1.38629
1513 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1514 34 3.08072 2.59012 3.12917 0.17995 34 - -
1515 1.38629 1.38629 1.38629 1.38629
1516 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1517 35 3.08072 2.59012 3.12917 0.17995 35 - -
1518 1.38629 1.38629 1.38629 1.38629
1519 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1520 36 3.08072 2.59012 3.12917 0.17995 36 - -
1521 1.38629 1.38629 1.38629 1.38629
1522 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1523 37 3.42409 0.13129 3.47393 2.82243 37 - -
1524 1.38629 1.38629 1.38629 1.38629
1525 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1526 38 0.14293 3.37244 2.79684 3.27336 38 - -
1527 1.38629 1.38629 1.38629 1.38629
1528 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1529 39 2.94206 3.57981 0.11803 3.48366 39 - -
1530 1.38629 1.38629 1.38629 1.38629
1531 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1532 40 3.08072 2.59012 3.12917 0.17995 40 - -
1533 1.38629 1.38629 1.38629 1.38629
1534 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1535 41 2.94206 3.57981 0.11803 3.48366 41 - -
1536 1.38629 1.38629 1.38629 1.38629
1537 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1538 42 3.08072 2.59012 3.12917 0.17995 42 - -
1539 1.38629 1.38629 1.38629 1.38629
1540 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1541 43 3.42409 0.13129 3.47393 2.82243 43 - -
1542 1.38629 1.38629 1.38629 1.38629
1543 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1544 44 3.08072 2.59012 3.12917 0.17995 44 - -
1545 1.38629 1.38629 1.38629 1.38629
1546 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547
1547 45 3.42409 0.13129 3.47393 2.82243 45 - -
1548 1.38629 1.38629 1.38629 1.38629
1549 0.01870 3.98868 * 1.46634 0.26236 0.00000 *
1550 //
1551 HMMER3/b [3.0 | March 2010]
1552 NAME 3_End_Alveolata_58S_end_fifteene_long
1553 LENG 45
1554 ALPH DNA
1555 RF no
1556 CS no
1557 MAP yes
1558 DATE Wed Feb 29 22:54:49 2012
1559 NSEQ 14
1560 EFFN 3.612793
1561 CKSUM 3599068610
1562 STATS LOCAL MSV -7.2495 0.71932
1563 STATS LOCAL VITERBI -7.7818 0.71932
1564 STATS LOCAL FORWARD -3.9403 0.71932
1565 HMM A C G T
1566 m->m m->i m->d i->m i->i d->m d->d
1567 COMPO 2.01810 1.29360 1.24959 1.18356
1568 1.38629 1.38629 1.38629 1.38629
1569 0.03501 4.06265 4.06265 1.46634 0.26236 0.00000 *
1570 1 3.17890 2.65245 3.22356 0.16478 1 - -
1571 1.38629 1.38629 1.38629 1.38629
1572 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1573 2 3.00833 3.67681 0.10787 3.59090 2 - -
1574 1.38629 1.38629 1.38629 1.38629
1575 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1576 3 3.00833 3.67681 0.10787 3.59090 3 - -
1577 1.38629 1.38629 1.38629 1.38629
1578 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1579 4 3.53482 0.11871 3.57985 2.90247 4 - -
1580 1.38629 1.38629 1.38629 1.38629
1581 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1582 5 3.00833 3.67681 0.10787 3.59090 5 - -
1583 1.38629 1.38629 1.38629 1.38629
1584 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1585 6 3.53482 0.11871 3.57985 2.90247 6 - -
1586 1.38629 1.38629 1.38629 1.38629
1587 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1588 7 3.17890 2.65245 3.22356 0.16478 7 - -
1589 1.38629 1.38629 1.38629 1.38629
1590 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1591 8 3.00833 3.67681 0.10787 3.59090 8 - -
1592 1.38629 1.38629 1.38629 1.38629
1593 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1594 9 3.53482 0.11871 3.57985 2.90247 9 - -
1595 1.38629 1.38629 1.38629 1.38629
1596 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1597 10 0.90681 1.49378 2.06689 1.40614 10 - -
1598 1.38629 1.38629 1.38629 1.38629
1599 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1600 11 3.00833 3.67681 0.10787 3.59090 11 - -
1601 1.38629 1.38629 1.38629 1.38629
1602 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1603 12 3.00833 3.67681 0.10787 3.59090 12 - -
1604 1.38629 1.38629 1.38629 1.38629
1605 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1606 13 3.00833 3.67681 0.10787 3.59090 13 - -
1607 1.38629 1.38629 1.38629 1.38629
1608 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1609 14 0.13074 3.46880 2.85915 3.37898 14 - -
1610 1.38629 1.38629 1.38629 1.38629
1611 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1612 15 2.82437 1.87604 2.88303 0.31267 15 - -
1613 1.38629 1.38629 1.38629 1.38629
1614 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1615 16 3.17890 2.65245 3.22356 0.16478 16 - -
1616 1.38629 1.38629 1.38629 1.38629
1617 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1618 17 3.17890 2.65245 3.22356 0.16478 17 - -
1619 1.38629 1.38629 1.38629 1.38629
1620 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1621 18 3.53482 0.11871 3.57985 2.90247 18 - -
1622 1.38629 1.38629 1.38629 1.38629
1623 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1624 19 2.99789 0.26576 3.06012 1.99066 19 - -
1625 1.38629 1.38629 1.38629 1.38629
1626 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1627 20 3.53482 0.11871 3.57985 2.90247 20 - -
1628 1.38629 1.38629 1.38629 1.38629
1629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1630 21 3.17890 2.65245 3.22356 0.16478 21 - -
1631 1.38629 1.38629 1.38629 1.38629
1632 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1633 22 3.00833 3.67681 0.10787 3.59090 22 - -
1634 1.38629 1.38629 1.38629 1.38629
1635 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1636 23 3.53482 0.11871 3.57985 2.90247 23 - -
1637 1.38629 1.38629 1.38629 1.38629
1638 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1639 24 0.13074 3.46880 2.85915 3.37898 24 - -
1640 1.38629 1.38629 1.38629 1.38629
1641 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1642 25 3.00833 3.67681 0.10787 3.59090 25 - -
1643 1.38629 1.38629 1.38629 1.38629
1644 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1645 26 3.53482 0.11871 3.57985 2.90247 26 - -
1646 1.38629 1.38629 1.38629 1.38629
1647 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1648 27 0.13074 3.46880 2.85915 3.37898 27 - -
1649 1.38629 1.38629 1.38629 1.38629
1650 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1651 28 3.53482 0.11871 3.57985 2.90247 28 - -
1652 1.38629 1.38629 1.38629 1.38629
1653 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1654 29 3.00833 3.67681 0.10787 3.59090 29 - -
1655 1.38629 1.38629 1.38629 1.38629
1656 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1657 30 3.17890 2.65245 3.22356 0.16478 30 - -
1658 1.38629 1.38629 1.38629 1.38629
1659 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1660 31 3.53482 0.11871 3.57985 2.90247 31 - -
1661 1.38629 1.38629 1.38629 1.38629
1662 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1663 32 3.17890 2.65245 3.22356 0.16478 32 - -
1664 1.38629 1.38629 1.38629 1.38629
1665 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1666 33 3.00833 3.67681 0.10787 3.59090 33 - -
1667 1.38629 1.38629 1.38629 1.38629
1668 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1669 34 3.17890 2.65245 3.22356 0.16478 34 - -
1670 1.38629 1.38629 1.38629 1.38629
1671 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1672 35 3.17890 2.65245 3.22356 0.16478 35 - -
1673 1.38629 1.38629 1.38629 1.38629
1674 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1675 36 3.17890 2.65245 3.22356 0.16478 36 - -
1676 1.38629 1.38629 1.38629 1.38629
1677 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1678 37 3.53482 0.11871 3.57985 2.90247 37 - -
1679 1.38629 1.38629 1.38629 1.38629
1680 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1681 38 0.13074 3.46880 2.85915 3.37898 38 - -
1682 1.38629 1.38629 1.38629 1.38629
1683 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1684 39 3.00833 3.67681 0.10787 3.59090 39 - -
1685 1.38629 1.38629 1.38629 1.38629
1686 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1687 40 3.17890 2.65245 3.22356 0.16478 40 - -
1688 1.38629 1.38629 1.38629 1.38629
1689 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1690 41 3.00833 3.67681 0.10787 3.59090 41 - -
1691 1.38629 1.38629 1.38629 1.38629
1692 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1693 42 3.17890 2.65245 3.22356 0.16478 42 - -
1694 1.38629 1.38629 1.38629 1.38629
1695 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1696 43 3.53482 0.11871 3.57985 2.90247 43 - -
1697 1.38629 1.38629 1.38629 1.38629
1698 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1699 44 3.17890 2.65245 3.22356 0.16478 44 - -
1700 1.38629 1.38629 1.38629 1.38629
1701 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
1702 45 2.82437 1.87604 2.88303 0.31267 45 - -
1703 1.38629 1.38629 1.38629 1.38629
1704 0.01766 4.04529 * 1.46634 0.26236 0.00000 *
1705 //
1706 HMMER3/b [3.0 | March 2010]
1707 NAME 3_End_Alveolata_58S_end_fifteenf_long
1708 LENG 45
1709 ALPH DNA
1710 RF no
1711 CS no
1712 MAP yes
1713 DATE Wed Feb 29 22:54:55 2012
1714 NSEQ 3
1715 EFFN 3.000000
1716 CKSUM 4191745197
1717 STATS LOCAL MSV -8.0134 0.72148
1718 STATS LOCAL VITERBI -7.9970 0.72148
1719 STATS LOCAL FORWARD -3.9305 0.72148
1720 HMM A C G T
1721 m->m m->i m->d i->m i->i d->m d->d
1722 COMPO 1.88034 1.41850 1.31106 1.09109
1723 1.38629 1.38629 1.38629 1.38629
1724 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
1725 1 2.86982 3.47591 0.13017 3.36931 1 - -
1726 1.38629 1.38629 1.38629 1.38629
1727 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1728 2 2.86982 3.47591 0.13017 3.36931 2 - -
1729 1.38629 1.38629 1.38629 1.38629
1730 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1731 3 3.30705 0.14631 3.36166 2.73626 3 - -
1732 1.38629 1.38629 1.38629 1.38629
1733 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1734 4 0.15719 3.27118 2.73043 3.16274 4 - -
1735 1.38629 1.38629 1.38629 1.38629
1736 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1737 5 3.30705 0.14631 3.36166 2.73626 5 - -
1738 1.38629 1.38629 1.38629 1.38629
1739 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1740 6 3.30705 0.14631 3.36166 2.73626 6 - -
1741 1.38629 1.38629 1.38629 1.38629
1742 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1743 7 1.30792 2.11152 2.18422 0.70118 7 - -
1744 1.38629 1.38629 1.38629 1.38629
1745 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1746 8 2.97980 2.52563 3.03204 0.19727 8 - -
1747 1.38629 1.38629 1.38629 1.38629
1748 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1749 9 2.86982 3.47591 0.13017 3.36931 9 - -
1750 1.38629 1.38629 1.38629 1.38629
1751 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1752 10 2.86982 3.47591 0.13017 3.36931 10 - -
1753 1.38629 1.38629 1.38629 1.38629
1754 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1755 11 2.86982 3.47591 0.13017 3.36931 11 - -
1756 1.38629 1.38629 1.38629 1.38629
1757 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1758 12 2.86982 3.47591 0.13017 3.36931 12 - -
1759 1.38629 1.38629 1.38629 1.38629
1760 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1761 13 0.15719 3.27118 2.73043 3.16274 13 - -
1762 1.38629 1.38629 1.38629 1.38629
1763 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1764 14 2.97980 2.52563 3.03204 0.19727 14 - -
1765 1.38629 1.38629 1.38629 1.38629
1766 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1767 15 0.15719 3.27118 2.73043 3.16274 15 - -
1768 1.38629 1.38629 1.38629 1.38629
1769 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1770 16 2.42752 1.34012 2.49742 0.56628 16 - -
1771 1.38629 1.38629 1.38629 1.38629
1772 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1773 17 2.97980 2.52563 3.03204 0.19727 17 - -
1774 1.38629 1.38629 1.38629 1.38629
1775 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1776 18 3.30705 0.14631 3.36166 2.73626 18 - -
1777 1.38629 1.38629 1.38629 1.38629
1778 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1779 19 2.97980 2.52563 3.03204 0.19727 19 - -
1780 1.38629 1.38629 1.38629 1.38629
1781 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1782 20 3.30705 0.14631 3.36166 2.73626 20 - -
1783 1.38629 1.38629 1.38629 1.38629
1784 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1785 21 3.30705 0.14631 3.36166 2.73626 21 - -
1786 1.38629 1.38629 1.38629 1.38629
1787 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1788 22 2.97980 2.52563 3.03204 0.19727 22 - -
1789 1.38629 1.38629 1.38629 1.38629
1790 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1791 23 2.97980 2.52563 3.03204 0.19727 23 - -
1792 1.38629 1.38629 1.38629 1.38629
1793 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1794 24 2.86982 3.47591 0.13017 3.36931 24 - -
1795 1.38629 1.38629 1.38629 1.38629
1796 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1797 25 2.86982 3.47591 0.13017 3.36931 25 - -
1798 1.38629 1.38629 1.38629 1.38629
1799 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1800 26 2.97980 2.52563 3.03204 0.19727 26 - -
1801 1.38629 1.38629 1.38629 1.38629
1802 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1803 27 0.15719 3.27118 2.73043 3.16274 27 - -
1804 1.38629 1.38629 1.38629 1.38629
1805 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1806 28 3.30705 0.14631 3.36166 2.73626 28 - -
1807 1.38629 1.38629 1.38629 1.38629
1808 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1809 29 2.86982 3.47591 0.13017 3.36931 29 - -
1810 1.38629 1.38629 1.38629 1.38629
1811 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1812 30 2.97980 2.52563 3.03204 0.19727 30 - -
1813 1.38629 1.38629 1.38629 1.38629
1814 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1815 31 3.30705 0.14631 3.36166 2.73626 31 - -
1816 1.38629 1.38629 1.38629 1.38629
1817 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1818 32 2.97980 2.52563 3.03204 0.19727 32 - -
1819 1.38629 1.38629 1.38629 1.38629
1820 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1821 33 2.86982 3.47591 0.13017 3.36931 33 - -
1822 1.38629 1.38629 1.38629 1.38629
1823 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1824 34 2.97980 2.52563 3.03204 0.19727 34 - -
1825 1.38629 1.38629 1.38629 1.38629
1826 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1827 35 2.97980 2.52563 3.03204 0.19727 35 - -
1828 1.38629 1.38629 1.38629 1.38629
1829 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1830 36 2.97980 2.52563 3.03204 0.19727 36 - -
1831 1.38629 1.38629 1.38629 1.38629
1832 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1833 37 3.30705 0.14631 3.36166 2.73626 37 - -
1834 1.38629 1.38629 1.38629 1.38629
1835 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1836 38 0.15719 3.27118 2.73043 3.16274 38 - -
1837 1.38629 1.38629 1.38629 1.38629
1838 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1839 39 2.86982 3.47591 0.13017 3.36931 39 - -
1840 1.38629 1.38629 1.38629 1.38629
1841 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1842 40 2.97980 2.52563 3.03204 0.19727 40 - -
1843 1.38629 1.38629 1.38629 1.38629
1844 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1845 41 2.86982 3.47591 0.13017 3.36931 41 - -
1846 1.38629 1.38629 1.38629 1.38629
1847 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1848 42 2.97980 2.52563 3.03204 0.19727 42 - -
1849 1.38629 1.38629 1.38629 1.38629
1850 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1851 43 3.30705 0.14631 3.36166 2.73626 43 - -
1852 1.38629 1.38629 1.38629 1.38629
1853 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1854 44 2.97980 2.52563 3.03204 0.19727 44 - -
1855 1.38629 1.38629 1.38629 1.38629
1856 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1857 45 2.97980 2.52563 3.03204 0.19727 45 - -
1858 1.38629 1.38629 1.38629 1.38629
1859 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
1860 //
1861 HMMER3/b [3.0 | March 2010]
1862 NAME 3_End_Alveolata_58S_end_fivea_long
1863 LENG 45
1864 ALPH DNA
1865 RF no
1866 CS no
1867 MAP yes
1868 DATE Wed Feb 29 22:47:57 2012
1869 NSEQ 2
1870 EFFN 2.000000
1871 CKSUM 630474797
1872 STATS LOCAL MSV -7.1031 0.72876
1873 STATS LOCAL VITERBI -8.2897 0.72876
1874 STATS LOCAL FORWARD -3.3234 0.72876
1875 HMM A C G T
1876 m->m m->i m->d i->m i->i d->m d->d
1877 COMPO 1.65817 1.49734 1.37580 1.09916
1878 1.38629 1.38629 1.38629 1.38629
1879 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
1880 1 2.53331 3.02441 0.20344 2.88069 1 - -
1881 1.38629 1.38629 1.38629 1.38629
1882 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1883 2 2.81865 0.23582 2.88868 2.35662 2 - -
1884 1.38629 1.38629 1.38629 1.38629
1885 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1886 3 0.23862 2.84929 2.43386 2.70756 3 - -
1887 1.38629 1.38629 1.38629 1.38629
1888 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1889 4 2.81865 0.23582 2.88868 2.35662 4 - -
1890 1.38629 1.38629 1.38629 1.38629
1891 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1892 5 2.57915 2.25909 2.64442 0.28946 5 - -
1893 1.38629 1.38629 1.38629 1.38629
1894 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1895 6 2.81865 0.23582 2.88868 2.35662 6 - -
1896 1.38629 1.38629 1.38629 1.38629
1897 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1898 7 2.57915 2.25909 2.64442 0.28946 7 - -
1899 1.38629 1.38629 1.38629 1.38629
1900 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1901 8 2.57915 2.25909 2.64442 0.28946 8 - -
1902 1.38629 1.38629 1.38629 1.38629
1903 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1904 9 2.53331 3.02441 0.20344 2.88069 9 - -
1905 1.38629 1.38629 1.38629 1.38629
1906 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1907 10 2.53331 3.02441 0.20344 2.88069 10 - -
1908 1.38629 1.38629 1.38629 1.38629
1909 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1910 11 2.53331 3.02441 0.20344 2.88069 11 - -
1911 1.38629 1.38629 1.38629 1.38629
1912 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1913 12 0.23862 2.84929 2.43386 2.70756 12 - -
1914 1.38629 1.38629 1.38629 1.38629
1915 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1916 13 2.81865 0.23582 2.88868 2.35662 13 - -
1917 1.38629 1.38629 1.38629 1.38629
1918 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1919 14 2.57915 2.25909 2.64442 0.28946 14 - -
1920 1.38629 1.38629 1.38629 1.38629
1921 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1922 15 2.57915 2.25909 2.64442 0.28946 15 - -
1923 1.38629 1.38629 1.38629 1.38629
1924 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1925 16 2.81865 0.23582 2.88868 2.35662 16 - -
1926 1.38629 1.38629 1.38629 1.38629
1927 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1928 17 2.81865 0.23582 2.88868 2.35662 17 - -
1929 1.38629 1.38629 1.38629 1.38629
1930 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1931 18 2.57915 2.25909 2.64442 0.28946 18 - -
1932 1.38629 1.38629 1.38629 1.38629
1933 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1934 19 2.53331 3.02441 0.20344 2.88069 19 - -
1935 1.38629 1.38629 1.38629 1.38629
1936 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1937 20 0.23862 2.84929 2.43386 2.70756 20 - -
1938 1.38629 1.38629 1.38629 1.38629
1939 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1940 21 2.53331 3.02441 0.20344 2.88069 21 - -
1941 1.38629 1.38629 1.38629 1.38629
1942 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1943 22 0.23862 2.84929 2.43386 2.70756 22 - -
1944 1.38629 1.38629 1.38629 1.38629
1945 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1946 23 2.53331 3.02441 0.20344 2.88069 23 - -
1947 1.38629 1.38629 1.38629 1.38629
1948 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1949 24 2.57915 2.25909 2.64442 0.28946 24 - -
1950 1.38629 1.38629 1.38629 1.38629
1951 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1952 25 0.23862 2.84929 2.43386 2.70756 25 - -
1953 1.38629 1.38629 1.38629 1.38629
1954 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1955 26 2.57915 2.25909 2.64442 0.28946 26 - -
1956 1.38629 1.38629 1.38629 1.38629
1957 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1958 27 2.53331 3.02441 0.20344 2.88069 27 - -
1959 1.38629 1.38629 1.38629 1.38629
1960 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1961 28 2.57915 2.25909 2.64442 0.28946 28 - -
1962 1.38629 1.38629 1.38629 1.38629
1963 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1964 29 2.57915 2.25909 2.64442 0.28946 29 - -
1965 1.38629 1.38629 1.38629 1.38629
1966 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1967 30 2.57915 2.25909 2.64442 0.28946 30 - -
1968 1.38629 1.38629 1.38629 1.38629
1969 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1970 31 2.53331 3.02441 0.20344 2.88069 31 - -
1971 1.38629 1.38629 1.38629 1.38629
1972 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1973 32 2.81865 0.23582 2.88868 2.35662 32 - -
1974 1.38629 1.38629 1.38629 1.38629
1975 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1976 33 2.57915 2.25909 2.64442 0.28946 33 - -
1977 1.38629 1.38629 1.38629 1.38629
1978 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1979 34 2.57915 2.25909 2.64442 0.28946 34 - -
1980 1.38629 1.38629 1.38629 1.38629
1981 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1982 35 2.81865 0.23582 2.88868 2.35662 35 - -
1983 1.38629 1.38629 1.38629 1.38629
1984 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1985 36 0.23862 2.84929 2.43386 2.70756 36 - -
1986 1.38629 1.38629 1.38629 1.38629
1987 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1988 37 2.53331 3.02441 0.20344 2.88069 37 - -
1989 1.38629 1.38629 1.38629 1.38629
1990 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1991 38 2.57915 2.25909 2.64442 0.28946 38 - -
1992 1.38629 1.38629 1.38629 1.38629
1993 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1994 39 2.53331 3.02441 0.20344 2.88069 39 - -
1995 1.38629 1.38629 1.38629 1.38629
1996 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1997 40 2.81865 0.23582 2.88868 2.35662 40 - -
1998 1.38629 1.38629 1.38629 1.38629
1999 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2000 41 2.57915 2.25909 2.64442 0.28946 41 - -
2001 1.38629 1.38629 1.38629 1.38629
2002 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2003 42 2.57915 2.25909 2.64442 0.28946 42 - -
2004 1.38629 1.38629 1.38629 1.38629
2005 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2006 43 0.23862 2.84929 2.43386 2.70756 43 - -
2007 1.38629 1.38629 1.38629 1.38629
2008 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2009 44 2.57915 2.25909 2.64442 0.28946 44 - -
2010 1.38629 1.38629 1.38629 1.38629
2011 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
2012 45 2.57915 2.25909 2.64442 0.28946 45 - -
2013 1.38629 1.38629 1.38629 1.38629
2014 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
2015 //
2016 HMMER3/b [3.0 | March 2010]
2017 NAME 3_End_Alveolata_58S_end_fiveb_long
2018 LENG 45
2019 ALPH DNA
2020 RF no
2021 CS no
2022 MAP yes
2023 DATE Wed Feb 29 22:48:04 2012
2024 NSEQ 9
2025 EFFN 3.361816
2026 CKSUM 2438455031
2027 STATS LOCAL MSV -8.0408 0.71932
2028 STATS LOCAL VITERBI -7.6304 0.71932
2029 STATS LOCAL FORWARD -4.1626 0.71932
2030 HMM A C G T
2031 m->m m->i m->d i->m i->i d->m d->d
2032 COMPO 1.73808 1.37131 1.38409 1.14001
2033 1.38629 1.38629 1.38629 1.38629
2034 0.03662 4.01851 4.01851 1.46634 0.26236 0.00000 *
2035 1 3.44745 0.12851 3.49630 2.83942 1 - -
2036 1.38629 1.38629 1.38629 1.38629
2037 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2038 2 0.24046 3.06994 2.16140 2.95373 2 - -
2039 1.38629 1.38629 1.38629 1.38629
2040 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2041 3 3.44745 0.12851 3.49630 2.83942 3 - -
2042 1.38629 1.38629 1.38629 1.38629
2043 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2044 4 3.10119 2.60314 3.14886 0.17666 4 - -
2045 1.38629 1.38629 1.38629 1.38629
2046 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2047 5 3.44745 0.12851 3.49630 2.83942 5 - -
2048 1.38629 1.38629 1.38629 1.38629
2049 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2050 6 3.10119 2.60314 3.14886 0.17666 6 - -
2051 1.38629 1.38629 1.38629 1.38629
2052 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2053 7 3.10119 2.60314 3.14886 0.17666 7 - -
2054 1.38629 1.38629 1.38629 1.38629
2055 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2056 8 2.95619 3.60037 0.11579 3.50635 8 - -
2057 1.38629 1.38629 1.38629 1.38629
2058 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2059 9 2.95619 3.60037 0.11579 3.50635 9 - -
2060 1.38629 1.38629 1.38629 1.38629
2061 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2062 10 2.95619 3.60037 0.11579 3.50635 10 - -
2063 1.38629 1.38629 1.38629 1.38629
2064 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2065 11 0.14026 3.39271 2.81000 3.29556 11 - -
2066 1.38629 1.38629 1.38629 1.38629
2067 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2068 12 3.44745 0.12851 3.49630 2.83942 12 - -
2069 1.38629 1.38629 1.38629 1.38629
2070 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2071 13 0.14026 3.39271 2.81000 3.29556 13 - -
2072 1.38629 1.38629 1.38629 1.38629
2073 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2074 14 3.44745 0.12851 3.49630 2.83942 14 - -
2075 1.38629 1.38629 1.38629 1.38629
2076 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2077 15 2.95619 3.60037 0.11579 3.50635 15 - -
2078 1.38629 1.38629 1.38629 1.38629
2079 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2080 16 3.44745 0.12851 3.49630 2.83942 16 - -
2081 1.38629 1.38629 1.38629 1.38629
2082 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2083 17 3.44745 0.12851 3.49630 2.83942 17 - -
2084 1.38629 1.38629 1.38629 1.38629
2085 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2086 18 3.10119 2.60314 3.14886 0.17666 18 - -
2087 1.38629 1.38629 1.38629 1.38629
2088 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2089 19 2.95619 3.60037 0.11579 3.50635 19 - -
2090 1.38629 1.38629 1.38629 1.38629
2091 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2092 20 0.14026 3.39271 2.81000 3.29556 20 - -
2093 1.38629 1.38629 1.38629 1.38629
2094 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2095 21 2.95619 3.60037 0.11579 3.50635 21 - -
2096 1.38629 1.38629 1.38629 1.38629
2097 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2098 22 0.14026 3.39271 2.81000 3.29556 22 - -
2099 1.38629 1.38629 1.38629 1.38629
2100 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2101 23 2.95619 3.60037 0.11579 3.50635 23 - -
2102 1.38629 1.38629 1.38629 1.38629
2103 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2104 24 3.10119 2.60314 3.14886 0.17666 24 - -
2105 1.38629 1.38629 1.38629 1.38629
2106 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2107 25 0.14026 3.39271 2.81000 3.29556 25 - -
2108 1.38629 1.38629 1.38629 1.38629
2109 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2110 26 3.10119 2.60314 3.14886 0.17666 26 - -
2111 1.38629 1.38629 1.38629 1.38629
2112 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2113 27 2.95619 3.60037 0.11579 3.50635 27 - -
2114 1.38629 1.38629 1.38629 1.38629
2115 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2116 28 3.10119 2.60314 3.14886 0.17666 28 - -
2117 1.38629 1.38629 1.38629 1.38629
2118 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2119 29 3.44745 0.12851 3.49630 2.83942 29 - -
2120 1.38629 1.38629 1.38629 1.38629
2121 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2122 30 3.10119 2.60314 3.14886 0.17666 30 - -
2123 1.38629 1.38629 1.38629 1.38629
2124 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2125 31 2.95619 3.60037 0.11579 3.50635 31 - -
2126 1.38629 1.38629 1.38629 1.38629
2127 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2128 32 3.44745 0.12851 3.49630 2.83942 32 - -
2129 1.38629 1.38629 1.38629 1.38629
2130 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2131 33 3.10119 2.60314 3.14886 0.17666 33 - -
2132 1.38629 1.38629 1.38629 1.38629
2133 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2134 34 3.10119 2.60314 3.14886 0.17666 34 - -
2135 1.38629 1.38629 1.38629 1.38629
2136 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2137 35 3.44745 0.12851 3.49630 2.83942 35 - -
2138 1.38629 1.38629 1.38629 1.38629
2139 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2140 36 0.14026 3.39271 2.81000 3.29556 36 - -
2141 1.38629 1.38629 1.38629 1.38629
2142 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2143 37 2.95619 3.60037 0.11579 3.50635 37 - -
2144 1.38629 1.38629 1.38629 1.38629
2145 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2146 38 3.10119 2.60314 3.14886 0.17666 38 - -
2147 1.38629 1.38629 1.38629 1.38629
2148 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2149 39 2.95619 3.60037 0.11579 3.50635 39 - -
2150 1.38629 1.38629 1.38629 1.38629
2151 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2152 40 3.44745 0.12851 3.49630 2.83942 40 - -
2153 1.38629 1.38629 1.38629 1.38629
2154 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2155 41 3.10119 2.60314 3.14886 0.17666 41 - -
2156 1.38629 1.38629 1.38629 1.38629
2157 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2158 42 3.10119 2.60314 3.14886 0.17666 42 - -
2159 1.38629 1.38629 1.38629 1.38629
2160 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2161 43 3.10119 2.60314 3.14886 0.17666 43 - -
2162 1.38629 1.38629 1.38629 1.38629
2163 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2164 44 3.10119 2.60314 3.14886 0.17666 44 - -
2165 1.38629 1.38629 1.38629 1.38629
2166 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547
2167 45 3.10119 2.60314 3.14886 0.17666 45 - -
2168 1.38629 1.38629 1.38629 1.38629
2169 0.01848 4.00037 * 1.46634 0.26236 0.00000 *
2170 //
2171 HMMER3/b [3.0 | March 2010]
2172 NAME 3_End_Alveolata_58S_end_foura_long
2173 LENG 45
2174 ALPH DNA
2175 RF no
2176 CS no
2177 MAP yes
2178 DATE Wed Feb 29 22:47:28 2012
2179 NSEQ 8
2180 EFFN 3.347656
2181 CKSUM 1565564952
2182 STATS LOCAL MSV -8.1688 0.71931
2183 STATS LOCAL VITERBI -7.7321 0.71931
2184 STATS LOCAL FORWARD -4.0847 0.71931
2185 HMM A C G T
2186 m->m m->i m->d i->m i->i d->m d->d
2187 COMPO 1.72680 1.38541 1.31835 1.18958
2188 1.38629 1.38629 1.38629 1.38629
2189 0.03672 4.01596 4.01596 1.46634 0.26236 0.00000 *
2190 1 3.44228 0.12912 3.49135 2.83567 1 - -
2191 1.38629 1.38629 1.38629 1.38629
2192 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2193 2 2.95307 3.59583 0.11628 3.50134 2 - -
2194 1.38629 1.38629 1.38629 1.38629
2195 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2196 3 2.96273 0.26402 3.02577 2.02612 3 - -
2197 1.38629 1.38629 1.38629 1.38629
2198 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2199 4 3.09665 2.60026 3.14450 0.17739 4 - -
2200 1.38629 1.38629 1.38629 1.38629
2201 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2202 5 3.44228 0.12912 3.49135 2.83567 5 - -
2203 1.38629 1.38629 1.38629 1.38629
2204 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2205 6 3.09665 2.60026 3.14450 0.17739 6 - -
2206 1.38629 1.38629 1.38629 1.38629
2207 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2208 7 3.09665 2.60026 3.14450 0.17739 7 - -
2209 1.38629 1.38629 1.38629 1.38629
2210 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2211 8 2.95307 3.59583 0.11628 3.50134 8 - -
2212 1.38629 1.38629 1.38629 1.38629
2213 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2214 9 2.95307 3.59583 0.11628 3.50134 9 - -
2215 1.38629 1.38629 1.38629 1.38629
2216 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2217 10 2.95307 3.59583 0.11628 3.50134 10 - -
2218 1.38629 1.38629 1.38629 1.38629
2219 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2220 11 0.14085 3.38823 2.80709 3.29064 11 - -
2221 1.38629 1.38629 1.38629 1.38629
2222 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2223 12 3.09665 2.60026 3.14450 0.17739 12 - -
2224 1.38629 1.38629 1.38629 1.38629
2225 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2226 13 0.14085 3.38823 2.80709 3.29064 13 - -
2227 1.38629 1.38629 1.38629 1.38629
2228 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2229 14 3.09665 2.60026 3.14450 0.17739 14 - -
2230 1.38629 1.38629 1.38629 1.38629
2231 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2232 15 2.95307 3.59583 0.11628 3.50134 15 - -
2233 1.38629 1.38629 1.38629 1.38629
2234 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2235 16 3.44228 0.12912 3.49135 2.83567 16 - -
2236 1.38629 1.38629 1.38629 1.38629
2237 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2238 17 3.44228 0.12912 3.49135 2.83567 17 - -
2239 1.38629 1.38629 1.38629 1.38629
2240 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2241 18 3.09665 2.60026 3.14450 0.17739 18 - -
2242 1.38629 1.38629 1.38629 1.38629
2243 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2244 19 2.95307 3.59583 0.11628 3.50134 19 - -
2245 1.38629 1.38629 1.38629 1.38629
2246 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2247 20 0.14085 3.38823 2.80709 3.29064 20 - -
2248 1.38629 1.38629 1.38629 1.38629
2249 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2250 21 2.95307 3.59583 0.11628 3.50134 21 - -
2251 1.38629 1.38629 1.38629 1.38629
2252 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2253 22 0.14085 3.38823 2.80709 3.29064 22 - -
2254 1.38629 1.38629 1.38629 1.38629
2255 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2256 23 2.95307 3.59583 0.11628 3.50134 23 - -
2257 1.38629 1.38629 1.38629 1.38629
2258 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2259 24 3.44228 0.12912 3.49135 2.83567 24 - -
2260 1.38629 1.38629 1.38629 1.38629
2261 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2262 25 0.14085 3.38823 2.80709 3.29064 25 - -
2263 1.38629 1.38629 1.38629 1.38629
2264 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2265 26 3.09665 2.60026 3.14450 0.17739 26 - -
2266 1.38629 1.38629 1.38629 1.38629
2267 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2268 27 2.95307 3.59583 0.11628 3.50134 27 - -
2269 1.38629 1.38629 1.38629 1.38629
2270 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2271 28 3.09665 2.60026 3.14450 0.17739 28 - -
2272 1.38629 1.38629 1.38629 1.38629
2273 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2274 29 3.44228 0.12912 3.49135 2.83567 29 - -
2275 1.38629 1.38629 1.38629 1.38629
2276 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2277 30 3.09665 2.60026 3.14450 0.17739 30 - -
2278 1.38629 1.38629 1.38629 1.38629
2279 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2280 31 2.95307 3.59583 0.11628 3.50134 31 - -
2281 1.38629 1.38629 1.38629 1.38629
2282 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2283 32 3.44228 0.12912 3.49135 2.83567 32 - -
2284 1.38629 1.38629 1.38629 1.38629
2285 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2286 33 3.09665 2.60026 3.14450 0.17739 33 - -
2287 1.38629 1.38629 1.38629 1.38629
2288 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2289 34 3.09665 2.60026 3.14450 0.17739 34 - -
2290 1.38629 1.38629 1.38629 1.38629
2291 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2292 35 3.44228 0.12912 3.49135 2.83567 35 - -
2293 1.38629 1.38629 1.38629 1.38629
2294 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2295 36 0.14085 3.38823 2.80709 3.29064 36 - -
2296 1.38629 1.38629 1.38629 1.38629
2297 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2298 37 2.95307 3.59583 0.11628 3.50134 37 - -
2299 1.38629 1.38629 1.38629 1.38629
2300 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2301 38 3.09665 2.60026 3.14450 0.17739 38 - -
2302 1.38629 1.38629 1.38629 1.38629
2303 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2304 39 2.95307 3.59583 0.11628 3.50134 39 - -
2305 1.38629 1.38629 1.38629 1.38629
2306 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2307 40 3.44228 0.12912 3.49135 2.83567 40 - -
2308 1.38629 1.38629 1.38629 1.38629
2309 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2310 41 3.09665 2.60026 3.14450 0.17739 41 - -
2311 1.38629 1.38629 1.38629 1.38629
2312 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2313 42 3.09665 2.60026 3.14450 0.17739 42 - -
2314 1.38629 1.38629 1.38629 1.38629
2315 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2316 43 3.44228 0.12912 3.49135 2.83567 43 - -
2317 1.38629 1.38629 1.38629 1.38629
2318 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2319 44 3.09665 2.60026 3.14450 0.17739 44 - -
2320 1.38629 1.38629 1.38629 1.38629
2321 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547
2322 45 0.14085 3.38823 2.80709 3.29064 45 - -
2323 1.38629 1.38629 1.38629 1.38629
2324 0.01853 3.99777 * 1.46634 0.26236 0.00000 *
2325 //
2326 HMMER3/b [3.0 | March 2010]
2327 NAME 3_End_Alveolata_58S_end_fourb_long
2328 LENG 45
2329 ALPH DNA
2330 RF no
2331 CS no
2332 MAP yes
2333 DATE Wed Feb 29 22:47:35 2012
2334 NSEQ 14
2335 EFFN 3.325684
2336 CKSUM 2052394201
2337 STATS LOCAL MSV -8.1103 0.71933
2338 STATS LOCAL VITERBI -7.7143 0.71933
2339 STATS LOCAL FORWARD -3.9821 0.71933
2340 HMM A C G T
2341 m->m m->i m->d i->m i->i d->m d->d
2342 COMPO 1.63564 1.44468 1.38366 1.14353
2343 1.38629 1.38629 1.38629 1.38629
2344 0.03687 4.01199 4.01199 1.46634 0.26236 0.00000 *
2345 1 2.94820 3.58873 0.11705 3.49350 1 - -
2346 1.38629 1.38629 1.38629 1.38629
2347 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2348 2 3.43422 0.13008 3.48363 2.82980 2 - -
2349 1.38629 1.38629 1.38629 1.38629
2350 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2351 3 0.14177 3.38122 2.80255 3.28298 3 - -
2352 1.38629 1.38629 1.38629 1.38629
2353 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2354 4 3.43422 0.13008 3.48363 2.82980 4 - -
2355 1.38629 1.38629 1.38629 1.38629
2356 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2357 5 3.08958 2.59576 3.13770 0.17852 5 - -
2358 1.38629 1.38629 1.38629 1.38629
2359 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2360 6 3.43422 0.13008 3.48363 2.82980 6 - -
2361 1.38629 1.38629 1.38629 1.38629
2362 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2363 7 3.08958 2.59576 3.13770 0.17852 7 - -
2364 1.38629 1.38629 1.38629 1.38629
2365 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2366 8 3.08958 2.59576 3.13770 0.17852 8 - -
2367 1.38629 1.38629 1.38629 1.38629
2368 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2369 9 2.94820 3.58873 0.11705 3.49350 9 - -
2370 1.38629 1.38629 1.38629 1.38629
2371 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2372 10 2.94820 3.58873 0.11705 3.49350 10 - -
2373 1.38629 1.38629 1.38629 1.38629
2374 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2375 11 2.94820 3.58873 0.11705 3.49350 11 - -
2376 1.38629 1.38629 1.38629 1.38629
2377 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2378 12 0.14177 3.38122 2.80255 3.28298 12 - -
2379 1.38629 1.38629 1.38629 1.38629
2380 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2381 13 3.08958 2.59576 3.13770 0.17852 13 - -
2382 1.38629 1.38629 1.38629 1.38629
2383 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2384 14 3.08958 2.59576 3.13770 0.17852 14 - -
2385 1.38629 1.38629 1.38629 1.38629
2386 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2387 15 3.08958 2.59576 3.13770 0.17852 15 - -
2388 1.38629 1.38629 1.38629 1.38629
2389 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2390 16 3.43422 0.13008 3.48363 2.82980 16 - -
2391 1.38629 1.38629 1.38629 1.38629
2392 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2393 17 3.43422 0.13008 3.48363 2.82980 17 - -
2394 1.38629 1.38629 1.38629 1.38629
2395 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2396 18 3.08958 2.59576 3.13770 0.17852 18 - -
2397 1.38629 1.38629 1.38629 1.38629
2398 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2399 19 2.94820 3.58873 0.11705 3.49350 19 - -
2400 1.38629 1.38629 1.38629 1.38629
2401 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2402 20 0.14177 3.38122 2.80255 3.28298 20 - -
2403 1.38629 1.38629 1.38629 1.38629
2404 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2405 21 2.94820 3.58873 0.11705 3.49350 21 - -
2406 1.38629 1.38629 1.38629 1.38629
2407 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2408 22 0.14177 3.38122 2.80255 3.28298 22 - -
2409 1.38629 1.38629 1.38629 1.38629
2410 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2411 23 2.94820 3.58873 0.11705 3.49350 23 - -
2412 1.38629 1.38629 1.38629 1.38629
2413 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2414 24 3.08958 2.59576 3.13770 0.17852 24 - -
2415 1.38629 1.38629 1.38629 1.38629
2416 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2417 25 0.14177 3.38122 2.80255 3.28298 25 - -
2418 1.38629 1.38629 1.38629 1.38629
2419 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2420 26 3.08958 2.59576 3.13770 0.17852 26 - -
2421 1.38629 1.38629 1.38629 1.38629
2422 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2423 27 2.94820 3.58873 0.11705 3.49350 27 - -
2424 1.38629 1.38629 1.38629 1.38629
2425 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2426 28 3.08958 2.59576 3.13770 0.17852 28 - -
2427 1.38629 1.38629 1.38629 1.38629
2428 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2429 29 3.43422 0.13008 3.48363 2.82980 29 - -
2430 1.38629 1.38629 1.38629 1.38629
2431 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2432 30 3.08958 2.59576 3.13770 0.17852 30 - -
2433 1.38629 1.38629 1.38629 1.38629
2434 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2435 31 2.94820 3.58873 0.11705 3.49350 31 - -
2436 1.38629 1.38629 1.38629 1.38629
2437 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2438 32 3.43422 0.13008 3.48363 2.82980 32 - -
2439 1.38629 1.38629 1.38629 1.38629
2440 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2441 33 3.08958 2.59576 3.13770 0.17852 33 - -
2442 1.38629 1.38629 1.38629 1.38629
2443 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2444 34 3.08958 2.59576 3.13770 0.17852 34 - -
2445 1.38629 1.38629 1.38629 1.38629
2446 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2447 35 3.43422 0.13008 3.48363 2.82980 35 - -
2448 1.38629 1.38629 1.38629 1.38629
2449 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2450 36 0.14177 3.38122 2.80255 3.28298 36 - -
2451 1.38629 1.38629 1.38629 1.38629
2452 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2453 37 2.94820 3.58873 0.11705 3.49350 37 - -
2454 1.38629 1.38629 1.38629 1.38629
2455 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2456 38 3.08958 2.59576 3.13770 0.17852 38 - -
2457 1.38629 1.38629 1.38629 1.38629
2458 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2459 39 2.94820 3.58873 0.11705 3.49350 39 - -
2460 1.38629 1.38629 1.38629 1.38629
2461 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2462 40 3.43422 0.13008 3.48363 2.82980 40 - -
2463 1.38629 1.38629 1.38629 1.38629
2464 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2465 41 3.08958 2.59576 3.13770 0.17852 41 - -
2466 1.38629 1.38629 1.38629 1.38629
2467 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2468 42 3.08958 2.59576 3.13770 0.17852 42 - -
2469 1.38629 1.38629 1.38629 1.38629
2470 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2471 43 0.14177 3.38122 2.80255 3.28298 43 - -
2472 1.38629 1.38629 1.38629 1.38629
2473 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2474 44 0.14177 3.38122 2.80255 3.28298 44 - -
2475 1.38629 1.38629 1.38629 1.38629
2476 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
2477 45 3.43422 0.13008 3.48363 2.82980 45 - -
2478 1.38629 1.38629 1.38629 1.38629
2479 0.01860 3.99373 * 1.46634 0.26236 0.00000 *
2480 //
2481 HMMER3/b [3.0 | March 2010]
2482 NAME 3_End_Alveolata_58S_end_fourc_long
2483 LENG 45
2484 ALPH DNA
2485 RF no
2486 CS no
2487 MAP yes
2488 DATE Wed Feb 29 22:47:41 2012
2489 NSEQ 7
2490 EFFN 3.612793
2491 CKSUM 277781406
2492 STATS LOCAL MSV -7.4130 0.71933
2493 STATS LOCAL VITERBI -7.7029 0.71933
2494 STATS LOCAL FORWARD -3.9206 0.71933
2495 HMM A C G T
2496 m->m m->i m->d i->m i->i d->m d->d
2497 COMPO 1.78948 1.40356 1.28233 1.17168
2498 1.38629 1.38629 1.38629 1.38629
2499 0.03501 4.06265 4.06265 1.46634 0.26236 0.00000 *
2500 1 3.00833 3.67681 0.10787 3.59090 1 - -
2501 1.38629 1.38629 1.38629 1.38629
2502 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2503 2 3.53482 0.11871 3.57985 2.90247 2 - -
2504 1.38629 1.38629 1.38629 1.38629
2505 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2506 3 0.13074 3.46880 2.85915 3.37898 3 - -
2507 1.38629 1.38629 1.38629 1.38629
2508 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2509 4 3.53482 0.11871 3.57985 2.90247 4 - -
2510 1.38629 1.38629 1.38629 1.38629
2511 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2512 5 2.83792 1.90216 2.89608 0.30521 5 - -
2513 1.38629 1.38629 1.38629 1.38629
2514 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2515 6 3.53482 0.11871 3.57985 2.90247 6 - -
2516 1.38629 1.38629 1.38629 1.38629
2517 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2518 7 3.17890 2.65245 3.22356 0.16478 7 - -
2519 1.38629 1.38629 1.38629 1.38629
2520 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2521 8 2.46560 0.79961 2.53748 0.95069 8 - -
2522 1.38629 1.38629 1.38629 1.38629
2523 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2524 9 3.00833 3.67681 0.10787 3.59090 9 - -
2525 1.38629 1.38629 1.38629 1.38629
2526 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2527 10 3.00833 3.67681 0.10787 3.59090 10 - -
2528 1.38629 1.38629 1.38629 1.38629
2529 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2530 11 3.00833 3.67681 0.10787 3.59090 11 - -
2531 1.38629 1.38629 1.38629 1.38629
2532 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2533 12 1.03144 2.58673 0.73117 2.44303 12 - -
2534 1.38629 1.38629 1.38629 1.38629
2535 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2536 13 3.17890 2.65245 3.22356 0.16478 13 - -
2537 1.38629 1.38629 1.38629 1.38629
2538 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2539 14 3.17890 2.65245 3.22356 0.16478 14 - -
2540 1.38629 1.38629 1.38629 1.38629
2541 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2542 15 3.17890 2.65245 3.22356 0.16478 15 - -
2543 1.38629 1.38629 1.38629 1.38629
2544 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2545 16 3.53482 0.11871 3.57985 2.90247 16 - -
2546 1.38629 1.38629 1.38629 1.38629
2547 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2548 17 3.53482 0.11871 3.57985 2.90247 17 - -
2549 1.38629 1.38629 1.38629 1.38629
2550 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2551 18 3.17890 2.65245 3.22356 0.16478 18 - -
2552 1.38629 1.38629 1.38629 1.38629
2553 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2554 19 3.00833 3.67681 0.10787 3.59090 19 - -
2555 1.38629 1.38629 1.38629 1.38629
2556 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2557 20 0.13074 3.46880 2.85915 3.37898 20 - -
2558 1.38629 1.38629 1.38629 1.38629
2559 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2560 21 3.00833 3.67681 0.10787 3.59090 21 - -
2561 1.38629 1.38629 1.38629 1.38629
2562 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2563 22 0.13074 3.46880 2.85915 3.37898 22 - -
2564 1.38629 1.38629 1.38629 1.38629
2565 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2566 23 3.00833 3.67681 0.10787 3.59090 23 - -
2567 1.38629 1.38629 1.38629 1.38629
2568 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2569 24 3.17890 2.65245 3.22356 0.16478 24 - -
2570 1.38629 1.38629 1.38629 1.38629
2571 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2572 25 0.13074 3.46880 2.85915 3.37898 25 - -
2573 1.38629 1.38629 1.38629 1.38629
2574 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2575 26 3.17890 2.65245 3.22356 0.16478 26 - -
2576 1.38629 1.38629 1.38629 1.38629
2577 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2578 27 3.00833 3.67681 0.10787 3.59090 27 - -
2579 1.38629 1.38629 1.38629 1.38629
2580 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2581 28 3.17890 2.65245 3.22356 0.16478 28 - -
2582 1.38629 1.38629 1.38629 1.38629
2583 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2584 29 3.53482 0.11871 3.57985 2.90247 29 - -
2585 1.38629 1.38629 1.38629 1.38629
2586 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2587 30 3.17890 2.65245 3.22356 0.16478 30 - -
2588 1.38629 1.38629 1.38629 1.38629
2589 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2590 31 3.00833 3.67681 0.10787 3.59090 31 - -
2591 1.38629 1.38629 1.38629 1.38629
2592 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2593 32 3.53482 0.11871 3.57985 2.90247 32 - -
2594 1.38629 1.38629 1.38629 1.38629
2595 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2596 33 3.17890 2.65245 3.22356 0.16478 33 - -
2597 1.38629 1.38629 1.38629 1.38629
2598 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2599 34 3.17890 2.65245 3.22356 0.16478 34 - -
2600 1.38629 1.38629 1.38629 1.38629
2601 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2602 35 3.53482 0.11871 3.57985 2.90247 35 - -
2603 1.38629 1.38629 1.38629 1.38629
2604 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2605 36 0.13074 3.46880 2.85915 3.37898 36 - -
2606 1.38629 1.38629 1.38629 1.38629
2607 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2608 37 3.00833 3.67681 0.10787 3.59090 37 - -
2609 1.38629 1.38629 1.38629 1.38629
2610 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2611 38 3.17890 2.65245 3.22356 0.16478 38 - -
2612 1.38629 1.38629 1.38629 1.38629
2613 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2614 39 3.00833 3.67681 0.10787 3.59090 39 - -
2615 1.38629 1.38629 1.38629 1.38629
2616 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2617 40 3.53482 0.11871 3.57985 2.90247 40 - -
2618 1.38629 1.38629 1.38629 1.38629
2619 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2620 41 3.17890 2.65245 3.22356 0.16478 41 - -
2621 1.38629 1.38629 1.38629 1.38629
2622 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2623 42 3.17890 2.65245 3.22356 0.16478 42 - -
2624 1.38629 1.38629 1.38629 1.38629
2625 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2626 43 0.13074 3.46880 2.85915 3.37898 43 - -
2627 1.38629 1.38629 1.38629 1.38629
2628 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2629 44 3.00833 3.67681 0.10787 3.59090 44 - -
2630 1.38629 1.38629 1.38629 1.38629
2631 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547
2632 45 3.53482 0.11871 3.57985 2.90247 45 - -
2633 1.38629 1.38629 1.38629 1.38629
2634 0.01766 4.04529 * 1.46634 0.26236 0.00000 *
2635 //
2636 HMMER3/b [3.0 | March 2010]
2637 NAME 3_End_Alveolata_58S_end_fourd_long
2638 LENG 45
2639 ALPH DNA
2640 RF no
2641 CS no
2642 MAP yes
2643 DATE Wed Feb 29 22:47:47 2012
2644 NSEQ 3
2645 EFFN 3.000000
2646 CKSUM 945311865
2647 STATS LOCAL MSV -8.1412 0.72023
2648 STATS LOCAL VITERBI -7.6990 0.72023
2649 STATS LOCAL FORWARD -3.8381 0.72023
2650 HMM A C G T
2651 m->m m->i m->d i->m i->i d->m d->d
2652 COMPO 1.81287 1.32079 1.20046 1.31365
2653 1.38629 1.38629 1.38629 1.38629
2654 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
2655 1 2.86982 3.47591 0.13017 3.36931 1 - -
2656 1.38629 1.38629 1.38629 1.38629
2657 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2658 2 3.30705 0.14631 3.36166 2.73626 2 - -
2659 1.38629 1.38629 1.38629 1.38629
2660 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2661 3 2.86982 3.47591 0.13017 3.36931 3 - -
2662 1.38629 1.38629 1.38629 1.38629
2663 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2664 4 3.30705 0.14631 3.36166 2.73626 4 - -
2665 1.38629 1.38629 1.38629 1.38629
2666 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2667 5 2.97980 2.52563 3.03204 0.19727 5 - -
2668 1.38629 1.38629 1.38629 1.38629
2669 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2670 6 3.30705 0.14631 3.36166 2.73626 6 - -
2671 1.38629 1.38629 1.38629 1.38629
2672 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2673 7 2.97980 2.52563 3.03204 0.19727 7 - -
2674 1.38629 1.38629 1.38629 1.38629
2675 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2676 8 3.30705 0.14631 3.36166 2.73626 8 - -
2677 1.38629 1.38629 1.38629 1.38629
2678 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2679 9 2.86982 3.47591 0.13017 3.36931 9 - -
2680 1.38629 1.38629 1.38629 1.38629
2681 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2682 10 2.86982 3.47591 0.13017 3.36931 10 - -
2683 1.38629 1.38629 1.38629 1.38629
2684 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2685 11 2.86982 3.47591 0.13017 3.36931 11 - -
2686 1.38629 1.38629 1.38629 1.38629
2687 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2688 12 0.15719 3.27118 2.73043 3.16274 12 - -
2689 1.38629 1.38629 1.38629 1.38629
2690 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2691 13 2.97980 2.52563 3.03204 0.19727 13 - -
2692 1.38629 1.38629 1.38629 1.38629
2693 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2694 14 2.97980 2.52563 3.03204 0.19727 14 - -
2695 1.38629 1.38629 1.38629 1.38629
2696 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2697 15 2.97980 2.52563 3.03204 0.19727 15 - -
2698 1.38629 1.38629 1.38629 1.38629
2699 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2700 16 3.30705 0.14631 3.36166 2.73626 16 - -
2701 1.38629 1.38629 1.38629 1.38629
2702 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2703 17 3.30705 0.14631 3.36166 2.73626 17 - -
2704 1.38629 1.38629 1.38629 1.38629
2705 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2706 18 2.97980 2.52563 3.03204 0.19727 18 - -
2707 1.38629 1.38629 1.38629 1.38629
2708 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2709 19 2.86982 3.47591 0.13017 3.36931 19 - -
2710 1.38629 1.38629 1.38629 1.38629
2711 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2712 20 0.15719 3.27118 2.73043 3.16274 20 - -
2713 1.38629 1.38629 1.38629 1.38629
2714 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2715 21 2.86982 3.47591 0.13017 3.36931 21 - -
2716 1.38629 1.38629 1.38629 1.38629
2717 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2718 22 0.15719 3.27118 2.73043 3.16274 22 - -
2719 1.38629 1.38629 1.38629 1.38629
2720 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2721 23 2.86982 3.47591 0.13017 3.36931 23 - -
2722 1.38629 1.38629 1.38629 1.38629
2723 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2724 24 3.30705 0.14631 3.36166 2.73626 24 - -
2725 1.38629 1.38629 1.38629 1.38629
2726 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2727 25 0.15719 3.27118 2.73043 3.16274 25 - -
2728 1.38629 1.38629 1.38629 1.38629
2729 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2730 26 2.86982 3.47591 0.13017 3.36931 26 - -
2731 1.38629 1.38629 1.38629 1.38629
2732 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2733 27 2.86982 3.47591 0.13017 3.36931 27 - -
2734 1.38629 1.38629 1.38629 1.38629
2735 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2736 28 2.97980 2.52563 3.03204 0.19727 28 - -
2737 1.38629 1.38629 1.38629 1.38629
2738 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2739 29 3.30705 0.14631 3.36166 2.73626 29 - -
2740 1.38629 1.38629 1.38629 1.38629
2741 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2742 30 2.97980 2.52563 3.03204 0.19727 30 - -
2743 1.38629 1.38629 1.38629 1.38629
2744 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2745 31 2.86982 3.47591 0.13017 3.36931 31 - -
2746 1.38629 1.38629 1.38629 1.38629
2747 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2748 32 3.30705 0.14631 3.36166 2.73626 32 - -
2749 1.38629 1.38629 1.38629 1.38629
2750 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2751 33 2.97980 2.52563 3.03204 0.19727 33 - -
2752 1.38629 1.38629 1.38629 1.38629
2753 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2754 34 2.97980 2.52563 3.03204 0.19727 34 - -
2755 1.38629 1.38629 1.38629 1.38629
2756 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2757 35 3.30705 0.14631 3.36166 2.73626 35 - -
2758 1.38629 1.38629 1.38629 1.38629
2759 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2760 36 0.15719 3.27118 2.73043 3.16274 36 - -
2761 1.38629 1.38629 1.38629 1.38629
2762 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2763 37 2.86982 3.47591 0.13017 3.36931 37 - -
2764 1.38629 1.38629 1.38629 1.38629
2765 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2766 38 2.97980 2.52563 3.03204 0.19727 38 - -
2767 1.38629 1.38629 1.38629 1.38629
2768 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2769 39 2.86982 3.47591 0.13017 3.36931 39 - -
2770 1.38629 1.38629 1.38629 1.38629
2771 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2772 40 3.30705 0.14631 3.36166 2.73626 40 - -
2773 1.38629 1.38629 1.38629 1.38629
2774 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2775 41 2.97980 2.52563 3.03204 0.19727 41 - -
2776 1.38629 1.38629 1.38629 1.38629
2777 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2778 42 2.97980 2.52563 3.03204 0.19727 42 - -
2779 1.38629 1.38629 1.38629 1.38629
2780 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2781 43 0.15719 3.27118 2.73043 3.16274 43 - -
2782 1.38629 1.38629 1.38629 1.38629
2783 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2784 44 2.86982 3.47591 0.13017 3.36931 44 - -
2785 1.38629 1.38629 1.38629 1.38629
2786 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2787 45 3.30705 0.14631 3.36166 2.73626 45 - -
2788 1.38629 1.38629 1.38629 1.38629
2789 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
2790 //
2791 HMMER3/b [3.0 | March 2010]
2792 NAME 3_End_Alveolata_58S_end_fourteen_long
2793 LENG 45
2794 ALPH DNA
2795 RF no
2796 CS no
2797 MAP yes
2798 DATE Wed Feb 29 22:54:14 2012
2799 NSEQ 19
2800 EFFN 3.975342
2801 CKSUM 4093622679
2802 STATS LOCAL MSV -7.2188 0.71932
2803 STATS LOCAL VITERBI -7.4754 0.71932
2804 STATS LOCAL FORWARD -4.0594 0.71932
2805 HMM A C G T
2806 m->m m->i m->d i->m i->i d->m d->d
2807 COMPO 1.44172 1.86242 1.47496 0.96917
2808 1.38629 1.38629 1.38629 1.38629
2809 0.03292 4.12315 4.12315 1.46634 0.26236 0.00000 *
2810 1 0.11939 3.56822 2.92300 3.48820 1 - -
2811 1.38629 1.38629 1.38629 1.38629
2812 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2813 2 0.11939 3.56822 2.92300 3.48820 2 - -
2814 1.38629 1.38629 1.38629 1.38629
2815 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2816 3 3.07459 3.77484 0.09858 3.69966 3 - -
2817 1.38629 1.38629 1.38629 1.38629
2818 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2819 4 3.07459 3.77484 0.09858 3.69966 4 - -
2820 1.38629 1.38629 1.38629 1.38629
2821 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2822 5 3.28256 2.71819 3.32315 0.15032 5 - -
2823 1.38629 1.38629 1.38629 1.38629
2824 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2825 6 0.11939 3.56822 2.92300 3.48820 6 - -
2826 1.38629 1.38629 1.38629 1.38629
2827 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2828 7 3.64801 0.10726 3.68789 2.98308 7 - -
2829 1.38629 1.38629 1.38629 1.38629
2830 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2831 8 3.28256 2.71819 3.32315 0.15032 8 - -
2832 1.38629 1.38629 1.38629 1.38629
2833 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2834 9 3.28256 2.71819 3.32315 0.15032 9 - -
2835 1.38629 1.38629 1.38629 1.38629
2836 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2837 10 3.64801 0.10726 3.68789 2.98308 10 - -
2838 1.38629 1.38629 1.38629 1.38629
2839 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2840 11 3.28256 2.71819 3.32315 0.15032 11 - -
2841 1.38629 1.38629 1.38629 1.38629
2842 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2843 12 0.11939 3.56822 2.92300 3.48820 12 - -
2844 1.38629 1.38629 1.38629 1.38629
2845 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2846 13 0.11939 3.56822 2.92300 3.48820 13 - -
2847 1.38629 1.38629 1.38629 1.38629
2848 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2849 14 0.11939 3.56822 2.92300 3.48820 14 - -
2850 1.38629 1.38629 1.38629 1.38629
2851 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2852 15 3.28256 2.71819 3.32315 0.15032 15 - -
2853 1.38629 1.38629 1.38629 1.38629
2854 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2855 16 3.28256 2.71819 3.32315 0.15032 16 - -
2856 1.38629 1.38629 1.38629 1.38629
2857 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2858 17 1.36120 0.63933 2.33750 2.12501 17 - -
2859 1.38629 1.38629 1.38629 1.38629
2860 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2861 18 3.28256 2.71819 3.32315 0.15032 18 - -
2862 1.38629 1.38629 1.38629 1.38629
2863 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2864 19 3.07459 3.77484 0.09858 3.69966 19 - -
2865 1.38629 1.38629 1.38629 1.38629
2866 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2867 20 3.07459 3.77484 0.09858 3.69966 20 - -
2868 1.38629 1.38629 1.38629 1.38629
2869 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2870 21 3.07459 3.77484 0.09858 3.69966 21 - -
2871 1.38629 1.38629 1.38629 1.38629
2872 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2873 22 0.11939 3.56822 2.92300 3.48820 22 - -
2874 1.38629 1.38629 1.38629 1.38629
2875 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2876 23 3.07459 3.77484 0.09858 3.69966 23 - -
2877 1.38629 1.38629 1.38629 1.38629
2878 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2879 24 3.28256 2.71819 3.32315 0.15032 24 - -
2880 1.38629 1.38629 1.38629 1.38629
2881 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2882 25 0.11939 3.56822 2.92300 3.48820 25 - -
2883 1.38629 1.38629 1.38629 1.38629
2884 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2885 26 3.28256 2.71819 3.32315 0.15032 26 - -
2886 1.38629 1.38629 1.38629 1.38629
2887 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2888 27 3.07459 3.77484 0.09858 3.69966 27 - -
2889 1.38629 1.38629 1.38629 1.38629
2890 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2891 28 3.28256 2.71819 3.32315 0.15032 28 - -
2892 1.38629 1.38629 1.38629 1.38629
2893 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2894 29 3.28256 2.71819 3.32315 0.15032 29 - -
2895 1.38629 1.38629 1.38629 1.38629
2896 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2897 30 3.28256 2.71819 3.32315 0.15032 30 - -
2898 1.38629 1.38629 1.38629 1.38629
2899 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2900 31 0.11939 3.56822 2.92300 3.48820 31 - -
2901 1.38629 1.38629 1.38629 1.38629
2902 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2903 32 2.20880 2.30847 0.72114 1.18890 32 - -
2904 1.38629 1.38629 1.38629 1.38629
2905 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2906 33 3.28256 2.71819 3.32315 0.15032 33 - -
2907 1.38629 1.38629 1.38629 1.38629
2908 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2909 34 3.28256 2.71819 3.32315 0.15032 34 - -
2910 1.38629 1.38629 1.38629 1.38629
2911 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2912 35 3.64801 0.10726 3.68789 2.98308 35 - -
2913 1.38629 1.38629 1.38629 1.38629
2914 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2915 36 0.11939 3.56822 2.92300 3.48820 36 - -
2916 1.38629 1.38629 1.38629 1.38629
2917 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2918 37 3.07459 3.77484 0.09858 3.69966 37 - -
2919 1.38629 1.38629 1.38629 1.38629
2920 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2921 38 3.28256 2.71819 3.32315 0.15032 38 - -
2922 1.38629 1.38629 1.38629 1.38629
2923 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2924 39 3.07459 3.77484 0.09858 3.69966 39 - -
2925 1.38629 1.38629 1.38629 1.38629
2926 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2927 40 3.64801 0.10726 3.68789 2.98308 40 - -
2928 1.38629 1.38629 1.38629 1.38629
2929 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2930 41 3.28256 2.71819 3.32315 0.15032 41 - -
2931 1.38629 1.38629 1.38629 1.38629
2932 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2933 42 3.28256 2.71819 3.32315 0.15032 42 - -
2934 1.38629 1.38629 1.38629 1.38629
2935 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2936 43 2.57102 2.40862 1.92099 0.37522 43 - -
2937 1.38629 1.38629 1.38629 1.38629
2938 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2939 44 3.28256 2.71819 3.32315 0.15032 44 - -
2940 1.38629 1.38629 1.38629 1.38629
2941 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547
2942 45 2.86994 0.35159 2.93552 1.67865 45 - -
2943 1.38629 1.38629 1.38629 1.38629
2944 0.01660 4.10682 * 1.46634 0.26236 0.00000 *
2945 //
2946 HMMER3/b [3.0 | March 2010]
2947 NAME 3_End_Alveolata_58S_end_nine_long
2948 LENG 45
2949 ALPH DNA
2950 RF no
2951 CS no
2952 MAP yes
2953 DATE Wed Feb 29 22:49:16 2012
2954 NSEQ 4
2955 EFFN 3.660156
2956 CKSUM 2693919103
2957 STATS LOCAL MSV -7.6646 0.71933
2958 STATS LOCAL VITERBI -7.7506 0.71933
2959 STATS LOCAL FORWARD -4.2563 0.71933
2960 HMM A C G T
2961 m->m m->i m->d i->m i->i d->m d->d
2962 COMPO 1.41247 1.34559 1.34393 1.44710
2963 1.38629 1.38629 1.38629 1.38629
2964 0.03472 4.07076 4.07076 1.46634 0.26236 0.00000 *
2965 1 3.01755 3.69041 0.10652 3.60597 1 - -
2966 1.38629 1.38629 1.38629 1.38629
2967 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
2968 2 3.19300 2.66139 3.23711 0.16273 2 - -
2969 1.38629 1.38629 1.38629 1.38629
2970 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
2971 3 0.12911 3.48247 2.86794 3.39398 3 - -
2972 1.38629 1.38629 1.38629 1.38629
2973 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
2974 4 0.12911 3.48247 2.86794 3.39398 4 - -
2975 1.38629 1.38629 1.38629 1.38629
2976 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
2977 5 3.55045 0.11705 3.59478 2.91367 5 - -
2978 1.38629 1.38629 1.38629 1.38629
2979 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
2980 6 3.19300 2.66139 3.23711 0.16273 6 - -
2981 1.38629 1.38629 1.38629 1.38629
2982 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
2983 7 0.12911 3.48247 2.86794 3.39398 7 - -
2984 1.38629 1.38629 1.38629 1.38629
2985 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
2986 8 0.12911 3.48247 2.86794 3.39398 8 - -
2987 1.38629 1.38629 1.38629 1.38629
2988 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
2989 9 3.55045 0.11705 3.59478 2.91367 9 - -
2990 1.38629 1.38629 1.38629 1.38629
2991 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
2992 10 3.01755 3.69041 0.10652 3.60597 10 - -
2993 1.38629 1.38629 1.38629 1.38629
2994 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
2995 11 3.55045 0.11705 3.59478 2.91367 11 - -
2996 1.38629 1.38629 1.38629 1.38629
2997 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
2998 12 2.46500 0.94717 2.53631 0.80297 12 - -
2999 1.38629 1.38629 1.38629 1.38629
3000 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3001 13 3.01755 3.69041 0.10652 3.60597 13 - -
3002 1.38629 1.38629 1.38629 1.38629
3003 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3004 14 3.01755 3.69041 0.10652 3.60597 14 - -
3005 1.38629 1.38629 1.38629 1.38629
3006 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3007 15 3.55045 0.11705 3.59478 2.91367 15 - -
3008 1.38629 1.38629 1.38629 1.38629
3009 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3010 16 0.12911 3.48247 2.86794 3.39398 16 - -
3011 1.38629 1.38629 1.38629 1.38629
3012 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3013 17 3.55045 0.11705 3.59478 2.91367 17 - -
3014 1.38629 1.38629 1.38629 1.38629
3015 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3016 18 0.12911 3.48247 2.86794 3.39398 18 - -
3017 1.38629 1.38629 1.38629 1.38629
3018 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3019 19 0.12911 3.48247 2.86794 3.39398 19 - -
3020 1.38629 1.38629 1.38629 1.38629
3021 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3022 20 3.55045 0.11705 3.59478 2.91367 20 - -
3023 1.38629 1.38629 1.38629 1.38629
3024 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3025 21 3.55045 0.11705 3.59478 2.91367 21 - -
3026 1.38629 1.38629 1.38629 1.38629
3027 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3028 22 0.84829 2.57052 0.89883 2.42686 22 - -
3029 1.38629 1.38629 1.38629 1.38629
3030 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3031 23 3.01755 3.69041 0.10652 3.60597 23 - -
3032 1.38629 1.38629 1.38629 1.38629
3033 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3034 24 3.55045 0.11705 3.59478 2.91367 24 - -
3035 1.38629 1.38629 1.38629 1.38629
3036 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3037 25 0.12911 3.48247 2.86794 3.39398 25 - -
3038 1.38629 1.38629 1.38629 1.38629
3039 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3040 26 3.19300 2.66139 3.23711 0.16273 26 - -
3041 1.38629 1.38629 1.38629 1.38629
3042 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3043 27 3.01755 3.69041 0.10652 3.60597 27 - -
3044 1.38629 1.38629 1.38629 1.38629
3045 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3046 28 3.19300 2.66139 3.23711 0.16273 28 - -
3047 1.38629 1.38629 1.38629 1.38629
3048 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3049 29 3.19300 2.66139 3.23711 0.16273 29 - -
3050 1.38629 1.38629 1.38629 1.38629
3051 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3052 30 3.19300 2.66139 3.23711 0.16273 30 - -
3053 1.38629 1.38629 1.38629 1.38629
3054 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3055 31 3.01755 3.69041 0.10652 3.60597 31 - -
3056 1.38629 1.38629 1.38629 1.38629
3057 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3058 32 3.01755 3.69041 0.10652 3.60597 32 - -
3059 1.38629 1.38629 1.38629 1.38629
3060 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3061 33 3.19300 2.66139 3.23711 0.16273 33 - -
3062 1.38629 1.38629 1.38629 1.38629
3063 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3064 34 3.19300 2.66139 3.23711 0.16273 34 - -
3065 1.38629 1.38629 1.38629 1.38629
3066 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3067 35 3.55045 0.11705 3.59478 2.91367 35 - -
3068 1.38629 1.38629 1.38629 1.38629
3069 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3070 36 0.12911 3.48247 2.86794 3.39398 36 - -
3071 1.38629 1.38629 1.38629 1.38629
3072 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3073 37 3.01755 3.69041 0.10652 3.60597 37 - -
3074 1.38629 1.38629 1.38629 1.38629
3075 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3076 38 3.19300 2.66139 3.23711 0.16273 38 - -
3077 1.38629 1.38629 1.38629 1.38629
3078 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3079 39 3.01755 3.69041 0.10652 3.60597 39 - -
3080 1.38629 1.38629 1.38629 1.38629
3081 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3082 40 3.19300 2.66139 3.23711 0.16273 40 - -
3083 1.38629 1.38629 1.38629 1.38629
3084 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3085 41 3.01755 3.69041 0.10652 3.60597 41 - -
3086 1.38629 1.38629 1.38629 1.38629
3087 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3088 42 3.55045 0.11705 3.59478 2.91367 42 - -
3089 1.38629 1.38629 1.38629 1.38629
3090 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3091 43 1.00233 1.43748 2.06192 1.31588 43 - -
3092 1.38629 1.38629 1.38629 1.38629
3093 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3094 44 3.55045 0.11705 3.59478 2.91367 44 - -
3095 1.38629 1.38629 1.38629 1.38629
3096 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547
3097 45 0.12911 3.48247 2.86794 3.39398 45 - -
3098 1.38629 1.38629 1.38629 1.38629
3099 0.01751 4.05355 * 1.46634 0.26236 0.00000 *
3100 //
3101 HMMER3/b [3.0 | March 2010]
3102 NAME 3_End_Alveolata_58S_end_nineteena_long
3103 LENG 45
3104 ALPH DNA
3105 RF no
3106 CS no
3107 MAP yes
3108 DATE Wed Feb 29 22:55:44 2012
3109 NSEQ 3
3110 EFFN 3.000000
3111 CKSUM 1579425985
3112 STATS LOCAL MSV -8.0867 0.72116
3113 STATS LOCAL VITERBI -7.9812 0.72116
3114 STATS LOCAL FORWARD -3.7009 0.72116
3115 HMM A C G T
3116 m->m m->i m->d i->m i->i d->m d->d
3117 COMPO 1.79232 1.40617 1.18456 1.26419
3118 1.38629 1.38629 1.38629 1.38629
3119 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
3120 1 3.30705 0.14631 3.36166 2.73626 1 - -
3121 1.38629 1.38629 1.38629 1.38629
3122 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3123 2 0.15719 3.27118 2.73043 3.16274 2 - -
3124 1.38629 1.38629 1.38629 1.38629
3125 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3126 3 0.15719 3.27118 2.73043 3.16274 3 - -
3127 1.38629 1.38629 1.38629 1.38629
3128 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3129 4 2.86982 3.47591 0.13017 3.36931 4 - -
3130 1.38629 1.38629 1.38629 1.38629
3131 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3132 5 2.97980 2.52563 3.03204 0.19727 5 - -
3133 1.38629 1.38629 1.38629 1.38629
3134 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3135 6 2.86982 3.47591 0.13017 3.36931 6 - -
3136 1.38629 1.38629 1.38629 1.38629
3137 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3138 7 2.86982 3.47591 0.13017 3.36931 7 - -
3139 1.38629 1.38629 1.38629 1.38629
3140 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3141 8 3.30705 0.14631 3.36166 2.73626 8 - -
3142 1.38629 1.38629 1.38629 1.38629
3143 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3144 9 2.86982 3.47591 0.13017 3.36931 9 - -
3145 1.38629 1.38629 1.38629 1.38629
3146 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3147 10 2.86982 3.47591 0.13017 3.36931 10 - -
3148 1.38629 1.38629 1.38629 1.38629
3149 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3150 11 3.30705 0.14631 3.36166 2.73626 11 - -
3151 1.38629 1.38629 1.38629 1.38629
3152 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3153 12 0.15719 3.27118 2.73043 3.16274 12 - -
3154 1.38629 1.38629 1.38629 1.38629
3155 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3156 13 2.86982 3.47591 0.13017 3.36931 13 - -
3157 1.38629 1.38629 1.38629 1.38629
3158 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3159 14 3.30705 0.14631 3.36166 2.73626 14 - -
3160 1.38629 1.38629 1.38629 1.38629
3161 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3162 15 2.43440 0.61908 2.50724 1.22957 15 - -
3163 1.38629 1.38629 1.38629 1.38629
3164 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3165 16 2.97980 2.52563 3.03204 0.19727 16 - -
3166 1.38629 1.38629 1.38629 1.38629
3167 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3168 17 3.30705 0.14631 3.36166 2.73626 17 - -
3169 1.38629 1.38629 1.38629 1.38629
3170 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3171 18 2.86982 3.47591 0.13017 3.36931 18 - -
3172 1.38629 1.38629 1.38629 1.38629
3173 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3174 19 2.86982 3.47591 0.13017 3.36931 19 - -
3175 1.38629 1.38629 1.38629 1.38629
3176 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3177 20 3.30705 0.14631 3.36166 2.73626 20 - -
3178 1.38629 1.38629 1.38629 1.38629
3179 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3180 21 2.97980 2.52563 3.03204 0.19727 21 - -
3181 1.38629 1.38629 1.38629 1.38629
3182 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3183 22 2.86982 3.47591 0.13017 3.36931 22 - -
3184 1.38629 1.38629 1.38629 1.38629
3185 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3186 23 2.97980 2.52563 3.03204 0.19727 23 - -
3187 1.38629 1.38629 1.38629 1.38629
3188 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3189 24 3.30705 0.14631 3.36166 2.73626 24 - -
3190 1.38629 1.38629 1.38629 1.38629
3191 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3192 25 0.15719 3.27118 2.73043 3.16274 25 - -
3193 1.38629 1.38629 1.38629 1.38629
3194 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3195 26 2.97980 2.52563 3.03204 0.19727 26 - -
3196 1.38629 1.38629 1.38629 1.38629
3197 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3198 27 2.86982 3.47591 0.13017 3.36931 27 - -
3199 1.38629 1.38629 1.38629 1.38629
3200 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3201 28 2.12334 2.11792 1.37287 0.67982 28 - -
3202 1.38629 1.38629 1.38629 1.38629
3203 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3204 29 2.97980 2.52563 3.03204 0.19727 29 - -
3205 1.38629 1.38629 1.38629 1.38629
3206 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3207 30 2.97980 2.52563 3.03204 0.19727 30 - -
3208 1.38629 1.38629 1.38629 1.38629
3209 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3210 31 2.86982 3.47591 0.13017 3.36931 31 - -
3211 1.38629 1.38629 1.38629 1.38629
3212 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3213 32 2.97980 2.52563 3.03204 0.19727 32 - -
3214 1.38629 1.38629 1.38629 1.38629
3215 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3216 33 2.97980 2.52563 3.03204 0.19727 33 - -
3217 1.38629 1.38629 1.38629 1.38629
3218 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3219 34 2.97980 2.52563 3.03204 0.19727 34 - -
3220 1.38629 1.38629 1.38629 1.38629
3221 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3222 35 3.30705 0.14631 3.36166 2.73626 35 - -
3223 1.38629 1.38629 1.38629 1.38629
3224 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3225 36 0.15719 3.27118 2.73043 3.16274 36 - -
3226 1.38629 1.38629 1.38629 1.38629
3227 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3228 37 2.86982 3.47591 0.13017 3.36931 37 - -
3229 1.38629 1.38629 1.38629 1.38629
3230 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3231 38 2.97980 2.52563 3.03204 0.19727 38 - -
3232 1.38629 1.38629 1.38629 1.38629
3233 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3234 39 2.86982 3.47591 0.13017 3.36931 39 - -
3235 1.38629 1.38629 1.38629 1.38629
3236 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3237 40 2.97980 2.52563 3.03204 0.19727 40 - -
3238 1.38629 1.38629 1.38629 1.38629
3239 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3240 41 0.15719 3.27118 2.73043 3.16274 41 - -
3241 1.38629 1.38629 1.38629 1.38629
3242 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3243 42 2.97980 2.52563 3.03204 0.19727 42 - -
3244 1.38629 1.38629 1.38629 1.38629
3245 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3246 43 3.30705 0.14631 3.36166 2.73626 43 - -
3247 1.38629 1.38629 1.38629 1.38629
3248 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3249 44 3.30705 0.14631 3.36166 2.73626 44 - -
3250 1.38629 1.38629 1.38629 1.38629
3251 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3252 45 2.86982 3.47591 0.13017 3.36931 45 - -
3253 1.38629 1.38629 1.38629 1.38629
3254 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
3255 //
3256 HMMER3/b [3.0 | March 2010]
3257 NAME 3_End_Alveolata_58S_end_nineteenb_long
3258 LENG 45
3259 ALPH DNA
3260 RF no
3261 CS no
3262 MAP yes
3263 DATE Wed Feb 29 22:55:50 2012
3264 NSEQ 3
3265 EFFN 3.000000
3266 CKSUM 2871410458
3267 STATS LOCAL MSV -8.0750 0.72053
3268 STATS LOCAL VITERBI -7.9443 0.72053
3269 STATS LOCAL FORWARD -3.7952 0.72053
3270 HMM A C G T
3271 m->m m->i m->d i->m i->i d->m d->d
3272 COMPO 1.54304 1.52189 1.31521 1.20546
3273 1.38629 1.38629 1.38629 1.38629
3274 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
3275 1 3.30705 0.14631 3.36166 2.73626 1 - -
3276 1.38629 1.38629 1.38629 1.38629
3277 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3278 2 0.15719 3.27118 2.73043 3.16274 2 - -
3279 1.38629 1.38629 1.38629 1.38629
3280 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3281 3 0.15719 3.27118 2.73043 3.16274 3 - -
3282 1.38629 1.38629 1.38629 1.38629
3283 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3284 4 2.86982 3.47591 0.13017 3.36931 4 - -
3285 1.38629 1.38629 1.38629 1.38629
3286 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3287 5 2.97980 2.52563 3.03204 0.19727 5 - -
3288 1.38629 1.38629 1.38629 1.38629
3289 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3290 6 2.86982 3.47591 0.13017 3.36931 6 - -
3291 1.38629 1.38629 1.38629 1.38629
3292 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3293 7 2.86982 3.47591 0.13017 3.36931 7 - -
3294 1.38629 1.38629 1.38629 1.38629
3295 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3296 8 3.30705 0.14631 3.36166 2.73626 8 - -
3297 1.38629 1.38629 1.38629 1.38629
3298 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3299 9 2.86982 3.47591 0.13017 3.36931 9 - -
3300 1.38629 1.38629 1.38629 1.38629
3301 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3302 10 0.15719 3.27118 2.73043 3.16274 10 - -
3303 1.38629 1.38629 1.38629 1.38629
3304 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3305 11 2.97980 2.52563 3.03204 0.19727 11 - -
3306 1.38629 1.38629 1.38629 1.38629
3307 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3308 12 0.15719 3.27118 2.73043 3.16274 12 - -
3309 1.38629 1.38629 1.38629 1.38629
3310 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3311 13 2.86982 3.47591 0.13017 3.36931 13 - -
3312 1.38629 1.38629 1.38629 1.38629
3313 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3314 14 3.30705 0.14631 3.36166 2.73626 14 - -
3315 1.38629 1.38629 1.38629 1.38629
3316 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3317 15 2.97980 2.52563 3.03204 0.19727 15 - -
3318 1.38629 1.38629 1.38629 1.38629
3319 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3320 16 0.15719 3.27118 2.73043 3.16274 16 - -
3321 1.38629 1.38629 1.38629 1.38629
3322 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3323 17 2.97980 2.52563 3.03204 0.19727 17 - -
3324 1.38629 1.38629 1.38629 1.38629
3325 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3326 18 2.86982 3.47591 0.13017 3.36931 18 - -
3327 1.38629 1.38629 1.38629 1.38629
3328 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3329 19 2.86982 3.47591 0.13017 3.36931 19 - -
3330 1.38629 1.38629 1.38629 1.38629
3331 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3332 20 3.30705 0.14631 3.36166 2.73626 20 - -
3333 1.38629 1.38629 1.38629 1.38629
3334 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3335 21 2.97980 2.52563 3.03204 0.19727 21 - -
3336 1.38629 1.38629 1.38629 1.38629
3337 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3338 22 0.15719 3.27118 2.73043 3.16274 22 - -
3339 1.38629 1.38629 1.38629 1.38629
3340 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3341 23 2.97980 2.52563 3.03204 0.19727 23 - -
3342 1.38629 1.38629 1.38629 1.38629
3343 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3344 24 3.30705 0.14631 3.36166 2.73626 24 - -
3345 1.38629 1.38629 1.38629 1.38629
3346 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3347 25 0.15719 3.27118 2.73043 3.16274 25 - -
3348 1.38629 1.38629 1.38629 1.38629
3349 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3350 26 2.97980 2.52563 3.03204 0.19727 26 - -
3351 1.38629 1.38629 1.38629 1.38629
3352 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3353 27 2.86982 3.47591 0.13017 3.36931 27 - -
3354 1.38629 1.38629 1.38629 1.38629
3355 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3356 28 2.97980 2.52563 3.03204 0.19727 28 - -
3357 1.38629 1.38629 1.38629 1.38629
3358 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3359 29 2.97980 2.52563 3.03204 0.19727 29 - -
3360 1.38629 1.38629 1.38629 1.38629
3361 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3362 30 2.97980 2.52563 3.03204 0.19727 30 - -
3363 1.38629 1.38629 1.38629 1.38629
3364 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3365 31 2.86982 3.47591 0.13017 3.36931 31 - -
3366 1.38629 1.38629 1.38629 1.38629
3367 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3368 32 3.30705 0.14631 3.36166 2.73626 32 - -
3369 1.38629 1.38629 1.38629 1.38629
3370 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3371 33 2.97980 2.52563 3.03204 0.19727 33 - -
3372 1.38629 1.38629 1.38629 1.38629
3373 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3374 34 2.97980 2.52563 3.03204 0.19727 34 - -
3375 1.38629 1.38629 1.38629 1.38629
3376 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3377 35 3.30705 0.14631 3.36166 2.73626 35 - -
3378 1.38629 1.38629 1.38629 1.38629
3379 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3380 36 0.15719 3.27118 2.73043 3.16274 36 - -
3381 1.38629 1.38629 1.38629 1.38629
3382 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3383 37 2.86982 3.47591 0.13017 3.36931 37 - -
3384 1.38629 1.38629 1.38629 1.38629
3385 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3386 38 2.97980 2.52563 3.03204 0.19727 38 - -
3387 1.38629 1.38629 1.38629 1.38629
3388 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3389 39 2.86982 3.47591 0.13017 3.36931 39 - -
3390 1.38629 1.38629 1.38629 1.38629
3391 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3392 40 2.97980 2.52563 3.03204 0.19727 40 - -
3393 1.38629 1.38629 1.38629 1.38629
3394 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3395 41 0.15719 3.27118 2.73043 3.16274 41 - -
3396 1.38629 1.38629 1.38629 1.38629
3397 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3398 42 2.97980 2.52563 3.03204 0.19727 42 - -
3399 1.38629 1.38629 1.38629 1.38629
3400 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3401 43 3.30705 0.14631 3.36166 2.73626 43 - -
3402 1.38629 1.38629 1.38629 1.38629
3403 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3404 44 3.30705 0.14631 3.36166 2.73626 44 - -
3405 1.38629 1.38629 1.38629 1.38629
3406 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3407 45 2.86982 3.47591 0.13017 3.36931 45 - -
3408 1.38629 1.38629 1.38629 1.38629
3409 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
3410 //
3411 HMMER3/b [3.0 | March 2010]
3412 NAME 3_End_Alveolata_58S_end_onea_long
3413 LENG 45
3414 ALPH DNA
3415 RF no
3416 CS no
3417 MAP yes
3418 DATE Wed Feb 29 22:42:30 2012
3419 NSEQ 2
3420 EFFN 2.000000
3421 CKSUM 634275971
3422 STATS LOCAL MSV -7.4720 0.73173
3423 STATS LOCAL VITERBI -8.2528 0.73173
3424 STATS LOCAL FORWARD -3.4391 0.73173
3425 HMM A C G T
3426 m->m m->i m->d i->m i->i d->m d->d
3427 COMPO 1.40721 1.72349 1.41702 1.09573
3428 1.38629 1.38629 1.38629 1.38629
3429 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
3430 1 2.57915 2.25909 2.64442 0.28946 1 - -
3431 1.38629 1.38629 1.38629 1.38629
3432 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3433 2 0.23862 2.84929 2.43386 2.70756 2 - -
3434 1.38629 1.38629 1.38629 1.38629
3435 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3436 3 2.81865 0.23582 2.88868 2.35662 3 - -
3437 1.38629 1.38629 1.38629 1.38629
3438 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3439 4 2.81865 0.23582 2.88868 2.35662 4 - -
3440 1.38629 1.38629 1.38629 1.38629
3441 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3442 5 2.57915 2.25909 2.64442 0.28946 5 - -
3443 1.38629 1.38629 1.38629 1.38629
3444 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3445 6 2.57915 2.25909 2.64442 0.28946 6 - -
3446 1.38629 1.38629 1.38629 1.38629
3447 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3448 7 2.57915 2.25909 2.64442 0.28946 7 - -
3449 1.38629 1.38629 1.38629 1.38629
3450 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3451 8 2.53331 3.02441 0.20344 2.88069 8 - -
3452 1.38629 1.38629 1.38629 1.38629
3453 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3454 9 2.53331 3.02441 0.20344 2.88069 9 - -
3455 1.38629 1.38629 1.38629 1.38629
3456 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3457 10 2.53331 3.02441 0.20344 2.88069 10 - -
3458 1.38629 1.38629 1.38629 1.38629
3459 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3460 11 0.23862 2.84929 2.43386 2.70756 11 - -
3461 1.38629 1.38629 1.38629 1.38629
3462 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3463 12 2.57915 2.25909 2.64442 0.28946 12 - -
3464 1.38629 1.38629 1.38629 1.38629
3465 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3466 13 0.23862 2.84929 2.43386 2.70756 13 - -
3467 1.38629 1.38629 1.38629 1.38629
3468 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3469 14 2.57915 2.25909 2.64442 0.28946 14 - -
3470 1.38629 1.38629 1.38629 1.38629
3471 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3472 15 2.57915 2.25909 2.64442 0.28946 15 - -
3473 1.38629 1.38629 1.38629 1.38629
3474 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3475 16 2.81865 0.23582 2.88868 2.35662 16 - -
3476 1.38629 1.38629 1.38629 1.38629
3477 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3478 17 2.57915 2.25909 2.64442 0.28946 17 - -
3479 1.38629 1.38629 1.38629 1.38629
3480 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3481 18 2.57915 2.25909 2.64442 0.28946 18 - -
3482 1.38629 1.38629 1.38629 1.38629
3483 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3484 19 2.53331 3.02441 0.20344 2.88069 19 - -
3485 1.38629 1.38629 1.38629 1.38629
3486 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3487 20 0.23862 2.84929 2.43386 2.70756 20 - -
3488 1.38629 1.38629 1.38629 1.38629
3489 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3490 21 0.23862 2.84929 2.43386 2.70756 21 - -
3491 1.38629 1.38629 1.38629 1.38629
3492 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3493 22 2.53331 3.02441 0.20344 2.88069 22 - -
3494 1.38629 1.38629 1.38629 1.38629
3495 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3496 23 2.53331 3.02441 0.20344 2.88069 23 - -
3497 1.38629 1.38629 1.38629 1.38629
3498 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3499 24 2.57915 2.25909 2.64442 0.28946 24 - -
3500 1.38629 1.38629 1.38629 1.38629
3501 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3502 25 1.89532 1.96405 1.06955 1.00436 25 - -
3503 1.38629 1.38629 1.38629 1.38629
3504 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3505 26 2.57915 2.25909 2.64442 0.28946 26 - -
3506 1.38629 1.38629 1.38629 1.38629
3507 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3508 27 2.53331 3.02441 0.20344 2.88069 27 - -
3509 1.38629 1.38629 1.38629 1.38629
3510 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3511 28 2.81865 0.23582 2.88868 2.35662 28 - -
3512 1.38629 1.38629 1.38629 1.38629
3513 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3514 29 2.57915 2.25909 2.64442 0.28946 29 - -
3515 1.38629 1.38629 1.38629 1.38629
3516 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3517 30 2.57915 2.25909 2.64442 0.28946 30 - -
3518 1.38629 1.38629 1.38629 1.38629
3519 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3520 31 2.53331 3.02441 0.20344 2.88069 31 - -
3521 1.38629 1.38629 1.38629 1.38629
3522 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3523 32 0.92825 2.28391 0.95698 2.13014 32 - -
3524 1.38629 1.38629 1.38629 1.38629
3525 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3526 33 2.57915 2.25909 2.64442 0.28946 33 - -
3527 1.38629 1.38629 1.38629 1.38629
3528 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3529 34 2.57915 2.25909 2.64442 0.28946 34 - -
3530 1.38629 1.38629 1.38629 1.38629
3531 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3532 35 2.15554 1.00938 2.23102 0.88601 35 - -
3533 1.38629 1.38629 1.38629 1.38629
3534 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3535 36 0.23862 2.84929 2.43386 2.70756 36 - -
3536 1.38629 1.38629 1.38629 1.38629
3537 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3538 37 0.23862 2.84929 2.43386 2.70756 37 - -
3539 1.38629 1.38629 1.38629 1.38629
3540 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3541 38 2.57915 2.25909 2.64442 0.28946 38 - -
3542 1.38629 1.38629 1.38629 1.38629
3543 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3544 39 2.53331 3.02441 0.20344 2.88069 39 - -
3545 1.38629 1.38629 1.38629 1.38629
3546 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3547 40 2.81865 0.23582 2.88868 2.35662 40 - -
3548 1.38629 1.38629 1.38629 1.38629
3549 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3550 41 0.23862 2.84929 2.43386 2.70756 41 - -
3551 1.38629 1.38629 1.38629 1.38629
3552 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3553 42 0.23862 2.84929 2.43386 2.70756 42 - -
3554 1.38629 1.38629 1.38629 1.38629
3555 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3556 43 0.23862 2.84929 2.43386 2.70756 43 - -
3557 1.38629 1.38629 1.38629 1.38629
3558 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3559 44 1.88179 1.10717 1.04597 1.79675 44 - -
3560 1.38629 1.38629 1.38629 1.38629
3561 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3562 45 2.57915 2.25909 2.64442 0.28946 45 - -
3563 1.38629 1.38629 1.38629 1.38629
3564 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
3565 //
3566 HMMER3/b [3.0 | March 2010]
3567 NAME 3_End_Alveolata_58S_end_oneb_long
3568 LENG 45
3569 ALPH DNA
3570 RF no
3571 CS no
3572 MAP yes
3573 DATE Wed Feb 29 22:42:36 2012
3574 NSEQ 2
3575 EFFN 2.000000
3576 CKSUM 470675090
3577 STATS LOCAL MSV -7.4696 0.73050
3578 STATS LOCAL VITERBI -8.4860 0.73050
3579 STATS LOCAL FORWARD -3.6496 0.73050
3580 HMM A C G T
3581 m->m m->i m->d i->m i->i d->m d->d
3582 COMPO 1.40317 1.51763 1.41931 1.22734
3583 1.38629 1.38629 1.38629 1.38629
3584 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
3585 1 2.81865 0.23582 2.88868 2.35662 1 - -
3586 1.38629 1.38629 1.38629 1.38629
3587 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3588 2 0.23862 2.84929 2.43386 2.70756 2 - -
3589 1.38629 1.38629 1.38629 1.38629
3590 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3591 3 2.81865 0.23582 2.88868 2.35662 3 - -
3592 1.38629 1.38629 1.38629 1.38629
3593 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3594 4 2.81865 0.23582 2.88868 2.35662 4 - -
3595 1.38629 1.38629 1.38629 1.38629
3596 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3597 5 2.57915 2.25909 2.64442 0.28946 5 - -
3598 1.38629 1.38629 1.38629 1.38629
3599 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3600 6 2.57915 2.25909 2.64442 0.28946 6 - -
3601 1.38629 1.38629 1.38629 1.38629
3602 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3603 7 2.15554 1.00938 2.23102 0.88601 7 - -
3604 1.38629 1.38629 1.38629 1.38629
3605 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3606 8 2.53331 3.02441 0.20344 2.88069 8 - -
3607 1.38629 1.38629 1.38629 1.38629
3608 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3609 9 2.53331 3.02441 0.20344 2.88069 9 - -
3610 1.38629 1.38629 1.38629 1.38629
3611 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3612 10 2.53331 3.02441 0.20344 2.88069 10 - -
3613 1.38629 1.38629 1.38629 1.38629
3614 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3615 11 0.23862 2.84929 2.43386 2.70756 11 - -
3616 1.38629 1.38629 1.38629 1.38629
3617 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3618 12 2.57915 2.25909 2.64442 0.28946 12 - -
3619 1.38629 1.38629 1.38629 1.38629
3620 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3621 13 0.23862 2.84929 2.43386 2.70756 13 - -
3622 1.38629 1.38629 1.38629 1.38629
3623 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3624 14 2.57915 2.25909 2.64442 0.28946 14 - -
3625 1.38629 1.38629 1.38629 1.38629
3626 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3627 15 2.53331 3.02441 0.20344 2.88069 15 - -
3628 1.38629 1.38629 1.38629 1.38629
3629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3630 16 2.81865 0.23582 2.88868 2.35662 16 - -
3631 1.38629 1.38629 1.38629 1.38629
3632 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3633 17 2.57915 2.25909 2.64442 0.28946 17 - -
3634 1.38629 1.38629 1.38629 1.38629
3635 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3636 18 2.57915 2.25909 2.64442 0.28946 18 - -
3637 1.38629 1.38629 1.38629 1.38629
3638 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3639 19 2.53331 3.02441 0.20344 2.88069 19 - -
3640 1.38629 1.38629 1.38629 1.38629
3641 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3642 20 0.23862 2.84929 2.43386 2.70756 20 - -
3643 1.38629 1.38629 1.38629 1.38629
3644 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3645 21 0.23862 2.84929 2.43386 2.70756 21 - -
3646 1.38629 1.38629 1.38629 1.38629
3647 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3648 22 2.53331 3.02441 0.20344 2.88069 22 - -
3649 1.38629 1.38629 1.38629 1.38629
3650 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3651 23 2.53331 3.02441 0.20344 2.88069 23 - -
3652 1.38629 1.38629 1.38629 1.38629
3653 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3654 24 2.57915 2.25909 2.64442 0.28946 24 - -
3655 1.38629 1.38629 1.38629 1.38629
3656 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3657 25 2.57915 2.25909 2.64442 0.28946 25 - -
3658 1.38629 1.38629 1.38629 1.38629
3659 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3660 26 2.57915 2.25909 2.64442 0.28946 26 - -
3661 1.38629 1.38629 1.38629 1.38629
3662 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3663 27 2.53331 3.02441 0.20344 2.88069 27 - -
3664 1.38629 1.38629 1.38629 1.38629
3665 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3666 28 2.81865 0.23582 2.88868 2.35662 28 - -
3667 1.38629 1.38629 1.38629 1.38629
3668 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3669 29 2.57915 2.25909 2.64442 0.28946 29 - -
3670 1.38629 1.38629 1.38629 1.38629
3671 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3672 30 2.57915 2.25909 2.64442 0.28946 30 - -
3673 1.38629 1.38629 1.38629 1.38629
3674 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3675 31 2.53331 3.02441 0.20344 2.88069 31 - -
3676 1.38629 1.38629 1.38629 1.38629
3677 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3678 32 0.23862 2.84929 2.43386 2.70756 32 - -
3679 1.38629 1.38629 1.38629 1.38629
3680 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3681 33 2.57915 2.25909 2.64442 0.28946 33 - -
3682 1.38629 1.38629 1.38629 1.38629
3683 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3684 34 2.57915 2.25909 2.64442 0.28946 34 - -
3685 1.38629 1.38629 1.38629 1.38629
3686 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3687 35 2.81865 0.23582 2.88868 2.35662 35 - -
3688 1.38629 1.38629 1.38629 1.38629
3689 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3690 36 0.23862 2.84929 2.43386 2.70756 36 - -
3691 1.38629 1.38629 1.38629 1.38629
3692 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3693 37 0.23862 2.84929 2.43386 2.70756 37 - -
3694 1.38629 1.38629 1.38629 1.38629
3695 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3696 38 2.57915 2.25909 2.64442 0.28946 38 - -
3697 1.38629 1.38629 1.38629 1.38629
3698 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3699 39 2.53331 3.02441 0.20344 2.88069 39 - -
3700 1.38629 1.38629 1.38629 1.38629
3701 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3702 40 2.81865 0.23582 2.88868 2.35662 40 - -
3703 1.38629 1.38629 1.38629 1.38629
3704 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3705 41 2.81865 0.23582 2.88868 2.35662 41 - -
3706 1.38629 1.38629 1.38629 1.38629
3707 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3708 42 0.23862 2.84929 2.43386 2.70756 42 - -
3709 1.38629 1.38629 1.38629 1.38629
3710 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3711 43 0.23862 2.84929 2.43386 2.70756 43 - -
3712 1.38629 1.38629 1.38629 1.38629
3713 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3714 44 1.03732 1.95876 1.96551 1.00928 44 - -
3715 1.38629 1.38629 1.38629 1.38629
3716 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3717 45 1.01448 1.11006 1.95471 1.79419 45 - -
3718 1.38629 1.38629 1.38629 1.38629
3719 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
3720 //
3721 HMMER3/b [3.0 | March 2010]
3722 NAME 3_End_Alveolata_58S_end_onec_long
3723 LENG 45
3724 ALPH DNA
3725 RF no
3726 CS no
3727 MAP yes
3728 DATE Wed Feb 29 22:42:41 2012
3729 NSEQ 2
3730 EFFN 2.000000
3731 CKSUM 3218648575
3732 STATS LOCAL MSV -7.4834 0.72855
3733 STATS LOCAL VITERBI -8.3698 0.72855
3734 STATS LOCAL FORWARD -3.5469 0.72855
3735 HMM A C G T
3736 m->m m->i m->d i->m i->i d->m d->d
3737 COMPO 1.45349 1.57174 1.37327 1.18652
3738 1.38629 1.38629 1.38629 1.38629
3739 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
3740 1 2.81865 0.23582 2.88868 2.35662 1 - -
3741 1.38629 1.38629 1.38629 1.38629
3742 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3743 2 0.23862 2.84929 2.43386 2.70756 2 - -
3744 1.38629 1.38629 1.38629 1.38629
3745 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3746 3 2.81865 0.23582 2.88868 2.35662 3 - -
3747 1.38629 1.38629 1.38629 1.38629
3748 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3749 4 2.81865 0.23582 2.88868 2.35662 4 - -
3750 1.38629 1.38629 1.38629 1.38629
3751 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3752 5 2.57915 2.25909 2.64442 0.28946 5 - -
3753 1.38629 1.38629 1.38629 1.38629
3754 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3755 6 2.57915 2.25909 2.64442 0.28946 6 - -
3756 1.38629 1.38629 1.38629 1.38629
3757 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3758 7 2.81865 0.23582 2.88868 2.35662 7 - -
3759 1.38629 1.38629 1.38629 1.38629
3760 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3761 8 2.53331 3.02441 0.20344 2.88069 8 - -
3762 1.38629 1.38629 1.38629 1.38629
3763 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3764 9 2.53331 3.02441 0.20344 2.88069 9 - -
3765 1.38629 1.38629 1.38629 1.38629
3766 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3767 10 2.53331 3.02441 0.20344 2.88069 10 - -
3768 1.38629 1.38629 1.38629 1.38629
3769 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3770 11 0.23862 2.84929 2.43386 2.70756 11 - -
3771 1.38629 1.38629 1.38629 1.38629
3772 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3773 12 2.57915 2.25909 2.64442 0.28946 12 - -
3774 1.38629 1.38629 1.38629 1.38629
3775 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3776 13 0.23862 2.84929 2.43386 2.70756 13 - -
3777 1.38629 1.38629 1.38629 1.38629
3778 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3779 14 2.57915 2.25909 2.64442 0.28946 14 - -
3780 1.38629 1.38629 1.38629 1.38629
3781 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3782 15 2.53331 3.02441 0.20344 2.88069 15 - -
3783 1.38629 1.38629 1.38629 1.38629
3784 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3785 16 2.81865 0.23582 2.88868 2.35662 16 - -
3786 1.38629 1.38629 1.38629 1.38629
3787 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3788 17 2.57915 2.25909 2.64442 0.28946 17 - -
3789 1.38629 1.38629 1.38629 1.38629
3790 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3791 18 2.57915 2.25909 2.64442 0.28946 18 - -
3792 1.38629 1.38629 1.38629 1.38629
3793 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3794 19 2.53331 3.02441 0.20344 2.88069 19 - -
3795 1.38629 1.38629 1.38629 1.38629
3796 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3797 20 0.23862 2.84929 2.43386 2.70756 20 - -
3798 1.38629 1.38629 1.38629 1.38629
3799 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3800 21 0.23862 2.84929 2.43386 2.70756 21 - -
3801 1.38629 1.38629 1.38629 1.38629
3802 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3803 22 2.53331 3.02441 0.20344 2.88069 22 - -
3804 1.38629 1.38629 1.38629 1.38629
3805 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3806 23 2.53331 3.02441 0.20344 2.88069 23 - -
3807 1.38629 1.38629 1.38629 1.38629
3808 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3809 24 2.57915 2.25909 2.64442 0.28946 24 - -
3810 1.38629 1.38629 1.38629 1.38629
3811 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3812 25 2.53331 3.02441 0.20344 2.88069 25 - -
3813 1.38629 1.38629 1.38629 1.38629
3814 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3815 26 2.57915 2.25909 2.64442 0.28946 26 - -
3816 1.38629 1.38629 1.38629 1.38629
3817 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3818 27 2.53331 3.02441 0.20344 2.88069 27 - -
3819 1.38629 1.38629 1.38629 1.38629
3820 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3821 28 2.81865 0.23582 2.88868 2.35662 28 - -
3822 1.38629 1.38629 1.38629 1.38629
3823 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3824 29 2.57915 2.25909 2.64442 0.28946 29 - -
3825 1.38629 1.38629 1.38629 1.38629
3826 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3827 30 2.57915 2.25909 2.64442 0.28946 30 - -
3828 1.38629 1.38629 1.38629 1.38629
3829 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3830 31 2.53331 3.02441 0.20344 2.88069 31 - -
3831 1.38629 1.38629 1.38629 1.38629
3832 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3833 32 0.23862 2.84929 2.43386 2.70756 32 - -
3834 1.38629 1.38629 1.38629 1.38629
3835 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3836 33 2.57915 2.25909 2.64442 0.28946 33 - -
3837 1.38629 1.38629 1.38629 1.38629
3838 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3839 34 2.57915 2.25909 2.64442 0.28946 34 - -
3840 1.38629 1.38629 1.38629 1.38629
3841 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3842 35 2.81865 0.23582 2.88868 2.35662 35 - -
3843 1.38629 1.38629 1.38629 1.38629
3844 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3845 36 0.23862 2.84929 2.43386 2.70756 36 - -
3846 1.38629 1.38629 1.38629 1.38629
3847 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3848 37 0.23862 2.84929 2.43386 2.70756 37 - -
3849 1.38629 1.38629 1.38629 1.38629
3850 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3851 38 2.57915 2.25909 2.64442 0.28946 38 - -
3852 1.38629 1.38629 1.38629 1.38629
3853 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3854 39 2.53331 3.02441 0.20344 2.88069 39 - -
3855 1.38629 1.38629 1.38629 1.38629
3856 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3857 40 2.57915 2.25909 2.64442 0.28946 40 - -
3858 1.38629 1.38629 1.38629 1.38629
3859 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3860 41 2.81865 0.23582 2.88868 2.35662 41 - -
3861 1.38629 1.38629 1.38629 1.38629
3862 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3863 42 0.23862 2.84929 2.43386 2.70756 42 - -
3864 1.38629 1.38629 1.38629 1.38629
3865 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3866 43 0.23862 2.84929 2.43386 2.70756 43 - -
3867 1.38629 1.38629 1.38629 1.38629
3868 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3869 44 2.57915 2.25909 2.64442 0.28946 44 - -
3870 1.38629 1.38629 1.38629 1.38629
3871 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3872 45 2.57915 2.25909 2.64442 0.28946 45 - -
3873 1.38629 1.38629 1.38629 1.38629
3874 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
3875 //
3876 HMMER3/b [3.0 | March 2010]
3877 NAME 3_End_Alveolata_58S_end_sevena_long
3878 LENG 45
3879 ALPH DNA
3880 RF no
3881 CS no
3882 MAP yes
3883 DATE Wed Feb 29 22:48:25 2012
3884 NSEQ 2
3885 EFFN 2.000000
3886 CKSUM 1500803962
3887 STATS LOCAL MSV -7.4752 0.72898
3888 STATS LOCAL VITERBI -8.3128 0.72898
3889 STATS LOCAL FORWARD -3.5618 0.72898
3890 HMM A C G T
3891 m->m m->i m->d i->m i->i d->m d->d
3892 COMPO 1.51945 1.36263 1.43442 1.24854
3893 1.38629 1.38629 1.38629 1.38629
3894 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
3895 1 2.81865 0.23582 2.88868 2.35662 1 - -
3896 1.38629 1.38629 1.38629 1.38629
3897 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3898 2 2.53331 3.02441 0.20344 2.88069 2 - -
3899 1.38629 1.38629 1.38629 1.38629
3900 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3901 3 2.81865 0.23582 2.88868 2.35662 3 - -
3902 1.38629 1.38629 1.38629 1.38629
3903 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3904 4 2.57915 2.25909 2.64442 0.28946 4 - -
3905 1.38629 1.38629 1.38629 1.38629
3906 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3907 5 2.57915 2.25909 2.64442 0.28946 5 - -
3908 1.38629 1.38629 1.38629 1.38629
3909 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3910 6 2.57915 2.25909 2.64442 0.28946 6 - -
3911 1.38629 1.38629 1.38629 1.38629
3912 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3913 7 2.81865 0.23582 2.88868 2.35662 7 - -
3914 1.38629 1.38629 1.38629 1.38629
3915 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3916 8 2.53331 3.02441 0.20344 2.88069 8 - -
3917 1.38629 1.38629 1.38629 1.38629
3918 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3919 9 2.53331 3.02441 0.20344 2.88069 9 - -
3920 1.38629 1.38629 1.38629 1.38629
3921 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3922 10 2.53331 3.02441 0.20344 2.88069 10 - -
3923 1.38629 1.38629 1.38629 1.38629
3924 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3925 11 0.23862 2.84929 2.43386 2.70756 11 - -
3926 1.38629 1.38629 1.38629 1.38629
3927 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3928 12 2.57915 2.25909 2.64442 0.28946 12 - -
3929 1.38629 1.38629 1.38629 1.38629
3930 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3931 13 0.23862 2.84929 2.43386 2.70756 13 - -
3932 1.38629 1.38629 1.38629 1.38629
3933 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3934 14 0.23862 2.84929 2.43386 2.70756 14 - -
3935 1.38629 1.38629 1.38629 1.38629
3936 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3937 15 2.53331 3.02441 0.20344 2.88069 15 - -
3938 1.38629 1.38629 1.38629 1.38629
3939 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3940 16 2.81865 0.23582 2.88868 2.35662 16 - -
3941 1.38629 1.38629 1.38629 1.38629
3942 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3943 17 2.81865 0.23582 2.88868 2.35662 17 - -
3944 1.38629 1.38629 1.38629 1.38629
3945 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3946 18 2.57915 2.25909 2.64442 0.28946 18 - -
3947 1.38629 1.38629 1.38629 1.38629
3948 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3949 19 2.53331 3.02441 0.20344 2.88069 19 - -
3950 1.38629 1.38629 1.38629 1.38629
3951 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3952 20 0.23862 2.84929 2.43386 2.70756 20 - -
3953 1.38629 1.38629 1.38629 1.38629
3954 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3955 21 0.23862 2.84929 2.43386 2.70756 21 - -
3956 1.38629 1.38629 1.38629 1.38629
3957 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3958 22 0.23862 2.84929 2.43386 2.70756 22 - -
3959 1.38629 1.38629 1.38629 1.38629
3960 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3961 23 2.53331 3.02441 0.20344 2.88069 23 - -
3962 1.38629 1.38629 1.38629 1.38629
3963 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3964 24 2.81865 0.23582 2.88868 2.35662 24 - -
3965 1.38629 1.38629 1.38629 1.38629
3966 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3967 25 2.57915 2.25909 2.64442 0.28946 25 - -
3968 1.38629 1.38629 1.38629 1.38629
3969 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3970 26 2.57915 2.25909 2.64442 0.28946 26 - -
3971 1.38629 1.38629 1.38629 1.38629
3972 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3973 27 0.23862 2.84929 2.43386 2.70756 27 - -
3974 1.38629 1.38629 1.38629 1.38629
3975 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3976 28 2.81865 0.23582 2.88868 2.35662 28 - -
3977 1.38629 1.38629 1.38629 1.38629
3978 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3979 29 2.81865 0.23582 2.88868 2.35662 29 - -
3980 1.38629 1.38629 1.38629 1.38629
3981 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3982 30 2.57915 2.25909 2.64442 0.28946 30 - -
3983 1.38629 1.38629 1.38629 1.38629
3984 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3985 31 2.53331 3.02441 0.20344 2.88069 31 - -
3986 1.38629 1.38629 1.38629 1.38629
3987 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3988 32 2.81865 0.23582 2.88868 2.35662 32 - -
3989 1.38629 1.38629 1.38629 1.38629
3990 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3991 33 2.57915 2.25909 2.64442 0.28946 33 - -
3992 1.38629 1.38629 1.38629 1.38629
3993 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3994 34 2.57915 2.25909 2.64442 0.28946 34 - -
3995 1.38629 1.38629 1.38629 1.38629
3996 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
3997 35 2.81865 0.23582 2.88868 2.35662 35 - -
3998 1.38629 1.38629 1.38629 1.38629
3999 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4000 36 0.23862 2.84929 2.43386 2.70756 36 - -
4001 1.38629 1.38629 1.38629 1.38629
4002 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4003 37 2.53331 3.02441 0.20344 2.88069 37 - -
4004 1.38629 1.38629 1.38629 1.38629
4005 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4006 38 2.15554 1.00938 2.23102 0.88601 38 - -
4007 1.38629 1.38629 1.38629 1.38629
4008 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4009 39 2.53331 3.02441 0.20344 2.88069 39 - -
4010 1.38629 1.38629 1.38629 1.38629
4011 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4012 40 2.57915 2.25909 2.64442 0.28946 40 - -
4013 1.38629 1.38629 1.38629 1.38629
4014 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4015 41 2.81865 0.23582 2.88868 2.35662 41 - -
4016 1.38629 1.38629 1.38629 1.38629
4017 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4018 42 2.57915 2.25909 2.64442 0.28946 42 - -
4019 1.38629 1.38629 1.38629 1.38629
4020 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4021 43 0.23862 2.84929 2.43386 2.70756 43 - -
4022 1.38629 1.38629 1.38629 1.38629
4023 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4024 44 2.57915 2.25909 2.64442 0.28946 44 - -
4025 1.38629 1.38629 1.38629 1.38629
4026 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4027 45 2.57915 2.25909 2.64442 0.28946 45 - -
4028 1.38629 1.38629 1.38629 1.38629
4029 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
4030 //
4031 HMMER3/b [3.0 | March 2010]
4032 NAME 3_End_Alveolata_58S_end_sevenb_long
4033 LENG 45
4034 ALPH DNA
4035 RF no
4036 CS no
4037 MAP yes
4038 DATE Wed Feb 29 22:48:32 2012
4039 NSEQ 2
4040 EFFN 2.000000
4041 CKSUM 3235530884
4042 STATS LOCAL MSV -7.4473 0.72886
4043 STATS LOCAL VITERBI -8.3269 0.72886
4044 STATS LOCAL FORWARD -3.6806 0.72886
4045 HMM A C G T
4046 m->m m->i m->d i->m i->i d->m d->d
4047 COMPO 1.51904 1.26407 1.41546 1.36351
4048 1.38629 1.38629 1.38629 1.38629
4049 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
4050 1 2.81865 0.23582 2.88868 2.35662 1 - -
4051 1.38629 1.38629 1.38629 1.38629
4052 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4053 2 2.53331 3.02441 0.20344 2.88069 2 - -
4054 1.38629 1.38629 1.38629 1.38629
4055 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4056 3 2.53331 3.02441 0.20344 2.88069 3 - -
4057 1.38629 1.38629 1.38629 1.38629
4058 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4059 4 2.57915 2.25909 2.64442 0.28946 4 - -
4060 1.38629 1.38629 1.38629 1.38629
4061 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4062 5 2.57915 2.25909 2.64442 0.28946 5 - -
4063 1.38629 1.38629 1.38629 1.38629
4064 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4065 6 2.57915 2.25909 2.64442 0.28946 6 - -
4066 1.38629 1.38629 1.38629 1.38629
4067 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4068 7 2.81865 0.23582 2.88868 2.35662 7 - -
4069 1.38629 1.38629 1.38629 1.38629
4070 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4071 8 2.53331 3.02441 0.20344 2.88069 8 - -
4072 1.38629 1.38629 1.38629 1.38629
4073 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4074 9 2.53331 3.02441 0.20344 2.88069 9 - -
4075 1.38629 1.38629 1.38629 1.38629
4076 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4077 10 2.53331 3.02441 0.20344 2.88069 10 - -
4078 1.38629 1.38629 1.38629 1.38629
4079 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4080 11 0.23862 2.84929 2.43386 2.70756 11 - -
4081 1.38629 1.38629 1.38629 1.38629
4082 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4083 12 2.57915 2.25909 2.64442 0.28946 12 - -
4084 1.38629 1.38629 1.38629 1.38629
4085 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4086 13 0.23862 2.84929 2.43386 2.70756 13 - -
4087 1.38629 1.38629 1.38629 1.38629
4088 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4089 14 2.57915 2.25909 2.64442 0.28946 14 - -
4090 1.38629 1.38629 1.38629 1.38629
4091 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4092 15 2.81865 0.23582 2.88868 2.35662 15 - -
4093 1.38629 1.38629 1.38629 1.38629
4094 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4095 16 2.81865 0.23582 2.88868 2.35662 16 - -
4096 1.38629 1.38629 1.38629 1.38629
4097 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4098 17 2.81865 0.23582 2.88868 2.35662 17 - -
4099 1.38629 1.38629 1.38629 1.38629
4100 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4101 18 2.57915 2.25909 2.64442 0.28946 18 - -
4102 1.38629 1.38629 1.38629 1.38629
4103 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4104 19 2.53331 3.02441 0.20344 2.88069 19 - -
4105 1.38629 1.38629 1.38629 1.38629
4106 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4107 20 0.23862 2.84929 2.43386 2.70756 20 - -
4108 1.38629 1.38629 1.38629 1.38629
4109 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4110 21 0.23862 2.84929 2.43386 2.70756 21 - -
4111 1.38629 1.38629 1.38629 1.38629
4112 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4113 22 0.23862 2.84929 2.43386 2.70756 22 - -
4114 1.38629 1.38629 1.38629 1.38629
4115 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4116 23 2.81865 0.23582 2.88868 2.35662 23 - -
4117 1.38629 1.38629 1.38629 1.38629
4118 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4119 24 2.81865 0.23582 2.88868 2.35662 24 - -
4120 1.38629 1.38629 1.38629 1.38629
4121 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4122 25 0.23862 2.84929 2.43386 2.70756 25 - -
4123 1.38629 1.38629 1.38629 1.38629
4124 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4125 26 2.57915 2.25909 2.64442 0.28946 26 - -
4126 1.38629 1.38629 1.38629 1.38629
4127 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4128 27 2.53331 3.02441 0.20344 2.88069 27 - -
4129 1.38629 1.38629 1.38629 1.38629
4130 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4131 28 2.81865 0.23582 2.88868 2.35662 28 - -
4132 1.38629 1.38629 1.38629 1.38629
4133 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4134 29 2.81865 0.23582 2.88868 2.35662 29 - -
4135 1.38629 1.38629 1.38629 1.38629
4136 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4137 30 2.57915 2.25909 2.64442 0.28946 30 - -
4138 1.38629 1.38629 1.38629 1.38629
4139 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4140 31 2.53331 3.02441 0.20344 2.88069 31 - -
4141 1.38629 1.38629 1.38629 1.38629
4142 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4143 32 2.81865 0.23582 2.88868 2.35662 32 - -
4144 1.38629 1.38629 1.38629 1.38629
4145 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4146 33 2.57915 2.25909 2.64442 0.28946 33 - -
4147 1.38629 1.38629 1.38629 1.38629
4148 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4149 34 2.57915 2.25909 2.64442 0.28946 34 - -
4150 1.38629 1.38629 1.38629 1.38629
4151 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4152 35 2.81865 0.23582 2.88868 2.35662 35 - -
4153 1.38629 1.38629 1.38629 1.38629
4154 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4155 36 0.23862 2.84929 2.43386 2.70756 36 - -
4156 1.38629 1.38629 1.38629 1.38629
4157 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4158 37 2.53331 3.02441 0.20344 2.88069 37 - -
4159 1.38629 1.38629 1.38629 1.38629
4160 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4161 38 2.57915 2.25909 2.64442 0.28946 38 - -
4162 1.38629 1.38629 1.38629 1.38629
4163 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4164 39 2.53331 3.02441 0.20344 2.88069 39 - -
4165 1.38629 1.38629 1.38629 1.38629
4166 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4167 40 2.57915 2.25909 2.64442 0.28946 40 - -
4168 1.38629 1.38629 1.38629 1.38629
4169 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4170 41 2.81865 0.23582 2.88868 2.35662 41 - -
4171 1.38629 1.38629 1.38629 1.38629
4172 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4173 42 1.88179 1.10717 1.04597 1.79675 42 - -
4174 1.38629 1.38629 1.38629 1.38629
4175 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4176 43 2.81865 0.23582 2.88868 2.35662 43 - -
4177 1.38629 1.38629 1.38629 1.38629
4178 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4179 44 0.23862 2.84929 2.43386 2.70756 44 - -
4180 1.38629 1.38629 1.38629 1.38629
4181 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4182 45 0.23862 2.84929 2.43386 2.70756 45 - -
4183 1.38629 1.38629 1.38629 1.38629
4184 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
4185 //
4186 HMMER3/b [3.0 | March 2010]
4187 NAME 3_End_Alveolata_58S_end_sevenc_long
4188 LENG 45
4189 ALPH DNA
4190 RF no
4191 CS no
4192 MAP yes
4193 DATE Wed Feb 29 22:48:38 2012
4194 NSEQ 2
4195 EFFN 2.000000
4196 CKSUM 677190326
4197 STATS LOCAL MSV -7.4805 0.73144
4198 STATS LOCAL VITERBI -8.3647 0.73144
4199 STATS LOCAL FORWARD -3.3920 0.73144
4200 HMM A C G T
4201 m->m m->i m->d i->m i->i d->m d->d
4202 COMPO 1.49596 1.51275 1.43591 1.14645
4203 1.38629 1.38629 1.38629 1.38629
4204 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
4205 1 2.57915 2.25909 2.64442 0.28946 1 - -
4206 1.38629 1.38629 1.38629 1.38629
4207 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4208 2 2.53331 3.02441 0.20344 2.88069 2 - -
4209 1.38629 1.38629 1.38629 1.38629
4210 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4211 3 2.57915 2.25909 2.64442 0.28946 3 - -
4212 1.38629 1.38629 1.38629 1.38629
4213 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4214 4 2.57915 2.25909 2.64442 0.28946 4 - -
4215 1.38629 1.38629 1.38629 1.38629
4216 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4217 5 2.57915 2.25909 2.64442 0.28946 5 - -
4218 1.38629 1.38629 1.38629 1.38629
4219 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4220 6 2.57915 2.25909 2.64442 0.28946 6 - -
4221 1.38629 1.38629 1.38629 1.38629
4222 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4223 7 2.57915 2.25909 2.64442 0.28946 7 - -
4224 1.38629 1.38629 1.38629 1.38629
4225 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4226 8 2.53331 3.02441 0.20344 2.88069 8 - -
4227 1.38629 1.38629 1.38629 1.38629
4228 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4229 9 2.53331 3.02441 0.20344 2.88069 9 - -
4230 1.38629 1.38629 1.38629 1.38629
4231 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4232 10 2.53331 3.02441 0.20344 2.88069 10 - -
4233 1.38629 1.38629 1.38629 1.38629
4234 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4235 11 0.23862 2.84929 2.43386 2.70756 11 - -
4236 1.38629 1.38629 1.38629 1.38629
4237 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4238 12 2.15554 1.00938 2.23102 0.88601 12 - -
4239 1.38629 1.38629 1.38629 1.38629
4240 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4241 13 1.01448 1.11006 1.95471 1.79419 13 - -
4242 1.38629 1.38629 1.38629 1.38629
4243 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4244 14 2.57915 2.25909 2.64442 0.28946 14 - -
4245 1.38629 1.38629 1.38629 1.38629
4246 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4247 15 2.57915 2.25909 2.64442 0.28946 15 - -
4248 1.38629 1.38629 1.38629 1.38629
4249 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4250 16 2.81865 0.23582 2.88868 2.35662 16 - -
4251 1.38629 1.38629 1.38629 1.38629
4252 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4253 17 2.81865 0.23582 2.88868 2.35662 17 - -
4254 1.38629 1.38629 1.38629 1.38629
4255 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4256 18 2.57915 2.25909 2.64442 0.28946 18 - -
4257 1.38629 1.38629 1.38629 1.38629
4258 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4259 19 2.53331 3.02441 0.20344 2.88069 19 - -
4260 1.38629 1.38629 1.38629 1.38629
4261 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4262 20 2.81865 0.23582 2.88868 2.35662 20 - -
4263 1.38629 1.38629 1.38629 1.38629
4264 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4265 21 0.23862 2.84929 2.43386 2.70756 21 - -
4266 1.38629 1.38629 1.38629 1.38629
4267 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4268 22 0.23862 2.84929 2.43386 2.70756 22 - -
4269 1.38629 1.38629 1.38629 1.38629
4270 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4271 23 0.92825 2.28391 0.95698 2.13014 23 - -
4272 1.38629 1.38629 1.38629 1.38629
4273 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4274 24 2.81865 0.23582 2.88868 2.35662 24 - -
4275 1.38629 1.38629 1.38629 1.38629
4276 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4277 25 0.23862 2.84929 2.43386 2.70756 25 - -
4278 1.38629 1.38629 1.38629 1.38629
4279 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4280 26 2.57915 2.25909 2.64442 0.28946 26 - -
4281 1.38629 1.38629 1.38629 1.38629
4282 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4283 27 2.53331 3.02441 0.20344 2.88069 27 - -
4284 1.38629 1.38629 1.38629 1.38629
4285 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4286 28 2.81865 0.23582 2.88868 2.35662 28 - -
4287 1.38629 1.38629 1.38629 1.38629
4288 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4289 29 2.57915 2.25909 2.64442 0.28946 29 - -
4290 1.38629 1.38629 1.38629 1.38629
4291 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4292 30 2.57915 2.25909 2.64442 0.28946 30 - -
4293 1.38629 1.38629 1.38629 1.38629
4294 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4295 31 2.53331 3.02441 0.20344 2.88069 31 - -
4296 1.38629 1.38629 1.38629 1.38629
4297 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4298 32 0.23862 2.84929 2.43386 2.70756 32 - -
4299 1.38629 1.38629 1.38629 1.38629
4300 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4301 33 0.23862 2.84929 2.43386 2.70756 33 - -
4302 1.38629 1.38629 1.38629 1.38629
4303 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4304 34 2.57915 2.25909 2.64442 0.28946 34 - -
4305 1.38629 1.38629 1.38629 1.38629
4306 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4307 35 2.81865 0.23582 2.88868 2.35662 35 - -
4308 1.38629 1.38629 1.38629 1.38629
4309 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4310 36 0.23862 2.84929 2.43386 2.70756 36 - -
4311 1.38629 1.38629 1.38629 1.38629
4312 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4313 37 2.53331 3.02441 0.20344 2.88069 37 - -
4314 1.38629 1.38629 1.38629 1.38629
4315 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4316 38 2.57915 2.25909 2.64442 0.28946 38 - -
4317 1.38629 1.38629 1.38629 1.38629
4318 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4319 39 2.53331 3.02441 0.20344 2.88069 39 - -
4320 1.38629 1.38629 1.38629 1.38629
4321 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4322 40 2.81865 0.23582 2.88868 2.35662 40 - -
4323 1.38629 1.38629 1.38629 1.38629
4324 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4325 41 2.81865 0.23582 2.88868 2.35662 41 - -
4326 1.38629 1.38629 1.38629 1.38629
4327 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4328 42 0.23862 2.84929 2.43386 2.70756 42 - -
4329 1.38629 1.38629 1.38629 1.38629
4330 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4331 43 2.57915 2.25909 2.64442 0.28946 43 - -
4332 1.38629 1.38629 1.38629 1.38629
4333 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4334 44 0.92825 2.28391 0.95698 2.13014 44 - -
4335 1.38629 1.38629 1.38629 1.38629
4336 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
4337 45 2.57915 2.25909 2.64442 0.28946 45 - -
4338 1.38629 1.38629 1.38629 1.38629
4339 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
4340 //
4341 HMMER3/b [3.0 | March 2010]
4342 NAME 3_End_Alveolata_58S_end_seventeen_long
4343 LENG 45
4344 ALPH DNA
4345 RF no
4346 CS no
4347 MAP yes
4348 DATE Wed Feb 29 22:55:31 2012
4349 NSEQ 3
4350 EFFN 3.000000
4351 CKSUM 252461474
4352 STATS LOCAL MSV -7.9979 0.72109
4353 STATS LOCAL VITERBI -7.8792 0.72109
4354 STATS LOCAL FORWARD -3.7137 0.72109
4355 HMM A C G T
4356 m->m m->i m->d i->m i->i d->m d->d
4357 COMPO 1.11444 1.67387 1.87820 1.10408
4358 1.38629 1.38629 1.38629 1.38629
4359 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
4360 1 3.30705 0.14631 3.36166 2.73626 1 - -
4361 1.38629 1.38629 1.38629 1.38629
4362 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4363 2 2.86982 3.47591 0.13017 3.36931 2 - -
4364 1.38629 1.38629 1.38629 1.38629
4365 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4366 3 3.30705 0.14631 3.36166 2.73626 3 - -
4367 1.38629 1.38629 1.38629 1.38629
4368 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4369 4 0.15719 3.27118 2.73043 3.16274 4 - -
4370 1.38629 1.38629 1.38629 1.38629
4371 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4372 5 0.15719 3.27118 2.73043 3.16274 5 - -
4373 1.38629 1.38629 1.38629 1.38629
4374 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4375 6 0.15719 3.27118 2.73043 3.16274 6 - -
4376 1.38629 1.38629 1.38629 1.38629
4377 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4378 7 2.97980 2.52563 3.03204 0.19727 7 - -
4379 1.38629 1.38629 1.38629 1.38629
4380 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4381 8 0.15719 3.27118 2.73043 3.16274 8 - -
4382 1.38629 1.38629 1.38629 1.38629
4383 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4384 9 2.86982 3.47591 0.13017 3.36931 9 - -
4385 1.38629 1.38629 1.38629 1.38629
4386 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4387 10 3.30705 0.14631 3.36166 2.73626 10 - -
4388 1.38629 1.38629 1.38629 1.38629
4389 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4390 11 0.15719 3.27118 2.73043 3.16274 11 - -
4391 1.38629 1.38629 1.38629 1.38629
4392 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4393 12 2.86982 3.47591 0.13017 3.36931 12 - -
4394 1.38629 1.38629 1.38629 1.38629
4395 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4396 13 2.97980 2.52563 3.03204 0.19727 13 - -
4397 1.38629 1.38629 1.38629 1.38629
4398 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4399 14 0.15719 3.27118 2.73043 3.16274 14 - -
4400 1.38629 1.38629 1.38629 1.38629
4401 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4402 15 0.15719 3.27118 2.73043 3.16274 15 - -
4403 1.38629 1.38629 1.38629 1.38629
4404 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4405 16 2.97980 2.52563 3.03204 0.19727 16 - -
4406 1.38629 1.38629 1.38629 1.38629
4407 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4408 17 2.97980 2.52563 3.03204 0.19727 17 - -
4409 1.38629 1.38629 1.38629 1.38629
4410 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4411 18 2.97980 2.52563 3.03204 0.19727 18 - -
4412 1.38629 1.38629 1.38629 1.38629
4413 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4414 19 0.15719 3.27118 2.73043 3.16274 19 - -
4415 1.38629 1.38629 1.38629 1.38629
4416 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4417 20 3.30705 0.14631 3.36166 2.73626 20 - -
4418 1.38629 1.38629 1.38629 1.38629
4419 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4420 21 0.15719 3.27118 2.73043 3.16274 21 - -
4421 1.38629 1.38629 1.38629 1.38629
4422 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4423 22 2.97980 2.52563 3.03204 0.19727 22 - -
4424 1.38629 1.38629 1.38629 1.38629
4425 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4426 23 2.97980 2.52563 3.03204 0.19727 23 - -
4427 1.38629 1.38629 1.38629 1.38629
4428 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4429 24 0.15719 3.27118 2.73043 3.16274 24 - -
4430 1.38629 1.38629 1.38629 1.38629
4431 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4432 25 3.30705 0.14631 3.36166 2.73626 25 - -
4433 1.38629 1.38629 1.38629 1.38629
4434 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4435 26 2.97980 2.52563 3.03204 0.19727 26 - -
4436 1.38629 1.38629 1.38629 1.38629
4437 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4438 27 0.15719 3.27118 2.73043 3.16274 27 - -
4439 1.38629 1.38629 1.38629 1.38629
4440 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4441 28 2.97980 2.52563 3.03204 0.19727 28 - -
4442 1.38629 1.38629 1.38629 1.38629
4443 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4444 29 0.15719 3.27118 2.73043 3.16274 29 - -
4445 1.38629 1.38629 1.38629 1.38629
4446 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4447 30 2.97980 2.52563 3.03204 0.19727 30 - -
4448 1.38629 1.38629 1.38629 1.38629
4449 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4450 31 2.97980 2.52563 3.03204 0.19727 31 - -
4451 1.38629 1.38629 1.38629 1.38629
4452 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4453 32 2.97980 2.52563 3.03204 0.19727 32 - -
4454 1.38629 1.38629 1.38629 1.38629
4455 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4456 33 0.15719 3.27118 2.73043 3.16274 33 - -
4457 1.38629 1.38629 1.38629 1.38629
4458 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4459 34 2.97980 2.52563 3.03204 0.19727 34 - -
4460 1.38629 1.38629 1.38629 1.38629
4461 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4462 35 0.15719 3.27118 2.73043 3.16274 35 - -
4463 1.38629 1.38629 1.38629 1.38629
4464 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4465 36 2.97980 2.52563 3.03204 0.19727 36 - -
4466 1.38629 1.38629 1.38629 1.38629
4467 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4468 37 3.30705 0.14631 3.36166 2.73626 37 - -
4469 1.38629 1.38629 1.38629 1.38629
4470 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4471 38 0.15719 3.27118 2.73043 3.16274 38 - -
4472 1.38629 1.38629 1.38629 1.38629
4473 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4474 39 2.86982 3.47591 0.13017 3.36931 39 - -
4475 1.38629 1.38629 1.38629 1.38629
4476 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4477 40 2.97980 2.52563 3.03204 0.19727 40 - -
4478 1.38629 1.38629 1.38629 1.38629
4479 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4480 41 2.86982 3.47591 0.13017 3.36931 41 - -
4481 1.38629 1.38629 1.38629 1.38629
4482 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4483 42 2.97980 2.52563 3.03204 0.19727 42 - -
4484 1.38629 1.38629 1.38629 1.38629
4485 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4486 43 3.30705 0.14631 3.36166 2.73626 43 - -
4487 1.38629 1.38629 1.38629 1.38629
4488 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4489 44 2.97980 2.52563 3.03204 0.19727 44 - -
4490 1.38629 1.38629 1.38629 1.38629
4491 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4492 45 0.15719 3.27118 2.73043 3.16274 45 - -
4493 1.38629 1.38629 1.38629 1.38629
4494 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
4495 //
4496 HMMER3/b [3.0 | March 2010]
4497 NAME 3_End_Alveolata_58S_end_six_long
4498 LENG 45
4499 ALPH DNA
4500 RF no
4501 CS no
4502 MAP yes
4503 DATE Wed Feb 29 22:48:16 2012
4504 NSEQ 6
4505 EFFN 3.565430
4506 CKSUM 1641114563
4507 STATS LOCAL MSV -7.2926 0.71932
4508 STATS LOCAL VITERBI -7.7152 0.71932
4509 STATS LOCAL FORWARD -3.9190 0.71932
4510 HMM A C G T
4511 m->m m->i m->d i->m i->i d->m d->d
4512 COMPO 1.71905 1.32555 1.24979 1.31474
4513 1.38629 1.38629 1.38629 1.38629
4514 0.03531 4.05446 4.05446 1.46634 0.26236 0.00000 *
4515 1 2.44789 0.93687 2.51948 0.81833 1 - -
4516 1.38629 1.38629 1.38629 1.38629
4517 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4518 2 0.13242 3.45492 2.85021 3.36375 2 - -
4519 1.38629 1.38629 1.38629 1.38629
4520 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4521 3 3.51892 0.12042 3.56466 2.89106 3 - -
4522 1.38629 1.38629 1.38629 1.38629
4523 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4524 4 3.16462 2.64340 3.20984 0.16690 4 - -
4525 1.38629 1.38629 1.38629 1.38629
4526 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4527 5 3.16462 2.64340 3.20984 0.16690 5 - -
4528 1.38629 1.38629 1.38629 1.38629
4529 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4530 6 3.16462 2.64340 3.20984 0.16690 6 - -
4531 1.38629 1.38629 1.38629 1.38629
4532 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4533 7 3.51892 0.12042 3.56466 2.89106 7 - -
4534 1.38629 1.38629 1.38629 1.38629
4535 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4536 8 2.99892 3.66295 0.10925 3.57556 8 - -
4537 1.38629 1.38629 1.38629 1.38629
4538 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4539 9 2.99892 3.66295 0.10925 3.57556 9 - -
4540 1.38629 1.38629 1.38629 1.38629
4541 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4542 10 2.99892 3.66295 0.10925 3.57556 10 - -
4543 1.38629 1.38629 1.38629 1.38629
4544 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4545 11 0.13242 3.45492 2.85021 3.36375 11 - -
4546 1.38629 1.38629 1.38629 1.38629
4547 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4548 12 3.16462 2.64340 3.20984 0.16690 12 - -
4549 1.38629 1.38629 1.38629 1.38629
4550 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4551 13 0.13242 3.45492 2.85021 3.36375 13 - -
4552 1.38629 1.38629 1.38629 1.38629
4553 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4554 14 2.99892 3.66295 0.10925 3.57556 14 - -
4555 1.38629 1.38629 1.38629 1.38629
4556 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4557 15 3.51892 0.12042 3.56466 2.89106 15 - -
4558 1.38629 1.38629 1.38629 1.38629
4559 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4560 16 3.51892 0.12042 3.56466 2.89106 16 - -
4561 1.38629 1.38629 1.38629 1.38629
4562 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4563 17 3.16462 2.64340 3.20984 0.16690 17 - -
4564 1.38629 1.38629 1.38629 1.38629
4565 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4566 18 3.16462 2.64340 3.20984 0.16690 18 - -
4567 1.38629 1.38629 1.38629 1.38629
4568 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4569 19 2.99892 3.66295 0.10925 3.57556 19 - -
4570 1.38629 1.38629 1.38629 1.38629
4571 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4572 20 3.51892 0.12042 3.56466 2.89106 20 - -
4573 1.38629 1.38629 1.38629 1.38629
4574 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4575 21 0.13242 3.45492 2.85021 3.36375 21 - -
4576 1.38629 1.38629 1.38629 1.38629
4577 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4578 22 0.13242 3.45492 2.85021 3.36375 22 - -
4579 1.38629 1.38629 1.38629 1.38629
4580 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4581 23 2.99892 3.66295 0.10925 3.57556 23 - -
4582 1.38629 1.38629 1.38629 1.38629
4583 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4584 24 2.54831 1.34093 2.61616 0.53256 24 - -
4585 1.38629 1.38629 1.38629 1.38629
4586 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4587 25 2.99892 3.66295 0.10925 3.57556 25 - -
4588 1.38629 1.38629 1.38629 1.38629
4589 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4590 26 3.16462 2.64340 3.20984 0.16690 26 - -
4591 1.38629 1.38629 1.38629 1.38629
4592 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4593 27 2.99892 3.66295 0.10925 3.57556 27 - -
4594 1.38629 1.38629 1.38629 1.38629
4595 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4596 28 3.51892 0.12042 3.56466 2.89106 28 - -
4597 1.38629 1.38629 1.38629 1.38629
4598 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4599 29 3.51892 0.12042 3.56466 2.89106 29 - -
4600 1.38629 1.38629 1.38629 1.38629
4601 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4602 30 3.16462 2.64340 3.20984 0.16690 30 - -
4603 1.38629 1.38629 1.38629 1.38629
4604 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4605 31 2.99892 3.66295 0.10925 3.57556 31 - -
4606 1.38629 1.38629 1.38629 1.38629
4607 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4608 32 3.51892 0.12042 3.56466 2.89106 32 - -
4609 1.38629 1.38629 1.38629 1.38629
4610 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4611 33 2.99892 3.66295 0.10925 3.57556 33 - -
4612 1.38629 1.38629 1.38629 1.38629
4613 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4614 34 3.16462 2.64340 3.20984 0.16690 34 - -
4615 1.38629 1.38629 1.38629 1.38629
4616 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4617 35 2.54831 1.34093 2.61616 0.53256 35 - -
4618 1.38629 1.38629 1.38629 1.38629
4619 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4620 36 2.99892 3.66295 0.10925 3.57556 36 - -
4621 1.38629 1.38629 1.38629 1.38629
4622 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4623 37 2.99892 3.66295 0.10925 3.57556 37 - -
4624 1.38629 1.38629 1.38629 1.38629
4625 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4626 38 3.51892 0.12042 3.56466 2.89106 38 - -
4627 1.38629 1.38629 1.38629 1.38629
4628 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4629 39 2.99892 3.66295 0.10925 3.57556 39 - -
4630 1.38629 1.38629 1.38629 1.38629
4631 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4632 40 3.16462 2.64340 3.20984 0.16690 40 - -
4633 1.38629 1.38629 1.38629 1.38629
4634 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4635 41 3.51892 0.12042 3.56466 2.89106 41 - -
4636 1.38629 1.38629 1.38629 1.38629
4637 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4638 42 3.16462 2.64340 3.20984 0.16690 42 - -
4639 1.38629 1.38629 1.38629 1.38629
4640 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4641 43 0.13242 3.45492 2.85021 3.36375 43 - -
4642 1.38629 1.38629 1.38629 1.38629
4643 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4644 44 3.51892 0.12042 3.56466 2.89106 44 - -
4645 1.38629 1.38629 1.38629 1.38629
4646 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547
4647 45 0.13242 3.45492 2.85021 3.36375 45 - -
4648 1.38629 1.38629 1.38629 1.38629
4649 0.01781 4.03697 * 1.46634 0.26236 0.00000 *
4650 //
4651 HMMER3/b [3.0 | March 2010]
4652 NAME 3_End_Alveolata_58S_end_sixteena_long
4653 LENG 45
4654 ALPH DNA
4655 RF no
4656 CS no
4657 MAP yes
4658 DATE Wed Feb 29 22:55:08 2012
4659 NSEQ 3
4660 EFFN 3.000000
4661 CKSUM 3202956986
4662 STATS LOCAL MSV -7.8599 0.72111
4663 STATS LOCAL VITERBI -7.8497 0.72111
4664 STATS LOCAL FORWARD -4.1451 0.72111
4665 HMM A C G T
4666 m->m m->i m->d i->m i->i d->m d->d
4667 COMPO 1.35816 1.44270 1.58441 1.19895
4668 1.38629 1.38629 1.38629 1.38629
4669 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
4670 1 0.15719 3.27118 2.73043 3.16274 1 - -
4671 1.38629 1.38629 1.38629 1.38629
4672 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4673 2 3.30705 0.14631 3.36166 2.73626 2 - -
4674 1.38629 1.38629 1.38629 1.38629
4675 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4676 3 0.15719 3.27118 2.73043 3.16274 3 - -
4677 1.38629 1.38629 1.38629 1.38629
4678 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4679 4 0.15719 3.27118 2.73043 3.16274 4 - -
4680 1.38629 1.38629 1.38629 1.38629
4681 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4682 5 0.15719 3.27118 2.73043 3.16274 5 - -
4683 1.38629 1.38629 1.38629 1.38629
4684 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4685 6 2.86982 3.47591 0.13017 3.36931 6 - -
4686 1.38629 1.38629 1.38629 1.38629
4687 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4688 7 2.86982 3.47591 0.13017 3.36931 7 - -
4689 1.38629 1.38629 1.38629 1.38629
4690 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4691 8 2.86982 3.47591 0.13017 3.36931 8 - -
4692 1.38629 1.38629 1.38629 1.38629
4693 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4694 9 2.86982 3.47591 0.13017 3.36931 9 - -
4695 1.38629 1.38629 1.38629 1.38629
4696 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4697 10 0.15719 3.27118 2.73043 3.16274 10 - -
4698 1.38629 1.38629 1.38629 1.38629
4699 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4700 11 2.97980 2.52563 3.03204 0.19727 11 - -
4701 1.38629 1.38629 1.38629 1.38629
4702 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4703 12 2.97980 2.52563 3.03204 0.19727 12 - -
4704 1.38629 1.38629 1.38629 1.38629
4705 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4706 13 2.97980 2.52563 3.03204 0.19727 13 - -
4707 1.38629 1.38629 1.38629 1.38629
4708 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4709 14 0.15719 3.27118 2.73043 3.16274 14 - -
4710 1.38629 1.38629 1.38629 1.38629
4711 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4712 15 2.97980 2.52563 3.03204 0.19727 15 - -
4713 1.38629 1.38629 1.38629 1.38629
4714 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4715 16 3.30705 0.14631 3.36166 2.73626 16 - -
4716 1.38629 1.38629 1.38629 1.38629
4717 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4718 17 3.30705 0.14631 3.36166 2.73626 17 - -
4719 1.38629 1.38629 1.38629 1.38629
4720 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4721 18 2.97980 2.52563 3.03204 0.19727 18 - -
4722 1.38629 1.38629 1.38629 1.38629
4723 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4724 19 3.30705 0.14631 3.36166 2.73626 19 - -
4725 1.38629 1.38629 1.38629 1.38629
4726 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4727 20 2.97980 2.52563 3.03204 0.19727 20 - -
4728 1.38629 1.38629 1.38629 1.38629
4729 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4730 21 2.97980 2.52563 3.03204 0.19727 21 - -
4731 1.38629 1.38629 1.38629 1.38629
4732 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4733 22 2.97980 2.52563 3.03204 0.19727 22 - -
4734 1.38629 1.38629 1.38629 1.38629
4735 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4736 23 2.86982 3.47591 0.13017 3.36931 23 - -
4737 1.38629 1.38629 1.38629 1.38629
4738 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4739 24 2.97980 2.52563 3.03204 0.19727 24 - -
4740 1.38629 1.38629 1.38629 1.38629
4741 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4742 25 0.15719 3.27118 2.73043 3.16274 25 - -
4743 1.38629 1.38629 1.38629 1.38629
4744 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4745 26 3.30705 0.14631 3.36166 2.73626 26 - -
4746 1.38629 1.38629 1.38629 1.38629
4747 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4748 27 0.15719 3.27118 2.73043 3.16274 27 - -
4749 1.38629 1.38629 1.38629 1.38629
4750 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4751 28 2.97980 2.52563 3.03204 0.19727 28 - -
4752 1.38629 1.38629 1.38629 1.38629
4753 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4754 29 0.15719 3.27118 2.73043 3.16274 29 - -
4755 1.38629 1.38629 1.38629 1.38629
4756 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4757 30 3.30705 0.14631 3.36166 2.73626 30 - -
4758 1.38629 1.38629 1.38629 1.38629
4759 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4760 31 0.54133 2.56226 1.37841 2.42004 31 - -
4761 1.38629 1.38629 1.38629 1.38629
4762 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4763 32 2.97980 2.52563 3.03204 0.19727 32 - -
4764 1.38629 1.38629 1.38629 1.38629
4765 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4766 33 0.15719 3.27118 2.73043 3.16274 33 - -
4767 1.38629 1.38629 1.38629 1.38629
4768 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4769 34 2.97980 2.52563 3.03204 0.19727 34 - -
4770 1.38629 1.38629 1.38629 1.38629
4771 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4772 35 3.30705 0.14631 3.36166 2.73626 35 - -
4773 1.38629 1.38629 1.38629 1.38629
4774 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4775 36 0.15719 3.27118 2.73043 3.16274 36 - -
4776 1.38629 1.38629 1.38629 1.38629
4777 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4778 37 2.86982 3.47591 0.13017 3.36931 37 - -
4779 1.38629 1.38629 1.38629 1.38629
4780 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4781 38 2.97980 2.52563 3.03204 0.19727 38 - -
4782 1.38629 1.38629 1.38629 1.38629
4783 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4784 39 2.86982 3.47591 0.13017 3.36931 39 - -
4785 1.38629 1.38629 1.38629 1.38629
4786 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4787 40 2.97980 2.52563 3.03204 0.19727 40 - -
4788 1.38629 1.38629 1.38629 1.38629
4789 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4790 41 3.30705 0.14631 3.36166 2.73626 41 - -
4791 1.38629 1.38629 1.38629 1.38629
4792 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4793 42 2.86982 3.47591 0.13017 3.36931 42 - -
4794 1.38629 1.38629 1.38629 1.38629
4795 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4796 43 3.30705 0.14631 3.36166 2.73626 43 - -
4797 1.38629 1.38629 1.38629 1.38629
4798 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4799 44 2.97980 2.52563 3.03204 0.19727 44 - -
4800 1.38629 1.38629 1.38629 1.38629
4801 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
4802 45 3.30705 0.14631 3.36166 2.73626 45 - -
4803 1.38629 1.38629 1.38629 1.38629
4804 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
4805 //
4806 HMMER3/b [3.0 | March 2010]
4807 NAME 3_End_Alveolata_58S_end_sixteenb_long
4808 LENG 45
4809 ALPH DNA
4810 RF no
4811 CS no
4812 MAP yes
4813 DATE Wed Feb 29 22:55:15 2012
4814 NSEQ 4
4815 EFFN 3.339844
4816 CKSUM 3480860732
4817 STATS LOCAL MSV -8.0392 0.71933
4818 STATS LOCAL VITERBI -7.6464 0.71933
4819 STATS LOCAL FORWARD -4.2449 0.71933
4820 HMM A C G T
4821 m->m m->i m->d i->m i->i d->m d->d
4822 COMPO 1.40398 1.37647 1.61533 1.19373
4823 1.38629 1.38629 1.38629 1.38629
4824 0.03677 4.01455 4.01455 1.46634 0.26236 0.00000 *
4825 1 0.14117 3.38574 2.80548 3.28793 1 - -
4826 1.38629 1.38629 1.38629 1.38629
4827 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4828 2 3.43942 0.12946 3.48861 2.83359 2 - -
4829 1.38629 1.38629 1.38629 1.38629
4830 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4831 3 0.14117 3.38574 2.80548 3.28793 3 - -
4832 1.38629 1.38629 1.38629 1.38629
4833 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4834 4 0.14117 3.38574 2.80548 3.28793 4 - -
4835 1.38629 1.38629 1.38629 1.38629
4836 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4837 5 0.14117 3.38574 2.80548 3.28793 5 - -
4838 1.38629 1.38629 1.38629 1.38629
4839 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4840 6 2.95135 3.59331 0.11655 3.49856 6 - -
4841 1.38629 1.38629 1.38629 1.38629
4842 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4843 7 2.95135 3.59331 0.11655 3.49856 7 - -
4844 1.38629 1.38629 1.38629 1.38629
4845 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4846 8 2.95135 3.59331 0.11655 3.49856 8 - -
4847 1.38629 1.38629 1.38629 1.38629
4848 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4849 9 2.95135 3.59331 0.11655 3.49856 9 - -
4850 1.38629 1.38629 1.38629 1.38629
4851 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4852 10 0.14117 3.38574 2.80548 3.28793 10 - -
4853 1.38629 1.38629 1.38629 1.38629
4854 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4855 11 3.09414 2.59866 3.14209 0.17779 11 - -
4856 1.38629 1.38629 1.38629 1.38629
4857 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4858 12 3.43942 0.12946 3.48861 2.83359 12 - -
4859 1.38629 1.38629 1.38629 1.38629
4860 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4861 13 3.09414 2.59866 3.14209 0.17779 13 - -
4862 1.38629 1.38629 1.38629 1.38629
4863 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4864 14 3.09414 2.59866 3.14209 0.17779 14 - -
4865 1.38629 1.38629 1.38629 1.38629
4866 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4867 15 3.09414 2.59866 3.14209 0.17779 15 - -
4868 1.38629 1.38629 1.38629 1.38629
4869 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4870 16 3.43942 0.12946 3.48861 2.83359 16 - -
4871 1.38629 1.38629 1.38629 1.38629
4872 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4873 17 3.43942 0.12946 3.48861 2.83359 17 - -
4874 1.38629 1.38629 1.38629 1.38629
4875 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4876 18 3.09414 2.59866 3.14209 0.17779 18 - -
4877 1.38629 1.38629 1.38629 1.38629
4878 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4879 19 3.43942 0.12946 3.48861 2.83359 19 - -
4880 1.38629 1.38629 1.38629 1.38629
4881 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4882 20 3.09414 2.59866 3.14209 0.17779 20 - -
4883 1.38629 1.38629 1.38629 1.38629
4884 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4885 21 3.09414 2.59866 3.14209 0.17779 21 - -
4886 1.38629 1.38629 1.38629 1.38629
4887 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4888 22 3.09414 2.59866 3.14209 0.17779 22 - -
4889 1.38629 1.38629 1.38629 1.38629
4890 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4891 23 2.95135 3.59331 0.11655 3.49856 23 - -
4892 1.38629 1.38629 1.38629 1.38629
4893 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4894 24 3.09414 2.59866 3.14209 0.17779 24 - -
4895 1.38629 1.38629 1.38629 1.38629
4896 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4897 25 0.14117 3.38574 2.80548 3.28793 25 - -
4898 1.38629 1.38629 1.38629 1.38629
4899 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4900 26 3.43942 0.12946 3.48861 2.83359 26 - -
4901 1.38629 1.38629 1.38629 1.38629
4902 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4903 27 0.14117 3.38574 2.80548 3.28793 27 - -
4904 1.38629 1.38629 1.38629 1.38629
4905 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4906 28 3.09414 2.59866 3.14209 0.17779 28 - -
4907 1.38629 1.38629 1.38629 1.38629
4908 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4909 29 0.14117 3.38574 2.80548 3.28793 29 - -
4910 1.38629 1.38629 1.38629 1.38629
4911 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4912 30 3.43942 0.12946 3.48861 2.83359 30 - -
4913 1.38629 1.38629 1.38629 1.38629
4914 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4915 31 0.14117 3.38574 2.80548 3.28793 31 - -
4916 1.38629 1.38629 1.38629 1.38629
4917 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4918 32 3.09414 2.59866 3.14209 0.17779 32 - -
4919 1.38629 1.38629 1.38629 1.38629
4920 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4921 33 0.14117 3.38574 2.80548 3.28793 33 - -
4922 1.38629 1.38629 1.38629 1.38629
4923 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4924 34 3.09414 2.59866 3.14209 0.17779 34 - -
4925 1.38629 1.38629 1.38629 1.38629
4926 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4927 35 3.43942 0.12946 3.48861 2.83359 35 - -
4928 1.38629 1.38629 1.38629 1.38629
4929 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4930 36 0.14117 3.38574 2.80548 3.28793 36 - -
4931 1.38629 1.38629 1.38629 1.38629
4932 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4933 37 2.95135 3.59331 0.11655 3.49856 37 - -
4934 1.38629 1.38629 1.38629 1.38629
4935 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4936 38 3.09414 2.59866 3.14209 0.17779 38 - -
4937 1.38629 1.38629 1.38629 1.38629
4938 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4939 39 2.95135 3.59331 0.11655 3.49856 39 - -
4940 1.38629 1.38629 1.38629 1.38629
4941 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4942 40 3.09414 2.59866 3.14209 0.17779 40 - -
4943 1.38629 1.38629 1.38629 1.38629
4944 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4945 41 3.43942 0.12946 3.48861 2.83359 41 - -
4946 1.38629 1.38629 1.38629 1.38629
4947 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4948 42 2.95135 3.59331 0.11655 3.49856 42 - -
4949 1.38629 1.38629 1.38629 1.38629
4950 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4951 43 3.43942 0.12946 3.48861 2.83359 43 - -
4952 1.38629 1.38629 1.38629 1.38629
4953 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4954 44 3.09414 2.59866 3.14209 0.17779 44 - -
4955 1.38629 1.38629 1.38629 1.38629
4956 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547
4957 45 3.43942 0.12946 3.48861 2.83359 45 - -
4958 1.38629 1.38629 1.38629 1.38629
4959 0.01855 3.99634 * 1.46634 0.26236 0.00000 *
4960 //
4961 HMMER3/b [3.0 | March 2010]
4962 NAME 3_End_Alveolata_58S_end_thirteena_long
4963 LENG 45
4964 ALPH DNA
4965 RF no
4966 CS no
4967 MAP yes
4968 DATE Wed Feb 29 22:53:44 2012
4969 NSEQ 9
4970 EFFN 3.335449
4971 CKSUM 139984797
4972 STATS LOCAL MSV -8.1484 0.71932
4973 STATS LOCAL VITERBI -7.6823 0.71932
4974 STATS LOCAL FORWARD -3.7855 0.71932
4975 HMM A C G T
4976 m->m m->i m->d i->m i->i d->m d->d
4977 COMPO 1.48084 1.04177 1.71496 1.42815
4978 1.38629 1.38629 1.38629 1.38629
4979 0.03680 4.01376 4.01376 1.46634 0.26236 0.00000 *
4980 1 0.14136 3.38434 2.80457 3.28639 1 - -
4981 1.38629 1.38629 1.38629 1.38629
4982 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
4983 2 3.43781 0.12965 3.48707 2.83242 2 - -
4984 1.38629 1.38629 1.38629 1.38629
4985 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
4986 3 0.14136 3.38434 2.80457 3.28639 3 - -
4987 1.38629 1.38629 1.38629 1.38629
4988 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
4989 4 3.43781 0.12965 3.48707 2.83242 4 - -
4990 1.38629 1.38629 1.38629 1.38629
4991 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
4992 5 0.14136 3.38434 2.80457 3.28639 5 - -
4993 1.38629 1.38629 1.38629 1.38629
4994 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
4995 6 3.43781 0.12965 3.48707 2.83242 6 - -
4996 1.38629 1.38629 1.38629 1.38629
4997 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
4998 7 3.43781 0.12965 3.48707 2.83242 7 - -
4999 1.38629 1.38629 1.38629 1.38629
5000 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5001 8 0.14136 3.38434 2.80457 3.28639 8 - -
5002 1.38629 1.38629 1.38629 1.38629
5003 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5004 9 3.43781 0.12965 3.48707 2.83242 9 - -
5005 1.38629 1.38629 1.38629 1.38629
5006 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5007 10 3.43781 0.12965 3.48707 2.83242 10 - -
5008 1.38629 1.38629 1.38629 1.38629
5009 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5010 11 3.09273 2.59776 3.14073 0.17801 11 - -
5011 1.38629 1.38629 1.38629 1.38629
5012 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5013 12 3.43781 0.12965 3.48707 2.83242 12 - -
5014 1.38629 1.38629 1.38629 1.38629
5015 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5016 13 3.09273 2.59776 3.14073 0.17801 13 - -
5017 1.38629 1.38629 1.38629 1.38629
5018 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5019 14 2.95037 3.59189 0.11671 3.49699 14 - -
5020 1.38629 1.38629 1.38629 1.38629
5021 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5022 15 3.43781 0.12965 3.48707 2.83242 15 - -
5023 1.38629 1.38629 1.38629 1.38629
5024 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5025 16 3.09273 2.59776 3.14073 0.17801 16 - -
5026 1.38629 1.38629 1.38629 1.38629
5027 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5028 17 3.09273 2.59776 3.14073 0.17801 17 - -
5029 1.38629 1.38629 1.38629 1.38629
5030 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5031 18 2.95037 3.59189 0.11671 3.49699 18 - -
5032 1.38629 1.38629 1.38629 1.38629
5033 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5034 19 3.43781 0.12965 3.48707 2.83242 19 - -
5035 1.38629 1.38629 1.38629 1.38629
5036 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5037 20 0.14136 3.38434 2.80457 3.28639 20 - -
5038 1.38629 1.38629 1.38629 1.38629
5039 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5040 21 3.00628 0.24684 3.06821 2.09759 21 - -
5041 1.38629 1.38629 1.38629 1.38629
5042 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5043 22 2.95037 3.59189 0.11671 3.49699 22 - -
5044 1.38629 1.38629 1.38629 1.38629
5045 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5046 23 3.09273 2.59776 3.14073 0.17801 23 - -
5047 1.38629 1.38629 1.38629 1.38629
5048 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5049 24 2.95037 3.59189 0.11671 3.49699 24 - -
5050 1.38629 1.38629 1.38629 1.38629
5051 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5052 25 2.95037 3.59189 0.11671 3.49699 25 - -
5053 1.38629 1.38629 1.38629 1.38629
5054 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5055 26 3.09273 2.59776 3.14073 0.17801 26 - -
5056 1.38629 1.38629 1.38629 1.38629
5057 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5058 27 0.14136 3.38434 2.80457 3.28639 27 - -
5059 1.38629 1.38629 1.38629 1.38629
5060 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5061 28 3.43781 0.12965 3.48707 2.83242 28 - -
5062 1.38629 1.38629 1.38629 1.38629
5063 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5064 29 3.09273 2.59776 3.14073 0.17801 29 - -
5065 1.38629 1.38629 1.38629 1.38629
5066 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5067 30 3.43781 0.12965 3.48707 2.83242 30 - -
5068 1.38629 1.38629 1.38629 1.38629
5069 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5070 31 3.43781 0.12965 3.48707 2.83242 31 - -
5071 1.38629 1.38629 1.38629 1.38629
5072 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5073 32 3.43781 0.12965 3.48707 2.83242 32 - -
5074 1.38629 1.38629 1.38629 1.38629
5075 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5076 33 0.14136 3.38434 2.80457 3.28639 33 - -
5077 1.38629 1.38629 1.38629 1.38629
5078 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5079 34 2.82574 2.00897 2.88356 0.28679 34 - -
5080 1.38629 1.38629 1.38629 1.38629
5081 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5082 35 3.09273 2.59776 3.14073 0.17801 35 - -
5083 1.38629 1.38629 1.38629 1.38629
5084 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5085 36 3.09273 2.59776 3.14073 0.17801 36 - -
5086 1.38629 1.38629 1.38629 1.38629
5087 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5088 37 3.43781 0.12965 3.48707 2.83242 37 - -
5089 1.38629 1.38629 1.38629 1.38629
5090 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5091 38 0.14136 3.38434 2.80457 3.28639 38 - -
5092 1.38629 1.38629 1.38629 1.38629
5093 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5094 39 2.95037 3.59189 0.11671 3.49699 39 - -
5095 1.38629 1.38629 1.38629 1.38629
5096 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5097 40 3.09273 2.59776 3.14073 0.17801 40 - -
5098 1.38629 1.38629 1.38629 1.38629
5099 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5100 41 2.95037 3.59189 0.11671 3.49699 41 - -
5101 1.38629 1.38629 1.38629 1.38629
5102 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5103 42 0.14136 3.38434 2.80457 3.28639 42 - -
5104 1.38629 1.38629 1.38629 1.38629
5105 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5106 43 0.14136 3.38434 2.80457 3.28639 43 - -
5107 1.38629 1.38629 1.38629 1.38629
5108 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5109 44 3.43781 0.12965 3.48707 2.83242 44 - -
5110 1.38629 1.38629 1.38629 1.38629
5111 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547
5112 45 3.43781 0.12965 3.48707 2.83242 45 - -
5113 1.38629 1.38629 1.38629 1.38629
5114 0.01857 3.99553 * 1.46634 0.26236 0.00000 *
5115 //
5116 HMMER3/b [3.0 | March 2010]
5117 NAME 3_End_Alveolata_58S_end_thirteenb_long
5118 LENG 45
5119 ALPH DNA
5120 RF no
5121 CS no
5122 MAP yes
5123 DATE Wed Feb 29 22:53:51 2012
5124 NSEQ 20
5125 EFFN 3.344727
5126 CKSUM 3926777842
5127 STATS LOCAL MSV -8.0192 0.71933
5128 STATS LOCAL VITERBI -7.8856 0.71933
5129 STATS LOCAL FORWARD -3.6871 0.71933
5130 HMM A C G T
5131 m->m m->i m->d i->m i->i d->m d->d
5132 COMPO 1.72605 0.97133 1.46172 1.55306
5133 1.38629 1.38629 1.38629 1.38629
5134 0.03674 4.01543 4.01543 1.46634 0.26236 0.00000 *
5135 1 0.14097 3.38729 2.80649 3.28963 1 - -
5136 1.38629 1.38629 1.38629 1.38629
5137 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5138 2 3.44121 0.12925 3.49032 2.83489 2 - -
5139 1.38629 1.38629 1.38629 1.38629
5140 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5141 3 0.14097 3.38729 2.80649 3.28963 3 - -
5142 1.38629 1.38629 1.38629 1.38629
5143 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5144 4 3.44121 0.12925 3.49032 2.83489 4 - -
5145 1.38629 1.38629 1.38629 1.38629
5146 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5147 5 0.14097 3.38729 2.80649 3.28963 5 - -
5148 1.38629 1.38629 1.38629 1.38629
5149 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5150 6 3.44121 0.12925 3.49032 2.83489 6 - -
5151 1.38629 1.38629 1.38629 1.38629
5152 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5153 7 3.44121 0.12925 3.49032 2.83489 7 - -
5154 1.38629 1.38629 1.38629 1.38629
5155 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5156 8 2.95243 3.59489 0.11638 3.50030 8 - -
5157 1.38629 1.38629 1.38629 1.38629
5158 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5159 9 3.44121 0.12925 3.49032 2.83489 9 - -
5160 1.38629 1.38629 1.38629 1.38629
5161 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5162 10 3.44121 0.12925 3.49032 2.83489 10 - -
5163 1.38629 1.38629 1.38629 1.38629
5164 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5165 11 3.09571 2.59966 3.14360 0.17754 11 - -
5166 1.38629 1.38629 1.38629 1.38629
5167 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5168 12 3.44121 0.12925 3.49032 2.83489 12 - -
5169 1.38629 1.38629 1.38629 1.38629
5170 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5171 13 3.09571 2.59966 3.14360 0.17754 13 - -
5172 1.38629 1.38629 1.38629 1.38629
5173 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5174 14 2.95243 3.59489 0.11638 3.50030 14 - -
5175 1.38629 1.38629 1.38629 1.38629
5176 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5177 15 3.44121 0.12925 3.49032 2.83489 15 - -
5178 1.38629 1.38629 1.38629 1.38629
5179 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5180 16 3.09571 2.59966 3.14360 0.17754 16 - -
5181 1.38629 1.38629 1.38629 1.38629
5182 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5183 17 3.44121 0.12925 3.49032 2.83489 17 - -
5184 1.38629 1.38629 1.38629 1.38629
5185 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5186 18 2.95243 3.59489 0.11638 3.50030 18 - -
5187 1.38629 1.38629 1.38629 1.38629
5188 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5189 19 3.44121 0.12925 3.49032 2.83489 19 - -
5190 1.38629 1.38629 1.38629 1.38629
5191 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5192 20 0.14097 3.38729 2.80649 3.28963 20 - -
5193 1.38629 1.38629 1.38629 1.38629
5194 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5195 21 2.88258 0.29778 2.94754 1.90330 21 - -
5196 1.38629 1.38629 1.38629 1.38629
5197 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5198 22 2.95243 3.59489 0.11638 3.50030 22 - -
5199 1.38629 1.38629 1.38629 1.38629
5200 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5201 23 3.44121 0.12925 3.49032 2.83489 23 - -
5202 1.38629 1.38629 1.38629 1.38629
5203 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5204 24 2.95243 3.59489 0.11638 3.50030 24 - -
5205 1.38629 1.38629 1.38629 1.38629
5206 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5207 25 2.95243 3.59489 0.11638 3.50030 25 - -
5208 1.38629 1.38629 1.38629 1.38629
5209 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5210 26 3.09571 2.59966 3.14360 0.17754 26 - -
5211 1.38629 1.38629 1.38629 1.38629
5212 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5213 27 0.14097 3.38729 2.80649 3.28963 27 - -
5214 1.38629 1.38629 1.38629 1.38629
5215 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5216 28 3.44121 0.12925 3.49032 2.83489 28 - -
5217 1.38629 1.38629 1.38629 1.38629
5218 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5219 29 3.09571 2.59966 3.14360 0.17754 29 - -
5220 1.38629 1.38629 1.38629 1.38629
5221 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5222 30 3.44121 0.12925 3.49032 2.83489 30 - -
5223 1.38629 1.38629 1.38629 1.38629
5224 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5225 31 3.44121 0.12925 3.49032 2.83489 31 - -
5226 1.38629 1.38629 1.38629 1.38629
5227 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5228 32 3.44121 0.12925 3.49032 2.83489 32 - -
5229 1.38629 1.38629 1.38629 1.38629
5230 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5231 33 2.95243 3.59489 0.11638 3.50030 33 - -
5232 1.38629 1.38629 1.38629 1.38629
5233 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5234 34 3.09571 2.59966 3.14360 0.17754 34 - -
5235 1.38629 1.38629 1.38629 1.38629
5236 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5237 35 3.09571 2.59966 3.14360 0.17754 35 - -
5238 1.38629 1.38629 1.38629 1.38629
5239 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5240 36 3.09571 2.59966 3.14360 0.17754 36 - -
5241 1.38629 1.38629 1.38629 1.38629
5242 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5243 37 3.44121 0.12925 3.49032 2.83489 37 - -
5244 1.38629 1.38629 1.38629 1.38629
5245 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5246 38 0.14097 3.38729 2.80649 3.28963 38 - -
5247 1.38629 1.38629 1.38629 1.38629
5248 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5249 39 2.95243 3.59489 0.11638 3.50030 39 - -
5250 1.38629 1.38629 1.38629 1.38629
5251 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5252 40 3.09571 2.59966 3.14360 0.17754 40 - -
5253 1.38629 1.38629 1.38629 1.38629
5254 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5255 41 2.95243 3.59489 0.11638 3.50030 41 - -
5256 1.38629 1.38629 1.38629 1.38629
5257 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5258 42 0.14097 3.38729 2.80649 3.28963 42 - -
5259 1.38629 1.38629 1.38629 1.38629
5260 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5261 43 2.95243 3.59489 0.11638 3.50030 43 - -
5262 1.38629 1.38629 1.38629 1.38629
5263 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5264 44 3.03924 0.23563 3.10030 2.14542 44 - -
5265 1.38629 1.38629 1.38629 1.38629
5266 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547
5267 45 2.38711 0.31887 2.45124 2.35442 45 - -
5268 1.38629 1.38629 1.38629 1.38629
5269 0.01854 3.99723 * 1.46634 0.26236 0.00000 *
5270 //
5271 HMMER3/b [3.0 | March 2010]
5272 NAME 3_End_Alveolata_58S_end_thirteenbb_long
5273 LENG 45
5274 ALPH DNA
5275 RF no
5276 CS no
5277 MAP yes
5278 DATE Wed Feb 29 22:53:55 2012
5279 NSEQ 3
5280 EFFN 3.000000
5281 CKSUM 1469591864
5282 STATS LOCAL MSV -8.0813 0.72030
5283 STATS LOCAL VITERBI -7.7552 0.72030
5284 STATS LOCAL FORWARD -3.4416 0.72030
5285 HMM A C G T
5286 m->m m->i m->d i->m i->i d->m d->d
5287 COMPO 1.55466 1.04845 1.61897 1.42646
5288 1.38629 1.38629 1.38629 1.38629
5289 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
5290 1 0.15719 3.27118 2.73043 3.16274 1 - -
5291 1.38629 1.38629 1.38629 1.38629
5292 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5293 2 3.30705 0.14631 3.36166 2.73626 2 - -
5294 1.38629 1.38629 1.38629 1.38629
5295 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5296 3 0.15719 3.27118 2.73043 3.16274 3 - -
5297 1.38629 1.38629 1.38629 1.38629
5298 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5299 4 3.30705 0.14631 3.36166 2.73626 4 - -
5300 1.38629 1.38629 1.38629 1.38629
5301 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5302 5 0.15719 3.27118 2.73043 3.16274 5 - -
5303 1.38629 1.38629 1.38629 1.38629
5304 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5305 6 3.30705 0.14631 3.36166 2.73626 6 - -
5306 1.38629 1.38629 1.38629 1.38629
5307 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5308 7 3.30705 0.14631 3.36166 2.73626 7 - -
5309 1.38629 1.38629 1.38629 1.38629
5310 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5311 8 0.15719 3.27118 2.73043 3.16274 8 - -
5312 1.38629 1.38629 1.38629 1.38629
5313 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5314 9 3.30705 0.14631 3.36166 2.73626 9 - -
5315 1.38629 1.38629 1.38629 1.38629
5316 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5317 10 3.30705 0.14631 3.36166 2.73626 10 - -
5318 1.38629 1.38629 1.38629 1.38629
5319 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5320 11 2.97980 2.52563 3.03204 0.19727 11 - -
5321 1.38629 1.38629 1.38629 1.38629
5322 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5323 12 3.30705 0.14631 3.36166 2.73626 12 - -
5324 1.38629 1.38629 1.38629 1.38629
5325 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5326 13 2.97980 2.52563 3.03204 0.19727 13 - -
5327 1.38629 1.38629 1.38629 1.38629
5328 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5329 14 2.86982 3.47591 0.13017 3.36931 14 - -
5330 1.38629 1.38629 1.38629 1.38629
5331 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5332 15 3.30705 0.14631 3.36166 2.73626 15 - -
5333 1.38629 1.38629 1.38629 1.38629
5334 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5335 16 2.97980 2.52563 3.03204 0.19727 16 - -
5336 1.38629 1.38629 1.38629 1.38629
5337 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5338 17 3.30705 0.14631 3.36166 2.73626 17 - -
5339 1.38629 1.38629 1.38629 1.38629
5340 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5341 18 2.86982 3.47591 0.13017 3.36931 18 - -
5342 1.38629 1.38629 1.38629 1.38629
5343 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5344 19 3.30705 0.14631 3.36166 2.73626 19 - -
5345 1.38629 1.38629 1.38629 1.38629
5346 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5347 20 0.15719 3.27118 2.73043 3.16274 20 - -
5348 1.38629 1.38629 1.38629 1.38629
5349 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5350 21 3.30705 0.14631 3.36166 2.73626 21 - -
5351 1.38629 1.38629 1.38629 1.38629
5352 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5353 22 2.86982 3.47591 0.13017 3.36931 22 - -
5354 1.38629 1.38629 1.38629 1.38629
5355 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5356 23 2.97980 2.52563 3.03204 0.19727 23 - -
5357 1.38629 1.38629 1.38629 1.38629
5358 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5359 24 2.86982 3.47591 0.13017 3.36931 24 - -
5360 1.38629 1.38629 1.38629 1.38629
5361 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5362 25 2.86982 3.47591 0.13017 3.36931 25 - -
5363 1.38629 1.38629 1.38629 1.38629
5364 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5365 26 2.97980 2.52563 3.03204 0.19727 26 - -
5366 1.38629 1.38629 1.38629 1.38629
5367 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5368 27 0.15719 3.27118 2.73043 3.16274 27 - -
5369 1.38629 1.38629 1.38629 1.38629
5370 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5371 28 3.30705 0.14631 3.36166 2.73626 28 - -
5372 1.38629 1.38629 1.38629 1.38629
5373 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5374 29 2.97980 2.52563 3.03204 0.19727 29 - -
5375 1.38629 1.38629 1.38629 1.38629
5376 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5377 30 3.30705 0.14631 3.36166 2.73626 30 - -
5378 1.38629 1.38629 1.38629 1.38629
5379 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5380 31 3.30705 0.14631 3.36166 2.73626 31 - -
5381 1.38629 1.38629 1.38629 1.38629
5382 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5383 32 3.30705 0.14631 3.36166 2.73626 32 - -
5384 1.38629 1.38629 1.38629 1.38629
5385 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5386 33 0.15719 3.27118 2.73043 3.16274 33 - -
5387 1.38629 1.38629 1.38629 1.38629
5388 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5389 34 2.97980 2.52563 3.03204 0.19727 34 - -
5390 1.38629 1.38629 1.38629 1.38629
5391 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5392 35 3.30705 0.14631 3.36166 2.73626 35 - -
5393 1.38629 1.38629 1.38629 1.38629
5394 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5395 36 2.97980 2.52563 3.03204 0.19727 36 - -
5396 1.38629 1.38629 1.38629 1.38629
5397 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5398 37 3.30705 0.14631 3.36166 2.73626 37 - -
5399 1.38629 1.38629 1.38629 1.38629
5400 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5401 38 0.15719 3.27118 2.73043 3.16274 38 - -
5402 1.38629 1.38629 1.38629 1.38629
5403 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5404 39 2.86982 3.47591 0.13017 3.36931 39 - -
5405 1.38629 1.38629 1.38629 1.38629
5406 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5407 40 2.97980 2.52563 3.03204 0.19727 40 - -
5408 1.38629 1.38629 1.38629 1.38629
5409 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5410 41 2.86982 3.47591 0.13017 3.36931 41 - -
5411 1.38629 1.38629 1.38629 1.38629
5412 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5413 42 0.15719 3.27118 2.73043 3.16274 42 - -
5414 1.38629 1.38629 1.38629 1.38629
5415 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5416 43 2.86982 3.47591 0.13017 3.36931 43 - -
5417 1.38629 1.38629 1.38629 1.38629
5418 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5419 44 2.97980 2.52563 3.03204 0.19727 44 - -
5420 1.38629 1.38629 1.38629 1.38629
5421 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5422 45 2.97980 2.52563 3.03204 0.19727 45 - -
5423 1.38629 1.38629 1.38629 1.38629
5424 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
5425 //
5426 HMMER3/b [3.0 | March 2010]
5427 NAME 3_End_Alveolata_58S_end_thirteenc_long
5428 LENG 45
5429 ALPH DNA
5430 RF no
5431 CS no
5432 MAP yes
5433 DATE Wed Feb 29 22:54:02 2012
5434 NSEQ 6
5435 EFFN 3.676758
5436 CKSUM 138006768
5437 STATS LOCAL MSV -7.7146 0.71932
5438 STATS LOCAL VITERBI -7.6336 0.71932
5439 STATS LOCAL FORWARD -4.1384 0.71932
5440 HMM A C G T
5441 m->m m->i m->d i->m i->i d->m d->d
5442 COMPO 1.56284 1.02897 1.71089 1.37681
5443 1.38629 1.38629 1.38629 1.38629
5444 0.03462 4.07359 4.07359 1.46634 0.26236 0.00000 *
5445 1 0.12855 3.48721 2.87098 3.39919 1 - -
5446 1.38629 1.38629 1.38629 1.38629
5447 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5448 2 3.55586 0.11648 3.59995 2.91754 2 - -
5449 1.38629 1.38629 1.38629 1.38629
5450 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5451 3 0.12855 3.48721 2.87098 3.39919 3 - -
5452 1.38629 1.38629 1.38629 1.38629
5453 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5454 4 3.55586 0.11648 3.59995 2.91754 4 - -
5455 1.38629 1.38629 1.38629 1.38629
5456 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5457 5 0.12855 3.48721 2.87098 3.39919 5 - -
5458 1.38629 1.38629 1.38629 1.38629
5459 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5460 6 3.55586 0.11648 3.59995 2.91754 6 - -
5461 1.38629 1.38629 1.38629 1.38629
5462 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5463 7 3.19790 2.66450 3.24182 0.16202 7 - -
5464 1.38629 1.38629 1.38629 1.38629
5465 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5466 8 3.02074 3.69511 0.10606 3.61119 8 - -
5467 1.38629 1.38629 1.38629 1.38629
5468 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5469 9 3.55586 0.11648 3.59995 2.91754 9 - -
5470 1.38629 1.38629 1.38629 1.38629
5471 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5472 10 3.55586 0.11648 3.59995 2.91754 10 - -
5473 1.38629 1.38629 1.38629 1.38629
5474 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5475 11 3.19790 2.66450 3.24182 0.16202 11 - -
5476 1.38629 1.38629 1.38629 1.38629
5477 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5478 12 3.55586 0.11648 3.59995 2.91754 12 - -
5479 1.38629 1.38629 1.38629 1.38629
5480 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5481 13 3.19790 2.66450 3.24182 0.16202 13 - -
5482 1.38629 1.38629 1.38629 1.38629
5483 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5484 14 3.02074 3.69511 0.10606 3.61119 14 - -
5485 1.38629 1.38629 1.38629 1.38629
5486 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5487 15 3.19790 2.66450 3.24182 0.16202 15 - -
5488 1.38629 1.38629 1.38629 1.38629
5489 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5490 16 3.19790 2.66450 3.24182 0.16202 16 - -
5491 1.38629 1.38629 1.38629 1.38629
5492 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5493 17 3.19790 2.66450 3.24182 0.16202 17 - -
5494 1.38629 1.38629 1.38629 1.38629
5495 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5496 18 0.94052 1.00771 2.17954 2.02929 18 - -
5497 1.38629 1.38629 1.38629 1.38629
5498 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5499 19 3.55586 0.11648 3.59995 2.91754 19 - -
5500 1.38629 1.38629 1.38629 1.38629
5501 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5502 20 0.12855 3.48721 2.87098 3.39919 20 - -
5503 1.38629 1.38629 1.38629 1.38629
5504 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5505 21 0.66712 2.29396 2.24218 1.27396 21 - -
5506 1.38629 1.38629 1.38629 1.38629
5507 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5508 22 3.02074 3.69511 0.10606 3.61119 22 - -
5509 1.38629 1.38629 1.38629 1.38629
5510 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5511 23 3.55586 0.11648 3.59995 2.91754 23 - -
5512 1.38629 1.38629 1.38629 1.38629
5513 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5514 24 0.12855 3.48721 2.87098 3.39919 24 - -
5515 1.38629 1.38629 1.38629 1.38629
5516 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5517 25 3.02074 3.69511 0.10606 3.61119 25 - -
5518 1.38629 1.38629 1.38629 1.38629
5519 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5520 26 3.19790 2.66450 3.24182 0.16202 26 - -
5521 1.38629 1.38629 1.38629 1.38629
5522 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5523 27 3.02074 3.69511 0.10606 3.61119 27 - -
5524 1.38629 1.38629 1.38629 1.38629
5525 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5526 28 3.55586 0.11648 3.59995 2.91754 28 - -
5527 1.38629 1.38629 1.38629 1.38629
5528 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5529 29 0.12855 3.48721 2.87098 3.39919 29 - -
5530 1.38629 1.38629 1.38629 1.38629
5531 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5532 30 3.55586 0.11648 3.59995 2.91754 30 - -
5533 1.38629 1.38629 1.38629 1.38629
5534 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5535 31 3.55586 0.11648 3.59995 2.91754 31 - -
5536 1.38629 1.38629 1.38629 1.38629
5537 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5538 32 3.55586 0.11648 3.59995 2.91754 32 - -
5539 1.38629 1.38629 1.38629 1.38629
5540 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5541 33 0.12855 3.48721 2.87098 3.39919 33 - -
5542 1.38629 1.38629 1.38629 1.38629
5543 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5544 34 3.19790 2.66450 3.24182 0.16202 34 - -
5545 1.38629 1.38629 1.38629 1.38629
5546 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5547 35 3.19790 2.66450 3.24182 0.16202 35 - -
5548 1.38629 1.38629 1.38629 1.38629
5549 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5550 36 3.19790 2.66450 3.24182 0.16202 36 - -
5551 1.38629 1.38629 1.38629 1.38629
5552 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5553 37 3.55586 0.11648 3.59995 2.91754 37 - -
5554 1.38629 1.38629 1.38629 1.38629
5555 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5556 38 0.12855 3.48721 2.87098 3.39919 38 - -
5557 1.38629 1.38629 1.38629 1.38629
5558 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5559 39 3.02074 3.69511 0.10606 3.61119 39 - -
5560 1.38629 1.38629 1.38629 1.38629
5561 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5562 40 3.55586 0.11648 3.59995 2.91754 40 - -
5563 1.38629 1.38629 1.38629 1.38629
5564 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5565 41 3.02074 3.69511 0.10606 3.61119 41 - -
5566 1.38629 1.38629 1.38629 1.38629
5567 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5568 42 3.55586 0.11648 3.59995 2.91754 42 - -
5569 1.38629 1.38629 1.38629 1.38629
5570 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5571 43 3.55586 0.11648 3.59995 2.91754 43 - -
5572 1.38629 1.38629 1.38629 1.38629
5573 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5574 44 3.19790 2.66450 3.24182 0.16202 44 - -
5575 1.38629 1.38629 1.38629 1.38629
5576 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547
5577 45 2.56017 0.58808 2.63122 1.21967 45 - -
5578 1.38629 1.38629 1.38629 1.38629
5579 0.01746 4.05643 * 1.46634 0.26236 0.00000 *
5580 //
5581 HMMER3/b [3.0 | March 2010]
5582 NAME 3_End_Alveolata_58S_end_threea_long
5583 LENG 45
5584 ALPH DNA
5585 RF no
5586 CS no
5587 MAP yes
5588 DATE Wed Feb 29 22:46:58 2012
5589 NSEQ 2
5590 EFFN 2.000000
5591 CKSUM 1268247449
5592 STATS LOCAL MSV -7.3625 0.72824
5593 STATS LOCAL VITERBI -8.2348 0.72824
5594 STATS LOCAL FORWARD -3.6133 0.72824
5595 HMM A C G T
5596 m->m m->i m->d i->m i->i d->m d->d
5597 COMPO 1.66059 1.44581 1.26603 1.22940
5598 1.38629 1.38629 1.38629 1.38629
5599 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
5600 1 2.81865 0.23582 2.88868 2.35662 1 - -
5601 1.38629 1.38629 1.38629 1.38629
5602 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5603 2 2.53331 3.02441 0.20344 2.88069 2 - -
5604 1.38629 1.38629 1.38629 1.38629
5605 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5606 3 2.81865 0.23582 2.88868 2.35662 3 - -
5607 1.38629 1.38629 1.38629 1.38629
5608 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5609 4 2.57915 2.25909 2.64442 0.28946 4 - -
5610 1.38629 1.38629 1.38629 1.38629
5611 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5612 5 2.57915 2.25909 2.64442 0.28946 5 - -
5613 1.38629 1.38629 1.38629 1.38629
5614 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5615 6 2.57915 2.25909 2.64442 0.28946 6 - -
5616 1.38629 1.38629 1.38629 1.38629
5617 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5618 7 2.81865 0.23582 2.88868 2.35662 7 - -
5619 1.38629 1.38629 1.38629 1.38629
5620 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5621 8 2.53331 3.02441 0.20344 2.88069 8 - -
5622 1.38629 1.38629 1.38629 1.38629
5623 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5624 9 2.53331 3.02441 0.20344 2.88069 9 - -
5625 1.38629 1.38629 1.38629 1.38629
5626 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5627 10 2.53331 3.02441 0.20344 2.88069 10 - -
5628 1.38629 1.38629 1.38629 1.38629
5629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5630 11 2.81865 0.23582 2.88868 2.35662 11 - -
5631 1.38629 1.38629 1.38629 1.38629
5632 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5633 12 2.57915 2.25909 2.64442 0.28946 12 - -
5634 1.38629 1.38629 1.38629 1.38629
5635 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5636 13 0.23862 2.84929 2.43386 2.70756 13 - -
5637 1.38629 1.38629 1.38629 1.38629
5638 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5639 14 2.57915 2.25909 2.64442 0.28946 14 - -
5640 1.38629 1.38629 1.38629 1.38629
5641 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5642 15 0.23862 2.84929 2.43386 2.70756 15 - -
5643 1.38629 1.38629 1.38629 1.38629
5644 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5645 16 2.81865 0.23582 2.88868 2.35662 16 - -
5646 1.38629 1.38629 1.38629 1.38629
5647 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5648 17 2.81865 0.23582 2.88868 2.35662 17 - -
5649 1.38629 1.38629 1.38629 1.38629
5650 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5651 18 2.57915 2.25909 2.64442 0.28946 18 - -
5652 1.38629 1.38629 1.38629 1.38629
5653 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5654 19 2.53331 3.02441 0.20344 2.88069 19 - -
5655 1.38629 1.38629 1.38629 1.38629
5656 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5657 20 0.23862 2.84929 2.43386 2.70756 20 - -
5658 1.38629 1.38629 1.38629 1.38629
5659 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5660 21 0.23862 2.84929 2.43386 2.70756 21 - -
5661 1.38629 1.38629 1.38629 1.38629
5662 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5663 22 0.23862 2.84929 2.43386 2.70756 22 - -
5664 1.38629 1.38629 1.38629 1.38629
5665 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5666 23 2.53331 3.02441 0.20344 2.88069 23 - -
5667 1.38629 1.38629 1.38629 1.38629
5668 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5669 24 2.81865 0.23582 2.88868 2.35662 24 - -
5670 1.38629 1.38629 1.38629 1.38629
5671 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5672 25 0.23862 2.84929 2.43386 2.70756 25 - -
5673 1.38629 1.38629 1.38629 1.38629
5674 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5675 26 2.57915 2.25909 2.64442 0.28946 26 - -
5676 1.38629 1.38629 1.38629 1.38629
5677 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5678 27 2.53331 3.02441 0.20344 2.88069 27 - -
5679 1.38629 1.38629 1.38629 1.38629
5680 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5681 28 2.57915 2.25909 2.64442 0.28946 28 - -
5682 1.38629 1.38629 1.38629 1.38629
5683 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5684 29 2.81865 0.23582 2.88868 2.35662 29 - -
5685 1.38629 1.38629 1.38629 1.38629
5686 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5687 30 2.57915 2.25909 2.64442 0.28946 30 - -
5688 1.38629 1.38629 1.38629 1.38629
5689 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5690 31 2.53331 3.02441 0.20344 2.88069 31 - -
5691 1.38629 1.38629 1.38629 1.38629
5692 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5693 32 2.81865 0.23582 2.88868 2.35662 32 - -
5694 1.38629 1.38629 1.38629 1.38629
5695 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5696 33 2.53331 3.02441 0.20344 2.88069 33 - -
5697 1.38629 1.38629 1.38629 1.38629
5698 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5699 34 2.57915 2.25909 2.64442 0.28946 34 - -
5700 1.38629 1.38629 1.38629 1.38629
5701 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5702 35 2.57915 2.25909 2.64442 0.28946 35 - -
5703 1.38629 1.38629 1.38629 1.38629
5704 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5705 36 2.53331 3.02441 0.20344 2.88069 36 - -
5706 1.38629 1.38629 1.38629 1.38629
5707 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5708 37 2.53331 3.02441 0.20344 2.88069 37 - -
5709 1.38629 1.38629 1.38629 1.38629
5710 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5711 38 2.57915 2.25909 2.64442 0.28946 38 - -
5712 1.38629 1.38629 1.38629 1.38629
5713 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5714 39 2.53331 3.02441 0.20344 2.88069 39 - -
5715 1.38629 1.38629 1.38629 1.38629
5716 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5717 40 2.57915 2.25909 2.64442 0.28946 40 - -
5718 1.38629 1.38629 1.38629 1.38629
5719 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5720 41 2.81865 0.23582 2.88868 2.35662 41 - -
5721 1.38629 1.38629 1.38629 1.38629
5722 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5723 42 2.57915 2.25909 2.64442 0.28946 42 - -
5724 1.38629 1.38629 1.38629 1.38629
5725 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5726 43 2.53331 3.02441 0.20344 2.88069 43 - -
5727 1.38629 1.38629 1.38629 1.38629
5728 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5729 44 2.57915 2.25909 2.64442 0.28946 44 - -
5730 1.38629 1.38629 1.38629 1.38629
5731 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
5732 45 0.23862 2.84929 2.43386 2.70756 45 - -
5733 1.38629 1.38629 1.38629 1.38629
5734 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
5735 //
5736 HMMER3/b [3.0 | March 2010]
5737 NAME 3_End_Alveolata_58S_end_threeb_long
5738 LENG 45
5739 ALPH DNA
5740 RF no
5741 CS no
5742 MAP yes
5743 DATE Wed Feb 29 22:47:05 2012
5744 NSEQ 3
5745 EFFN 3.000000
5746 CKSUM 3892526639
5747 STATS LOCAL MSV -7.9454 0.72246
5748 STATS LOCAL VITERBI -7.9639 0.72246
5749 STATS LOCAL FORWARD -4.0448 0.72246
5750 HMM A C G T
5751 m->m m->i m->d i->m i->i d->m d->d
5752 COMPO 1.78275 1.43417 1.30656 1.13083
5753 1.38629 1.38629 1.38629 1.38629
5754 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
5755 1 2.97980 2.52563 3.03204 0.19727 1 - -
5756 1.38629 1.38629 1.38629 1.38629
5757 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5758 2 2.86982 3.47591 0.13017 3.36931 2 - -
5759 1.38629 1.38629 1.38629 1.38629
5760 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5761 3 3.30705 0.14631 3.36166 2.73626 3 - -
5762 1.38629 1.38629 1.38629 1.38629
5763 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5764 4 2.97980 2.52563 3.03204 0.19727 4 - -
5765 1.38629 1.38629 1.38629 1.38629
5766 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5767 5 2.10551 2.22611 0.68843 1.31713 5 - -
5768 1.38629 1.38629 1.38629 1.38629
5769 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5770 6 2.97980 2.52563 3.03204 0.19727 6 - -
5771 1.38629 1.38629 1.38629 1.38629
5772 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5773 7 2.97980 2.52563 3.03204 0.19727 7 - -
5774 1.38629 1.38629 1.38629 1.38629
5775 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5776 8 2.86982 3.47591 0.13017 3.36931 8 - -
5777 1.38629 1.38629 1.38629 1.38629
5778 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5779 9 2.86982 3.47591 0.13017 3.36931 9 - -
5780 1.38629 1.38629 1.38629 1.38629
5781 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5782 10 2.86982 3.47591 0.13017 3.36931 10 - -
5783 1.38629 1.38629 1.38629 1.38629
5784 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5785 11 0.15719 3.27118 2.73043 3.16274 11 - -
5786 1.38629 1.38629 1.38629 1.38629
5787 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5788 12 2.97980 2.52563 3.03204 0.19727 12 - -
5789 1.38629 1.38629 1.38629 1.38629
5790 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5791 13 0.15719 3.27118 2.73043 3.16274 13 - -
5792 1.38629 1.38629 1.38629 1.38629
5793 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5794 14 2.97980 2.52563 3.03204 0.19727 14 - -
5795 1.38629 1.38629 1.38629 1.38629
5796 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5797 15 0.15719 3.27118 2.73043 3.16274 15 - -
5798 1.38629 1.38629 1.38629 1.38629
5799 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5800 16 3.30705 0.14631 3.36166 2.73626 16 - -
5801 1.38629 1.38629 1.38629 1.38629
5802 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5803 17 3.30705 0.14631 3.36166 2.73626 17 - -
5804 1.38629 1.38629 1.38629 1.38629
5805 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5806 18 2.97980 2.52563 3.03204 0.19727 18 - -
5807 1.38629 1.38629 1.38629 1.38629
5808 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5809 19 2.86982 3.47591 0.13017 3.36931 19 - -
5810 1.38629 1.38629 1.38629 1.38629
5811 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5812 20 0.15719 3.27118 2.73043 3.16274 20 - -
5813 1.38629 1.38629 1.38629 1.38629
5814 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5815 21 3.30705 0.14631 3.36166 2.73626 21 - -
5816 1.38629 1.38629 1.38629 1.38629
5817 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5818 22 0.15719 3.27118 2.73043 3.16274 22 - -
5819 1.38629 1.38629 1.38629 1.38629
5820 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5821 23 2.86982 3.47591 0.13017 3.36931 23 - -
5822 1.38629 1.38629 1.38629 1.38629
5823 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5824 24 3.30705 0.14631 3.36166 2.73626 24 - -
5825 1.38629 1.38629 1.38629 1.38629
5826 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5827 25 0.15719 3.27118 2.73043 3.16274 25 - -
5828 1.38629 1.38629 1.38629 1.38629
5829 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5830 26 2.97980 2.52563 3.03204 0.19727 26 - -
5831 1.38629 1.38629 1.38629 1.38629
5832 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5833 27 2.86982 3.47591 0.13017 3.36931 27 - -
5834 1.38629 1.38629 1.38629 1.38629
5835 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5836 28 3.30705 0.14631 3.36166 2.73626 28 - -
5837 1.38629 1.38629 1.38629 1.38629
5838 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5839 29 3.30705 0.14631 3.36166 2.73626 29 - -
5840 1.38629 1.38629 1.38629 1.38629
5841 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5842 30 2.97980 2.52563 3.03204 0.19727 30 - -
5843 1.38629 1.38629 1.38629 1.38629
5844 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5845 31 2.86982 3.47591 0.13017 3.36931 31 - -
5846 1.38629 1.38629 1.38629 1.38629
5847 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5848 32 2.09516 1.42731 0.67263 2.06647 32 - -
5849 1.38629 1.38629 1.38629 1.38629
5850 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5851 33 2.97980 2.52563 3.03204 0.19727 33 - -
5852 1.38629 1.38629 1.38629 1.38629
5853 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5854 34 2.97980 2.52563 3.03204 0.19727 34 - -
5855 1.38629 1.38629 1.38629 1.38629
5856 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5857 35 2.97980 2.52563 3.03204 0.19727 35 - -
5858 1.38629 1.38629 1.38629 1.38629
5859 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5860 36 2.86982 3.47591 0.13017 3.36931 36 - -
5861 1.38629 1.38629 1.38629 1.38629
5862 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5863 37 2.86982 3.47591 0.13017 3.36931 37 - -
5864 1.38629 1.38629 1.38629 1.38629
5865 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5866 38 2.42587 0.63365 2.49879 1.20810 38 - -
5867 1.38629 1.38629 1.38629 1.38629
5868 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5869 39 2.86982 3.47591 0.13017 3.36931 39 - -
5870 1.38629 1.38629 1.38629 1.38629
5871 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5872 40 2.42586 1.33558 2.49582 0.56887 40 - -
5873 1.38629 1.38629 1.38629 1.38629
5874 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5875 41 3.30705 0.14631 3.36166 2.73626 41 - -
5876 1.38629 1.38629 1.38629 1.38629
5877 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5878 42 2.97980 2.52563 3.03204 0.19727 42 - -
5879 1.38629 1.38629 1.38629 1.38629
5880 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5881 43 2.97980 2.52563 3.03204 0.19727 43 - -
5882 1.38629 1.38629 1.38629 1.38629
5883 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5884 44 3.30705 0.14631 3.36166 2.73626 44 - -
5885 1.38629 1.38629 1.38629 1.38629
5886 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5887 45 2.97980 2.52563 3.03204 0.19727 45 - -
5888 1.38629 1.38629 1.38629 1.38629
5889 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
5890 //
5891 HMMER3/b [3.0 | March 2010]
5892 NAME 3_End_Alveolata_58S_end_threec_long
5893 LENG 45
5894 ALPH DNA
5895 RF no
5896 CS no
5897 MAP yes
5898 DATE Wed Feb 29 22:47:11 2012
5899 NSEQ 3
5900 EFFN 3.000000
5901 CKSUM 4079785563
5902 STATS LOCAL MSV -8.0314 0.72082
5903 STATS LOCAL VITERBI -7.8511 0.72082
5904 STATS LOCAL FORWARD -3.9522 0.72082
5905 HMM A C G T
5906 m->m m->i m->d i->m i->i d->m d->d
5907 COMPO 1.62542 1.59063 1.38012 1.05605
5908 1.38629 1.38629 1.38629 1.38629
5909 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
5910 1 2.97980 2.52563 3.03204 0.19727 1 - -
5911 1.38629 1.38629 1.38629 1.38629
5912 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5913 2 2.86982 3.47591 0.13017 3.36931 2 - -
5914 1.38629 1.38629 1.38629 1.38629
5915 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5916 3 3.30705 0.14631 3.36166 2.73626 3 - -
5917 1.38629 1.38629 1.38629 1.38629
5918 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5919 4 2.97980 2.52563 3.03204 0.19727 4 - -
5920 1.38629 1.38629 1.38629 1.38629
5921 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5922 5 2.97980 2.52563 3.03204 0.19727 5 - -
5923 1.38629 1.38629 1.38629 1.38629
5924 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5925 6 2.97980 2.52563 3.03204 0.19727 6 - -
5926 1.38629 1.38629 1.38629 1.38629
5927 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5928 7 2.97980 2.52563 3.03204 0.19727 7 - -
5929 1.38629 1.38629 1.38629 1.38629
5930 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5931 8 2.86982 3.47591 0.13017 3.36931 8 - -
5932 1.38629 1.38629 1.38629 1.38629
5933 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5934 9 2.86982 3.47591 0.13017 3.36931 9 - -
5935 1.38629 1.38629 1.38629 1.38629
5936 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5937 10 2.86982 3.47591 0.13017 3.36931 10 - -
5938 1.38629 1.38629 1.38629 1.38629
5939 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5940 11 0.15719 3.27118 2.73043 3.16274 11 - -
5941 1.38629 1.38629 1.38629 1.38629
5942 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5943 12 2.97980 2.52563 3.03204 0.19727 12 - -
5944 1.38629 1.38629 1.38629 1.38629
5945 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5946 13 0.15719 3.27118 2.73043 3.16274 13 - -
5947 1.38629 1.38629 1.38629 1.38629
5948 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5949 14 2.97980 2.52563 3.03204 0.19727 14 - -
5950 1.38629 1.38629 1.38629 1.38629
5951 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5952 15 0.15719 3.27118 2.73043 3.16274 15 - -
5953 1.38629 1.38629 1.38629 1.38629
5954 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5955 16 3.30705 0.14631 3.36166 2.73626 16 - -
5956 1.38629 1.38629 1.38629 1.38629
5957 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5958 17 3.30705 0.14631 3.36166 2.73626 17 - -
5959 1.38629 1.38629 1.38629 1.38629
5960 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5961 18 2.97980 2.52563 3.03204 0.19727 18 - -
5962 1.38629 1.38629 1.38629 1.38629
5963 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5964 19 2.86982 3.47591 0.13017 3.36931 19 - -
5965 1.38629 1.38629 1.38629 1.38629
5966 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5967 20 0.15719 3.27118 2.73043 3.16274 20 - -
5968 1.38629 1.38629 1.38629 1.38629
5969 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5970 21 0.15719 3.27118 2.73043 3.16274 21 - -
5971 1.38629 1.38629 1.38629 1.38629
5972 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5973 22 0.15719 3.27118 2.73043 3.16274 22 - -
5974 1.38629 1.38629 1.38629 1.38629
5975 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5976 23 2.86982 3.47591 0.13017 3.36931 23 - -
5977 1.38629 1.38629 1.38629 1.38629
5978 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5979 24 3.30705 0.14631 3.36166 2.73626 24 - -
5980 1.38629 1.38629 1.38629 1.38629
5981 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5982 25 0.15719 3.27118 2.73043 3.16274 25 - -
5983 1.38629 1.38629 1.38629 1.38629
5984 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5985 26 2.97980 2.52563 3.03204 0.19727 26 - -
5986 1.38629 1.38629 1.38629 1.38629
5987 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5988 27 2.86982 3.47591 0.13017 3.36931 27 - -
5989 1.38629 1.38629 1.38629 1.38629
5990 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5991 28 3.30705 0.14631 3.36166 2.73626 28 - -
5992 1.38629 1.38629 1.38629 1.38629
5993 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5994 29 3.30705 0.14631 3.36166 2.73626 29 - -
5995 1.38629 1.38629 1.38629 1.38629
5996 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
5997 30 2.97980 2.52563 3.03204 0.19727 30 - -
5998 1.38629 1.38629 1.38629 1.38629
5999 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
6000 31 2.86982 3.47591 0.13017 3.36931 31 - -
6001 1.38629 1.38629 1.38629 1.38629
6002 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
6003 32 3.30705 0.14631 3.36166 2.73626 32 - -
6004 1.38629 1.38629 1.38629 1.38629
6005 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
6006 33 2.97980 2.52563 3.03204 0.19727 33 - -
6007 1.38629 1.38629 1.38629 1.38629
6008 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
6009 34 2.97980 2.52563 3.03204 0.19727 34 - -
6010 1.38629 1.38629 1.38629 1.38629
6011 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
6012 35 2.97980 2.52563 3.03204 0.19727 35 - -
6013 1.38629 1.38629 1.38629 1.38629
6014 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
6015 36 2.86982 3.47591 0.13017 3.36931 36 - -
6016 1.38629 1.38629 1.38629 1.38629
6017 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
6018 37 2.86982 3.47591 0.13017 3.36931 37 - -
6019 1.38629 1.38629 1.38629 1.38629
6020 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
6021 38 2.97980 2.52563 3.03204 0.19727 38 - -
6022 1.38629 1.38629 1.38629 1.38629
6023 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
6024 39 2.86982 3.47591 0.13017 3.36931 39 - -
6025 1.38629 1.38629 1.38629 1.38629
6026 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
6027 40 2.97980 2.52563 3.03204 0.19727 40 - -
6028 1.38629 1.38629 1.38629 1.38629
6029 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
6030 41 3.30705 0.14631 3.36166 2.73626 41 - -
6031 1.38629 1.38629 1.38629 1.38629
6032 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
6033 42 2.97980 2.52563 3.03204 0.19727 42 - -
6034 1.38629 1.38629 1.38629 1.38629
6035 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
6036 43 0.15719 3.27118 2.73043 3.16274 43 - -
6037 1.38629 1.38629 1.38629 1.38629
6038 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
6039 44 2.97980 2.52563 3.03204 0.19727 44 - -
6040 1.38629 1.38629 1.38629 1.38629
6041 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
6042 45 2.97980 2.52563 3.03204 0.19727 45 - -
6043 1.38629 1.38629 1.38629 1.38629
6044 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
6045 //
6046 HMMER3/b [3.0 | March 2010]
6047 NAME 3_End_Alveolata_58S_end_threed_long
6048 LENG 45
6049 ALPH DNA
6050 RF no
6051 CS no
6052 MAP yes
6053 DATE Wed Feb 29 22:47:17 2012
6054 NSEQ 2
6055 EFFN 2.000000
6056 CKSUM 3952366831
6057 STATS LOCAL MSV -7.3931 0.72871
6058 STATS LOCAL VITERBI -8.1902 0.72871
6059 STATS LOCAL FORWARD -3.4651 0.72871
6060 HMM A C G T
6061 m->m m->i m->d i->m i->i d->m d->d
6062 COMPO 1.70464 1.38559 1.24625 1.27151
6063 1.38629 1.38629 1.38629 1.38629
6064 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
6065 1 2.81865 0.23582 2.88868 2.35662 1 - -
6066 1.38629 1.38629 1.38629 1.38629
6067 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6068 2 2.53331 3.02441 0.20344 2.88069 2 - -
6069 1.38629 1.38629 1.38629 1.38629
6070 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6071 3 2.81865 0.23582 2.88868 2.35662 3 - -
6072 1.38629 1.38629 1.38629 1.38629
6073 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6074 4 2.57915 2.25909 2.64442 0.28946 4 - -
6075 1.38629 1.38629 1.38629 1.38629
6076 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6077 5 2.57915 2.25909 2.64442 0.28946 5 - -
6078 1.38629 1.38629 1.38629 1.38629
6079 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6080 6 2.57915 2.25909 2.64442 0.28946 6 - -
6081 1.38629 1.38629 1.38629 1.38629
6082 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6083 7 2.81865 0.23582 2.88868 2.35662 7 - -
6084 1.38629 1.38629 1.38629 1.38629
6085 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6086 8 2.53331 3.02441 0.20344 2.88069 8 - -
6087 1.38629 1.38629 1.38629 1.38629
6088 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6089 9 2.53331 3.02441 0.20344 2.88069 9 - -
6090 1.38629 1.38629 1.38629 1.38629
6091 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6092 10 2.53331 3.02441 0.20344 2.88069 10 - -
6093 1.38629 1.38629 1.38629 1.38629
6094 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6095 11 2.81865 0.23582 2.88868 2.35662 11 - -
6096 1.38629 1.38629 1.38629 1.38629
6097 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6098 12 2.57915 2.25909 2.64442 0.28946 12 - -
6099 1.38629 1.38629 1.38629 1.38629
6100 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6101 13 0.23862 2.84929 2.43386 2.70756 13 - -
6102 1.38629 1.38629 1.38629 1.38629
6103 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6104 14 2.57915 2.25909 2.64442 0.28946 14 - -
6105 1.38629 1.38629 1.38629 1.38629
6106 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6107 15 0.23862 2.84929 2.43386 2.70756 15 - -
6108 1.38629 1.38629 1.38629 1.38629
6109 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6110 16 2.81865 0.23582 2.88868 2.35662 16 - -
6111 1.38629 1.38629 1.38629 1.38629
6112 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6113 17 2.81865 0.23582 2.88868 2.35662 17 - -
6114 1.38629 1.38629 1.38629 1.38629
6115 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6116 18 2.57915 2.25909 2.64442 0.28946 18 - -
6117 1.38629 1.38629 1.38629 1.38629
6118 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6119 19 2.53331 3.02441 0.20344 2.88069 19 - -
6120 1.38629 1.38629 1.38629 1.38629
6121 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6122 20 0.23862 2.84929 2.43386 2.70756 20 - -
6123 1.38629 1.38629 1.38629 1.38629
6124 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6125 21 0.23862 2.84929 2.43386 2.70756 21 - -
6126 1.38629 1.38629 1.38629 1.38629
6127 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6128 22 0.23862 2.84929 2.43386 2.70756 22 - -
6129 1.38629 1.38629 1.38629 1.38629
6130 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6131 23 2.53331 3.02441 0.20344 2.88069 23 - -
6132 1.38629 1.38629 1.38629 1.38629
6133 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6134 24 2.81865 0.23582 2.88868 2.35662 24 - -
6135 1.38629 1.38629 1.38629 1.38629
6136 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6137 25 0.23862 2.84929 2.43386 2.70756 25 - -
6138 1.38629 1.38629 1.38629 1.38629
6139 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6140 26 2.57915 2.25909 2.64442 0.28946 26 - -
6141 1.38629 1.38629 1.38629 1.38629
6142 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6143 27 2.53331 3.02441 0.20344 2.88069 27 - -
6144 1.38629 1.38629 1.38629 1.38629
6145 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6146 28 2.81865 0.23582 2.88868 2.35662 28 - -
6147 1.38629 1.38629 1.38629 1.38629
6148 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6149 29 2.81865 0.23582 2.88868 2.35662 29 - -
6150 1.38629 1.38629 1.38629 1.38629
6151 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6152 30 2.57915 2.25909 2.64442 0.28946 30 - -
6153 1.38629 1.38629 1.38629 1.38629
6154 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6155 31 2.53331 3.02441 0.20344 2.88069 31 - -
6156 1.38629 1.38629 1.38629 1.38629
6157 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6158 32 2.81865 0.23582 2.88868 2.35662 32 - -
6159 1.38629 1.38629 1.38629 1.38629
6160 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6161 33 2.53331 3.02441 0.20344 2.88069 33 - -
6162 1.38629 1.38629 1.38629 1.38629
6163 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6164 34 2.57915 2.25909 2.64442 0.28946 34 - -
6165 1.38629 1.38629 1.38629 1.38629
6166 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6167 35 2.57915 2.25909 2.64442 0.28946 35 - -
6168 1.38629 1.38629 1.38629 1.38629
6169 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6170 36 2.53331 3.02441 0.20344 2.88069 36 - -
6171 1.38629 1.38629 1.38629 1.38629
6172 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6173 37 2.53331 3.02441 0.20344 2.88069 37 - -
6174 1.38629 1.38629 1.38629 1.38629
6175 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6176 38 2.57915 2.25909 2.64442 0.28946 38 - -
6177 1.38629 1.38629 1.38629 1.38629
6178 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6179 39 2.53331 3.02441 0.20344 2.88069 39 - -
6180 1.38629 1.38629 1.38629 1.38629
6181 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6182 40 2.57915 2.25909 2.64442 0.28946 40 - -
6183 1.38629 1.38629 1.38629 1.38629
6184 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6185 41 2.81865 0.23582 2.88868 2.35662 41 - -
6186 1.38629 1.38629 1.38629 1.38629
6187 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6188 42 2.57915 2.25909 2.64442 0.28946 42 - -
6189 1.38629 1.38629 1.38629 1.38629
6190 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6191 43 2.53331 3.02441 0.20344 2.88069 43 - -
6192 1.38629 1.38629 1.38629 1.38629
6193 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6194 44 2.57915 2.25909 2.64442 0.28946 44 - -
6195 1.38629 1.38629 1.38629 1.38629
6196 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6197 45 0.92825 2.28391 0.95698 2.13014 45 - -
6198 1.38629 1.38629 1.38629 1.38629
6199 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
6200 //
6201 HMMER3/b [3.0 | March 2010]
6202 NAME 3_End_Alveolata_58S_end_twelvea_long
6203 LENG 45
6204 ALPH DNA
6205 RF no
6206 CS no
6207 MAP yes
6208 DATE Wed Feb 29 22:49:56 2012
6209 NSEQ 6
6210 EFFN 3.606445
6211 CKSUM 1425331606
6212 STATS LOCAL MSV -7.6440 0.71933
6213 STATS LOCAL VITERBI -7.7492 0.71933
6214 STATS LOCAL FORWARD -4.2833 0.71933
6215 HMM A C G T
6216 m->m m->i m->d i->m i->i d->m d->d
6217 COMPO 1.27087 1.33665 1.80281 1.23151
6218 1.38629 1.38629 1.38629 1.38629
6219 0.03505 4.06155 4.06155 1.46634 0.26236 0.00000 *
6220 1 3.17699 2.65124 3.22173 0.16506 1 - -
6221 1.38629 1.38629 1.38629 1.38629
6222 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6223 2 3.00708 3.67496 0.10805 3.58886 2 - -
6224 1.38629 1.38629 1.38629 1.38629
6225 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6226 3 0.13096 3.46696 2.85796 3.37696 3 - -
6227 1.38629 1.38629 1.38629 1.38629
6228 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6229 4 0.13096 3.46696 2.85796 3.37696 4 - -
6230 1.38629 1.38629 1.38629 1.38629
6231 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6232 5 3.53270 0.11893 3.57783 2.90095 5 - -
6233 1.38629 1.38629 1.38629 1.38629
6234 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6235 6 3.00708 3.67496 0.10805 3.58886 6 - -
6236 1.38629 1.38629 1.38629 1.38629
6237 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6238 7 3.17699 2.65124 3.22173 0.16506 7 - -
6239 1.38629 1.38629 1.38629 1.38629
6240 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6241 8 0.13096 3.46696 2.85796 3.37696 8 - -
6242 1.38629 1.38629 1.38629 1.38629
6243 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6244 9 0.13096 3.46696 2.85796 3.37696 9 - -
6245 1.38629 1.38629 1.38629 1.38629
6246 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6247 10 3.53270 0.11893 3.57783 2.90095 10 - -
6248 1.38629 1.38629 1.38629 1.38629
6249 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6250 11 3.53270 0.11893 3.57783 2.90095 11 - -
6251 1.38629 1.38629 1.38629 1.38629
6252 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6253 12 0.13096 3.46696 2.85796 3.37696 12 - -
6254 1.38629 1.38629 1.38629 1.38629
6255 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6256 13 0.13096 3.46696 2.85796 3.37696 13 - -
6257 1.38629 1.38629 1.38629 1.38629
6258 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6259 14 3.53270 0.11893 3.57783 2.90095 14 - -
6260 1.38629 1.38629 1.38629 1.38629
6261 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6262 15 0.13096 3.46696 2.85796 3.37696 15 - -
6263 1.38629 1.38629 1.38629 1.38629
6264 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6265 16 3.53270 0.11893 3.57783 2.90095 16 - -
6266 1.38629 1.38629 1.38629 1.38629
6267 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6268 17 0.13096 3.46696 2.85796 3.37696 17 - -
6269 1.38629 1.38629 1.38629 1.38629
6270 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6271 18 3.53270 0.11893 3.57783 2.90095 18 - -
6272 1.38629 1.38629 1.38629 1.38629
6273 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6274 19 3.17699 2.65124 3.22173 0.16506 19 - -
6275 1.38629 1.38629 1.38629 1.38629
6276 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6277 20 2.45695 0.96987 2.52827 0.78664 20 - -
6278 1.38629 1.38629 1.38629 1.38629
6279 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6280 21 3.17699 2.65124 3.22173 0.16506 21 - -
6281 1.38629 1.38629 1.38629 1.38629
6282 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6283 22 3.17699 2.65124 3.22173 0.16506 22 - -
6284 1.38629 1.38629 1.38629 1.38629
6285 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6286 23 3.17699 2.65124 3.22173 0.16506 23 - -
6287 1.38629 1.38629 1.38629 1.38629
6288 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6289 24 3.00708 3.67496 0.10805 3.58886 24 - -
6290 1.38629 1.38629 1.38629 1.38629
6291 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6292 25 3.17699 2.65124 3.22173 0.16506 25 - -
6293 1.38629 1.38629 1.38629 1.38629
6294 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6295 26 0.13096 3.46696 2.85796 3.37696 26 - -
6296 1.38629 1.38629 1.38629 1.38629
6297 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6298 27 3.53270 0.11893 3.57783 2.90095 27 - -
6299 1.38629 1.38629 1.38629 1.38629
6300 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6301 28 3.00708 3.67496 0.10805 3.58886 28 - -
6302 1.38629 1.38629 1.38629 1.38629
6303 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6304 29 3.17699 2.65124 3.22173 0.16506 29 - -
6305 1.38629 1.38629 1.38629 1.38629
6306 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6307 30 3.53270 0.11893 3.57783 2.90095 30 - -
6308 1.38629 1.38629 1.38629 1.38629
6309 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6310 31 3.53270 0.11893 3.57783 2.90095 31 - -
6311 1.38629 1.38629 1.38629 1.38629
6312 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6313 32 0.13096 3.46696 2.85796 3.37696 32 - -
6314 1.38629 1.38629 1.38629 1.38629
6315 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6316 33 3.17699 2.65124 3.22173 0.16506 33 - -
6317 1.38629 1.38629 1.38629 1.38629
6318 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6319 34 3.53270 0.11893 3.57783 2.90095 34 - -
6320 1.38629 1.38629 1.38629 1.38629
6321 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6322 35 3.17699 2.65124 3.22173 0.16506 35 - -
6323 1.38629 1.38629 1.38629 1.38629
6324 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6325 36 3.53270 0.11893 3.57783 2.90095 36 - -
6326 1.38629 1.38629 1.38629 1.38629
6327 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6328 37 0.13096 3.46696 2.85796 3.37696 37 - -
6329 1.38629 1.38629 1.38629 1.38629
6330 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6331 38 3.00708 3.67496 0.10805 3.58886 38 - -
6332 1.38629 1.38629 1.38629 1.38629
6333 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6334 39 3.17699 2.65124 3.22173 0.16506 39 - -
6335 1.38629 1.38629 1.38629 1.38629
6336 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6337 40 3.00708 3.67496 0.10805 3.58886 40 - -
6338 1.38629 1.38629 1.38629 1.38629
6339 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6340 41 0.13096 3.46696 2.85796 3.37696 41 - -
6341 1.38629 1.38629 1.38629 1.38629
6342 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6343 42 0.13096 3.46696 2.85796 3.37696 42 - -
6344 1.38629 1.38629 1.38629 1.38629
6345 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6346 43 3.17699 2.65124 3.22173 0.16506 43 - -
6347 1.38629 1.38629 1.38629 1.38629
6348 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6349 44 2.78284 1.79931 2.84298 0.33621 44 - -
6350 1.38629 1.38629 1.38629 1.38629
6351 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547
6352 45 2.78284 1.79931 2.84298 0.33621 45 - -
6353 1.38629 1.38629 1.38629 1.38629
6354 0.01768 4.04418 * 1.46634 0.26236 0.00000 *
6355 //
6356 HMMER3/b [3.0 | March 2010]
6357 NAME 3_End_Alveolata_58S_end_twelveb_long
6358 LENG 45
6359 ALPH DNA
6360 RF no
6361 CS no
6362 MAP yes
6363 DATE Wed Feb 29 22:50:00 2012
6364 NSEQ 4
6365 EFFN 3.613281
6366 CKSUM 327718252
6367 STATS LOCAL MSV -7.7152 0.71933
6368 STATS LOCAL VITERBI -7.8787 0.71933
6369 STATS LOCAL FORWARD -4.2409 0.71933
6370 HMM A C G T
6371 m->m m->i m->d i->m i->i d->m d->d
6372 COMPO 1.22953 1.30344 1.79734 1.30847
6373 1.38629 1.38629 1.38629 1.38629
6374 0.03501 4.06273 4.06273 1.46634 0.26236 0.00000 *
6375 1 3.53498 0.11869 3.58001 2.90259 1 - -
6376 1.38629 1.38629 1.38629 1.38629
6377 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6378 2 3.17904 2.65254 3.22370 0.16476 2 - -
6379 1.38629 1.38629 1.38629 1.38629
6380 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6381 3 3.00842 3.67695 0.10785 3.59106 3 - -
6382 1.38629 1.38629 1.38629 1.38629
6383 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6384 4 0.13072 3.46895 2.85924 3.37914 4 - -
6385 1.38629 1.38629 1.38629 1.38629
6386 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6387 5 0.13072 3.46895 2.85924 3.37914 5 - -
6388 1.38629 1.38629 1.38629 1.38629
6389 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6390 6 3.53498 0.11869 3.58001 2.90259 6 - -
6391 1.38629 1.38629 1.38629 1.38629
6392 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6393 7 3.00842 3.67695 0.10785 3.59106 7 - -
6394 1.38629 1.38629 1.38629 1.38629
6395 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6396 8 3.17904 2.65254 3.22370 0.16476 8 - -
6397 1.38629 1.38629 1.38629 1.38629
6398 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6399 9 0.13072 3.46895 2.85924 3.37914 9 - -
6400 1.38629 1.38629 1.38629 1.38629
6401 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6402 10 0.13072 3.46895 2.85924 3.37914 10 - -
6403 1.38629 1.38629 1.38629 1.38629
6404 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6405 11 3.53498 0.11869 3.58001 2.90259 11 - -
6406 1.38629 1.38629 1.38629 1.38629
6407 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6408 12 3.53498 0.11869 3.58001 2.90259 12 - -
6409 1.38629 1.38629 1.38629 1.38629
6410 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6411 13 0.13072 3.46895 2.85924 3.37914 13 - -
6412 1.38629 1.38629 1.38629 1.38629
6413 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6414 14 0.13072 3.46895 2.85924 3.37914 14 - -
6415 1.38629 1.38629 1.38629 1.38629
6416 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6417 15 3.53498 0.11869 3.58001 2.90259 15 - -
6418 1.38629 1.38629 1.38629 1.38629
6419 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6420 16 0.13072 3.46895 2.85924 3.37914 16 - -
6421 1.38629 1.38629 1.38629 1.38629
6422 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6423 17 3.53498 0.11869 3.58001 2.90259 17 - -
6424 1.38629 1.38629 1.38629 1.38629
6425 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6426 18 0.13072 3.46895 2.85924 3.37914 18 - -
6427 1.38629 1.38629 1.38629 1.38629
6428 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6429 19 3.53498 0.11869 3.58001 2.90259 19 - -
6430 1.38629 1.38629 1.38629 1.38629
6431 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6432 20 3.17904 2.65254 3.22370 0.16476 20 - -
6433 1.38629 1.38629 1.38629 1.38629
6434 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6435 21 0.96412 2.17979 2.19640 0.93035 21 - -
6436 1.38629 1.38629 1.38629 1.38629
6437 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6438 22 0.96412 2.17979 2.19640 0.93035 22 - -
6439 1.38629 1.38629 1.38629 1.38629
6440 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6441 23 3.17904 2.65254 3.22370 0.16476 23 - -
6442 1.38629 1.38629 1.38629 1.38629
6443 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6444 24 3.00842 3.67695 0.10785 3.59106 24 - -
6445 1.38629 1.38629 1.38629 1.38629
6446 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6447 25 3.17904 2.65254 3.22370 0.16476 25 - -
6448 1.38629 1.38629 1.38629 1.38629
6449 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6450 26 0.13072 3.46895 2.85924 3.37914 26 - -
6451 1.38629 1.38629 1.38629 1.38629
6452 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6453 27 3.53498 0.11869 3.58001 2.90259 27 - -
6454 1.38629 1.38629 1.38629 1.38629
6455 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6456 28 3.00842 3.67695 0.10785 3.59106 28 - -
6457 1.38629 1.38629 1.38629 1.38629
6458 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6459 29 3.17904 2.65254 3.22370 0.16476 29 - -
6460 1.38629 1.38629 1.38629 1.38629
6461 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6462 30 3.53498 0.11869 3.58001 2.90259 30 - -
6463 1.38629 1.38629 1.38629 1.38629
6464 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6465 31 3.53498 0.11869 3.58001 2.90259 31 - -
6466 1.38629 1.38629 1.38629 1.38629
6467 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6468 32 0.13072 3.46895 2.85924 3.37914 32 - -
6469 1.38629 1.38629 1.38629 1.38629
6470 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6471 33 3.17904 2.65254 3.22370 0.16476 33 - -
6472 1.38629 1.38629 1.38629 1.38629
6473 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6474 34 3.53498 0.11869 3.58001 2.90259 34 - -
6475 1.38629 1.38629 1.38629 1.38629
6476 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6477 35 3.17904 2.65254 3.22370 0.16476 35 - -
6478 1.38629 1.38629 1.38629 1.38629
6479 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6480 36 3.53498 0.11869 3.58001 2.90259 36 - -
6481 1.38629 1.38629 1.38629 1.38629
6482 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6483 37 0.13072 3.46895 2.85924 3.37914 37 - -
6484 1.38629 1.38629 1.38629 1.38629
6485 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6486 38 3.00842 3.67695 0.10785 3.59106 38 - -
6487 1.38629 1.38629 1.38629 1.38629
6488 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6489 39 3.17904 2.65254 3.22370 0.16476 39 - -
6490 1.38629 1.38629 1.38629 1.38629
6491 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6492 40 3.00842 3.67695 0.10785 3.59106 40 - -
6493 1.38629 1.38629 1.38629 1.38629
6494 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6495 41 0.13072 3.46895 2.85924 3.37914 41 - -
6496 1.38629 1.38629 1.38629 1.38629
6497 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6498 42 0.13072 3.46895 2.85924 3.37914 42 - -
6499 1.38629 1.38629 1.38629 1.38629
6500 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6501 43 3.17904 2.65254 3.22370 0.16476 43 - -
6502 1.38629 1.38629 1.38629 1.38629
6503 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6504 44 3.17904 2.65254 3.22370 0.16476 44 - -
6505 1.38629 1.38629 1.38629 1.38629
6506 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547
6507 45 3.17904 2.65254 3.22370 0.16476 45 - -
6508 1.38629 1.38629 1.38629 1.38629
6509 0.01766 4.04538 * 1.46634 0.26236 0.00000 *
6510 //
6511 HMMER3/b [3.0 | March 2010]
6512 NAME 3_End_Alveolata_58S_end_twelvec_long
6513 LENG 45
6514 ALPH DNA
6515 RF no
6516 CS no
6517 MAP yes
6518 DATE Wed Feb 29 22:50:07 2012
6519 NSEQ 12
6520 EFFN 3.870117
6521 CKSUM 3267954346
6522 STATS LOCAL MSV -7.1098 0.71933
6523 STATS LOCAL VITERBI -7.7778 0.71933
6524 STATS LOCAL FORWARD -4.1940 0.71933
6525 HMM A C G T
6526 m->m m->i m->d i->m i->i d->m d->d
6527 COMPO 1.25985 1.20243 1.78234 1.39595
6528 1.38629 1.38629 1.38629 1.38629
6529 0.03350 4.10596 4.10596 1.46634 0.26236 0.00000 *
6530 1 3.61664 0.11030 3.65797 2.96085 1 - -
6531 1.38629 1.38629 1.38629 1.38629
6532 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6533 2 3.25346 2.69972 3.29520 0.15423 2 - -
6534 1.38629 1.38629 1.38629 1.38629
6535 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6536 3 3.05634 3.74778 0.10105 3.66961 3 - -
6537 1.38629 1.38629 1.38629 1.38629
6538 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6539 4 0.12243 3.54056 2.90525 3.45780 4 - -
6540 1.38629 1.38629 1.38629 1.38629
6541 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6542 5 0.12243 3.54056 2.90525 3.45780 5 - -
6543 1.38629 1.38629 1.38629 1.38629
6544 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6545 6 3.61664 0.11030 3.65797 2.96085 6 - -
6546 1.38629 1.38629 1.38629 1.38629
6547 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6548 7 3.05634 3.74778 0.10105 3.66961 7 - -
6549 1.38629 1.38629 1.38629 1.38629
6550 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6551 8 3.25346 2.69972 3.29520 0.15423 8 - -
6552 1.38629 1.38629 1.38629 1.38629
6553 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6554 9 0.12243 3.54056 2.90525 3.45780 9 - -
6555 1.38629 1.38629 1.38629 1.38629
6556 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6557 10 0.12243 3.54056 2.90525 3.45780 10 - -
6558 1.38629 1.38629 1.38629 1.38629
6559 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6560 11 3.61664 0.11030 3.65797 2.96085 11 - -
6561 1.38629 1.38629 1.38629 1.38629
6562 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6563 12 3.61664 0.11030 3.65797 2.96085 12 - -
6564 1.38629 1.38629 1.38629 1.38629
6565 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6566 13 0.12243 3.54056 2.90525 3.45780 13 - -
6567 1.38629 1.38629 1.38629 1.38629
6568 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6569 14 0.12243 3.54056 2.90525 3.45780 14 - -
6570 1.38629 1.38629 1.38629 1.38629
6571 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6572 15 3.61664 0.11030 3.65797 2.96085 15 - -
6573 1.38629 1.38629 1.38629 1.38629
6574 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6575 16 0.12243 3.54056 2.90525 3.45780 16 - -
6576 1.38629 1.38629 1.38629 1.38629
6577 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6578 17 3.61664 0.11030 3.65797 2.96085 17 - -
6579 1.38629 1.38629 1.38629 1.38629
6580 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6581 18 0.12243 3.54056 2.90525 3.45780 18 - -
6582 1.38629 1.38629 1.38629 1.38629
6583 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6584 19 3.61664 0.11030 3.65797 2.96085 19 - -
6585 1.38629 1.38629 1.38629 1.38629
6586 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6587 20 2.26557 2.24150 1.36887 0.62448 20 - -
6588 1.38629 1.38629 1.38629 1.38629
6589 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6590 21 3.61664 0.11030 3.65797 2.96085 21 - -
6591 1.38629 1.38629 1.38629 1.38629
6592 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6593 22 3.25346 2.69972 3.29520 0.15423 22 - -
6594 1.38629 1.38629 1.38629 1.38629
6595 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6596 23 3.25346 2.69972 3.29520 0.15423 23 - -
6597 1.38629 1.38629 1.38629 1.38629
6598 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6599 24 3.05634 3.74778 0.10105 3.66961 24 - -
6600 1.38629 1.38629 1.38629 1.38629
6601 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6602 25 3.25346 2.69972 3.29520 0.15423 25 - -
6603 1.38629 1.38629 1.38629 1.38629
6604 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6605 26 0.12243 3.54056 2.90525 3.45780 26 - -
6606 1.38629 1.38629 1.38629 1.38629
6607 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6608 27 3.61664 0.11030 3.65797 2.96085 27 - -
6609 1.38629 1.38629 1.38629 1.38629
6610 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6611 28 3.05634 3.74778 0.10105 3.66961 28 - -
6612 1.38629 1.38629 1.38629 1.38629
6613 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6614 29 2.26012 2.49659 2.82398 0.28246 29 - -
6615 1.38629 1.38629 1.38629 1.38629
6616 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6617 30 3.61664 0.11030 3.65797 2.96085 30 - -
6618 1.38629 1.38629 1.38629 1.38629
6619 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6620 31 3.61664 0.11030 3.65797 2.96085 31 - -
6621 1.38629 1.38629 1.38629 1.38629
6622 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6623 32 0.12243 3.54056 2.90525 3.45780 32 - -
6624 1.38629 1.38629 1.38629 1.38629
6625 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6626 33 3.25346 2.69972 3.29520 0.15423 33 - -
6627 1.38629 1.38629 1.38629 1.38629
6628 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6629 34 2.77036 0.40521 2.83796 1.55128 34 - -
6630 1.38629 1.38629 1.38629 1.38629
6631 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6632 35 3.25346 2.69972 3.29520 0.15423 35 - -
6633 1.38629 1.38629 1.38629 1.38629
6634 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6635 36 3.61664 0.11030 3.65797 2.96085 36 - -
6636 1.38629 1.38629 1.38629 1.38629
6637 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6638 37 0.12243 3.54056 2.90525 3.45780 37 - -
6639 1.38629 1.38629 1.38629 1.38629
6640 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6641 38 3.05634 3.74778 0.10105 3.66961 38 - -
6642 1.38629 1.38629 1.38629 1.38629
6643 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6644 39 3.25346 2.69972 3.29520 0.15423 39 - -
6645 1.38629 1.38629 1.38629 1.38629
6646 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6647 40 3.05634 3.74778 0.10105 3.66961 40 - -
6648 1.38629 1.38629 1.38629 1.38629
6649 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6650 41 0.12243 3.54056 2.90525 3.45780 41 - -
6651 1.38629 1.38629 1.38629 1.38629
6652 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6653 42 0.12243 3.54056 2.90525 3.45780 42 - -
6654 1.38629 1.38629 1.38629 1.38629
6655 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6656 43 3.25346 2.69972 3.29520 0.15423 43 - -
6657 1.38629 1.38629 1.38629 1.38629
6658 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6659 44 2.52094 0.74045 2.59225 1.00004 44 - -
6660 1.38629 1.38629 1.38629 1.38629
6661 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547
6662 45 2.52094 0.74045 2.59225 1.00004 45 - -
6663 1.38629 1.38629 1.38629 1.38629
6664 0.01689 4.08935 * 1.46634 0.26236 0.00000 *
6665 //
6666 HMMER3/b [3.0 | March 2010]
6667 NAME 3_End_Alveolata_58S_end_twentya_long
6668 LENG 45
6669 ALPH DNA
6670 RF no
6671 CS no
6672 MAP yes
6673 DATE Wed Feb 29 22:56:02 2012
6674 NSEQ 4
6675 EFFN 3.566406
6676 CKSUM 1107581771
6677 STATS LOCAL MSV -7.4293 0.71932
6678 STATS LOCAL VITERBI -7.8373 0.71932
6679 STATS LOCAL FORWARD -3.8028 0.71932
6680 HMM A C G T
6681 m->m m->i m->d i->m i->i d->m d->d
6682 COMPO 1.82161 1.57746 1.30423 1.02067
6683 1.38629 1.38629 1.38629 1.38629
6684 0.03530 4.05463 4.05463 1.46634 0.26236 0.00000 *
6685 1 3.51925 0.12039 3.56498 2.89129 1 - -
6686 1.38629 1.38629 1.38629 1.38629
6687 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6688 2 2.99911 3.66324 0.10922 3.57588 2 - -
6689 1.38629 1.38629 1.38629 1.38629
6690 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6691 3 3.51925 0.12039 3.56498 2.89129 3 - -
6692 1.38629 1.38629 1.38629 1.38629
6693 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6694 4 0.13239 3.45521 2.85039 3.36407 4 - -
6695 1.38629 1.38629 1.38629 1.38629
6696 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6697 5 3.51925 0.12039 3.56498 2.89129 5 - -
6698 1.38629 1.38629 1.38629 1.38629
6699 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6700 6 2.65809 1.57623 2.72240 0.41939 6 - -
6701 1.38629 1.38629 1.38629 1.38629
6702 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6703 7 3.16491 2.64359 3.21012 0.16685 7 - -
6704 1.38629 1.38629 1.38629 1.38629
6705 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6706 8 2.99911 3.66324 0.10922 3.57588 8 - -
6707 1.38629 1.38629 1.38629 1.38629
6708 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6709 9 2.99911 3.66324 0.10922 3.57588 9 - -
6710 1.38629 1.38629 1.38629 1.38629
6711 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6712 10 3.51925 0.12039 3.56498 2.89129 10 - -
6713 1.38629 1.38629 1.38629 1.38629
6714 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6715 11 2.99911 3.66324 0.10922 3.57588 11 - -
6716 1.38629 1.38629 1.38629 1.38629
6717 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6718 12 3.51925 0.12039 3.56498 2.89129 12 - -
6719 1.38629 1.38629 1.38629 1.38629
6720 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6721 13 3.16491 2.64359 3.21012 0.16685 13 - -
6722 1.38629 1.38629 1.38629 1.38629
6723 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6724 14 0.13239 3.45521 2.85039 3.36407 14 - -
6725 1.38629 1.38629 1.38629 1.38629
6726 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6727 15 2.99911 3.66324 0.10922 3.57588 15 - -
6728 1.38629 1.38629 1.38629 1.38629
6729 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6730 16 3.16491 2.64359 3.21012 0.16685 16 - -
6731 1.38629 1.38629 1.38629 1.38629
6732 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6733 17 3.16491 2.64359 3.21012 0.16685 17 - -
6734 1.38629 1.38629 1.38629 1.38629
6735 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6736 18 3.16491 2.64359 3.21012 0.16685 18 - -
6737 1.38629 1.38629 1.38629 1.38629
6738 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6739 19 0.13239 3.45521 2.85039 3.36407 19 - -
6740 1.38629 1.38629 1.38629 1.38629
6741 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6742 20 3.51925 0.12039 3.56498 2.89129 20 - -
6743 1.38629 1.38629 1.38629 1.38629
6744 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6745 21 3.16491 2.64359 3.21012 0.16685 21 - -
6746 1.38629 1.38629 1.38629 1.38629
6747 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6748 22 0.13239 3.45521 2.85039 3.36407 22 - -
6749 1.38629 1.38629 1.38629 1.38629
6750 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6751 23 2.99911 3.66324 0.10922 3.57588 23 - -
6752 1.38629 1.38629 1.38629 1.38629
6753 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6754 24 3.51925 0.12039 3.56498 2.89129 24 - -
6755 1.38629 1.38629 1.38629 1.38629
6756 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6757 25 0.13239 3.45521 2.85039 3.36407 25 - -
6758 1.38629 1.38629 1.38629 1.38629
6759 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6760 26 3.16491 2.64359 3.21012 0.16685 26 - -
6761 1.38629 1.38629 1.38629 1.38629
6762 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6763 27 2.99911 3.66324 0.10922 3.57588 27 - -
6764 1.38629 1.38629 1.38629 1.38629
6765 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6766 28 3.16491 2.64359 3.21012 0.16685 28 - -
6767 1.38629 1.38629 1.38629 1.38629
6768 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6769 29 3.16491 2.64359 3.21012 0.16685 29 - -
6770 1.38629 1.38629 1.38629 1.38629
6771 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6772 30 3.16491 2.64359 3.21012 0.16685 30 - -
6773 1.38629 1.38629 1.38629 1.38629
6774 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6775 31 2.99911 3.66324 0.10922 3.57588 31 - -
6776 1.38629 1.38629 1.38629 1.38629
6777 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6778 32 3.16491 2.64359 3.21012 0.16685 32 - -
6779 1.38629 1.38629 1.38629 1.38629
6780 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6781 33 3.16491 2.64359 3.21012 0.16685 33 - -
6782 1.38629 1.38629 1.38629 1.38629
6783 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6784 34 3.16491 2.64359 3.21012 0.16685 34 - -
6785 1.38629 1.38629 1.38629 1.38629
6786 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6787 35 3.51925 0.12039 3.56498 2.89129 35 - -
6788 1.38629 1.38629 1.38629 1.38629
6789 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6790 36 0.13239 3.45521 2.85039 3.36407 36 - -
6791 1.38629 1.38629 1.38629 1.38629
6792 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6793 37 2.99911 3.66324 0.10922 3.57588 37 - -
6794 1.38629 1.38629 1.38629 1.38629
6795 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6796 38 3.16491 2.64359 3.21012 0.16685 38 - -
6797 1.38629 1.38629 1.38629 1.38629
6798 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6799 39 2.99911 3.66324 0.10922 3.57588 39 - -
6800 1.38629 1.38629 1.38629 1.38629
6801 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6802 40 3.16491 2.64359 3.21012 0.16685 40 - -
6803 1.38629 1.38629 1.38629 1.38629
6804 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6805 41 2.99911 3.66324 0.10922 3.57588 41 - -
6806 1.38629 1.38629 1.38629 1.38629
6807 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6808 42 3.16491 2.64359 3.21012 0.16685 42 - -
6809 1.38629 1.38629 1.38629 1.38629
6810 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6811 43 3.16491 2.64359 3.21012 0.16685 43 - -
6812 1.38629 1.38629 1.38629 1.38629
6813 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6814 44 2.31607 2.25114 1.58918 0.52430 44 - -
6815 1.38629 1.38629 1.38629 1.38629
6816 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547
6817 45 2.99911 3.66324 0.10922 3.57588 45 - -
6818 1.38629 1.38629 1.38629 1.38629
6819 0.01781 4.03714 * 1.46634 0.26236 0.00000 *
6820 //
6821 HMMER3/b [3.0 | March 2010]
6822 NAME 3_End_Alveolata_58S_end_twentyb_long
6823 LENG 45
6824 ALPH DNA
6825 RF no
6826 CS no
6827 MAP yes
6828 DATE Wed Feb 29 22:56:09 2012
6829 NSEQ 2
6830 EFFN 2.000000
6831 CKSUM 708606259
6832 STATS LOCAL MSV -7.4772 0.72918
6833 STATS LOCAL VITERBI -8.3653 0.72918
6834 STATS LOCAL FORWARD -3.3564 0.72918
6835 HMM A C G T
6836 m->m m->i m->d i->m i->i d->m d->d
6837 COMPO 1.62240 1.63643 1.25842 1.12764
6838 1.38629 1.38629 1.38629 1.38629
6839 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
6840 1 0.23862 2.84929 2.43386 2.70756 1 - -
6841 1.38629 1.38629 1.38629 1.38629
6842 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6843 2 2.81865 0.23582 2.88868 2.35662 2 - -
6844 1.38629 1.38629 1.38629 1.38629
6845 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6846 3 2.53331 3.02441 0.20344 2.88069 3 - -
6847 1.38629 1.38629 1.38629 1.38629
6848 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6849 4 2.81865 0.23582 2.88868 2.35662 4 - -
6850 1.38629 1.38629 1.38629 1.38629
6851 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6852 5 0.23862 2.84929 2.43386 2.70756 5 - -
6853 1.38629 1.38629 1.38629 1.38629
6854 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6855 6 0.23862 2.84929 2.43386 2.70756 6 - -
6856 1.38629 1.38629 1.38629 1.38629
6857 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6858 7 2.57915 2.25909 2.64442 0.28946 7 - -
6859 1.38629 1.38629 1.38629 1.38629
6860 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6861 8 2.57915 2.25909 2.64442 0.28946 8 - -
6862 1.38629 1.38629 1.38629 1.38629
6863 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6864 9 2.53331 3.02441 0.20344 2.88069 9 - -
6865 1.38629 1.38629 1.38629 1.38629
6866 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6867 10 2.53331 3.02441 0.20344 2.88069 10 - -
6868 1.38629 1.38629 1.38629 1.38629
6869 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6870 11 2.81865 0.23582 2.88868 2.35662 11 - -
6871 1.38629 1.38629 1.38629 1.38629
6872 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6873 12 2.53331 3.02441 0.20344 2.88069 12 - -
6874 1.38629 1.38629 1.38629 1.38629
6875 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6876 13 2.81865 0.23582 2.88868 2.35662 13 - -
6877 1.38629 1.38629 1.38629 1.38629
6878 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6879 14 2.57915 2.25909 2.64442 0.28946 14 - -
6880 1.38629 1.38629 1.38629 1.38629
6881 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6882 15 0.23862 2.84929 2.43386 2.70756 15 - -
6883 1.38629 1.38629 1.38629 1.38629
6884 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6885 16 2.81865 0.23582 2.88868 2.35662 16 - -
6886 1.38629 1.38629 1.38629 1.38629
6887 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6888 17 1.03732 1.95876 1.96551 1.00928 17 - -
6889 1.38629 1.38629 1.38629 1.38629
6890 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6891 18 2.57915 2.25909 2.64442 0.28946 18 - -
6892 1.38629 1.38629 1.38629 1.38629
6893 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6894 19 2.57915 2.25909 2.64442 0.28946 19 - -
6895 1.38629 1.38629 1.38629 1.38629
6896 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6897 20 2.53331 3.02441 0.20344 2.88069 20 - -
6898 1.38629 1.38629 1.38629 1.38629
6899 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6900 21 2.57915 2.25909 2.64442 0.28946 21 - -
6901 1.38629 1.38629 1.38629 1.38629
6902 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6903 22 0.23862 2.84929 2.43386 2.70756 22 - -
6904 1.38629 1.38629 1.38629 1.38629
6905 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6906 23 2.53331 3.02441 0.20344 2.88069 23 - -
6907 1.38629 1.38629 1.38629 1.38629
6908 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6909 24 2.81865 0.23582 2.88868 2.35662 24 - -
6910 1.38629 1.38629 1.38629 1.38629
6911 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6912 25 0.23862 2.84929 2.43386 2.70756 25 - -
6913 1.38629 1.38629 1.38629 1.38629
6914 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6915 26 2.57915 2.25909 2.64442 0.28946 26 - -
6916 1.38629 1.38629 1.38629 1.38629
6917 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6918 27 2.53331 3.02441 0.20344 2.88069 27 - -
6919 1.38629 1.38629 1.38629 1.38629
6920 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6921 28 2.57915 2.25909 2.64442 0.28946 28 - -
6922 1.38629 1.38629 1.38629 1.38629
6923 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6924 29 2.57915 2.25909 2.64442 0.28946 29 - -
6925 1.38629 1.38629 1.38629 1.38629
6926 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6927 30 2.57915 2.25909 2.64442 0.28946 30 - -
6928 1.38629 1.38629 1.38629 1.38629
6929 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6930 31 2.53331 3.02441 0.20344 2.88069 31 - -
6931 1.38629 1.38629 1.38629 1.38629
6932 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6933 32 2.57915 2.25909 2.64442 0.28946 32 - -
6934 1.38629 1.38629 1.38629 1.38629
6935 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6936 33 2.57915 2.25909 2.64442 0.28946 33 - -
6937 1.38629 1.38629 1.38629 1.38629
6938 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6939 34 2.57915 2.25909 2.64442 0.28946 34 - -
6940 1.38629 1.38629 1.38629 1.38629
6941 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6942 35 2.81865 0.23582 2.88868 2.35662 35 - -
6943 1.38629 1.38629 1.38629 1.38629
6944 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6945 36 0.23862 2.84929 2.43386 2.70756 36 - -
6946 1.38629 1.38629 1.38629 1.38629
6947 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6948 37 2.53331 3.02441 0.20344 2.88069 37 - -
6949 1.38629 1.38629 1.38629 1.38629
6950 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6951 38 2.57915 2.25909 2.64442 0.28946 38 - -
6952 1.38629 1.38629 1.38629 1.38629
6953 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6954 39 2.53331 3.02441 0.20344 2.88069 39 - -
6955 1.38629 1.38629 1.38629 1.38629
6956 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6957 40 2.57915 2.25909 2.64442 0.28946 40 - -
6958 1.38629 1.38629 1.38629 1.38629
6959 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6960 41 2.53331 3.02441 0.20344 2.88069 41 - -
6961 1.38629 1.38629 1.38629 1.38629
6962 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6963 42 2.57915 2.25909 2.64442 0.28946 42 - -
6964 1.38629 1.38629 1.38629 1.38629
6965 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6966 43 2.53331 3.02441 0.20344 2.88069 43 - -
6967 1.38629 1.38629 1.38629 1.38629
6968 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6969 44 2.57915 2.25909 2.64442 0.28946 44 - -
6970 1.38629 1.38629 1.38629 1.38629
6971 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
6972 45 2.53331 3.02441 0.20344 2.88069 45 - -
6973 1.38629 1.38629 1.38629 1.38629
6974 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
6975 //
6976 HMMER3/b [3.0 | March 2010]
6977 NAME 3_End_Alveolata_58S_end_two_long
6978 LENG 45
6979 ALPH DNA
6980 RF no
6981 CS no
6982 MAP yes
6983 DATE Wed Feb 29 22:42:51 2012
6984 NSEQ 10
6985 EFFN 3.500977
6986 CKSUM 3395317246
6987 STATS LOCAL MSV -7.5727 0.71933
6988 STATS LOCAL VITERBI -7.6197 0.71933
6989 STATS LOCAL FORWARD -4.0622 0.71933
6990 HMM A C G T
6991 m->m m->i m->d i->m i->i d->m d->d
6992 COMPO 1.62863 1.30265 1.45636 1.20762
6993 1.38629 1.38629 1.38629 1.38629
6994 0.03571 4.04322 4.04322 1.46634 0.26236 0.00000 *
6995 1 3.49685 0.12286 3.54356 2.87517 1 - -
6996 1.38629 1.38629 1.38629 1.38629
6997 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
6998 2 2.98580 3.64368 0.11122 3.55423 2 - -
6999 1.38629 1.38629 1.38629 1.38629
7000 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7001 3 3.49685 0.12286 3.54356 2.87517 3 - -
7002 1.38629 1.38629 1.38629 1.38629
7003 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7004 4 3.14491 2.63090 3.19089 0.16986 4 - -
7005 1.38629 1.38629 1.38629 1.38629
7006 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7007 5 3.14491 2.63090 3.19089 0.16986 5 - -
7008 1.38629 1.38629 1.38629 1.38629
7009 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7010 6 3.14491 2.63090 3.19089 0.16986 6 - -
7011 1.38629 1.38629 1.38629 1.38629
7012 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7013 7 3.49685 0.12286 3.54356 2.87517 7 - -
7014 1.38629 1.38629 1.38629 1.38629
7015 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7016 8 2.98580 3.64368 0.11122 3.55423 8 - -
7017 1.38629 1.38629 1.38629 1.38629
7018 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7019 9 2.98580 3.64368 0.11122 3.55423 9 - -
7020 1.38629 1.38629 1.38629 1.38629
7021 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7022 10 2.98580 3.64368 0.11122 3.55423 10 - -
7023 1.38629 1.38629 1.38629 1.38629
7024 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7025 11 0.13479 3.43568 2.83780 3.34265 11 - -
7026 1.38629 1.38629 1.38629 1.38629
7027 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7028 12 3.14491 2.63090 3.19089 0.16986 12 - -
7029 1.38629 1.38629 1.38629 1.38629
7030 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7031 13 0.13479 3.43568 2.83780 3.34265 13 - -
7032 1.38629 1.38629 1.38629 1.38629
7033 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7034 14 3.14491 2.63090 3.19089 0.16986 14 - -
7035 1.38629 1.38629 1.38629 1.38629
7036 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7037 15 3.49685 0.12286 3.54356 2.87517 15 - -
7038 1.38629 1.38629 1.38629 1.38629
7039 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7040 16 3.49685 0.12286 3.54356 2.87517 16 - -
7041 1.38629 1.38629 1.38629 1.38629
7042 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7043 17 3.49685 0.12286 3.54356 2.87517 17 - -
7044 1.38629 1.38629 1.38629 1.38629
7045 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7046 18 3.14491 2.63090 3.19089 0.16986 18 - -
7047 1.38629 1.38629 1.38629 1.38629
7048 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7049 19 2.98580 3.64368 0.11122 3.55423 19 - -
7050 1.38629 1.38629 1.38629 1.38629
7051 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7052 20 0.13479 3.43568 2.83780 3.34265 20 - -
7053 1.38629 1.38629 1.38629 1.38629
7054 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7055 21 0.13479 3.43568 2.83780 3.34265 21 - -
7056 1.38629 1.38629 1.38629 1.38629
7057 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7058 22 0.13479 3.43568 2.83780 3.34265 22 - -
7059 1.38629 1.38629 1.38629 1.38629
7060 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7061 23 2.98580 3.64368 0.11122 3.55423 23 - -
7062 1.38629 1.38629 1.38629 1.38629
7063 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7064 24 3.49685 0.12286 3.54356 2.87517 24 - -
7065 1.38629 1.38629 1.38629 1.38629
7066 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7067 25 0.13479 3.43568 2.83780 3.34265 25 - -
7068 1.38629 1.38629 1.38629 1.38629
7069 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7070 26 3.14491 2.63090 3.19089 0.16986 26 - -
7071 1.38629 1.38629 1.38629 1.38629
7072 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7073 27 2.98580 3.64368 0.11122 3.55423 27 - -
7074 1.38629 1.38629 1.38629 1.38629
7075 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7076 28 3.49685 0.12286 3.54356 2.87517 28 - -
7077 1.38629 1.38629 1.38629 1.38629
7078 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7079 29 3.49685 0.12286 3.54356 2.87517 29 - -
7080 1.38629 1.38629 1.38629 1.38629
7081 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7082 30 3.14491 2.63090 3.19089 0.16986 30 - -
7083 1.38629 1.38629 1.38629 1.38629
7084 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7085 31 2.62489 2.97458 0.24797 2.34233 31 - -
7086 1.38629 1.38629 1.38629 1.38629
7087 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7088 32 3.49685 0.12286 3.54356 2.87517 32 - -
7089 1.38629 1.38629 1.38629 1.38629
7090 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7091 33 3.14491 2.63090 3.19089 0.16986 33 - -
7092 1.38629 1.38629 1.38629 1.38629
7093 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7094 34 3.14491 2.63090 3.19089 0.16986 34 - -
7095 1.38629 1.38629 1.38629 1.38629
7096 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7097 35 3.49685 0.12286 3.54356 2.87517 35 - -
7098 1.38629 1.38629 1.38629 1.38629
7099 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7100 36 0.13479 3.43568 2.83780 3.34265 36 - -
7101 1.38629 1.38629 1.38629 1.38629
7102 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7103 37 2.98580 3.64368 0.11122 3.55423 37 - -
7104 1.38629 1.38629 1.38629 1.38629
7105 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7106 38 3.14491 2.63090 3.19089 0.16986 38 - -
7107 1.38629 1.38629 1.38629 1.38629
7108 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7109 39 2.98580 3.64368 0.11122 3.55423 39 - -
7110 1.38629 1.38629 1.38629 1.38629
7111 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7112 40 3.14491 2.63090 3.19089 0.16986 40 - -
7113 1.38629 1.38629 1.38629 1.38629
7114 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7115 41 3.49685 0.12286 3.54356 2.87517 41 - -
7116 1.38629 1.38629 1.38629 1.38629
7117 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7118 42 3.14491 2.63090 3.19089 0.16986 42 - -
7119 1.38629 1.38629 1.38629 1.38629
7120 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7121 43 0.13479 3.43568 2.83780 3.34265 43 - -
7122 1.38629 1.38629 1.38629 1.38629
7123 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7124 44 1.77036 2.10336 1.59709 0.68280 44 - -
7125 1.38629 1.38629 1.38629 1.38629
7126 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547
7127 45 3.14491 2.63090 3.19089 0.16986 45 - -
7128 1.38629 1.38629 1.38629 1.38629
7129 0.01802 4.02553 * 1.46634 0.26236 0.00000 *
7130 //
7131 HMMER3/b [3.0 | March 2010]
7132 NAME 2_5.8_Alveolata_58S_start_eighta_long
7133 LENG 45
7134 ALPH DNA
7135 RF no
7136 CS no
7137 MAP yes
7138 DATE Wed Feb 29 13:27:07 2012
7139 NSEQ 3
7140 EFFN 3.000000
7141 CKSUM 3325641686
7142 STATS LOCAL MSV -7.9406 0.72105
7143 STATS LOCAL VITERBI -7.8084 0.72105
7144 STATS LOCAL FORWARD -4.1819 0.72105
7145 HMM A C G T
7146 m->m m->i m->d i->m i->i d->m d->d
7147 COMPO 1.44871 1.52892 1.22347 1.36984
7148 1.38629 1.38629 1.38629 1.38629
7149 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
7150 1 2.86982 3.47591 0.13017 3.36931 1 - -
7151 1.38629 1.38629 1.38629 1.38629
7152 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7153 2 2.97980 2.52563 3.03204 0.19727 2 - -
7154 1.38629 1.38629 1.38629 1.38629
7155 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7156 3 2.97980 2.52563 3.03204 0.19727 3 - -
7157 1.38629 1.38629 1.38629 1.38629
7158 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7159 4 3.30705 0.14631 3.36166 2.73626 4 - -
7160 1.38629 1.38629 1.38629 1.38629
7161 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7162 5 0.15719 3.27118 2.73043 3.16274 5 - -
7163 1.38629 1.38629 1.38629 1.38629
7164 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7165 6 2.86982 3.47591 0.13017 3.36931 6 - -
7166 1.38629 1.38629 1.38629 1.38629
7167 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7168 7 2.97980 2.52563 3.03204 0.19727 7 - -
7169 1.38629 1.38629 1.38629 1.38629
7170 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7171 8 3.30705 0.14631 3.36166 2.73626 8 - -
7172 1.38629 1.38629 1.38629 1.38629
7173 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7174 9 0.15719 3.27118 2.73043 3.16274 9 - -
7175 1.38629 1.38629 1.38629 1.38629
7176 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7177 10 2.86982 3.47591 0.13017 3.36931 10 - -
7178 1.38629 1.38629 1.38629 1.38629
7179 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7180 11 3.30705 0.14631 3.36166 2.73626 11 - -
7181 1.38629 1.38629 1.38629 1.38629
7182 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7183 12 0.15719 3.27118 2.73043 3.16274 12 - -
7184 1.38629 1.38629 1.38629 1.38629
7185 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7186 13 3.30705 0.14631 3.36166 2.73626 13 - -
7187 1.38629 1.38629 1.38629 1.38629
7188 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7189 14 2.97980 2.52563 3.03204 0.19727 14 - -
7190 1.38629 1.38629 1.38629 1.38629
7191 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7192 15 2.86982 3.47591 0.13017 3.36931 15 - -
7193 1.38629 1.38629 1.38629 1.38629
7194 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7195 16 2.86982 3.47591 0.13017 3.36931 16 - -
7196 1.38629 1.38629 1.38629 1.38629
7197 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7198 17 0.15719 3.27118 2.73043 3.16274 17 - -
7199 1.38629 1.38629 1.38629 1.38629
7200 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7201 18 2.97980 2.52563 3.03204 0.19727 18 - -
7202 1.38629 1.38629 1.38629 1.38629
7203 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7204 19 2.86982 3.47591 0.13017 3.36931 19 - -
7205 1.38629 1.38629 1.38629 1.38629
7206 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7207 20 2.97980 2.52563 3.03204 0.19727 20 - -
7208 1.38629 1.38629 1.38629 1.38629
7209 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7210 21 2.97980 2.52563 3.03204 0.19727 21 - -
7211 1.38629 1.38629 1.38629 1.38629
7212 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7213 22 2.97980 2.52563 3.03204 0.19727 22 - -
7214 1.38629 1.38629 1.38629 1.38629
7215 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7216 23 2.97980 2.52563 3.03204 0.19727 23 - -
7217 1.38629 1.38629 1.38629 1.38629
7218 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7219 24 2.86982 3.47591 0.13017 3.36931 24 - -
7220 1.38629 1.38629 1.38629 1.38629
7221 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7222 25 2.86982 3.47591 0.13017 3.36931 25 - -
7223 1.38629 1.38629 1.38629 1.38629
7224 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7225 26 3.30705 0.14631 3.36166 2.73626 26 - -
7226 1.38629 1.38629 1.38629 1.38629
7227 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7228 27 3.30705 0.14631 3.36166 2.73626 27 - -
7229 1.38629 1.38629 1.38629 1.38629
7230 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7231 28 3.30705 0.14631 3.36166 2.73626 28 - -
7232 1.38629 1.38629 1.38629 1.38629
7233 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7234 29 0.15719 3.27118 2.73043 3.16274 29 - -
7235 1.38629 1.38629 1.38629 1.38629
7236 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7237 30 2.86982 3.47591 0.13017 3.36931 30 - -
7238 1.38629 1.38629 1.38629 1.38629
7239 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7240 31 3.30705 0.14631 3.36166 2.73626 31 - -
7241 1.38629 1.38629 1.38629 1.38629
7242 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7243 32 2.97980 2.52563 3.03204 0.19727 32 - -
7244 1.38629 1.38629 1.38629 1.38629
7245 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7246 33 2.86982 3.47591 0.13017 3.36931 33 - -
7247 1.38629 1.38629 1.38629 1.38629
7248 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7249 34 0.15719 3.27118 2.73043 3.16274 34 - -
7250 1.38629 1.38629 1.38629 1.38629
7251 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7252 35 3.30705 0.14631 3.36166 2.73626 35 - -
7253 1.38629 1.38629 1.38629 1.38629
7254 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7255 36 0.54754 2.55777 1.36722 2.41535 36 - -
7256 1.38629 1.38629 1.38629 1.38629
7257 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7258 37 0.15719 3.27118 2.73043 3.16274 37 - -
7259 1.38629 1.38629 1.38629 1.38629
7260 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7261 38 2.97980 2.52563 3.03204 0.19727 38 - -
7262 1.38629 1.38629 1.38629 1.38629
7263 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7264 39 2.86982 3.47591 0.13017 3.36931 39 - -
7265 1.38629 1.38629 1.38629 1.38629
7266 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7267 40 0.15719 3.27118 2.73043 3.16274 40 - -
7268 1.38629 1.38629 1.38629 1.38629
7269 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7270 41 0.15719 3.27118 2.73043 3.16274 41 - -
7271 1.38629 1.38629 1.38629 1.38629
7272 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7273 42 2.86982 3.47591 0.13017 3.36931 42 - -
7274 1.38629 1.38629 1.38629 1.38629
7275 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7276 43 0.54754 2.55777 1.36722 2.41535 43 - -
7277 1.38629 1.38629 1.38629 1.38629
7278 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7279 44 2.86982 3.47591 0.13017 3.36931 44 - -
7280 1.38629 1.38629 1.38629 1.38629
7281 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
7282 45 2.97980 2.52563 3.03204 0.19727 45 - -
7283 1.38629 1.38629 1.38629 1.38629
7284 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
7285 //
7286 HMMER3/b [3.0 | March 2010]
7287 NAME 2_5.8_Alveolata_58S_start_eightb_long
7288 LENG 45
7289 ALPH DNA
7290 RF no
7291 CS no
7292 MAP yes
7293 DATE Wed Feb 29 13:27:12 2012
7294 NSEQ 2
7295 EFFN 2.000000
7296 CKSUM 3604720587
7297 STATS LOCAL MSV -7.3490 0.72800
7298 STATS LOCAL VITERBI -8.3720 0.72800
7299 STATS LOCAL FORWARD -3.6028 0.72800
7300 HMM A C G T
7301 m->m m->i m->d i->m i->i d->m d->d
7302 COMPO 1.39767 1.46026 1.31436 1.37831
7303 1.38629 1.38629 1.38629 1.38629
7304 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
7305 1 2.53331 3.02441 0.20344 2.88069 1 - -
7306 1.38629 1.38629 1.38629 1.38629
7307 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7308 2 2.57915 2.25909 2.64442 0.28946 2 - -
7309 1.38629 1.38629 1.38629 1.38629
7310 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7311 3 2.57915 2.25909 2.64442 0.28946 3 - -
7312 1.38629 1.38629 1.38629 1.38629
7313 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7314 4 2.81865 0.23582 2.88868 2.35662 4 - -
7315 1.38629 1.38629 1.38629 1.38629
7316 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7317 5 0.23862 2.84929 2.43386 2.70756 5 - -
7318 1.38629 1.38629 1.38629 1.38629
7319 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7320 6 2.53331 3.02441 0.20344 2.88069 6 - -
7321 1.38629 1.38629 1.38629 1.38629
7322 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7323 7 2.57915 2.25909 2.64442 0.28946 7 - -
7324 1.38629 1.38629 1.38629 1.38629
7325 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7326 8 2.81865 0.23582 2.88868 2.35662 8 - -
7327 1.38629 1.38629 1.38629 1.38629
7328 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7329 9 0.23862 2.84929 2.43386 2.70756 9 - -
7330 1.38629 1.38629 1.38629 1.38629
7331 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7332 10 2.53331 3.02441 0.20344 2.88069 10 - -
7333 1.38629 1.38629 1.38629 1.38629
7334 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7335 11 2.81865 0.23582 2.88868 2.35662 11 - -
7336 1.38629 1.38629 1.38629 1.38629
7337 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7338 12 0.23862 2.84929 2.43386 2.70756 12 - -
7339 1.38629 1.38629 1.38629 1.38629
7340 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7341 13 2.81865 0.23582 2.88868 2.35662 13 - -
7342 1.38629 1.38629 1.38629 1.38629
7343 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7344 14 2.57915 2.25909 2.64442 0.28946 14 - -
7345 1.38629 1.38629 1.38629 1.38629
7346 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7347 15 2.53331 3.02441 0.20344 2.88069 15 - -
7348 1.38629 1.38629 1.38629 1.38629
7349 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7350 16 2.53331 3.02441 0.20344 2.88069 16 - -
7351 1.38629 1.38629 1.38629 1.38629
7352 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7353 17 2.81865 0.23582 2.88868 2.35662 17 - -
7354 1.38629 1.38629 1.38629 1.38629
7355 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7356 18 2.57915 2.25909 2.64442 0.28946 18 - -
7357 1.38629 1.38629 1.38629 1.38629
7358 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7359 19 2.53331 3.02441 0.20344 2.88069 19 - -
7360 1.38629 1.38629 1.38629 1.38629
7361 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7362 20 2.81865 0.23582 2.88868 2.35662 20 - -
7363 1.38629 1.38629 1.38629 1.38629
7364 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7365 21 2.57915 2.25909 2.64442 0.28946 21 - -
7366 1.38629 1.38629 1.38629 1.38629
7367 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7368 22 2.57915 2.25909 2.64442 0.28946 22 - -
7369 1.38629 1.38629 1.38629 1.38629
7370 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7371 23 2.57915 2.25909 2.64442 0.28946 23 - -
7372 1.38629 1.38629 1.38629 1.38629
7373 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7374 24 0.23862 2.84929 2.43386 2.70756 24 - -
7375 1.38629 1.38629 1.38629 1.38629
7376 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7377 25 2.53331 3.02441 0.20344 2.88069 25 - -
7378 1.38629 1.38629 1.38629 1.38629
7379 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7380 26 0.23862 2.84929 2.43386 2.70756 26 - -
7381 1.38629 1.38629 1.38629 1.38629
7382 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7383 27 2.81865 0.23582 2.88868 2.35662 27 - -
7384 1.38629 1.38629 1.38629 1.38629
7385 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7386 28 2.81865 0.23582 2.88868 2.35662 28 - -
7387 1.38629 1.38629 1.38629 1.38629
7388 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7389 29 0.23862 2.84929 2.43386 2.70756 29 - -
7390 1.38629 1.38629 1.38629 1.38629
7391 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7392 30 2.53331 3.02441 0.20344 2.88069 30 - -
7393 1.38629 1.38629 1.38629 1.38629
7394 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7395 31 2.81865 0.23582 2.88868 2.35662 31 - -
7396 1.38629 1.38629 1.38629 1.38629
7397 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7398 32 2.57915 2.25909 2.64442 0.28946 32 - -
7399 1.38629 1.38629 1.38629 1.38629
7400 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7401 33 2.53331 3.02441 0.20344 2.88069 33 - -
7402 1.38629 1.38629 1.38629 1.38629
7403 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7404 34 0.23862 2.84929 2.43386 2.70756 34 - -
7405 1.38629 1.38629 1.38629 1.38629
7406 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7407 35 2.81865 0.23582 2.88868 2.35662 35 - -
7408 1.38629 1.38629 1.38629 1.38629
7409 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7410 36 0.23862 2.84929 2.43386 2.70756 36 - -
7411 1.38629 1.38629 1.38629 1.38629
7412 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7413 37 0.23862 2.84929 2.43386 2.70756 37 - -
7414 1.38629 1.38629 1.38629 1.38629
7415 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7416 38 2.57915 2.25909 2.64442 0.28946 38 - -
7417 1.38629 1.38629 1.38629 1.38629
7418 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7419 39 2.53331 3.02441 0.20344 2.88069 39 - -
7420 1.38629 1.38629 1.38629 1.38629
7421 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7422 40 0.23862 2.84929 2.43386 2.70756 40 - -
7423 1.38629 1.38629 1.38629 1.38629
7424 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7425 41 0.23862 2.84929 2.43386 2.70756 41 - -
7426 1.38629 1.38629 1.38629 1.38629
7427 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7428 42 2.53331 3.02441 0.20344 2.88069 42 - -
7429 1.38629 1.38629 1.38629 1.38629
7430 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7431 43 2.57915 2.25909 2.64442 0.28946 43 - -
7432 1.38629 1.38629 1.38629 1.38629
7433 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7434 44 2.53331 3.02441 0.20344 2.88069 44 - -
7435 1.38629 1.38629 1.38629 1.38629
7436 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7437 45 2.57915 2.25909 2.64442 0.28946 45 - -
7438 1.38629 1.38629 1.38629 1.38629
7439 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
7440 //
7441 HMMER3/b [3.0 | March 2010]
7442 NAME 2_5.8_Alveolata_58S_start_elevena_long
7443 LENG 45
7444 ALPH DNA
7445 RF no
7446 CS no
7447 MAP yes
7448 DATE Wed Feb 29 13:27:36 2012
7449 NSEQ 32
7450 EFFN 3.675781
7451 CKSUM 3417897911
7452 STATS LOCAL MSV -7.3843 0.71933
7453 STATS LOCAL VITERBI -7.6506 0.71933
7454 STATS LOCAL FORWARD -4.0339 0.71933
7455 HMM A C G T
7456 m->m m->i m->d i->m i->i d->m d->d
7457 COMPO 1.25458 1.46041 1.35155 1.49690
7458 1.38629 1.38629 1.38629 1.38629
7459 0.03463 4.07342 4.07342 1.46634 0.26236 0.00000 *
7460 1 0.30737 2.17041 2.53008 2.64736 1 - -
7461 1.38629 1.38629 1.38629 1.38629
7462 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7463 2 0.40424 1.86056 2.41150 2.43900 2 - -
7464 1.38629 1.38629 1.38629 1.38629
7465 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7466 3 0.12858 3.48693 2.87081 3.39888 3 - -
7467 1.38629 1.38629 1.38629 1.38629
7468 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7469 4 3.55554 0.11651 3.59965 2.91731 4 - -
7470 1.38629 1.38629 1.38629 1.38629
7471 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7472 5 3.19761 2.66431 3.24155 0.16206 5 - -
7473 1.38629 1.38629 1.38629 1.38629
7474 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7475 6 2.80026 2.50234 2.42463 0.26292 6 - -
7476 1.38629 1.38629 1.38629 1.38629
7477 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7478 7 3.19761 2.66431 3.24155 0.16206 7 - -
7479 1.38629 1.38629 1.38629 1.38629
7480 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7481 8 2.86129 0.33229 2.92687 1.76049 8 - -
7482 1.38629 1.38629 1.38629 1.38629
7483 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7484 9 0.12858 3.48693 2.87081 3.39888 9 - -
7485 1.38629 1.38629 1.38629 1.38629
7486 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7487 10 3.02055 3.69484 0.10609 3.61089 10 - -
7488 1.38629 1.38629 1.38629 1.38629
7489 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7490 11 3.55554 0.11651 3.59965 2.91731 11 - -
7491 1.38629 1.38629 1.38629 1.38629
7492 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7493 12 3.02055 3.69484 0.10609 3.61089 12 - -
7494 1.38629 1.38629 1.38629 1.38629
7495 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7496 13 0.44013 2.76228 1.51098 2.62826 13 - -
7497 1.38629 1.38629 1.38629 1.38629
7498 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7499 14 3.19761 2.66431 3.24155 0.16206 14 - -
7500 1.38629 1.38629 1.38629 1.38629
7501 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7502 15 3.02055 3.69484 0.10609 3.61089 15 - -
7503 1.38629 1.38629 1.38629 1.38629
7504 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7505 16 3.02055 3.69484 0.10609 3.61089 16 - -
7506 1.38629 1.38629 1.38629 1.38629
7507 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7508 17 0.12858 3.48693 2.87081 3.39888 17 - -
7509 1.38629 1.38629 1.38629 1.38629
7510 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7511 18 3.19761 2.66431 3.24155 0.16206 18 - -
7512 1.38629 1.38629 1.38629 1.38629
7513 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7514 19 3.02055 3.69484 0.10609 3.61089 19 - -
7515 1.38629 1.38629 1.38629 1.38629
7516 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7517 20 3.19761 2.66431 3.24155 0.16206 20 - -
7518 1.38629 1.38629 1.38629 1.38629
7519 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7520 21 3.55554 0.11651 3.59965 2.91731 21 - -
7521 1.38629 1.38629 1.38629 1.38629
7522 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7523 22 3.19761 2.66431 3.24155 0.16206 22 - -
7524 1.38629 1.38629 1.38629 1.38629
7525 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7526 23 3.19761 2.66431 3.24155 0.16206 23 - -
7527 1.38629 1.38629 1.38629 1.38629
7528 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7529 24 3.02055 3.69484 0.10609 3.61089 24 - -
7530 1.38629 1.38629 1.38629 1.38629
7531 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7532 25 3.02055 3.69484 0.10609 3.61089 25 - -
7533 1.38629 1.38629 1.38629 1.38629
7534 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7535 26 3.55554 0.11651 3.59965 2.91731 26 - -
7536 1.38629 1.38629 1.38629 1.38629
7537 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7538 27 3.19761 2.66431 3.24155 0.16206 27 - -
7539 1.38629 1.38629 1.38629 1.38629
7540 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7541 28 3.55554 0.11651 3.59965 2.91731 28 - -
7542 1.38629 1.38629 1.38629 1.38629
7543 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7544 29 0.12858 3.48693 2.87081 3.39888 29 - -
7545 1.38629 1.38629 1.38629 1.38629
7546 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7547 30 3.55554 0.11651 3.59965 2.91731 30 - -
7548 1.38629 1.38629 1.38629 1.38629
7549 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7550 31 0.12858 3.48693 2.87081 3.39888 31 - -
7551 1.38629 1.38629 1.38629 1.38629
7552 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7553 32 3.55554 0.11651 3.59965 2.91731 32 - -
7554 1.38629 1.38629 1.38629 1.38629
7555 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7556 33 0.21326 3.19501 2.24953 3.08698 33 - -
7557 1.38629 1.38629 1.38629 1.38629
7558 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7559 34 0.12858 3.48693 2.87081 3.39888 34 - -
7560 1.38629 1.38629 1.38629 1.38629
7561 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7562 35 3.55554 0.11651 3.59965 2.91731 35 - -
7563 1.38629 1.38629 1.38629 1.38629
7564 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7565 36 3.02055 3.69484 0.10609 3.61089 36 - -
7566 1.38629 1.38629 1.38629 1.38629
7567 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7568 37 0.12858 3.48693 2.87081 3.39888 37 - -
7569 1.38629 1.38629 1.38629 1.38629
7570 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7571 38 3.19761 2.66431 3.24155 0.16206 38 - -
7572 1.38629 1.38629 1.38629 1.38629
7573 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7574 39 3.02055 3.69484 0.10609 3.61089 39 - -
7575 1.38629 1.38629 1.38629 1.38629
7576 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7577 40 0.12858 3.48693 2.87081 3.39888 40 - -
7578 1.38629 1.38629 1.38629 1.38629
7579 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7580 41 0.12858 3.48693 2.87081 3.39888 41 - -
7581 1.38629 1.38629 1.38629 1.38629
7582 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7583 42 3.02055 3.69484 0.10609 3.61089 42 - -
7584 1.38629 1.38629 1.38629 1.38629
7585 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7586 43 3.02055 3.69484 0.10609 3.61089 43 - -
7587 1.38629 1.38629 1.38629 1.38629
7588 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7589 44 0.12858 3.48693 2.87081 3.39888 44 - -
7590 1.38629 1.38629 1.38629 1.38629
7591 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547
7592 45 3.55554 0.11651 3.59965 2.91731 45 - -
7593 1.38629 1.38629 1.38629 1.38629
7594 0.01747 4.05626 * 1.46634 0.26236 0.00000 *
7595 //
7596 HMMER3/b [3.0 | March 2010]
7597 NAME 2_5.8_Alveolata_58S_start_elevenb_long
7598 LENG 45
7599 ALPH DNA
7600 RF no
7601 CS no
7602 MAP yes
7603 DATE Wed Feb 29 13:27:41 2012
7604 NSEQ 5
7605 EFFN 3.208008
7606 CKSUM 4067533443
7607 STATS LOCAL MSV -8.1074 0.71934
7608 STATS LOCAL VITERBI -7.6996 0.71934
7609 STATS LOCAL FORWARD -3.9608 0.71934
7610 HMM A C G T
7611 m->m m->i m->d i->m i->i d->m d->d
7612 COMPO 1.27246 1.46892 1.31219 1.51207
7613 1.38629 1.38629 1.38629 1.38629
7614 0.03768 3.99047 3.99047 1.46634 0.26236 0.00000 *
7615 1 0.14694 3.34284 2.77755 3.24098 1 - -
7616 1.38629 1.38629 1.38629 1.38629
7617 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7618 2 0.14694 3.34284 2.77755 3.24098 2 - -
7619 1.38629 1.38629 1.38629 1.38629
7620 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7621 3 0.14694 3.34284 2.77755 3.24098 3 - -
7622 1.38629 1.38629 1.38629 1.38629
7623 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7624 4 3.05099 2.57118 3.10057 0.18486 4 - -
7625 1.38629 1.38629 1.38629 1.38629
7626 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7627 5 3.05099 2.57118 3.10057 0.18486 5 - -
7628 1.38629 1.38629 1.38629 1.38629
7629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7630 6 3.05099 2.57118 3.10057 0.18486 6 - -
7631 1.38629 1.38629 1.38629 1.38629
7632 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7633 7 3.05099 2.57118 3.10057 0.18486 7 - -
7634 1.38629 1.38629 1.38629 1.38629
7635 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7636 8 3.38993 0.13548 3.44120 2.79746 8 - -
7637 1.38629 1.38629 1.38629 1.38629
7638 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7639 9 0.14694 3.34284 2.77755 3.24098 9 - -
7640 1.38629 1.38629 1.38629 1.38629
7641 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7642 10 2.92124 3.54964 0.12142 3.45039 10 - -
7643 1.38629 1.38629 1.38629 1.38629
7644 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7645 11 3.38993 0.13548 3.44120 2.79746 11 - -
7646 1.38629 1.38629 1.38629 1.38629
7647 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7648 12 2.92124 3.54964 0.12142 3.45039 12 - -
7649 1.38629 1.38629 1.38629 1.38629
7650 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7651 13 2.92124 3.54964 0.12142 3.45039 13 - -
7652 1.38629 1.38629 1.38629 1.38629
7653 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7654 14 3.05099 2.57118 3.10057 0.18486 14 - -
7655 1.38629 1.38629 1.38629 1.38629
7656 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7657 15 2.92124 3.54964 0.12142 3.45039 15 - -
7658 1.38629 1.38629 1.38629 1.38629
7659 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7660 16 2.92124 3.54964 0.12142 3.45039 16 - -
7661 1.38629 1.38629 1.38629 1.38629
7662 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7663 17 0.14694 3.34284 2.77755 3.24098 17 - -
7664 1.38629 1.38629 1.38629 1.38629
7665 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7666 18 3.05099 2.57118 3.10057 0.18486 18 - -
7667 1.38629 1.38629 1.38629 1.38629
7668 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7669 19 2.92124 3.54964 0.12142 3.45039 19 - -
7670 1.38629 1.38629 1.38629 1.38629
7671 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7672 20 3.05099 2.57118 3.10057 0.18486 20 - -
7673 1.38629 1.38629 1.38629 1.38629
7674 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7675 21 3.38993 0.13548 3.44120 2.79746 21 - -
7676 1.38629 1.38629 1.38629 1.38629
7677 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7678 22 3.05099 2.57118 3.10057 0.18486 22 - -
7679 1.38629 1.38629 1.38629 1.38629
7680 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7681 23 3.38993 0.13548 3.44120 2.79746 23 - -
7682 1.38629 1.38629 1.38629 1.38629
7683 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7684 24 2.92124 3.54964 0.12142 3.45039 24 - -
7685 1.38629 1.38629 1.38629 1.38629
7686 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7687 25 2.92124 3.54964 0.12142 3.45039 25 - -
7688 1.38629 1.38629 1.38629 1.38629
7689 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7690 26 3.38993 0.13548 3.44120 2.79746 26 - -
7691 1.38629 1.38629 1.38629 1.38629
7692 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7693 27 3.05099 2.57118 3.10057 0.18486 27 - -
7694 1.38629 1.38629 1.38629 1.38629
7695 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7696 28 3.38993 0.13548 3.44120 2.79746 28 - -
7697 1.38629 1.38629 1.38629 1.38629
7698 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7699 29 0.14694 3.34284 2.77755 3.24098 29 - -
7700 1.38629 1.38629 1.38629 1.38629
7701 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7702 30 3.38993 0.13548 3.44120 2.79746 30 - -
7703 1.38629 1.38629 1.38629 1.38629
7704 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7705 31 0.14694 3.34284 2.77755 3.24098 31 - -
7706 1.38629 1.38629 1.38629 1.38629
7707 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7708 32 3.38993 0.13548 3.44120 2.79746 32 - -
7709 1.38629 1.38629 1.38629 1.38629
7710 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7711 33 0.14694 3.34284 2.77755 3.24098 33 - -
7712 1.38629 1.38629 1.38629 1.38629
7713 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7714 34 0.14694 3.34284 2.77755 3.24098 34 - -
7715 1.38629 1.38629 1.38629 1.38629
7716 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7717 35 3.38993 0.13548 3.44120 2.79746 35 - -
7718 1.38629 1.38629 1.38629 1.38629
7719 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7720 36 2.92124 3.54964 0.12142 3.45039 36 - -
7721 1.38629 1.38629 1.38629 1.38629
7722 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7723 37 0.14694 3.34284 2.77755 3.24098 37 - -
7724 1.38629 1.38629 1.38629 1.38629
7725 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7726 38 3.05099 2.57118 3.10057 0.18486 38 - -
7727 1.38629 1.38629 1.38629 1.38629
7728 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7729 39 2.92124 3.54964 0.12142 3.45039 39 - -
7730 1.38629 1.38629 1.38629 1.38629
7731 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7732 40 0.14694 3.34284 2.77755 3.24098 40 - -
7733 1.38629 1.38629 1.38629 1.38629
7734 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7735 41 0.14694 3.34284 2.77755 3.24098 41 - -
7736 1.38629 1.38629 1.38629 1.38629
7737 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7738 42 2.92124 3.54964 0.12142 3.45039 42 - -
7739 1.38629 1.38629 1.38629 1.38629
7740 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7741 43 2.92124 3.54964 0.12142 3.45039 43 - -
7742 1.38629 1.38629 1.38629 1.38629
7743 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7744 44 0.14694 3.34284 2.77755 3.24098 44 - -
7745 1.38629 1.38629 1.38629 1.38629
7746 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547
7747 45 3.38993 0.13548 3.44120 2.79746 45 - -
7748 1.38629 1.38629 1.38629 1.38629
7749 0.01902 3.97180 * 1.46634 0.26236 0.00000 *
7750 //
7751 HMMER3/b [3.0 | March 2010]
7752 NAME 2_5.8_Alveolata_58S_start_elevenc_long
7753 LENG 45
7754 ALPH DNA
7755 RF no
7756 CS no
7757 MAP yes
7758 DATE Wed Feb 29 13:27:45 2012
7759 NSEQ 20
7760 EFFN 3.481445
7761 CKSUM 987744611
7762 STATS LOCAL MSV -7.5848 0.71932
7763 STATS LOCAL VITERBI -7.4852 0.71932
7764 STATS LOCAL FORWARD -4.0632 0.71932
7765 HMM A C G T
7766 m->m m->i m->d i->m i->i d->m d->d
7767 COMPO 1.25409 1.53980 1.40804 1.36407
7768 1.38629 1.38629 1.38629 1.38629
7769 0.03584 4.03979 4.03979 1.46634 0.26236 0.00000 *
7770 1 3.13887 2.62707 3.18509 0.17078 1 - -
7771 1.38629 1.38629 1.38629 1.38629
7772 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7773 2 0.13553 3.42977 2.83398 3.33617 2 - -
7774 1.38629 1.38629 1.38629 1.38629
7775 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7776 3 3.13887 2.62707 3.18509 0.17078 3 - -
7777 1.38629 1.38629 1.38629 1.38629
7778 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7779 4 3.49007 0.12362 3.53707 2.87028 4 - -
7780 1.38629 1.38629 1.38629 1.38629
7781 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7782 5 3.13887 2.62707 3.18509 0.17078 5 - -
7783 1.38629 1.38629 1.38629 1.38629
7784 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7785 6 3.13887 2.62707 3.18509 0.17078 6 - -
7786 1.38629 1.38629 1.38629 1.38629
7787 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7788 7 3.13887 2.62707 3.18509 0.17078 7 - -
7789 1.38629 1.38629 1.38629 1.38629
7790 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7791 8 3.49007 0.12362 3.53707 2.87028 8 - -
7792 1.38629 1.38629 1.38629 1.38629
7793 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7794 9 0.13553 3.42977 2.83398 3.33617 9 - -
7795 1.38629 1.38629 1.38629 1.38629
7796 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7797 10 2.98175 3.63775 0.11183 3.54767 10 - -
7798 1.38629 1.38629 1.38629 1.38629
7799 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7800 11 3.49007 0.12362 3.53707 2.87028 11 - -
7801 1.38629 1.38629 1.38629 1.38629
7802 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7803 12 2.98175 3.63775 0.11183 3.54767 12 - -
7804 1.38629 1.38629 1.38629 1.38629
7805 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7806 13 0.13553 3.42977 2.83398 3.33617 13 - -
7807 1.38629 1.38629 1.38629 1.38629
7808 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7809 14 3.13887 2.62707 3.18509 0.17078 14 - -
7810 1.38629 1.38629 1.38629 1.38629
7811 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7812 15 2.98175 3.63775 0.11183 3.54767 15 - -
7813 1.38629 1.38629 1.38629 1.38629
7814 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7815 16 2.98175 3.63775 0.11183 3.54767 16 - -
7816 1.38629 1.38629 1.38629 1.38629
7817 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7818 17 0.13553 3.42977 2.83398 3.33617 17 - -
7819 1.38629 1.38629 1.38629 1.38629
7820 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7821 18 3.13887 2.62707 3.18509 0.17078 18 - -
7822 1.38629 1.38629 1.38629 1.38629
7823 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7824 19 2.98175 3.63775 0.11183 3.54767 19 - -
7825 1.38629 1.38629 1.38629 1.38629
7826 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7827 20 0.98772 2.55500 0.77629 2.41045 20 - -
7828 1.38629 1.38629 1.38629 1.38629
7829 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7830 21 3.49007 0.12362 3.53707 2.87028 21 - -
7831 1.38629 1.38629 1.38629 1.38629
7832 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7833 22 3.13887 2.62707 3.18509 0.17078 22 - -
7834 1.38629 1.38629 1.38629 1.38629
7835 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7836 23 3.49007 0.12362 3.53707 2.87028 23 - -
7837 1.38629 1.38629 1.38629 1.38629
7838 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7839 24 2.98175 3.63775 0.11183 3.54767 24 - -
7840 1.38629 1.38629 1.38629 1.38629
7841 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7842 25 2.98175 3.63775 0.11183 3.54767 25 - -
7843 1.38629 1.38629 1.38629 1.38629
7844 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7845 26 0.13553 3.42977 2.83398 3.33617 26 - -
7846 1.38629 1.38629 1.38629 1.38629
7847 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7848 27 3.13887 2.62707 3.18509 0.17078 27 - -
7849 1.38629 1.38629 1.38629 1.38629
7850 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7851 28 3.49007 0.12362 3.53707 2.87028 28 - -
7852 1.38629 1.38629 1.38629 1.38629
7853 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7854 29 3.13887 2.62707 3.18509 0.17078 29 - -
7855 1.38629 1.38629 1.38629 1.38629
7856 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7857 30 3.49007 0.12362 3.53707 2.87028 30 - -
7858 1.38629 1.38629 1.38629 1.38629
7859 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7860 31 0.13553 3.42977 2.83398 3.33617 31 - -
7861 1.38629 1.38629 1.38629 1.38629
7862 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7863 32 3.13887 2.62707 3.18509 0.17078 32 - -
7864 1.38629 1.38629 1.38629 1.38629
7865 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7866 33 0.13553 3.42977 2.83398 3.33617 33 - -
7867 1.38629 1.38629 1.38629 1.38629
7868 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7869 34 0.13553 3.42977 2.83398 3.33617 34 - -
7870 1.38629 1.38629 1.38629 1.38629
7871 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7872 35 3.49007 0.12362 3.53707 2.87028 35 - -
7873 1.38629 1.38629 1.38629 1.38629
7874 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7875 36 2.98175 3.63775 0.11183 3.54767 36 - -
7876 1.38629 1.38629 1.38629 1.38629
7877 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7878 37 0.13553 3.42977 2.83398 3.33617 37 - -
7879 1.38629 1.38629 1.38629 1.38629
7880 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7881 38 3.13887 2.62707 3.18509 0.17078 38 - -
7882 1.38629 1.38629 1.38629 1.38629
7883 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7884 39 2.98175 3.63775 0.11183 3.54767 39 - -
7885 1.38629 1.38629 1.38629 1.38629
7886 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7887 40 0.13553 3.42977 2.83398 3.33617 40 - -
7888 1.38629 1.38629 1.38629 1.38629
7889 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7890 41 0.13553 3.42977 2.83398 3.33617 41 - -
7891 1.38629 1.38629 1.38629 1.38629
7892 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7893 42 2.98175 3.63775 0.11183 3.54767 42 - -
7894 1.38629 1.38629 1.38629 1.38629
7895 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7896 43 0.13553 3.42977 2.83398 3.33617 43 - -
7897 1.38629 1.38629 1.38629 1.38629
7898 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7899 44 0.22376 3.13411 2.22332 3.02203 44 - -
7900 1.38629 1.38629 1.38629 1.38629
7901 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547
7902 45 3.06247 0.19963 2.76820 2.63920 45 - -
7903 1.38629 1.38629 1.38629 1.38629
7904 0.01808 4.02203 * 1.46634 0.26236 0.00000 *
7905 //
7906 HMMER3/b [3.0 | March 2010]
7907 NAME 2_5.8_Alveolata_58S_start_five_long
7908 LENG 45
7909 ALPH DNA
7910 RF no
7911 CS no
7912 MAP yes
7913 DATE Wed Feb 29 13:26:27 2012
7914 NSEQ 2
7915 EFFN 2.000000
7916 CKSUM 3440808981
7917 STATS LOCAL MSV -7.7336 0.72845
7918 STATS LOCAL VITERBI -8.5172 0.72845
7919 STATS LOCAL FORWARD -3.3604 0.72845
7920 HMM A C G T
7921 m->m m->i m->d i->m i->i d->m d->d
7922 COMPO 1.33246 1.71713 1.20095 1.36382
7923 1.38629 1.38629 1.38629 1.38629
7924 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
7925 1 2.53331 3.02441 0.20344 2.88069 1 - -
7926 1.38629 1.38629 1.38629 1.38629
7927 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7928 2 2.81865 0.23582 2.88868 2.35662 2 - -
7929 1.38629 1.38629 1.38629 1.38629
7930 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7931 3 0.23862 2.84929 2.43386 2.70756 3 - -
7932 1.38629 1.38629 1.38629 1.38629
7933 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7934 4 2.53331 3.02441 0.20344 2.88069 4 - -
7935 1.38629 1.38629 1.38629 1.38629
7936 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7937 5 2.81865 0.23582 2.88868 2.35662 5 - -
7938 1.38629 1.38629 1.38629 1.38629
7939 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7940 6 2.57915 2.25909 2.64442 0.28946 6 - -
7941 1.38629 1.38629 1.38629 1.38629
7942 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7943 7 2.57915 2.25909 2.64442 0.28946 7 - -
7944 1.38629 1.38629 1.38629 1.38629
7945 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7946 8 2.81865 0.23582 2.88868 2.35662 8 - -
7947 1.38629 1.38629 1.38629 1.38629
7948 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7949 9 0.23862 2.84929 2.43386 2.70756 9 - -
7950 1.38629 1.38629 1.38629 1.38629
7951 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7952 10 2.53331 3.02441 0.20344 2.88069 10 - -
7953 1.38629 1.38629 1.38629 1.38629
7954 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7955 11 2.57915 2.25909 2.64442 0.28946 11 - -
7956 1.38629 1.38629 1.38629 1.38629
7957 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7958 12 2.53331 3.02441 0.20344 2.88069 12 - -
7959 1.38629 1.38629 1.38629 1.38629
7960 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7961 13 0.23862 2.84929 2.43386 2.70756 13 - -
7962 1.38629 1.38629 1.38629 1.38629
7963 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7964 14 2.57915 2.25909 2.64442 0.28946 14 - -
7965 1.38629 1.38629 1.38629 1.38629
7966 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7967 15 2.53331 3.02441 0.20344 2.88069 15 - -
7968 1.38629 1.38629 1.38629 1.38629
7969 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7970 16 2.53331 3.02441 0.20344 2.88069 16 - -
7971 1.38629 1.38629 1.38629 1.38629
7972 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7973 17 0.23862 2.84929 2.43386 2.70756 17 - -
7974 1.38629 1.38629 1.38629 1.38629
7975 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7976 18 2.57915 2.25909 2.64442 0.28946 18 - -
7977 1.38629 1.38629 1.38629 1.38629
7978 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7979 19 2.53331 3.02441 0.20344 2.88069 19 - -
7980 1.38629 1.38629 1.38629 1.38629
7981 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7982 20 2.81865 0.23582 2.88868 2.35662 20 - -
7983 1.38629 1.38629 1.38629 1.38629
7984 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7985 21 2.57915 2.25909 2.64442 0.28946 21 - -
7986 1.38629 1.38629 1.38629 1.38629
7987 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7988 22 2.57915 2.25909 2.64442 0.28946 22 - -
7989 1.38629 1.38629 1.38629 1.38629
7990 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7991 23 2.57915 2.25909 2.64442 0.28946 23 - -
7992 1.38629 1.38629 1.38629 1.38629
7993 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7994 24 2.53331 3.02441 0.20344 2.88069 24 - -
7995 1.38629 1.38629 1.38629 1.38629
7996 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
7997 25 2.53331 3.02441 0.20344 2.88069 25 - -
7998 1.38629 1.38629 1.38629 1.38629
7999 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8000 26 2.57915 2.25909 2.64442 0.28946 26 - -
8001 1.38629 1.38629 1.38629 1.38629
8002 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8003 27 2.57915 2.25909 2.64442 0.28946 27 - -
8004 1.38629 1.38629 1.38629 1.38629
8005 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8006 28 2.81865 0.23582 2.88868 2.35662 28 - -
8007 1.38629 1.38629 1.38629 1.38629
8008 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8009 29 0.23862 2.84929 2.43386 2.70756 29 - -
8010 1.38629 1.38629 1.38629 1.38629
8011 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8012 30 0.23862 2.84929 2.43386 2.70756 30 - -
8013 1.38629 1.38629 1.38629 1.38629
8014 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8015 31 0.23862 2.84929 2.43386 2.70756 31 - -
8016 1.38629 1.38629 1.38629 1.38629
8017 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8018 32 2.81865 0.23582 2.88868 2.35662 32 - -
8019 1.38629 1.38629 1.38629 1.38629
8020 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8021 33 0.23862 2.84929 2.43386 2.70756 33 - -
8022 1.38629 1.38629 1.38629 1.38629
8023 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8024 34 0.23862 2.84929 2.43386 2.70756 34 - -
8025 1.38629 1.38629 1.38629 1.38629
8026 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8027 35 2.15554 1.00938 2.23102 0.88601 35 - -
8028 1.38629 1.38629 1.38629 1.38629
8029 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8030 36 2.53331 3.02441 0.20344 2.88069 36 - -
8031 1.38629 1.38629 1.38629 1.38629
8032 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8033 37 0.23862 2.84929 2.43386 2.70756 37 - -
8034 1.38629 1.38629 1.38629 1.38629
8035 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8036 38 2.57915 2.25909 2.64442 0.28946 38 - -
8037 1.38629 1.38629 1.38629 1.38629
8038 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8039 39 2.53331 3.02441 0.20344 2.88069 39 - -
8040 1.38629 1.38629 1.38629 1.38629
8041 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8042 40 0.23862 2.84929 2.43386 2.70756 40 - -
8043 1.38629 1.38629 1.38629 1.38629
8044 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8045 41 0.23862 2.84929 2.43386 2.70756 41 - -
8046 1.38629 1.38629 1.38629 1.38629
8047 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8048 42 2.53331 3.02441 0.20344 2.88069 42 - -
8049 1.38629 1.38629 1.38629 1.38629
8050 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8051 43 2.53331 3.02441 0.20344 2.88069 43 - -
8052 1.38629 1.38629 1.38629 1.38629
8053 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8054 44 2.53331 3.02441 0.20344 2.88069 44 - -
8055 1.38629 1.38629 1.38629 1.38629
8056 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8057 45 2.57915 2.25909 2.64442 0.28946 45 - -
8058 1.38629 1.38629 1.38629 1.38629
8059 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
8060 //
8061 HMMER3/b [3.0 | March 2010]
8062 NAME 2_5.8_Alveolata_58S_start_foura_long
8063 LENG 45
8064 ALPH DNA
8065 RF no
8066 CS no
8067 MAP yes
8068 DATE Wed Feb 29 13:26:14 2012
8069 NSEQ 2
8070 EFFN 2.000000
8071 CKSUM 3441996736
8072 STATS LOCAL MSV -7.3600 0.72755
8073 STATS LOCAL VITERBI -8.3191 0.72755
8074 STATS LOCAL FORWARD -3.0189 0.72755
8075 HMM A C G T
8076 m->m m->i m->d i->m i->i d->m d->d
8077 COMPO 1.28872 1.35377 1.31697 1.61865
8078 1.38629 1.38629 1.38629 1.38629
8079 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
8080 1 2.81865 0.23582 2.88868 2.35662 1 - -
8081 1.38629 1.38629 1.38629 1.38629
8082 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8083 2 0.23862 2.84929 2.43386 2.70756 2 - -
8084 1.38629 1.38629 1.38629 1.38629
8085 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8086 3 0.23862 2.84929 2.43386 2.70756 3 - -
8087 1.38629 1.38629 1.38629 1.38629
8088 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8089 4 2.57915 2.25909 2.64442 0.28946 4 - -
8090 1.38629 1.38629 1.38629 1.38629
8091 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8092 5 2.57915 2.25909 2.64442 0.28946 5 - -
8093 1.38629 1.38629 1.38629 1.38629
8094 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8095 6 2.57915 2.25909 2.64442 0.28946 6 - -
8096 1.38629 1.38629 1.38629 1.38629
8097 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8098 7 2.57915 2.25909 2.64442 0.28946 7 - -
8099 1.38629 1.38629 1.38629 1.38629
8100 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8101 8 2.81865 0.23582 2.88868 2.35662 8 - -
8102 1.38629 1.38629 1.38629 1.38629
8103 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8104 9 0.23862 2.84929 2.43386 2.70756 9 - -
8105 1.38629 1.38629 1.38629 1.38629
8106 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8107 10 2.53331 3.02441 0.20344 2.88069 10 - -
8108 1.38629 1.38629 1.38629 1.38629
8109 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8110 11 2.81865 0.23582 2.88868 2.35662 11 - -
8111 1.38629 1.38629 1.38629 1.38629
8112 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8113 12 2.53331 3.02441 0.20344 2.88069 12 - -
8114 1.38629 1.38629 1.38629 1.38629
8115 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8116 13 0.23862 2.84929 2.43386 2.70756 13 - -
8117 1.38629 1.38629 1.38629 1.38629
8118 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8119 14 2.81865 0.23582 2.88868 2.35662 14 - -
8120 1.38629 1.38629 1.38629 1.38629
8121 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8122 15 2.53331 3.02441 0.20344 2.88069 15 - -
8123 1.38629 1.38629 1.38629 1.38629
8124 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8125 16 2.53331 3.02441 0.20344 2.88069 16 - -
8126 1.38629 1.38629 1.38629 1.38629
8127 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8128 17 0.23862 2.84929 2.43386 2.70756 17 - -
8129 1.38629 1.38629 1.38629 1.38629
8130 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8131 18 2.57915 2.25909 2.64442 0.28946 18 - -
8132 1.38629 1.38629 1.38629 1.38629
8133 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8134 19 0.23862 2.84929 2.43386 2.70756 19 - -
8135 1.38629 1.38629 1.38629 1.38629
8136 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8137 20 2.81865 0.23582 2.88868 2.35662 20 - -
8138 1.38629 1.38629 1.38629 1.38629
8139 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8140 21 2.81865 0.23582 2.88868 2.35662 21 - -
8141 1.38629 1.38629 1.38629 1.38629
8142 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8143 22 2.57915 2.25909 2.64442 0.28946 22 - -
8144 1.38629 1.38629 1.38629 1.38629
8145 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8146 23 2.81865 0.23582 2.88868 2.35662 23 - -
8147 1.38629 1.38629 1.38629 1.38629
8148 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8149 24 2.53331 3.02441 0.20344 2.88069 24 - -
8150 1.38629 1.38629 1.38629 1.38629
8151 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8152 25 2.53331 3.02441 0.20344 2.88069 25 - -
8153 1.38629 1.38629 1.38629 1.38629
8154 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8155 26 2.81865 0.23582 2.88868 2.35662 26 - -
8156 1.38629 1.38629 1.38629 1.38629
8157 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8158 27 2.57915 2.25909 2.64442 0.28946 27 - -
8159 1.38629 1.38629 1.38629 1.38629
8160 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8161 28 2.81865 0.23582 2.88868 2.35662 28 - -
8162 1.38629 1.38629 1.38629 1.38629
8163 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8164 29 0.23862 2.84929 2.43386 2.70756 29 - -
8165 1.38629 1.38629 1.38629 1.38629
8166 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8167 30 0.23862 2.84929 2.43386 2.70756 30 - -
8168 1.38629 1.38629 1.38629 1.38629
8169 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8170 31 2.53331 3.02441 0.20344 2.88069 31 - -
8171 1.38629 1.38629 1.38629 1.38629
8172 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8173 32 2.81865 0.23582 2.88868 2.35662 32 - -
8174 1.38629 1.38629 1.38629 1.38629
8175 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8176 33 0.23862 2.84929 2.43386 2.70756 33 - -
8177 1.38629 1.38629 1.38629 1.38629
8178 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8179 34 0.23862 2.84929 2.43386 2.70756 34 - -
8180 1.38629 1.38629 1.38629 1.38629
8181 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8182 35 2.81865 0.23582 2.88868 2.35662 35 - -
8183 1.38629 1.38629 1.38629 1.38629
8184 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8185 36 2.53331 3.02441 0.20344 2.88069 36 - -
8186 1.38629 1.38629 1.38629 1.38629
8187 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8188 37 0.23862 2.84929 2.43386 2.70756 37 - -
8189 1.38629 1.38629 1.38629 1.38629
8190 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8191 38 2.57915 2.25909 2.64442 0.28946 38 - -
8192 1.38629 1.38629 1.38629 1.38629
8193 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8194 39 2.53331 3.02441 0.20344 2.88069 39 - -
8195 1.38629 1.38629 1.38629 1.38629
8196 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8197 40 0.23862 2.84929 2.43386 2.70756 40 - -
8198 1.38629 1.38629 1.38629 1.38629
8199 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8200 41 0.23862 2.84929 2.43386 2.70756 41 - -
8201 1.38629 1.38629 1.38629 1.38629
8202 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8203 42 2.53331 3.02441 0.20344 2.88069 42 - -
8204 1.38629 1.38629 1.38629 1.38629
8205 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8206 43 2.53331 3.02441 0.20344 2.88069 43 - -
8207 1.38629 1.38629 1.38629 1.38629
8208 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8209 44 2.53331 3.02441 0.20344 2.88069 44 - -
8210 1.38629 1.38629 1.38629 1.38629
8211 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8212 45 2.81865 0.23582 2.88868 2.35662 45 - -
8213 1.38629 1.38629 1.38629 1.38629
8214 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
8215 //
8216 HMMER3/b [3.0 | March 2010]
8217 NAME 2_5.8_Alveolata_58S_start_fourb_long
8218 LENG 45
8219 ALPH DNA
8220 RF no
8221 CS no
8222 MAP yes
8223 DATE Wed Feb 29 13:26:19 2012
8224 NSEQ 2
8225 EFFN 2.000000
8226 CKSUM 909930947
8227 STATS LOCAL MSV -7.5897 0.72766
8228 STATS LOCAL VITERBI -8.2123 0.72766
8229 STATS LOCAL FORWARD -3.0207 0.72766
8230 HMM A C G T
8231 m->m m->i m->d i->m i->i d->m d->d
8232 COMPO 1.34189 1.34952 1.31824 1.55270
8233 1.38629 1.38629 1.38629 1.38629
8234 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
8235 1 2.81865 0.23582 2.88868 2.35662 1 - -
8236 1.38629 1.38629 1.38629 1.38629
8237 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8238 2 0.23862 2.84929 2.43386 2.70756 2 - -
8239 1.38629 1.38629 1.38629 1.38629
8240 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8241 3 0.23862 2.84929 2.43386 2.70756 3 - -
8242 1.38629 1.38629 1.38629 1.38629
8243 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8244 4 2.81865 0.23582 2.88868 2.35662 4 - -
8245 1.38629 1.38629 1.38629 1.38629
8246 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8247 5 2.57915 2.25909 2.64442 0.28946 5 - -
8248 1.38629 1.38629 1.38629 1.38629
8249 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8250 6 2.57915 2.25909 2.64442 0.28946 6 - -
8251 1.38629 1.38629 1.38629 1.38629
8252 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8253 7 2.57915 2.25909 2.64442 0.28946 7 - -
8254 1.38629 1.38629 1.38629 1.38629
8255 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8256 8 2.81865 0.23582 2.88868 2.35662 8 - -
8257 1.38629 1.38629 1.38629 1.38629
8258 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8259 9 0.23862 2.84929 2.43386 2.70756 9 - -
8260 1.38629 1.38629 1.38629 1.38629
8261 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8262 10 2.53331 3.02441 0.20344 2.88069 10 - -
8263 1.38629 1.38629 1.38629 1.38629
8264 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8265 11 2.81865 0.23582 2.88868 2.35662 11 - -
8266 1.38629 1.38629 1.38629 1.38629
8267 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8268 12 2.53331 3.02441 0.20344 2.88069 12 - -
8269 1.38629 1.38629 1.38629 1.38629
8270 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8271 13 0.23862 2.84929 2.43386 2.70756 13 - -
8272 1.38629 1.38629 1.38629 1.38629
8273 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8274 14 2.57915 2.25909 2.64442 0.28946 14 - -
8275 1.38629 1.38629 1.38629 1.38629
8276 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8277 15 2.81865 0.23582 2.88868 2.35662 15 - -
8278 1.38629 1.38629 1.38629 1.38629
8279 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8280 16 2.53331 3.02441 0.20344 2.88069 16 - -
8281 1.38629 1.38629 1.38629 1.38629
8282 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8283 17 0.23862 2.84929 2.43386 2.70756 17 - -
8284 1.38629 1.38629 1.38629 1.38629
8285 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8286 18 2.57915 2.25909 2.64442 0.28946 18 - -
8287 1.38629 1.38629 1.38629 1.38629
8288 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8289 19 2.53331 3.02441 0.20344 2.88069 19 - -
8290 1.38629 1.38629 1.38629 1.38629
8291 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8292 20 2.57915 2.25909 2.64442 0.28946 20 - -
8293 1.38629 1.38629 1.38629 1.38629
8294 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8295 21 2.81865 0.23582 2.88868 2.35662 21 - -
8296 1.38629 1.38629 1.38629 1.38629
8297 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8298 22 2.57915 2.25909 2.64442 0.28946 22 - -
8299 1.38629 1.38629 1.38629 1.38629
8300 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8301 23 2.81865 0.23582 2.88868 2.35662 23 - -
8302 1.38629 1.38629 1.38629 1.38629
8303 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8304 24 2.53331 3.02441 0.20344 2.88069 24 - -
8305 1.38629 1.38629 1.38629 1.38629
8306 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8307 25 2.53331 3.02441 0.20344 2.88069 25 - -
8308 1.38629 1.38629 1.38629 1.38629
8309 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8310 26 2.81865 0.23582 2.88868 2.35662 26 - -
8311 1.38629 1.38629 1.38629 1.38629
8312 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8313 27 2.57915 2.25909 2.64442 0.28946 27 - -
8314 1.38629 1.38629 1.38629 1.38629
8315 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8316 28 2.81865 0.23582 2.88868 2.35662 28 - -
8317 1.38629 1.38629 1.38629 1.38629
8318 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8319 29 2.53331 3.02441 0.20344 2.88069 29 - -
8320 1.38629 1.38629 1.38629 1.38629
8321 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8322 30 0.23862 2.84929 2.43386 2.70756 30 - -
8323 1.38629 1.38629 1.38629 1.38629
8324 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8325 31 0.23862 2.84929 2.43386 2.70756 31 - -
8326 1.38629 1.38629 1.38629 1.38629
8327 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8328 32 2.81865 0.23582 2.88868 2.35662 32 - -
8329 1.38629 1.38629 1.38629 1.38629
8330 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8331 33 0.23862 2.84929 2.43386 2.70756 33 - -
8332 1.38629 1.38629 1.38629 1.38629
8333 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8334 34 0.23862 2.84929 2.43386 2.70756 34 - -
8335 1.38629 1.38629 1.38629 1.38629
8336 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8337 35 2.81865 0.23582 2.88868 2.35662 35 - -
8338 1.38629 1.38629 1.38629 1.38629
8339 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8340 36 2.53331 3.02441 0.20344 2.88069 36 - -
8341 1.38629 1.38629 1.38629 1.38629
8342 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8343 37 0.23862 2.84929 2.43386 2.70756 37 - -
8344 1.38629 1.38629 1.38629 1.38629
8345 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8346 38 2.57915 2.25909 2.64442 0.28946 38 - -
8347 1.38629 1.38629 1.38629 1.38629
8348 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8349 39 2.53331 3.02441 0.20344 2.88069 39 - -
8350 1.38629 1.38629 1.38629 1.38629
8351 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8352 40 0.23862 2.84929 2.43386 2.70756 40 - -
8353 1.38629 1.38629 1.38629 1.38629
8354 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8355 41 0.23862 2.84929 2.43386 2.70756 41 - -
8356 1.38629 1.38629 1.38629 1.38629
8357 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8358 42 2.53331 3.02441 0.20344 2.88069 42 - -
8359 1.38629 1.38629 1.38629 1.38629
8360 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8361 43 2.53331 3.02441 0.20344 2.88069 43 - -
8362 1.38629 1.38629 1.38629 1.38629
8363 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8364 44 2.53331 3.02441 0.20344 2.88069 44 - -
8365 1.38629 1.38629 1.38629 1.38629
8366 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
8367 45 2.81865 0.23582 2.88868 2.35662 45 - -
8368 1.38629 1.38629 1.38629 1.38629
8369 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
8370 //
8371 HMMER3/b [3.0 | March 2010]
8372 NAME 2_5.8_Alveolata_58S_start_fourteen_long
8373 LENG 45
8374 ALPH DNA
8375 RF no
8376 CS no
8377 MAP yes
8378 DATE Wed Feb 29 13:28:14 2012
8379 NSEQ 3
8380 EFFN 3.000000
8381 CKSUM 3318248282
8382 STATS LOCAL MSV -7.9911 0.72105
8383 STATS LOCAL VITERBI -7.7365 0.72105
8384 STATS LOCAL FORWARD -4.0158 0.72105
8385 HMM A C G T
8386 m->m m->i m->d i->m i->i d->m d->d
8387 COMPO 1.21240 1.73126 1.43760 1.24493
8388 1.38629 1.38629 1.38629 1.38629
8389 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
8390 1 0.15719 3.27118 2.73043 3.16274 1 - -
8391 1.38629 1.38629 1.38629 1.38629
8392 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8393 2 2.43223 0.62271 2.50508 1.22417 2 - -
8394 1.38629 1.38629 1.38629 1.38629
8395 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8396 3 0.15719 3.27118 2.73043 3.16274 3 - -
8397 1.38629 1.38629 1.38629 1.38629
8398 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8399 4 3.30705 0.14631 3.36166 2.73626 4 - -
8400 1.38629 1.38629 1.38629 1.38629
8401 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8402 5 2.97980 2.52563 3.03204 0.19727 5 - -
8403 1.38629 1.38629 1.38629 1.38629
8404 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8405 6 2.97980 2.52563 3.03204 0.19727 6 - -
8406 1.38629 1.38629 1.38629 1.38629
8407 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8408 7 2.97980 2.52563 3.03204 0.19727 7 - -
8409 1.38629 1.38629 1.38629 1.38629
8410 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8411 8 0.15719 3.27118 2.73043 3.16274 8 - -
8412 1.38629 1.38629 1.38629 1.38629
8413 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8414 9 0.15719 3.27118 2.73043 3.16274 9 - -
8415 1.38629 1.38629 1.38629 1.38629
8416 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8417 10 2.86982 3.47591 0.13017 3.36931 10 - -
8418 1.38629 1.38629 1.38629 1.38629
8419 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8420 11 2.97980 2.52563 3.03204 0.19727 11 - -
8421 1.38629 1.38629 1.38629 1.38629
8422 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8423 12 0.15719 3.27118 2.73043 3.16274 12 - -
8424 1.38629 1.38629 1.38629 1.38629
8425 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8426 13 0.15719 3.27118 2.73043 3.16274 13 - -
8427 1.38629 1.38629 1.38629 1.38629
8428 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8429 14 2.97980 2.52563 3.03204 0.19727 14 - -
8430 1.38629 1.38629 1.38629 1.38629
8431 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8432 15 2.86982 3.47591 0.13017 3.36931 15 - -
8433 1.38629 1.38629 1.38629 1.38629
8434 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8435 16 2.86982 3.47591 0.13017 3.36931 16 - -
8436 1.38629 1.38629 1.38629 1.38629
8437 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8438 17 0.15719 3.27118 2.73043 3.16274 17 - -
8439 1.38629 1.38629 1.38629 1.38629
8440 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8441 18 2.97980 2.52563 3.03204 0.19727 18 - -
8442 1.38629 1.38629 1.38629 1.38629
8443 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8444 19 2.86982 3.47591 0.13017 3.36931 19 - -
8445 1.38629 1.38629 1.38629 1.38629
8446 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8447 20 2.97980 2.52563 3.03204 0.19727 20 - -
8448 1.38629 1.38629 1.38629 1.38629
8449 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8450 21 3.30705 0.14631 3.36166 2.73626 21 - -
8451 1.38629 1.38629 1.38629 1.38629
8452 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8453 22 2.97980 2.52563 3.03204 0.19727 22 - -
8454 1.38629 1.38629 1.38629 1.38629
8455 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8456 23 2.97980 2.52563 3.03204 0.19727 23 - -
8457 1.38629 1.38629 1.38629 1.38629
8458 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8459 24 2.86982 3.47591 0.13017 3.36931 24 - -
8460 1.38629 1.38629 1.38629 1.38629
8461 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8462 25 2.86982 3.47591 0.13017 3.36931 25 - -
8463 1.38629 1.38629 1.38629 1.38629
8464 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8465 26 2.97980 2.52563 3.03204 0.19727 26 - -
8466 1.38629 1.38629 1.38629 1.38629
8467 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8468 27 2.97980 2.52563 3.03204 0.19727 27 - -
8469 1.38629 1.38629 1.38629 1.38629
8470 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8471 28 3.30705 0.14631 3.36166 2.73626 28 - -
8472 1.38629 1.38629 1.38629 1.38629
8473 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8474 29 2.97980 2.52563 3.03204 0.19727 29 - -
8475 1.38629 1.38629 1.38629 1.38629
8476 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8477 30 3.30705 0.14631 3.36166 2.73626 30 - -
8478 1.38629 1.38629 1.38629 1.38629
8479 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8480 31 0.15719 3.27118 2.73043 3.16274 31 - -
8481 1.38629 1.38629 1.38629 1.38629
8482 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8483 32 2.97980 2.52563 3.03204 0.19727 32 - -
8484 1.38629 1.38629 1.38629 1.38629
8485 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8486 33 0.15719 3.27118 2.73043 3.16274 33 - -
8487 1.38629 1.38629 1.38629 1.38629
8488 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8489 34 0.15719 3.27118 2.73043 3.16274 34 - -
8490 1.38629 1.38629 1.38629 1.38629
8491 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8492 35 3.30705 0.14631 3.36166 2.73626 35 - -
8493 1.38629 1.38629 1.38629 1.38629
8494 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8495 36 2.86982 3.47591 0.13017 3.36931 36 - -
8496 1.38629 1.38629 1.38629 1.38629
8497 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8498 37 0.15719 3.27118 2.73043 3.16274 37 - -
8499 1.38629 1.38629 1.38629 1.38629
8500 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8501 38 2.97980 2.52563 3.03204 0.19727 38 - -
8502 1.38629 1.38629 1.38629 1.38629
8503 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8504 39 2.86982 3.47591 0.13017 3.36931 39 - -
8505 1.38629 1.38629 1.38629 1.38629
8506 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8507 40 0.15719 3.27118 2.73043 3.16274 40 - -
8508 1.38629 1.38629 1.38629 1.38629
8509 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8510 41 0.15719 3.27118 2.73043 3.16274 41 - -
8511 1.38629 1.38629 1.38629 1.38629
8512 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8513 42 2.86982 3.47591 0.13017 3.36931 42 - -
8514 1.38629 1.38629 1.38629 1.38629
8515 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8516 43 2.86982 3.47591 0.13017 3.36931 43 - -
8517 1.38629 1.38629 1.38629 1.38629
8518 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8519 44 0.15719 3.27118 2.73043 3.16274 44 - -
8520 1.38629 1.38629 1.38629 1.38629
8521 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
8522 45 3.30705 0.14631 3.36166 2.73626 45 - -
8523 1.38629 1.38629 1.38629 1.38629
8524 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
8525 //
8526 HMMER3/b [3.0 | March 2010]
8527 NAME 2_5.8_Alveolata_58S_start_one_long
8528 LENG 45
8529 ALPH DNA
8530 RF no
8531 CS no
8532 MAP yes
8533 DATE Wed Feb 29 13:25:26 2012
8534 NSEQ 4
8535 EFFN 3.691406
8536 CKSUM 2670710095
8537 STATS LOCAL MSV -7.7237 0.71932
8538 STATS LOCAL VITERBI -7.6214 0.71932
8539 STATS LOCAL FORWARD -3.8013 0.71932
8540 HMM A C G T
8541 m->m m->i m->d i->m i->i d->m d->d
8542 COMPO 1.05540 2.03553 1.56163 1.16622
8543 1.38629 1.38629 1.38629 1.38629
8544 0.03454 4.07608 4.07608 1.46634 0.26236 0.00000 *
8545 1 0.96133 2.18963 2.20654 0.92741 1 - -
8546 1.38629 1.38629 1.38629 1.38629
8547 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8548 2 3.20221 2.66723 3.24596 0.16140 2 - -
8549 1.38629 1.38629 1.38629 1.38629
8550 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8551 3 0.12806 3.49137 2.87366 3.40376 3 - -
8552 1.38629 1.38629 1.38629 1.38629
8553 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8554 4 3.20221 2.66723 3.24596 0.16140 4 - -
8555 1.38629 1.38629 1.38629 1.38629
8556 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8557 5 3.02354 3.69924 0.10566 3.61577 5 - -
8558 1.38629 1.38629 1.38629 1.38629
8559 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8560 6 3.20221 2.66723 3.24596 0.16140 6 - -
8561 1.38629 1.38629 1.38629 1.38629
8562 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8563 7 3.20221 2.66723 3.24596 0.16140 7 - -
8564 1.38629 1.38629 1.38629 1.38629
8565 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8566 8 3.20221 2.66723 3.24596 0.16140 8 - -
8567 1.38629 1.38629 1.38629 1.38629
8568 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8569 9 3.20221 2.66723 3.24596 0.16140 9 - -
8570 1.38629 1.38629 1.38629 1.38629
8571 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8572 10 3.02354 3.69924 0.10566 3.61577 10 - -
8573 1.38629 1.38629 1.38629 1.38629
8574 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8575 11 3.56062 0.11598 3.60449 2.92094 11 - -
8576 1.38629 1.38629 1.38629 1.38629
8577 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8578 12 0.12806 3.49137 2.87366 3.40376 12 - -
8579 1.38629 1.38629 1.38629 1.38629
8580 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8581 13 0.12806 3.49137 2.87366 3.40376 13 - -
8582 1.38629 1.38629 1.38629 1.38629
8583 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8584 14 0.12806 3.49137 2.87366 3.40376 14 - -
8585 1.38629 1.38629 1.38629 1.38629
8586 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8587 15 3.02354 3.69924 0.10566 3.61577 15 - -
8588 1.38629 1.38629 1.38629 1.38629
8589 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8590 16 0.12806 3.49137 2.87366 3.40376 16 - -
8591 1.38629 1.38629 1.38629 1.38629
8592 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8593 17 0.12806 3.49137 2.87366 3.40376 17 - -
8594 1.38629 1.38629 1.38629 1.38629
8595 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8596 18 3.20221 2.66723 3.24596 0.16140 18 - -
8597 1.38629 1.38629 1.38629 1.38629
8598 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8599 19 3.02354 3.69924 0.10566 3.61577 19 - -
8600 1.38629 1.38629 1.38629 1.38629
8601 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8602 20 3.20221 2.66723 3.24596 0.16140 20 - -
8603 1.38629 1.38629 1.38629 1.38629
8604 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8605 21 3.56062 0.11598 3.60449 2.92094 21 - -
8606 1.38629 1.38629 1.38629 1.38629
8607 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8608 22 3.20221 2.66723 3.24596 0.16140 22 - -
8609 1.38629 1.38629 1.38629 1.38629
8610 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8611 23 3.20221 2.66723 3.24596 0.16140 23 - -
8612 1.38629 1.38629 1.38629 1.38629
8613 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8614 24 0.12806 3.49137 2.87366 3.40376 24 - -
8615 1.38629 1.38629 1.38629 1.38629
8616 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8617 25 3.02354 3.69924 0.10566 3.61577 25 - -
8618 1.38629 1.38629 1.38629 1.38629
8619 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8620 26 3.56062 0.11598 3.60449 2.92094 26 - -
8621 1.38629 1.38629 1.38629 1.38629
8622 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8623 27 3.20221 2.66723 3.24596 0.16140 27 - -
8624 1.38629 1.38629 1.38629 1.38629
8625 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8626 28 3.56062 0.11598 3.60449 2.92094 28 - -
8627 1.38629 1.38629 1.38629 1.38629
8628 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8629 29 0.12806 3.49137 2.87366 3.40376 29 - -
8630 1.38629 1.38629 1.38629 1.38629
8631 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8632 30 0.12806 3.49137 2.87366 3.40376 30 - -
8633 1.38629 1.38629 1.38629 1.38629
8634 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8635 31 3.20221 2.66723 3.24596 0.16140 31 - -
8636 1.38629 1.38629 1.38629 1.38629
8637 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8638 32 0.12806 3.49137 2.87366 3.40376 32 - -
8639 1.38629 1.38629 1.38629 1.38629
8640 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8641 33 0.84713 2.57557 0.89799 2.43206 33 - -
8642 1.38629 1.38629 1.38629 1.38629
8643 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8644 34 0.12806 3.49137 2.87366 3.40376 34 - -
8645 1.38629 1.38629 1.38629 1.38629
8646 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8647 35 3.20221 2.66723 3.24596 0.16140 35 - -
8648 1.38629 1.38629 1.38629 1.38629
8649 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8650 36 3.02354 3.69924 0.10566 3.61577 36 - -
8651 1.38629 1.38629 1.38629 1.38629
8652 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8653 37 0.12806 3.49137 2.87366 3.40376 37 - -
8654 1.38629 1.38629 1.38629 1.38629
8655 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8656 38 3.20221 2.66723 3.24596 0.16140 38 - -
8657 1.38629 1.38629 1.38629 1.38629
8658 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8659 39 3.02354 3.69924 0.10566 3.61577 39 - -
8660 1.38629 1.38629 1.38629 1.38629
8661 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8662 40 0.12806 3.49137 2.87366 3.40376 40 - -
8663 1.38629 1.38629 1.38629 1.38629
8664 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8665 41 0.12806 3.49137 2.87366 3.40376 41 - -
8666 1.38629 1.38629 1.38629 1.38629
8667 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8668 42 3.02354 3.69924 0.10566 3.61577 42 - -
8669 1.38629 1.38629 1.38629 1.38629
8670 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8671 43 0.12806 3.49137 2.87366 3.40376 43 - -
8672 1.38629 1.38629 1.38629 1.38629
8673 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8674 44 0.12806 3.49137 2.87366 3.40376 44 - -
8675 1.38629 1.38629 1.38629 1.38629
8676 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547
8677 45 3.20221 2.66723 3.24596 0.16140 45 - -
8678 1.38629 1.38629 1.38629 1.38629
8679 0.01742 4.05896 * 1.46634 0.26236 0.00000 *
8680 //
8681 HMMER3/b [3.0 | March 2010]
8682 NAME 2_5.8_Alveolata_58S_start_sixa_long
8683 LENG 45
8684 ALPH DNA
8685 RF no
8686 CS no
8687 MAP yes
8688 DATE Wed Feb 29 13:26:35 2012
8689 NSEQ 15
8690 EFFN 3.687744
8691 CKSUM 797667666
8692 STATS LOCAL MSV -7.6502 0.71933
8693 STATS LOCAL VITERBI -7.7243 0.71933
8694 STATS LOCAL FORWARD -4.2597 0.71933
8695 HMM A C G T
8696 m->m m->i m->d i->m i->i d->m d->d
8697 COMPO 1.16124 1.50955 1.53139 1.38767
8698 1.38629 1.38629 1.38629 1.38629
8699 0.03456 4.07546 4.07546 1.46634 0.26236 0.00000 *
8700 1 0.12818 3.49033 2.87299 3.40262 1 - -
8701 1.38629 1.38629 1.38629 1.38629
8702 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8703 2 0.12818 3.49033 2.87299 3.40262 2 - -
8704 1.38629 1.38629 1.38629 1.38629
8705 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8706 3 0.12818 3.49033 2.87299 3.40262 3 - -
8707 1.38629 1.38629 1.38629 1.38629
8708 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8709 4 3.20113 2.66655 3.24493 0.16155 4 - -
8710 1.38629 1.38629 1.38629 1.38629
8711 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8712 5 3.20113 2.66655 3.24493 0.16155 5 - -
8713 1.38629 1.38629 1.38629 1.38629
8714 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8715 6 3.55943 0.11610 3.60336 2.92009 6 - -
8716 1.38629 1.38629 1.38629 1.38629
8717 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8718 7 3.20113 2.66655 3.24493 0.16155 7 - -
8719 1.38629 1.38629 1.38629 1.38629
8720 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8721 8 3.55943 0.11610 3.60336 2.92009 8 - -
8722 1.38629 1.38629 1.38629 1.38629
8723 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8724 9 0.12818 3.49033 2.87299 3.40262 9 - -
8725 1.38629 1.38629 1.38629 1.38629
8726 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8727 10 0.12818 3.49033 2.87299 3.40262 10 - -
8728 1.38629 1.38629 1.38629 1.38629
8729 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8730 11 3.55943 0.11610 3.60336 2.92009 11 - -
8731 1.38629 1.38629 1.38629 1.38629
8732 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8733 12 3.02284 3.69821 0.10576 3.61463 12 - -
8734 1.38629 1.38629 1.38629 1.38629
8735 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8736 13 0.94059 2.58194 0.80594 2.43831 13 - -
8737 1.38629 1.38629 1.38629 1.38629
8738 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8739 14 3.20113 2.66655 3.24493 0.16155 14 - -
8740 1.38629 1.38629 1.38629 1.38629
8741 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8742 15 3.02284 3.69821 0.10576 3.61463 15 - -
8743 1.38629 1.38629 1.38629 1.38629
8744 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8745 16 3.02284 3.69821 0.10576 3.61463 16 - -
8746 1.38629 1.38629 1.38629 1.38629
8747 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8748 17 0.12818 3.49033 2.87299 3.40262 17 - -
8749 1.38629 1.38629 1.38629 1.38629
8750 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8751 18 3.20113 2.66655 3.24493 0.16155 18 - -
8752 1.38629 1.38629 1.38629 1.38629
8753 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8754 19 0.94059 2.58194 0.80594 2.43831 19 - -
8755 1.38629 1.38629 1.38629 1.38629
8756 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8757 20 3.20113 2.66655 3.24493 0.16155 20 - -
8758 1.38629 1.38629 1.38629 1.38629
8759 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8760 21 3.55943 0.11610 3.60336 2.92009 21 - -
8761 1.38629 1.38629 1.38629 1.38629
8762 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8763 22 3.20113 2.66655 3.24493 0.16155 22 - -
8764 1.38629 1.38629 1.38629 1.38629
8765 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8766 23 3.20113 2.66655 3.24493 0.16155 23 - -
8767 1.38629 1.38629 1.38629 1.38629
8768 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8769 24 3.02284 3.69821 0.10576 3.61463 24 - -
8770 1.38629 1.38629 1.38629 1.38629
8771 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8772 25 3.02284 3.69821 0.10576 3.61463 25 - -
8773 1.38629 1.38629 1.38629 1.38629
8774 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8775 26 3.20113 2.66655 3.24493 0.16155 26 - -
8776 1.38629 1.38629 1.38629 1.38629
8777 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8778 27 3.20113 2.66655 3.24493 0.16155 27 - -
8779 1.38629 1.38629 1.38629 1.38629
8780 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8781 28 3.55943 0.11610 3.60336 2.92009 28 - -
8782 1.38629 1.38629 1.38629 1.38629
8783 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8784 29 3.55943 0.11610 3.60336 2.92009 29 - -
8785 1.38629 1.38629 1.38629 1.38629
8786 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8787 30 3.55943 0.11610 3.60336 2.92009 30 - -
8788 1.38629 1.38629 1.38629 1.38629
8789 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8790 31 0.12818 3.49033 2.87299 3.40262 31 - -
8791 1.38629 1.38629 1.38629 1.38629
8792 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8793 32 2.51659 1.18738 2.58588 0.61820 32 - -
8794 1.38629 1.38629 1.38629 1.38629
8795 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8796 33 0.12818 3.49033 2.87299 3.40262 33 - -
8797 1.38629 1.38629 1.38629 1.38629
8798 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8799 34 0.12818 3.49033 2.87299 3.40262 34 - -
8800 1.38629 1.38629 1.38629 1.38629
8801 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8802 35 3.55943 0.11610 3.60336 2.92009 35 - -
8803 1.38629 1.38629 1.38629 1.38629
8804 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8805 36 3.02284 3.69821 0.10576 3.61463 36 - -
8806 1.38629 1.38629 1.38629 1.38629
8807 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8808 37 0.12818 3.49033 2.87299 3.40262 37 - -
8809 1.38629 1.38629 1.38629 1.38629
8810 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8811 38 3.20113 2.66655 3.24493 0.16155 38 - -
8812 1.38629 1.38629 1.38629 1.38629
8813 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8814 39 3.02284 3.69821 0.10576 3.61463 39 - -
8815 1.38629 1.38629 1.38629 1.38629
8816 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8817 40 0.12818 3.49033 2.87299 3.40262 40 - -
8818 1.38629 1.38629 1.38629 1.38629
8819 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8820 41 0.12818 3.49033 2.87299 3.40262 41 - -
8821 1.38629 1.38629 1.38629 1.38629
8822 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8823 42 3.02284 3.69821 0.10576 3.61463 42 - -
8824 1.38629 1.38629 1.38629 1.38629
8825 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8826 43 0.12818 3.49033 2.87299 3.40262 43 - -
8827 1.38629 1.38629 1.38629 1.38629
8828 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8829 44 0.12818 3.49033 2.87299 3.40262 44 - -
8830 1.38629 1.38629 1.38629 1.38629
8831 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547
8832 45 3.55943 0.11610 3.60336 2.92009 45 - -
8833 1.38629 1.38629 1.38629 1.38629
8834 0.01743 4.05833 * 1.46634 0.26236 0.00000 *
8835 //
8836 HMMER3/b [3.0 | March 2010]
8837 NAME 2_5.8_Alveolata_58S_start_sixb_long
8838 LENG 45
8839 ALPH DNA
8840 RF no
8841 CS no
8842 MAP yes
8843 DATE Wed Feb 29 13:26:43 2012
8844 NSEQ 8
8845 EFFN 3.558594
8846 CKSUM 2758897519
8847 STATS LOCAL MSV -7.6565 0.71933
8848 STATS LOCAL VITERBI -7.6277 0.71933
8849 STATS LOCAL FORWARD -3.9158 0.71933
8850 HMM A C G T
8851 m->m m->i m->d i->m i->i d->m d->d
8852 COMPO 1.10338 1.44505 1.58840 1.47724
8853 1.38629 1.38629 1.38629 1.38629
8854 0.03535 4.05328 4.05328 1.46634 0.26236 0.00000 *
8855 1 0.13267 3.45290 2.84891 3.36153 1 - -
8856 1.38629 1.38629 1.38629 1.38629
8857 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8858 2 0.13267 3.45290 2.84891 3.36153 2 - -
8859 1.38629 1.38629 1.38629 1.38629
8860 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8861 3 0.13267 3.45290 2.84891 3.36153 3 - -
8862 1.38629 1.38629 1.38629 1.38629
8863 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8864 4 3.16254 2.64208 3.20785 0.16721 4 - -
8865 1.38629 1.38629 1.38629 1.38629
8866 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8867 5 3.51660 0.12068 3.56245 2.88939 5 - -
8868 1.38629 1.38629 1.38629 1.38629
8869 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8870 6 3.51660 0.12068 3.56245 2.88939 6 - -
8871 1.38629 1.38629 1.38629 1.38629
8872 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8873 7 3.16254 2.64208 3.20785 0.16721 7 - -
8874 1.38629 1.38629 1.38629 1.38629
8875 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8876 8 3.51660 0.12068 3.56245 2.88939 8 - -
8877 1.38629 1.38629 1.38629 1.38629
8878 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8879 9 0.13267 3.45290 2.84891 3.36153 9 - -
8880 1.38629 1.38629 1.38629 1.38629
8881 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8882 10 0.13267 3.45290 2.84891 3.36153 10 - -
8883 1.38629 1.38629 1.38629 1.38629
8884 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8885 11 3.51660 0.12068 3.56245 2.88939 11 - -
8886 1.38629 1.38629 1.38629 1.38629
8887 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8888 12 2.99754 3.66093 0.10946 3.57332 12 - -
8889 1.38629 1.38629 1.38629 1.38629
8890 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8891 13 0.13267 3.45290 2.84891 3.36153 13 - -
8892 1.38629 1.38629 1.38629 1.38629
8893 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8894 14 3.16254 2.64208 3.20785 0.16721 14 - -
8895 1.38629 1.38629 1.38629 1.38629
8896 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8897 15 2.99754 3.66093 0.10946 3.57332 15 - -
8898 1.38629 1.38629 1.38629 1.38629
8899 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8900 16 2.99754 3.66093 0.10946 3.57332 16 - -
8901 1.38629 1.38629 1.38629 1.38629
8902 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8903 17 0.13267 3.45290 2.84891 3.36153 17 - -
8904 1.38629 1.38629 1.38629 1.38629
8905 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8906 18 3.16254 2.64208 3.20785 0.16721 18 - -
8907 1.38629 1.38629 1.38629 1.38629
8908 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8909 19 0.39802 2.79742 1.62044 2.66543 19 - -
8910 1.38629 1.38629 1.38629 1.38629
8911 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8912 20 3.16254 2.64208 3.20785 0.16721 20 - -
8913 1.38629 1.38629 1.38629 1.38629
8914 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8915 21 3.51660 0.12068 3.56245 2.88939 21 - -
8916 1.38629 1.38629 1.38629 1.38629
8917 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8918 22 3.16254 2.64208 3.20785 0.16721 22 - -
8919 1.38629 1.38629 1.38629 1.38629
8920 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8921 23 0.13267 3.45290 2.84891 3.36153 23 - -
8922 1.38629 1.38629 1.38629 1.38629
8923 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8924 24 2.99754 3.66093 0.10946 3.57332 24 - -
8925 1.38629 1.38629 1.38629 1.38629
8926 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8927 25 2.99754 3.66093 0.10946 3.57332 25 - -
8928 1.38629 1.38629 1.38629 1.38629
8929 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8930 26 3.16254 2.64208 3.20785 0.16721 26 - -
8931 1.38629 1.38629 1.38629 1.38629
8932 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8933 27 3.16254 2.64208 3.20785 0.16721 27 - -
8934 1.38629 1.38629 1.38629 1.38629
8935 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8936 28 3.51660 0.12068 3.56245 2.88939 28 - -
8937 1.38629 1.38629 1.38629 1.38629
8938 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8939 29 3.51660 0.12068 3.56245 2.88939 29 - -
8940 1.38629 1.38629 1.38629 1.38629
8941 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8942 30 2.63794 1.53936 2.70289 0.43547 30 - -
8943 1.38629 1.38629 1.38629 1.38629
8944 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8945 31 0.13267 3.45290 2.84891 3.36153 31 - -
8946 1.38629 1.38629 1.38629 1.38629
8947 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8948 32 3.51660 0.12068 3.56245 2.88939 32 - -
8949 1.38629 1.38629 1.38629 1.38629
8950 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8951 33 1.49627 2.23192 2.35305 0.55576 33 - -
8952 1.38629 1.38629 1.38629 1.38629
8953 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8954 34 0.13267 3.45290 2.84891 3.36153 34 - -
8955 1.38629 1.38629 1.38629 1.38629
8956 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8957 35 3.51660 0.12068 3.56245 2.88939 35 - -
8958 1.38629 1.38629 1.38629 1.38629
8959 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8960 36 2.99754 3.66093 0.10946 3.57332 36 - -
8961 1.38629 1.38629 1.38629 1.38629
8962 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8963 37 0.13267 3.45290 2.84891 3.36153 37 - -
8964 1.38629 1.38629 1.38629 1.38629
8965 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8966 38 3.16254 2.64208 3.20785 0.16721 38 - -
8967 1.38629 1.38629 1.38629 1.38629
8968 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8969 39 2.99754 3.66093 0.10946 3.57332 39 - -
8970 1.38629 1.38629 1.38629 1.38629
8971 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8972 40 0.13267 3.45290 2.84891 3.36153 40 - -
8973 1.38629 1.38629 1.38629 1.38629
8974 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8975 41 0.13267 3.45290 2.84891 3.36153 41 - -
8976 1.38629 1.38629 1.38629 1.38629
8977 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8978 42 2.99754 3.66093 0.10946 3.57332 42 - -
8979 1.38629 1.38629 1.38629 1.38629
8980 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8981 43 0.13267 3.45290 2.84891 3.36153 43 - -
8982 1.38629 1.38629 1.38629 1.38629
8983 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8984 44 0.13267 3.45290 2.84891 3.36153 44 - -
8985 1.38629 1.38629 1.38629 1.38629
8986 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547
8987 45 3.51660 0.12068 3.56245 2.88939 45 - -
8988 1.38629 1.38629 1.38629 1.38629
8989 0.01783 4.03576 * 1.46634 0.26236 0.00000 *
8990 //
8991 HMMER3/b [3.0 | March 2010]
8992 NAME 2_5.8_Alveolata_58S_start_sixc_long
8993 LENG 45
8994 ALPH DNA
8995 RF no
8996 CS no
8997 MAP yes
8998 DATE Wed Feb 29 13:26:50 2012
8999 NSEQ 13
9000 EFFN 3.443604
9001 CKSUM 4173496295
9002 STATS LOCAL MSV -7.6779 0.71933
9003 STATS LOCAL VITERBI -7.6270 0.71933
9004 STATS LOCAL FORWARD -4.2468 0.71933
9005 HMM A C G T
9006 m->m m->i m->d i->m i->i d->m d->d
9007 COMPO 1.09130 1.57353 1.59959 1.36677
9008 1.38629 1.38629 1.38629 1.38629
9009 0.03608 4.03311 4.03311 1.46634 0.26236 0.00000 *
9010 1 0.13699 3.41821 2.82651 3.32349 1 - -
9011 1.38629 1.38629 1.38629 1.38629
9012 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9013 2 0.13699 3.41821 2.82651 3.32349 2 - -
9014 1.38629 1.38629 1.38629 1.38629
9015 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9016 3 0.13699 3.41821 2.82651 3.32349 3 - -
9017 1.38629 1.38629 1.38629 1.38629
9018 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9019 4 3.12708 2.61958 3.17375 0.17260 4 - -
9020 1.38629 1.38629 1.38629 1.38629
9021 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9022 5 3.12708 2.61958 3.17375 0.17260 5 - -
9023 1.38629 1.38629 1.38629 1.38629
9024 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9025 6 3.12708 2.61958 3.17375 0.17260 6 - -
9026 1.38629 1.38629 1.38629 1.38629
9027 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9028 7 3.12708 2.61958 3.17375 0.17260 7 - -
9029 1.38629 1.38629 1.38629 1.38629
9030 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9031 8 3.47678 0.12512 3.52437 2.86068 8 - -
9032 1.38629 1.38629 1.38629 1.38629
9033 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9034 9 0.13699 3.41821 2.82651 3.32349 9 - -
9035 1.38629 1.38629 1.38629 1.38629
9036 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9037 10 0.13699 3.41821 2.82651 3.32349 10 - -
9038 1.38629 1.38629 1.38629 1.38629
9039 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9040 11 3.47678 0.12512 3.52437 2.86068 11 - -
9041 1.38629 1.38629 1.38629 1.38629
9042 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9043 12 2.97381 3.62611 0.11305 3.53480 12 - -
9044 1.38629 1.38629 1.38629 1.38629
9045 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9046 13 0.13699 3.41821 2.82651 3.32349 13 - -
9047 1.38629 1.38629 1.38629 1.38629
9048 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9049 14 3.12708 2.61958 3.17375 0.17260 14 - -
9050 1.38629 1.38629 1.38629 1.38629
9051 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9052 15 2.97381 3.62611 0.11305 3.53480 15 - -
9053 1.38629 1.38629 1.38629 1.38629
9054 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9055 16 2.97381 3.62611 0.11305 3.53480 16 - -
9056 1.38629 1.38629 1.38629 1.38629
9057 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9058 17 0.13699 3.41821 2.82651 3.32349 17 - -
9059 1.38629 1.38629 1.38629 1.38629
9060 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9061 18 3.12708 2.61958 3.17375 0.17260 18 - -
9062 1.38629 1.38629 1.38629 1.38629
9063 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9064 19 0.13699 3.41821 2.82651 3.32349 19 - -
9065 1.38629 1.38629 1.38629 1.38629
9066 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9067 20 3.12708 2.61958 3.17375 0.17260 20 - -
9068 1.38629 1.38629 1.38629 1.38629
9069 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9070 21 3.47678 0.12512 3.52437 2.86068 21 - -
9071 1.38629 1.38629 1.38629 1.38629
9072 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9073 22 3.12708 2.61958 3.17375 0.17260 22 - -
9074 1.38629 1.38629 1.38629 1.38629
9075 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9076 23 0.13699 3.41821 2.82651 3.32349 23 - -
9077 1.38629 1.38629 1.38629 1.38629
9078 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9079 24 2.97381 3.62611 0.11305 3.53480 24 - -
9080 1.38629 1.38629 1.38629 1.38629
9081 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9082 25 2.97381 3.62611 0.11305 3.53480 25 - -
9083 1.38629 1.38629 1.38629 1.38629
9084 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9085 26 3.47678 0.12512 3.52437 2.86068 26 - -
9086 1.38629 1.38629 1.38629 1.38629
9087 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9088 27 3.12708 2.61958 3.17375 0.17260 27 - -
9089 1.38629 1.38629 1.38629 1.38629
9090 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9091 28 3.47678 0.12512 3.52437 2.86068 28 - -
9092 1.38629 1.38629 1.38629 1.38629
9093 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9094 29 3.47678 0.12512 3.52437 2.86068 29 - -
9095 1.38629 1.38629 1.38629 1.38629
9096 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9097 30 3.12708 2.61958 3.17375 0.17260 30 - -
9098 1.38629 1.38629 1.38629 1.38629
9099 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9100 31 0.13699 3.41821 2.82651 3.32349 31 - -
9101 1.38629 1.38629 1.38629 1.38629
9102 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9103 32 3.12708 2.61958 3.17375 0.17260 32 - -
9104 1.38629 1.38629 1.38629 1.38629
9105 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9106 33 0.13699 3.41821 2.82651 3.32349 33 - -
9107 1.38629 1.38629 1.38629 1.38629
9108 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9109 34 1.39388 0.65071 2.27615 2.05938 34 - -
9110 1.38629 1.38629 1.38629 1.38629
9111 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9112 35 3.47678 0.12512 3.52437 2.86068 35 - -
9113 1.38629 1.38629 1.38629 1.38629
9114 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9115 36 2.97381 3.62611 0.11305 3.53480 36 - -
9116 1.38629 1.38629 1.38629 1.38629
9117 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9118 37 0.13699 3.41821 2.82651 3.32349 37 - -
9119 1.38629 1.38629 1.38629 1.38629
9120 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9121 38 3.12708 2.61958 3.17375 0.17260 38 - -
9122 1.38629 1.38629 1.38629 1.38629
9123 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9124 39 2.97381 3.62611 0.11305 3.53480 39 - -
9125 1.38629 1.38629 1.38629 1.38629
9126 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9127 40 0.13699 3.41821 2.82651 3.32349 40 - -
9128 1.38629 1.38629 1.38629 1.38629
9129 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9130 41 0.13699 3.41821 2.82651 3.32349 41 - -
9131 1.38629 1.38629 1.38629 1.38629
9132 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9133 42 2.97381 3.62611 0.11305 3.53480 42 - -
9134 1.38629 1.38629 1.38629 1.38629
9135 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9136 43 0.13699 3.41821 2.82651 3.32349 43 - -
9137 1.38629 1.38629 1.38629 1.38629
9138 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9139 44 0.13699 3.41821 2.82651 3.32349 44 - -
9140 1.38629 1.38629 1.38629 1.38629
9141 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547
9142 45 3.47678 0.12512 3.52437 2.86068 45 - -
9143 1.38629 1.38629 1.38629 1.38629
9144 0.01820 4.01523 * 1.46634 0.26236 0.00000 *
9145 //
9146 HMMER3/b [3.0 | March 2010]
9147 NAME 2_5.8_Alveolata_58S_start_sixd_long
9148 LENG 45
9149 ALPH DNA
9150 RF no
9151 CS no
9152 MAP yes
9153 DATE Wed Feb 29 13:26:56 2012
9154 NSEQ 18
9155 EFFN 3.739746
9156 CKSUM 2077131438
9157 STATS LOCAL MSV -7.3089 0.71933
9158 STATS LOCAL VITERBI -7.8161 0.71933
9159 STATS LOCAL FORWARD -4.1699 0.71933
9160 HMM A C G T
9161 m->m m->i m->d i->m i->i d->m d->d
9162 COMPO 1.13317 1.60280 1.55991 1.32237
9163 1.38629 1.38629 1.38629 1.38629
9164 0.03425 4.08425 4.08425 1.46634 0.26236 0.00000 *
9165 1 0.12648 3.50496 2.88239 3.41868 1 - -
9166 1.38629 1.38629 1.38629 1.38629
9167 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9168 2 0.12648 3.50496 2.88239 3.41868 2 - -
9169 1.38629 1.38629 1.38629 1.38629
9170 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9171 3 0.12648 3.50496 2.88239 3.41868 3 - -
9172 1.38629 1.38629 1.38629 1.38629
9173 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9174 4 3.21631 2.67616 3.25951 0.15939 4 - -
9175 1.38629 1.38629 1.38629 1.38629
9176 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9177 5 3.21631 2.67616 3.25951 0.15939 5 - -
9178 1.38629 1.38629 1.38629 1.38629
9179 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9180 6 3.21631 2.67616 3.25951 0.15939 6 - -
9181 1.38629 1.38629 1.38629 1.38629
9182 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9183 7 3.21631 2.67616 3.25951 0.15939 7 - -
9184 1.38629 1.38629 1.38629 1.38629
9185 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9186 8 3.57612 0.11437 3.61930 2.93201 8 - -
9187 1.38629 1.38629 1.38629 1.38629
9188 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9189 9 0.12648 3.50496 2.88239 3.41868 9 - -
9190 1.38629 1.38629 1.38629 1.38629
9191 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9192 10 0.12648 3.50496 2.88239 3.41868 10 - -
9193 1.38629 1.38629 1.38629 1.38629
9194 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9195 11 3.57612 0.11437 3.61930 2.93201 11 - -
9196 1.38629 1.38629 1.38629 1.38629
9197 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9198 12 3.03265 3.71270 0.10436 3.63069 12 - -
9199 1.38629 1.38629 1.38629 1.38629
9200 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9201 13 0.28094 3.03315 1.94829 2.91416 13 - -
9202 1.38629 1.38629 1.38629 1.38629
9203 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9204 14 3.21631 2.67616 3.25951 0.15939 14 - -
9205 1.38629 1.38629 1.38629 1.38629
9206 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9207 15 3.03265 3.71270 0.10436 3.63069 15 - -
9208 1.38629 1.38629 1.38629 1.38629
9209 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9210 16 3.03265 3.71270 0.10436 3.63069 16 - -
9211 1.38629 1.38629 1.38629 1.38629
9212 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9213 17 0.12648 3.50496 2.88239 3.41868 17 - -
9214 1.38629 1.38629 1.38629 1.38629
9215 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9216 18 3.21631 2.67616 3.25951 0.15939 18 - -
9217 1.38629 1.38629 1.38629 1.38629
9218 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9219 19 0.12648 3.50496 2.88239 3.41868 19 - -
9220 1.38629 1.38629 1.38629 1.38629
9221 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9222 20 3.21631 2.67616 3.25951 0.15939 20 - -
9223 1.38629 1.38629 1.38629 1.38629
9224 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9225 21 3.57612 0.11437 3.61930 2.93201 21 - -
9226 1.38629 1.38629 1.38629 1.38629
9227 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9228 22 3.21631 2.67616 3.25951 0.15939 22 - -
9229 1.38629 1.38629 1.38629 1.38629
9230 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9231 23 2.14675 2.21275 0.89986 1.00208 23 - -
9232 1.38629 1.38629 1.38629 1.38629
9233 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9234 24 3.03265 3.71270 0.10436 3.63069 24 - -
9235 1.38629 1.38629 1.38629 1.38629
9236 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9237 25 3.03265 3.71270 0.10436 3.63069 25 - -
9238 1.38629 1.38629 1.38629 1.38629
9239 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9240 26 2.92927 2.02237 2.98433 0.26965 26 - -
9241 1.38629 1.38629 1.38629 1.38629
9242 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9243 27 3.21631 2.67616 3.25951 0.15939 27 - -
9244 1.38629 1.38629 1.38629 1.38629
9245 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9246 28 3.57612 0.11437 3.61930 2.93201 28 - -
9247 1.38629 1.38629 1.38629 1.38629
9248 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9249 29 3.57612 0.11437 3.61930 2.93201 29 - -
9250 1.38629 1.38629 1.38629 1.38629
9251 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9252 30 3.57612 0.11437 3.61930 2.93201 30 - -
9253 1.38629 1.38629 1.38629 1.38629
9254 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9255 31 0.12648 3.50496 2.88239 3.41868 31 - -
9256 1.38629 1.38629 1.38629 1.38629
9257 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9258 32 3.21631 2.67616 3.25951 0.15939 32 - -
9259 1.38629 1.38629 1.38629 1.38629
9260 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9261 33 0.12648 3.50496 2.88239 3.41868 33 - -
9262 1.38629 1.38629 1.38629 1.38629
9263 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9264 34 0.94678 2.19731 2.21189 0.93798 34 - -
9265 1.38629 1.38629 1.38629 1.38629
9266 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9267 35 3.57612 0.11437 3.61930 2.93201 35 - -
9268 1.38629 1.38629 1.38629 1.38629
9269 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9270 36 3.03265 3.71270 0.10436 3.63069 36 - -
9271 1.38629 1.38629 1.38629 1.38629
9272 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9273 37 0.12648 3.50496 2.88239 3.41868 37 - -
9274 1.38629 1.38629 1.38629 1.38629
9275 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9276 38 3.21631 2.67616 3.25951 0.15939 38 - -
9277 1.38629 1.38629 1.38629 1.38629
9278 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9279 39 3.03265 3.71270 0.10436 3.63069 39 - -
9280 1.38629 1.38629 1.38629 1.38629
9281 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9282 40 0.12648 3.50496 2.88239 3.41868 40 - -
9283 1.38629 1.38629 1.38629 1.38629
9284 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9285 41 0.12648 3.50496 2.88239 3.41868 41 - -
9286 1.38629 1.38629 1.38629 1.38629
9287 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9288 42 3.03265 3.71270 0.10436 3.63069 42 - -
9289 1.38629 1.38629 1.38629 1.38629
9290 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9291 43 0.12648 3.50496 2.88239 3.41868 43 - -
9292 1.38629 1.38629 1.38629 1.38629
9293 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9294 44 0.12648 3.50496 2.88239 3.41868 44 - -
9295 1.38629 1.38629 1.38629 1.38629
9296 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547
9297 45 3.57612 0.11437 3.61930 2.93201 45 - -
9298 1.38629 1.38629 1.38629 1.38629
9299 0.01727 4.06727 * 1.46634 0.26236 0.00000 *
9300 //
9301 HMMER3/b [3.0 | March 2010]
9302 NAME 2_5.8_Alveolata_58S_start_ten_long
9303 LENG 45
9304 ALPH DNA
9305 RF no
9306 CS no
9307 MAP yes
9308 DATE Wed Feb 29 13:27:21 2012
9309 NSEQ 22
9310 EFFN 3.236084
9311 CKSUM 2896313313
9312 STATS LOCAL MSV -8.1273 0.71932
9313 STATS LOCAL VITERBI -7.6160 0.71932
9314 STATS LOCAL FORWARD -3.9033 0.71932
9315 HMM A C G T
9316 m->m m->i m->d i->m i->i d->m d->d
9317 COMPO 1.53686 1.12476 1.25556 1.74127
9318 1.38629 1.38629 1.38629 1.38629
9319 0.03749 3.99564 3.99564 1.46634 0.26236 0.00000 *
9320 1 1.49846 0.59962 2.29674 2.06420 1 - -
9321 1.38629 1.38629 1.38629 1.38629
9322 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9323 2 0.14567 3.35213 2.78361 3.25115 2 - -
9324 1.38629 1.38629 1.38629 1.38629
9325 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9326 3 0.14567 3.35213 2.78361 3.25115 3 - -
9327 1.38629 1.38629 1.38629 1.38629
9328 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9329 4 3.40067 0.13415 3.45149 2.80532 4 - -
9330 1.38629 1.38629 1.38629 1.38629
9331 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9332 5 3.06030 2.57712 3.10954 0.18331 5 - -
9333 1.38629 1.38629 1.38629 1.38629
9334 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9335 6 3.40067 0.13415 3.45149 2.80532 6 - -
9336 1.38629 1.38629 1.38629 1.38629
9337 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9338 7 3.40067 0.13415 3.45149 2.80532 7 - -
9339 1.38629 1.38629 1.38629 1.38629
9340 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9341 8 3.40067 0.13415 3.45149 2.80532 8 - -
9342 1.38629 1.38629 1.38629 1.38629
9343 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9344 9 0.14567 3.35213 2.78361 3.25115 9 - -
9345 1.38629 1.38629 1.38629 1.38629
9346 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9347 10 2.92780 3.55913 0.12034 3.46085 10 - -
9348 1.38629 1.38629 1.38629 1.38629
9349 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9350 11 3.40067 0.13415 3.45149 2.80532 11 - -
9351 1.38629 1.38629 1.38629 1.38629
9352 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9353 12 2.92780 3.55913 0.12034 3.46085 12 - -
9354 1.38629 1.38629 1.38629 1.38629
9355 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9356 13 0.14567 3.35213 2.78361 3.25115 13 - -
9357 1.38629 1.38629 1.38629 1.38629
9358 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9359 14 3.06030 2.57712 3.10954 0.18331 14 - -
9360 1.38629 1.38629 1.38629 1.38629
9361 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9362 15 2.92780 3.55913 0.12034 3.46085 15 - -
9363 1.38629 1.38629 1.38629 1.38629
9364 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9365 16 2.92780 3.55913 0.12034 3.46085 16 - -
9366 1.38629 1.38629 1.38629 1.38629
9367 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9368 17 0.14567 3.35213 2.78361 3.25115 17 - -
9369 1.38629 1.38629 1.38629 1.38629
9370 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9371 18 3.06030 2.57712 3.10954 0.18331 18 - -
9372 1.38629 1.38629 1.38629 1.38629
9373 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9374 19 2.92780 3.55913 0.12034 3.46085 19 - -
9375 1.38629 1.38629 1.38629 1.38629
9376 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9377 20 3.40067 0.13415 3.45149 2.80532 20 - -
9378 1.38629 1.38629 1.38629 1.38629
9379 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9380 21 3.40067 0.13415 3.45149 2.80532 21 - -
9381 1.38629 1.38629 1.38629 1.38629
9382 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9383 22 3.06030 2.57712 3.10954 0.18331 22 - -
9384 1.38629 1.38629 1.38629 1.38629
9385 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9386 23 3.40067 0.13415 3.45149 2.80532 23 - -
9387 1.38629 1.38629 1.38629 1.38629
9388 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9389 24 2.92780 3.55913 0.12034 3.46085 24 - -
9390 1.38629 1.38629 1.38629 1.38629
9391 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9392 25 2.92780 3.55913 0.12034 3.46085 25 - -
9393 1.38629 1.38629 1.38629 1.38629
9394 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9395 26 3.40067 0.13415 3.45149 2.80532 26 - -
9396 1.38629 1.38629 1.38629 1.38629
9397 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9398 27 3.06030 2.57712 3.10954 0.18331 27 - -
9399 1.38629 1.38629 1.38629 1.38629
9400 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9401 28 3.40067 0.13415 3.45149 2.80532 28 - -
9402 1.38629 1.38629 1.38629 1.38629
9403 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9404 29 2.92780 3.55913 0.12034 3.46085 29 - -
9405 1.38629 1.38629 1.38629 1.38629
9406 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9407 30 3.40067 0.13415 3.45149 2.80532 30 - -
9408 1.38629 1.38629 1.38629 1.38629
9409 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9410 31 2.92780 3.55913 0.12034 3.46085 31 - -
9411 1.38629 1.38629 1.38629 1.38629
9412 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9413 32 3.40067 0.13415 3.45149 2.80532 32 - -
9414 1.38629 1.38629 1.38629 1.38629
9415 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9416 33 3.40067 0.13415 3.45149 2.80532 33 - -
9417 1.38629 1.38629 1.38629 1.38629
9418 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9419 34 3.06030 2.57712 3.10954 0.18331 34 - -
9420 1.38629 1.38629 1.38629 1.38629
9421 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9422 35 3.40067 0.13415 3.45149 2.80532 35 - -
9423 1.38629 1.38629 1.38629 1.38629
9424 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9425 36 2.92780 3.55913 0.12034 3.46085 36 - -
9426 1.38629 1.38629 1.38629 1.38629
9427 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9428 37 0.14567 3.35213 2.78361 3.25115 37 - -
9429 1.38629 1.38629 1.38629 1.38629
9430 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9431 38 3.06030 2.57712 3.10954 0.18331 38 - -
9432 1.38629 1.38629 1.38629 1.38629
9433 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9434 39 2.92780 3.55913 0.12034 3.46085 39 - -
9435 1.38629 1.38629 1.38629 1.38629
9436 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9437 40 0.14567 3.35213 2.78361 3.25115 40 - -
9438 1.38629 1.38629 1.38629 1.38629
9439 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9440 41 0.14567 3.35213 2.78361 3.25115 41 - -
9441 1.38629 1.38629 1.38629 1.38629
9442 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9443 42 2.92780 3.55913 0.12034 3.46085 42 - -
9444 1.38629 1.38629 1.38629 1.38629
9445 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9446 43 2.92780 3.55913 0.12034 3.46085 43 - -
9447 1.38629 1.38629 1.38629 1.38629
9448 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9449 44 0.14567 3.35213 2.78361 3.25115 44 - -
9450 1.38629 1.38629 1.38629 1.38629
9451 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547
9452 45 3.40067 0.13415 3.45149 2.80532 45 - -
9453 1.38629 1.38629 1.38629 1.38629
9454 0.01892 3.97708 * 1.46634 0.26236 0.00000 *
9455 //
9456 HMMER3/b [3.0 | March 2010]
9457 NAME 2_5.8_Alveolata_58S_start_thirteen_long
9458 LENG 45
9459 ALPH DNA
9460 RF no
9461 CS no
9462 MAP yes
9463 DATE Wed Feb 29 13:28:05 2012
9464 NSEQ 8
9465 EFFN 3.175781
9466 CKSUM 2342198515
9467 STATS LOCAL MSV -8.1781 0.71931
9468 STATS LOCAL VITERBI -7.7853 0.71931
9469 STATS LOCAL FORWARD -4.2608 0.71931
9470 HMM A C G T
9471 m->m m->i m->d i->m i->i d->m d->d
9472 COMPO 1.21574 1.40301 1.31193 1.66943
9473 1.38629 1.38629 1.38629 1.38629
9474 0.03791 3.98449 3.98449 1.46634 0.26236 0.00000 *
9475 1 0.14843 3.33206 2.77050 3.22920 1 - -
9476 1.38629 1.38629 1.38629 1.38629
9477 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9478 2 0.14843 3.33206 2.77050 3.22920 2 - -
9479 1.38629 1.38629 1.38629 1.38629
9480 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9481 3 0.14843 3.33206 2.77050 3.22920 3 - -
9482 1.38629 1.38629 1.38629 1.38629
9483 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9484 4 3.37748 0.13704 3.42926 2.78832 4 - -
9485 1.38629 1.38629 1.38629 1.38629
9486 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9487 5 3.04021 2.56430 3.09020 0.18668 5 - -
9488 1.38629 1.38629 1.38629 1.38629
9489 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9490 6 3.37748 0.13704 3.42926 2.78832 6 - -
9491 1.38629 1.38629 1.38629 1.38629
9492 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9493 7 3.04021 2.56430 3.09020 0.18668 7 - -
9494 1.38629 1.38629 1.38629 1.38629
9495 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9496 8 3.37748 0.13704 3.42926 2.78832 8 - -
9497 1.38629 1.38629 1.38629 1.38629
9498 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9499 9 0.14843 3.33206 2.77050 3.22920 9 - -
9500 1.38629 1.38629 1.38629 1.38629
9501 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9502 10 0.14843 3.33206 2.77050 3.22920 10 - -
9503 1.38629 1.38629 1.38629 1.38629
9504 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9505 11 3.37748 0.13704 3.42926 2.78832 11 - -
9506 1.38629 1.38629 1.38629 1.38629
9507 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9508 12 2.91360 3.53861 0.12268 3.43825 12 - -
9509 1.38629 1.38629 1.38629 1.38629
9510 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9511 13 0.14843 3.33206 2.77050 3.22920 13 - -
9512 1.38629 1.38629 1.38629 1.38629
9513 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9514 14 3.04021 2.56430 3.09020 0.18668 14 - -
9515 1.38629 1.38629 1.38629 1.38629
9516 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9517 15 2.91360 3.53861 0.12268 3.43825 15 - -
9518 1.38629 1.38629 1.38629 1.38629
9519 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9520 16 2.91360 3.53861 0.12268 3.43825 16 - -
9521 1.38629 1.38629 1.38629 1.38629
9522 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9523 17 0.14843 3.33206 2.77050 3.22920 17 - -
9524 1.38629 1.38629 1.38629 1.38629
9525 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9526 18 3.04021 2.56430 3.09020 0.18668 18 - -
9527 1.38629 1.38629 1.38629 1.38629
9528 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9529 19 2.91360 3.53861 0.12268 3.43825 19 - -
9530 1.38629 1.38629 1.38629 1.38629
9531 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9532 20 3.37748 0.13704 3.42926 2.78832 20 - -
9533 1.38629 1.38629 1.38629 1.38629
9534 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9535 21 3.37748 0.13704 3.42926 2.78832 21 - -
9536 1.38629 1.38629 1.38629 1.38629
9537 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9538 22 3.04021 2.56430 3.09020 0.18668 22 - -
9539 1.38629 1.38629 1.38629 1.38629
9540 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9541 23 3.37748 0.13704 3.42926 2.78832 23 - -
9542 1.38629 1.38629 1.38629 1.38629
9543 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9544 24 2.91360 3.53861 0.12268 3.43825 24 - -
9545 1.38629 1.38629 1.38629 1.38629
9546 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9547 25 2.91360 3.53861 0.12268 3.43825 25 - -
9548 1.38629 1.38629 1.38629 1.38629
9549 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9550 26 3.37748 0.13704 3.42926 2.78832 26 - -
9551 1.38629 1.38629 1.38629 1.38629
9552 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9553 27 3.04021 2.56430 3.09020 0.18668 27 - -
9554 1.38629 1.38629 1.38629 1.38629
9555 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9556 28 3.37748 0.13704 3.42926 2.78832 28 - -
9557 1.38629 1.38629 1.38629 1.38629
9558 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9559 29 2.91360 3.53861 0.12268 3.43825 29 - -
9560 1.38629 1.38629 1.38629 1.38629
9561 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9562 30 0.14843 3.33206 2.77050 3.22920 30 - -
9563 1.38629 1.38629 1.38629 1.38629
9564 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9565 31 2.91360 3.53861 0.12268 3.43825 31 - -
9566 1.38629 1.38629 1.38629 1.38629
9567 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9568 32 0.14843 3.33206 2.77050 3.22920 32 - -
9569 1.38629 1.38629 1.38629 1.38629
9570 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9571 33 0.14843 3.33206 2.77050 3.22920 33 - -
9572 1.38629 1.38629 1.38629 1.38629
9573 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9574 34 3.04021 2.56430 3.09020 0.18668 34 - -
9575 1.38629 1.38629 1.38629 1.38629
9576 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9577 35 3.37748 0.13704 3.42926 2.78832 35 - -
9578 1.38629 1.38629 1.38629 1.38629
9579 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9580 36 2.91360 3.53861 0.12268 3.43825 36 - -
9581 1.38629 1.38629 1.38629 1.38629
9582 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9583 37 0.14843 3.33206 2.77050 3.22920 37 - -
9584 1.38629 1.38629 1.38629 1.38629
9585 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9586 38 3.04021 2.56430 3.09020 0.18668 38 - -
9587 1.38629 1.38629 1.38629 1.38629
9588 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9589 39 2.91360 3.53861 0.12268 3.43825 39 - -
9590 1.38629 1.38629 1.38629 1.38629
9591 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9592 40 0.14843 3.33206 2.77050 3.22920 40 - -
9593 1.38629 1.38629 1.38629 1.38629
9594 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9595 41 0.14843 3.33206 2.77050 3.22920 41 - -
9596 1.38629 1.38629 1.38629 1.38629
9597 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9598 42 2.91360 3.53861 0.12268 3.43825 42 - -
9599 1.38629 1.38629 1.38629 1.38629
9600 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9601 43 2.91360 3.53861 0.12268 3.43825 43 - -
9602 1.38629 1.38629 1.38629 1.38629
9603 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9604 44 0.14843 3.33206 2.77050 3.22920 44 - -
9605 1.38629 1.38629 1.38629 1.38629
9606 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
9607 45 3.37748 0.13704 3.42926 2.78832 45 - -
9608 1.38629 1.38629 1.38629 1.38629
9609 0.01914 3.96571 * 1.46634 0.26236 0.00000 *
9610 //
9611 HMMER3/b [3.0 | March 2010]
9612 NAME 2_5.8_Alveolata_58S_start_three_long
9613 LENG 45
9614 ALPH DNA
9615 RF no
9616 CS no
9617 MAP yes
9618 DATE Wed Feb 29 13:26:06 2012
9619 NSEQ 6
9620 EFFN 3.249023
9621 CKSUM 954103482
9622 STATS LOCAL MSV -8.0739 0.71932
9623 STATS LOCAL VITERBI -7.8238 0.71932
9624 STATS LOCAL FORWARD -4.1109 0.71932
9625 HMM A C G T
9626 m->m m->i m->d i->m i->i d->m d->d
9627 COMPO 1.47195 1.61868 1.19247 1.31344
9628 1.38629 1.38629 1.38629 1.38629
9629 0.03739 3.99802 3.99802 1.46634 0.26236 0.00000 *
9630 1 3.06457 2.57984 3.11364 0.18260 1 - -
9631 1.38629 1.38629 1.38629 1.38629
9632 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9633 2 3.06457 2.57984 3.11364 0.18260 2 - -
9634 1.38629 1.38629 1.38629 1.38629
9635 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9636 3 2.93080 3.56347 0.11985 3.46564 3 - -
9637 1.38629 1.38629 1.38629 1.38629
9638 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9639 4 3.40558 0.13354 3.45619 2.80891 4 - -
9640 1.38629 1.38629 1.38629 1.38629
9641 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9642 5 3.06457 2.57984 3.11364 0.18260 5 - -
9643 1.38629 1.38629 1.38629 1.38629
9644 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9645 6 3.06457 2.57984 3.11364 0.18260 6 - -
9646 1.38629 1.38629 1.38629 1.38629
9647 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9648 7 3.06457 2.57984 3.11364 0.18260 7 - -
9649 1.38629 1.38629 1.38629 1.38629
9650 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9651 8 3.40558 0.13354 3.45619 2.80891 8 - -
9652 1.38629 1.38629 1.38629 1.38629
9653 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9654 9 0.14509 3.35639 2.78639 3.25580 9 - -
9655 1.38629 1.38629 1.38629 1.38629
9656 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9657 10 2.93080 3.56347 0.11985 3.46564 10 - -
9658 1.38629 1.38629 1.38629 1.38629
9659 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9660 11 3.40558 0.13354 3.45619 2.80891 11 - -
9661 1.38629 1.38629 1.38629 1.38629
9662 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9663 12 2.93080 3.56347 0.11985 3.46564 12 - -
9664 1.38629 1.38629 1.38629 1.38629
9665 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9666 13 0.14509 3.35639 2.78639 3.25580 13 - -
9667 1.38629 1.38629 1.38629 1.38629
9668 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9669 14 3.06457 2.57984 3.11364 0.18260 14 - -
9670 1.38629 1.38629 1.38629 1.38629
9671 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9672 15 2.93080 3.56347 0.11985 3.46564 15 - -
9673 1.38629 1.38629 1.38629 1.38629
9674 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9675 16 2.93080 3.56347 0.11985 3.46564 16 - -
9676 1.38629 1.38629 1.38629 1.38629
9677 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9678 17 0.14509 3.35639 2.78639 3.25580 17 - -
9679 1.38629 1.38629 1.38629 1.38629
9680 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9681 18 3.06457 2.57984 3.11364 0.18260 18 - -
9682 1.38629 1.38629 1.38629 1.38629
9683 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9684 19 2.93080 3.56347 0.11985 3.46564 19 - -
9685 1.38629 1.38629 1.38629 1.38629
9686 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9687 20 3.06457 2.57984 3.11364 0.18260 20 - -
9688 1.38629 1.38629 1.38629 1.38629
9689 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9690 21 3.40558 0.13354 3.45619 2.80891 21 - -
9691 1.38629 1.38629 1.38629 1.38629
9692 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9693 22 3.06457 2.57984 3.11364 0.18260 22 - -
9694 1.38629 1.38629 1.38629 1.38629
9695 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9696 23 3.06457 2.57984 3.11364 0.18260 23 - -
9697 1.38629 1.38629 1.38629 1.38629
9698 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9699 24 2.93080 3.56347 0.11985 3.46564 24 - -
9700 1.38629 1.38629 1.38629 1.38629
9701 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9702 25 2.93080 3.56347 0.11985 3.46564 25 - -
9703 1.38629 1.38629 1.38629 1.38629
9704 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9705 26 3.40558 0.13354 3.45619 2.80891 26 - -
9706 1.38629 1.38629 1.38629 1.38629
9707 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9708 27 3.06457 2.57984 3.11364 0.18260 27 - -
9709 1.38629 1.38629 1.38629 1.38629
9710 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9711 28 3.40558 0.13354 3.45619 2.80891 28 - -
9712 1.38629 1.38629 1.38629 1.38629
9713 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9714 29 2.93080 3.56347 0.11985 3.46564 29 - -
9715 1.38629 1.38629 1.38629 1.38629
9716 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9717 30 0.14509 3.35639 2.78639 3.25580 30 - -
9718 1.38629 1.38629 1.38629 1.38629
9719 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9720 31 0.14509 3.35639 2.78639 3.25580 31 - -
9721 1.38629 1.38629 1.38629 1.38629
9722 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9723 32 3.40558 0.13354 3.45619 2.80891 32 - -
9724 1.38629 1.38629 1.38629 1.38629
9725 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9726 33 0.14509 3.35639 2.78639 3.25580 33 - -
9727 1.38629 1.38629 1.38629 1.38629
9728 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9729 34 0.14509 3.35639 2.78639 3.25580 34 - -
9730 1.38629 1.38629 1.38629 1.38629
9731 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9732 35 3.06457 2.57984 3.11364 0.18260 35 - -
9733 1.38629 1.38629 1.38629 1.38629
9734 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9735 36 2.93080 3.56347 0.11985 3.46564 36 - -
9736 1.38629 1.38629 1.38629 1.38629
9737 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9738 37 0.14509 3.35639 2.78639 3.25580 37 - -
9739 1.38629 1.38629 1.38629 1.38629
9740 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9741 38 3.06457 2.57984 3.11364 0.18260 38 - -
9742 1.38629 1.38629 1.38629 1.38629
9743 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9744 39 2.93080 3.56347 0.11985 3.46564 39 - -
9745 1.38629 1.38629 1.38629 1.38629
9746 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9747 40 0.14509 3.35639 2.78639 3.25580 40 - -
9748 1.38629 1.38629 1.38629 1.38629
9749 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9750 41 0.14509 3.35639 2.78639 3.25580 41 - -
9751 1.38629 1.38629 1.38629 1.38629
9752 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9753 42 2.93080 3.56347 0.11985 3.46564 42 - -
9754 1.38629 1.38629 1.38629 1.38629
9755 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9756 43 2.93080 3.56347 0.11985 3.46564 43 - -
9757 1.38629 1.38629 1.38629 1.38629
9758 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9759 44 2.93080 3.56347 0.11985 3.46564 44 - -
9760 1.38629 1.38629 1.38629 1.38629
9761 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547
9762 45 3.40558 0.13354 3.45619 2.80891 45 - -
9763 1.38629 1.38629 1.38629 1.38629
9764 0.01887 3.97950 * 1.46634 0.26236 0.00000 *
9765 //
9766 HMMER3/b [3.0 | March 2010]
9767 NAME 2_5.8_Alveolata_58S_start_twelve_long
9768 LENG 45
9769 ALPH DNA
9770 RF no
9771 CS no
9772 MAP yes
9773 DATE Wed Feb 29 13:27:55 2012
9774 NSEQ 74
9775 EFFN 3.410034
9776 CKSUM 388750452
9777 STATS LOCAL MSV -7.4871 0.71933
9778 STATS LOCAL VITERBI -7.6504 0.71933
9779 STATS LOCAL FORWARD -4.1874 0.71933
9780 HMM A C G T
9781 m->m m->i m->d i->m i->i d->m d->d
9782 COMPO 1.28425 1.46318 1.36431 1.44356
9783 1.38629 1.38629 1.38629 1.38629
9784 0.03630 4.02714 4.02714 1.46634 0.26236 0.00000 *
9785 1 0.13831 3.40783 2.81980 3.31211 1 - -
9786 1.38629 1.38629 1.38629 1.38629
9787 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9788 2 0.13831 3.40783 2.81980 3.31211 2 - -
9789 1.38629 1.38629 1.38629 1.38629
9790 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9791 3 0.13831 3.40783 2.81980 3.31211 3 - -
9792 1.38629 1.38629 1.38629 1.38629
9793 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9794 4 3.25133 0.17525 3.30615 2.46070 4 - -
9795 1.38629 1.38629 1.38629 1.38629
9796 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9797 5 3.11652 2.61288 3.16360 0.17424 5 - -
9798 1.38629 1.38629 1.38629 1.38629
9799 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9800 6 3.11652 2.61288 3.16360 0.17424 6 - -
9801 1.38629 1.38629 1.38629 1.38629
9802 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9803 7 3.11652 2.61288 3.16360 0.17424 7 - -
9804 1.38629 1.38629 1.38629 1.38629
9805 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9806 8 3.46484 0.12649 3.51294 2.85204 8 - -
9807 1.38629 1.38629 1.38629 1.38629
9808 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9809 9 0.13831 3.40783 2.81980 3.31211 9 - -
9810 1.38629 1.38629 1.38629 1.38629
9811 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9812 10 2.96666 3.61565 0.11415 3.52323 10 - -
9813 1.38629 1.38629 1.38629 1.38629
9814 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9815 11 3.46484 0.12649 3.51294 2.85204 11 - -
9816 1.38629 1.38629 1.38629 1.38629
9817 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9818 12 0.13831 3.40783 2.81980 3.31211 12 - -
9819 1.38629 1.38629 1.38629 1.38629
9820 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9821 13 0.13831 3.40783 2.81980 3.31211 13 - -
9822 1.38629 1.38629 1.38629 1.38629
9823 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9824 14 3.11652 2.61288 3.16360 0.17424 14 - -
9825 1.38629 1.38629 1.38629 1.38629
9826 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9827 15 2.96666 3.61565 0.11415 3.52323 15 - -
9828 1.38629 1.38629 1.38629 1.38629
9829 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9830 16 2.96666 3.61565 0.11415 3.52323 16 - -
9831 1.38629 1.38629 1.38629 1.38629
9832 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9833 17 0.13831 3.40783 2.81980 3.31211 17 - -
9834 1.38629 1.38629 1.38629 1.38629
9835 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9836 18 3.11652 2.61288 3.16360 0.17424 18 - -
9837 1.38629 1.38629 1.38629 1.38629
9838 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9839 19 2.96666 3.61565 0.11415 3.52323 19 - -
9840 1.38629 1.38629 1.38629 1.38629
9841 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9842 20 3.11652 2.61288 3.16360 0.17424 20 - -
9843 1.38629 1.38629 1.38629 1.38629
9844 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9845 21 3.46484 0.12649 3.51294 2.85204 21 - -
9846 1.38629 1.38629 1.38629 1.38629
9847 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9848 22 3.11652 2.61288 3.16360 0.17424 22 - -
9849 1.38629 1.38629 1.38629 1.38629
9850 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9851 23 3.11652 2.61288 3.16360 0.17424 23 - -
9852 1.38629 1.38629 1.38629 1.38629
9853 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9854 24 2.96666 3.61565 0.11415 3.52323 24 - -
9855 1.38629 1.38629 1.38629 1.38629
9856 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9857 25 2.96666 3.61565 0.11415 3.52323 25 - -
9858 1.38629 1.38629 1.38629 1.38629
9859 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9860 26 3.46484 0.12649 3.51294 2.85204 26 - -
9861 1.38629 1.38629 1.38629 1.38629
9862 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9863 27 3.11652 2.61288 3.16360 0.17424 27 - -
9864 1.38629 1.38629 1.38629 1.38629
9865 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9866 28 3.46484 0.12649 3.51294 2.85204 28 - -
9867 1.38629 1.38629 1.38629 1.38629
9868 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9869 29 0.41203 2.75544 1.60231 2.62160 29 - -
9870 1.38629 1.38629 1.38629 1.38629
9871 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9872 30 3.46484 0.12649 3.51294 2.85204 30 - -
9873 1.38629 1.38629 1.38629 1.38629
9874 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9875 31 2.96666 3.61565 0.11415 3.52323 31 - -
9876 1.38629 1.38629 1.38629 1.38629
9877 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9878 32 3.46484 0.12649 3.51294 2.85204 32 - -
9879 1.38629 1.38629 1.38629 1.38629
9880 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9881 33 0.13831 3.40783 2.81980 3.31211 33 - -
9882 1.38629 1.38629 1.38629 1.38629
9883 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9884 34 2.31167 2.32835 2.73359 0.30319 34 - -
9885 1.38629 1.38629 1.38629 1.38629
9886 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9887 35 3.46484 0.12649 3.51294 2.85204 35 - -
9888 1.38629 1.38629 1.38629 1.38629
9889 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9890 36 2.96666 3.61565 0.11415 3.52323 36 - -
9891 1.38629 1.38629 1.38629 1.38629
9892 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9893 37 0.16646 3.30237 2.57918 3.20130 37 - -
9894 1.38629 1.38629 1.38629 1.38629
9895 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9896 38 3.11652 2.61288 3.16360 0.17424 38 - -
9897 1.38629 1.38629 1.38629 1.38629
9898 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9899 39 2.96666 3.61565 0.11415 3.52323 39 - -
9900 1.38629 1.38629 1.38629 1.38629
9901 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9902 40 0.13831 3.40783 2.81980 3.31211 40 - -
9903 1.38629 1.38629 1.38629 1.38629
9904 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9905 41 0.13831 3.40783 2.81980 3.31211 41 - -
9906 1.38629 1.38629 1.38629 1.38629
9907 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9908 42 2.96666 3.61565 0.11415 3.52323 42 - -
9909 1.38629 1.38629 1.38629 1.38629
9910 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9911 43 2.96666 3.61565 0.11415 3.52323 43 - -
9912 1.38629 1.38629 1.38629 1.38629
9913 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9914 44 0.13831 3.40783 2.81980 3.31211 44 - -
9915 1.38629 1.38629 1.38629 1.38629
9916 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547
9917 45 3.46484 0.12649 3.51294 2.85204 45 - -
9918 1.38629 1.38629 1.38629 1.38629
9919 0.01832 4.00916 * 1.46634 0.26236 0.00000 *
9920 //
9921 HMMER3/b [3.0 | March 2010]
9922 NAME 2_5.8_Alveolata_58S_start_twoa_long
9923 LENG 45
9924 ALPH DNA
9925 RF no
9926 CS no
9927 MAP yes
9928 DATE Wed Feb 29 13:25:36 2012
9929 NSEQ 24
9930 EFFN 3.858398
9931 CKSUM 3088050842
9932 STATS LOCAL MSV -7.0905 0.71932
9933 STATS LOCAL VITERBI -7.7638 0.71932
9934 STATS LOCAL FORWARD -3.7065 0.71932
9935 HMM A C G T
9936 m->m m->i m->d i->m i->i d->m d->d
9937 COMPO 1.35209 1.39088 1.23234 1.60528
9938 1.38629 1.38629 1.38629 1.38629
9939 0.03357 4.10403 4.10403 1.46634 0.26236 0.00000 *
9940 1 3.61308 0.11065 3.65457 2.95832 1 - -
9941 1.38629 1.38629 1.38629 1.38629
9942 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9943 2 0.12278 3.53742 2.90323 3.45435 2 - -
9944 1.38629 1.38629 1.38629 1.38629
9945 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9946 3 0.12278 3.53742 2.90323 3.45435 3 - -
9947 1.38629 1.38629 1.38629 1.38629
9948 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9949 4 2.85962 0.34778 2.92534 1.69931 4 - -
9950 1.38629 1.38629 1.38629 1.38629
9951 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9952 5 3.02517 2.16151 3.07670 0.23548 5 - -
9953 1.38629 1.38629 1.38629 1.38629
9954 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9955 6 3.25017 2.69764 3.29205 0.15468 6 - -
9956 1.38629 1.38629 1.38629 1.38629
9957 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9958 7 3.25017 2.69764 3.29205 0.15468 7 - -
9959 1.38629 1.38629 1.38629 1.38629
9960 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9961 8 3.61308 0.11065 3.65457 2.95832 8 - -
9962 1.38629 1.38629 1.38629 1.38629
9963 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9964 9 0.12278 3.53742 2.90323 3.45435 9 - -
9965 1.38629 1.38629 1.38629 1.38629
9966 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9967 10 3.05426 3.74470 0.10134 3.66619 10 - -
9968 1.38629 1.38629 1.38629 1.38629
9969 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9970 11 3.61308 0.11065 3.65457 2.95832 11 - -
9971 1.38629 1.38629 1.38629 1.38629
9972 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9973 12 3.05426 3.74470 0.10134 3.66619 12 - -
9974 1.38629 1.38629 1.38629 1.38629
9975 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9976 13 0.12278 3.53742 2.90323 3.45435 13 - -
9977 1.38629 1.38629 1.38629 1.38629
9978 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9979 14 2.56518 1.23160 2.63342 0.58082 14 - -
9980 1.38629 1.38629 1.38629 1.38629
9981 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9982 15 3.05426 3.74470 0.10134 3.66619 15 - -
9983 1.38629 1.38629 1.38629 1.38629
9984 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9985 16 3.05426 3.74470 0.10134 3.66619 16 - -
9986 1.38629 1.38629 1.38629 1.38629
9987 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9988 17 0.12278 3.53742 2.90323 3.45435 17 - -
9989 1.38629 1.38629 1.38629 1.38629
9990 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9991 18 3.25017 2.69764 3.29205 0.15468 18 - -
9992 1.38629 1.38629 1.38629 1.38629
9993 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9994 19 3.05426 3.74470 0.10134 3.66619 19 - -
9995 1.38629 1.38629 1.38629 1.38629
9996 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
9997 20 2.87164 1.85703 2.92932 0.30948 20 - -
9998 1.38629 1.38629 1.38629 1.38629
9999 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10000 21 3.61308 0.11065 3.65457 2.95832 21 - -
10001 1.38629 1.38629 1.38629 1.38629
10002 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10003 22 3.25017 2.69764 3.29205 0.15468 22 - -
10004 1.38629 1.38629 1.38629 1.38629
10005 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10006 23 3.61308 0.11065 3.65457 2.95832 23 - -
10007 1.38629 1.38629 1.38629 1.38629
10008 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10009 24 3.05426 3.74470 0.10134 3.66619 24 - -
10010 1.38629 1.38629 1.38629 1.38629
10011 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10012 25 3.05426 3.74470 0.10134 3.66619 25 - -
10013 1.38629 1.38629 1.38629 1.38629
10014 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10015 26 3.38961 0.15768 3.43962 2.52474 26 - -
10016 1.38629 1.38629 1.38629 1.38629
10017 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10018 27 3.25017 2.69764 3.29205 0.15468 27 - -
10019 1.38629 1.38629 1.38629 1.38629
10020 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10021 28 2.98238 0.28720 3.04518 1.88795 28 - -
10022 1.38629 1.38629 1.38629 1.38629
10023 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10024 29 2.20598 2.99459 0.26627 2.60951 29 - -
10025 1.38629 1.38629 1.38629 1.38629
10026 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10027 30 0.63005 2.64466 1.15619 2.50444 30 - -
10028 1.38629 1.38629 1.38629 1.38629
10029 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10030 31 0.20489 3.24864 2.26976 3.14424 31 - -
10031 1.38629 1.38629 1.38629 1.38629
10032 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10033 32 3.61308 0.11065 3.65457 2.95832 32 - -
10034 1.38629 1.38629 1.38629 1.38629
10035 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10036 33 0.12278 3.53742 2.90323 3.45435 33 - -
10037 1.38629 1.38629 1.38629 1.38629
10038 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10039 34 0.12278 3.53742 2.90323 3.45435 34 - -
10040 1.38629 1.38629 1.38629 1.38629
10041 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10042 35 3.61308 0.11065 3.65457 2.95832 35 - -
10043 1.38629 1.38629 1.38629 1.38629
10044 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10045 36 2.69512 3.58668 0.13413 3.49662 36 - -
10046 1.38629 1.38629 1.38629 1.38629
10047 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10048 37 0.12278 3.53742 2.90323 3.45435 37 - -
10049 1.38629 1.38629 1.38629 1.38629
10050 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10051 38 3.25017 2.69764 3.29205 0.15468 38 - -
10052 1.38629 1.38629 1.38629 1.38629
10053 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10054 39 3.05426 3.74470 0.10134 3.66619 39 - -
10055 1.38629 1.38629 1.38629 1.38629
10056 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10057 40 0.12278 3.53742 2.90323 3.45435 40 - -
10058 1.38629 1.38629 1.38629 1.38629
10059 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10060 41 0.12278 3.53742 2.90323 3.45435 41 - -
10061 1.38629 1.38629 1.38629 1.38629
10062 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10063 42 3.05426 3.74470 0.10134 3.66619 42 - -
10064 1.38629 1.38629 1.38629 1.38629
10065 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10066 43 3.05426 3.74470 0.10134 3.66619 43 - -
10067 1.38629 1.38629 1.38629 1.38629
10068 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10069 44 3.05426 3.74470 0.10134 3.66619 44 - -
10070 1.38629 1.38629 1.38629 1.38629
10071 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547
10072 45 3.61308 0.11065 3.65457 2.95832 45 - -
10073 1.38629 1.38629 1.38629 1.38629
10074 0.01693 4.08739 * 1.46634 0.26236 0.00000 *
10075 //
10076 HMMER3/b [3.0 | March 2010]
10077 NAME 2_5.8_Alveolata_58S_start_twob_long
10078 LENG 45
10079 ALPH DNA
10080 RF no
10081 CS no
10082 MAP yes
10083 DATE Wed Feb 29 13:25:43 2012
10084 NSEQ 8
10085 EFFN 3.222656
10086 CKSUM 2547926137
10087 STATS LOCAL MSV -7.7534 0.71932
10088 STATS LOCAL VITERBI -7.7335 0.71932
10089 STATS LOCAL FORWARD -4.0829 0.71932
10090 HMM A C G T
10091 m->m m->i m->d i->m i->i d->m d->d
10092 COMPO 1.40323 1.39104 1.31591 1.43906
10093 1.38629 1.38629 1.38629 1.38629
10094 0.03758 3.99317 3.99317 1.46634 0.26236 0.00000 *
10095 1 3.39555 0.13478 3.44658 2.80157 1 - -
10096 1.38629 1.38629 1.38629 1.38629
10097 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10098 2 0.14627 3.34770 2.78072 3.24630 2 - -
10099 1.38629 1.38629 1.38629 1.38629
10100 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10101 3 0.14627 3.34770 2.78072 3.24630 3 - -
10102 1.38629 1.38629 1.38629 1.38629
10103 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10104 4 3.05586 2.57429 3.10526 0.18405 4 - -
10105 1.38629 1.38629 1.38629 1.38629
10106 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10107 5 3.05586 2.57429 3.10526 0.18405 5 - -
10108 1.38629 1.38629 1.38629 1.38629
10109 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10110 6 3.05586 2.57429 3.10526 0.18405 6 - -
10111 1.38629 1.38629 1.38629 1.38629
10112 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10113 7 3.05586 2.57429 3.10526 0.18405 7 - -
10114 1.38629 1.38629 1.38629 1.38629
10115 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10116 8 3.39555 0.13478 3.44658 2.80157 8 - -
10117 1.38629 1.38629 1.38629 1.38629
10118 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10119 9 0.14627 3.34770 2.78072 3.24630 9 - -
10120 1.38629 1.38629 1.38629 1.38629
10121 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10122 10 2.92468 3.55461 0.12085 3.45586 10 - -
10123 1.38629 1.38629 1.38629 1.38629
10124 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10125 11 3.39555 0.13478 3.44658 2.80157 11 - -
10126 1.38629 1.38629 1.38629 1.38629
10127 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10128 12 2.92468 3.55461 0.12085 3.45586 12 - -
10129 1.38629 1.38629 1.38629 1.38629
10130 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10131 13 0.14627 3.34770 2.78072 3.24630 13 - -
10132 1.38629 1.38629 1.38629 1.38629
10133 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10134 14 3.39555 0.13478 3.44658 2.80157 14 - -
10135 1.38629 1.38629 1.38629 1.38629
10136 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10137 15 2.92468 3.55461 0.12085 3.45586 15 - -
10138 1.38629 1.38629 1.38629 1.38629
10139 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10140 16 2.92468 3.55461 0.12085 3.45586 16 - -
10141 1.38629 1.38629 1.38629 1.38629
10142 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10143 17 0.14627 3.34770 2.78072 3.24630 17 - -
10144 1.38629 1.38629 1.38629 1.38629
10145 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10146 18 3.05586 2.57429 3.10526 0.18405 18 - -
10147 1.38629 1.38629 1.38629 1.38629
10148 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10149 19 0.14627 3.34770 2.78072 3.24630 19 - -
10150 1.38629 1.38629 1.38629 1.38629
10151 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10152 20 3.05586 2.57429 3.10526 0.18405 20 - -
10153 1.38629 1.38629 1.38629 1.38629
10154 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10155 21 3.39555 0.13478 3.44658 2.80157 21 - -
10156 1.38629 1.38629 1.38629 1.38629
10157 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10158 22 3.05586 2.57429 3.10526 0.18405 22 - -
10159 1.38629 1.38629 1.38629 1.38629
10160 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10161 23 3.05586 2.57429 3.10526 0.18405 23 - -
10162 1.38629 1.38629 1.38629 1.38629
10163 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10164 24 2.92468 3.55461 0.12085 3.45586 24 - -
10165 1.38629 1.38629 1.38629 1.38629
10166 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10167 25 2.92468 3.55461 0.12085 3.45586 25 - -
10168 1.38629 1.38629 1.38629 1.38629
10169 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10170 26 3.39555 0.13478 3.44658 2.80157 26 - -
10171 1.38629 1.38629 1.38629 1.38629
10172 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10173 27 3.05586 2.57429 3.10526 0.18405 27 - -
10174 1.38629 1.38629 1.38629 1.38629
10175 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10176 28 3.39555 0.13478 3.44658 2.80157 28 - -
10177 1.38629 1.38629 1.38629 1.38629
10178 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10179 29 2.92468 3.55461 0.12085 3.45586 29 - -
10180 1.38629 1.38629 1.38629 1.38629
10181 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10182 30 0.14627 3.34770 2.78072 3.24630 30 - -
10183 1.38629 1.38629 1.38629 1.38629
10184 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10185 31 2.92468 3.55461 0.12085 3.45586 31 - -
10186 1.38629 1.38629 1.38629 1.38629
10187 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10188 32 3.39555 0.13478 3.44658 2.80157 32 - -
10189 1.38629 1.38629 1.38629 1.38629
10190 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10191 33 0.14627 3.34770 2.78072 3.24630 33 - -
10192 1.38629 1.38629 1.38629 1.38629
10193 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10194 34 3.39555 0.13478 3.44658 2.80157 34 - -
10195 1.38629 1.38629 1.38629 1.38629
10196 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10197 35 3.39555 0.13478 3.44658 2.80157 35 - -
10198 1.38629 1.38629 1.38629 1.38629
10199 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10200 36 3.05586 2.57429 3.10526 0.18405 36 - -
10201 1.38629 1.38629 1.38629 1.38629
10202 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10203 37 0.14627 3.34770 2.78072 3.24630 37 - -
10204 1.38629 1.38629 1.38629 1.38629
10205 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10206 38 3.05586 2.57429 3.10526 0.18405 38 - -
10207 1.38629 1.38629 1.38629 1.38629
10208 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10209 39 2.92468 3.55461 0.12085 3.45586 39 - -
10210 1.38629 1.38629 1.38629 1.38629
10211 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10212 40 0.14627 3.34770 2.78072 3.24630 40 - -
10213 1.38629 1.38629 1.38629 1.38629
10214 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10215 41 0.14627 3.34770 2.78072 3.24630 41 - -
10216 1.38629 1.38629 1.38629 1.38629
10217 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10218 42 2.92468 3.55461 0.12085 3.45586 42 - -
10219 1.38629 1.38629 1.38629 1.38629
10220 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10221 43 2.92468 3.55461 0.12085 3.45586 43 - -
10222 1.38629 1.38629 1.38629 1.38629
10223 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10224 44 2.92468 3.55461 0.12085 3.45586 44 - -
10225 1.38629 1.38629 1.38629 1.38629
10226 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547
10227 45 3.39555 0.13478 3.44658 2.80157 45 - -
10228 1.38629 1.38629 1.38629 1.38629
10229 0.01897 3.97456 * 1.46634 0.26236 0.00000 *
10230 //
10231 HMMER3/b [3.0 | March 2010]
10232 NAME 2_5.8_Alveolata_58S_start_twoc_long
10233 LENG 45
10234 ALPH DNA
10235 RF no
10236 CS no
10237 MAP yes
10238 DATE Wed Feb 29 13:25:48 2012
10239 NSEQ 25
10240 EFFN 3.573608
10241 CKSUM 3334689644
10242 STATS LOCAL MSV -7.4338 0.71933
10243 STATS LOCAL VITERBI -7.6275 0.71933
10244 STATS LOCAL FORWARD -3.9955 0.71933
10245 HMM A C G T
10246 m->m m->i m->d i->m i->i d->m d->d
10247 COMPO 1.54120 1.41879 1.21665 1.39575
10248 1.38629 1.38629 1.38629 1.38629
10249 0.03525 4.05588 4.05588 1.46634 0.26236 0.00000 *
10250 1 3.52168 0.12012 3.56730 2.89304 1 - -
10251 1.38629 1.38629 1.38629 1.38629
10252 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10253 2 0.13213 3.45734 2.85176 3.36640 2 - -
10254 1.38629 1.38629 1.38629 1.38629
10255 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10256 3 0.13213 3.45734 2.85176 3.36640 3 - -
10257 1.38629 1.38629 1.38629 1.38629
10258 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10259 4 3.52168 0.12012 3.56730 2.89304 4 - -
10260 1.38629 1.38629 1.38629 1.38629
10261 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10262 5 3.16710 2.64497 3.21222 0.16653 5 - -
10263 1.38629 1.38629 1.38629 1.38629
10264 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10265 6 3.16710 2.64497 3.21222 0.16653 6 - -
10266 1.38629 1.38629 1.38629 1.38629
10267 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10268 7 3.16710 2.64497 3.21222 0.16653 7 - -
10269 1.38629 1.38629 1.38629 1.38629
10270 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10271 8 3.52168 0.12012 3.56730 2.89304 8 - -
10272 1.38629 1.38629 1.38629 1.38629
10273 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10274 9 0.13213 3.45734 2.85176 3.36640 9 - -
10275 1.38629 1.38629 1.38629 1.38629
10276 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10277 10 3.00056 3.66536 0.10901 3.57823 10 - -
10278 1.38629 1.38629 1.38629 1.38629
10279 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10280 11 2.46586 0.76758 2.53784 0.98915 11 - -
10281 1.38629 1.38629 1.38629 1.38629
10282 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10283 12 3.00056 3.66536 0.10901 3.57823 12 - -
10284 1.38629 1.38629 1.38629 1.38629
10285 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10286 13 0.13213 3.45734 2.85176 3.36640 13 - -
10287 1.38629 1.38629 1.38629 1.38629
10288 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10289 14 3.16710 2.64497 3.21222 0.16653 14 - -
10290 1.38629 1.38629 1.38629 1.38629
10291 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10292 15 3.00056 3.66536 0.10901 3.57823 15 - -
10293 1.38629 1.38629 1.38629 1.38629
10294 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10295 16 3.00056 3.66536 0.10901 3.57823 16 - -
10296 1.38629 1.38629 1.38629 1.38629
10297 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10298 17 0.13213 3.45734 2.85176 3.36640 17 - -
10299 1.38629 1.38629 1.38629 1.38629
10300 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10301 18 3.16710 2.64497 3.21222 0.16653 18 - -
10302 1.38629 1.38629 1.38629 1.38629
10303 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10304 19 0.21940 3.16112 2.23213 3.05081 19 - -
10305 1.38629 1.38629 1.38629 1.38629
10306 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10307 20 3.16710 2.64497 3.21222 0.16653 20 - -
10308 1.38629 1.38629 1.38629 1.38629
10309 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10310 21 3.52168 0.12012 3.56730 2.89304 21 - -
10311 1.38629 1.38629 1.38629 1.38629
10312 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10313 22 3.16710 2.64497 3.21222 0.16653 22 - -
10314 1.38629 1.38629 1.38629 1.38629
10315 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10316 23 3.16710 2.64497 3.21222 0.16653 23 - -
10317 1.38629 1.38629 1.38629 1.38629
10318 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10319 24 3.00056 3.66536 0.10901 3.57823 24 - -
10320 1.38629 1.38629 1.38629 1.38629
10321 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10322 25 3.00056 3.66536 0.10901 3.57823 25 - -
10323 1.38629 1.38629 1.38629 1.38629
10324 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10325 26 3.52168 0.12012 3.56730 2.89304 26 - -
10326 1.38629 1.38629 1.38629 1.38629
10327 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10328 27 3.16710 2.64497 3.21222 0.16653 27 - -
10329 1.38629 1.38629 1.38629 1.38629
10330 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10331 28 3.52168 0.12012 3.56730 2.89304 28 - -
10332 1.38629 1.38629 1.38629 1.38629
10333 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10334 29 2.32922 3.31349 0.19164 3.20305 29 - -
10335 1.38629 1.38629 1.38629 1.38629
10336 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10337 30 2.32922 3.31349 0.19164 3.20305 30 - -
10338 1.38629 1.38629 1.38629 1.38629
10339 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10340 31 3.00056 3.66536 0.10901 3.57823 31 - -
10341 1.38629 1.38629 1.38629 1.38629
10342 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10343 32 3.52168 0.12012 3.56730 2.89304 32 - -
10344 1.38629 1.38629 1.38629 1.38629
10345 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10346 33 0.13213 3.45734 2.85176 3.36640 33 - -
10347 1.38629 1.38629 1.38629 1.38629
10348 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10349 34 3.52168 0.12012 3.56730 2.89304 34 - -
10350 1.38629 1.38629 1.38629 1.38629
10351 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10352 35 3.52168 0.12012 3.56730 2.89304 35 - -
10353 1.38629 1.38629 1.38629 1.38629
10354 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10355 36 3.16710 2.64497 3.21222 0.16653 36 - -
10356 1.38629 1.38629 1.38629 1.38629
10357 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10358 37 2.31883 2.50191 0.47001 1.63638 37 - -
10359 1.38629 1.38629 1.38629 1.38629
10360 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10361 38 3.16710 2.64497 3.21222 0.16653 38 - -
10362 1.38629 1.38629 1.38629 1.38629
10363 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10364 39 3.00056 3.66536 0.10901 3.57823 39 - -
10365 1.38629 1.38629 1.38629 1.38629
10366 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10367 40 0.13213 3.45734 2.85176 3.36640 40 - -
10368 1.38629 1.38629 1.38629 1.38629
10369 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10370 41 0.13213 3.45734 2.85176 3.36640 41 - -
10371 1.38629 1.38629 1.38629 1.38629
10372 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10373 42 3.00056 3.66536 0.10901 3.57823 42 - -
10374 1.38629 1.38629 1.38629 1.38629
10375 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10376 43 3.00056 3.66536 0.10901 3.57823 43 - -
10377 1.38629 1.38629 1.38629 1.38629
10378 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10379 44 3.00056 3.66536 0.10901 3.57823 44 - -
10380 1.38629 1.38629 1.38629 1.38629
10381 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547
10382 45 3.52168 0.12012 3.56730 2.89304 45 - -
10383 1.38629 1.38629 1.38629 1.38629
10384 0.01778 4.03841 * 1.46634 0.26236 0.00000 *
10385 //
10386 HMMER3/b [3.0 | March 2010]
10387 NAME 2_5.8_Alveolata_58S_start_twod_long
10388 LENG 45
10389 ALPH DNA
10390 RF no
10391 CS no
10392 MAP yes
10393 DATE Wed Feb 29 13:25:53 2012
10394 NSEQ 12
10395 EFFN 3.430664
10396 CKSUM 3640048188
10397 STATS LOCAL MSV -7.2425 0.71931
10398 STATS LOCAL VITERBI -7.5607 0.71931
10399 STATS LOCAL FORWARD -3.7783 0.71931
10400 HMM A C G T
10401 m->m m->i m->d i->m i->i d->m d->d
10402 COMPO 1.41933 1.31164 1.25837 1.58655
10403 1.38629 1.38629 1.38629 1.38629
10404 0.03617 4.03081 4.03081 1.46634 0.26236 0.00000 *
10405 1 3.47220 0.12564 3.51998 2.85737 1 - -
10406 1.38629 1.38629 1.38629 1.38629
10407 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10408 2 0.13749 3.41422 2.82393 3.31912 2 - -
10409 1.38629 1.38629 1.38629 1.38629
10410 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10411 3 0.13749 3.41422 2.82393 3.31912 3 - -
10412 1.38629 1.38629 1.38629 1.38629
10413 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10414 4 3.47220 0.12564 3.51998 2.85737 4 - -
10415 1.38629 1.38629 1.38629 1.38629
10416 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10417 5 3.12302 2.61701 3.16985 0.17323 5 - -
10418 1.38629 1.38629 1.38629 1.38629
10419 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10420 6 3.12302 2.61701 3.16985 0.17323 6 - -
10421 1.38629 1.38629 1.38629 1.38629
10422 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10423 7 3.12302 2.61701 3.16985 0.17323 7 - -
10424 1.38629 1.38629 1.38629 1.38629
10425 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10426 8 3.47220 0.12564 3.51998 2.85737 8 - -
10427 1.38629 1.38629 1.38629 1.38629
10428 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10429 9 0.13749 3.41422 2.82393 3.31912 9 - -
10430 1.38629 1.38629 1.38629 1.38629
10431 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10432 10 2.97107 3.62210 0.11347 3.53036 10 - -
10433 1.38629 1.38629 1.38629 1.38629
10434 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10435 11 3.47220 0.12564 3.51998 2.85737 11 - -
10436 1.38629 1.38629 1.38629 1.38629
10437 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10438 12 2.97107 3.62210 0.11347 3.53036 12 - -
10439 1.38629 1.38629 1.38629 1.38629
10440 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10441 13 0.13749 3.41422 2.82393 3.31912 13 - -
10442 1.38629 1.38629 1.38629 1.38629
10443 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10444 14 3.47220 0.12564 3.51998 2.85737 14 - -
10445 1.38629 1.38629 1.38629 1.38629
10446 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10447 15 2.97107 3.62210 0.11347 3.53036 15 - -
10448 1.38629 1.38629 1.38629 1.38629
10449 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10450 16 2.97107 3.62210 0.11347 3.53036 16 - -
10451 1.38629 1.38629 1.38629 1.38629
10452 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10453 17 0.13749 3.41422 2.82393 3.31912 17 - -
10454 1.38629 1.38629 1.38629 1.38629
10455 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10456 18 3.12302 2.61701 3.16985 0.17323 18 - -
10457 1.38629 1.38629 1.38629 1.38629
10458 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10459 19 0.13749 3.41422 2.82393 3.31912 19 - -
10460 1.38629 1.38629 1.38629 1.38629
10461 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10462 20 3.12302 2.61701 3.16985 0.17323 20 - -
10463 1.38629 1.38629 1.38629 1.38629
10464 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10465 21 3.47220 0.12564 3.51998 2.85737 21 - -
10466 1.38629 1.38629 1.38629 1.38629
10467 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10468 22 3.12302 2.61701 3.16985 0.17323 22 - -
10469 1.38629 1.38629 1.38629 1.38629
10470 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10471 23 2.60677 1.53439 2.67234 0.44387 23 - -
10472 1.38629 1.38629 1.38629 1.38629
10473 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10474 24 2.97107 3.62210 0.11347 3.53036 24 - -
10475 1.38629 1.38629 1.38629 1.38629
10476 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10477 25 2.97107 3.62210 0.11347 3.53036 25 - -
10478 1.38629 1.38629 1.38629 1.38629
10479 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10480 26 3.47220 0.12564 3.51998 2.85737 26 - -
10481 1.38629 1.38629 1.38629 1.38629
10482 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10483 27 3.12302 2.61701 3.16985 0.17323 27 - -
10484 1.38629 1.38629 1.38629 1.38629
10485 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10486 28 3.47220 0.12564 3.51998 2.85737 28 - -
10487 1.38629 1.38629 1.38629 1.38629
10488 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10489 29 1.96943 3.04589 0.27579 2.91993 29 - -
10490 1.38629 1.38629 1.38629 1.38629
10491 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10492 30 2.97107 3.62210 0.11347 3.53036 30 - -
10493 1.38629 1.38629 1.38629 1.38629
10494 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10495 31 2.97107 3.62210 0.11347 3.53036 31 - -
10496 1.38629 1.38629 1.38629 1.38629
10497 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10498 32 3.47220 0.12564 3.51998 2.85737 32 - -
10499 1.38629 1.38629 1.38629 1.38629
10500 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10501 33 0.13749 3.41422 2.82393 3.31912 33 - -
10502 1.38629 1.38629 1.38629 1.38629
10503 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10504 34 3.47220 0.12564 3.51998 2.85737 34 - -
10505 1.38629 1.38629 1.38629 1.38629
10506 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10507 35 3.47220 0.12564 3.51998 2.85737 35 - -
10508 1.38629 1.38629 1.38629 1.38629
10509 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10510 36 0.55266 2.36283 2.26915 1.48267 36 - -
10511 1.38629 1.38629 1.38629 1.38629
10512 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10513 37 0.13749 3.41422 2.82393 3.31912 37 - -
10514 1.38629 1.38629 1.38629 1.38629
10515 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10516 38 3.12302 2.61701 3.16985 0.17323 38 - -
10517 1.38629 1.38629 1.38629 1.38629
10518 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10519 39 2.97107 3.62210 0.11347 3.53036 39 - -
10520 1.38629 1.38629 1.38629 1.38629
10521 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10522 40 0.13749 3.41422 2.82393 3.31912 40 - -
10523 1.38629 1.38629 1.38629 1.38629
10524 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10525 41 0.13749 3.41422 2.82393 3.31912 41 - -
10526 1.38629 1.38629 1.38629 1.38629
10527 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10528 42 2.97107 3.62210 0.11347 3.53036 42 - -
10529 1.38629 1.38629 1.38629 1.38629
10530 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10531 43 2.97107 3.62210 0.11347 3.53036 43 - -
10532 1.38629 1.38629 1.38629 1.38629
10533 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10534 44 2.97107 3.62210 0.11347 3.53036 44 - -
10535 1.38629 1.38629 1.38629 1.38629
10536 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547
10537 45 3.47220 0.12564 3.51998 2.85737 45 - -
10538 1.38629 1.38629 1.38629 1.38629
10539 0.01825 4.01289 * 1.46634 0.26236 0.00000 *
10540 //
10541 HMMER3/b [3.0 | March 2010]
10542 NAME 4_LSU_Alveolata_4_LSU_start_elevena_long
10543 LENG 45
10544 ALPH DNA
10545 RF no
10546 CS no
10547 MAP yes
10548 DATE Thu Mar 1 14:41:31 2012
10549 NSEQ 12
10550 EFFN 3.272461
10551 CKSUM 1146151681
10552 STATS LOCAL MSV -8.0339 0.71932
10553 STATS LOCAL VITERBI -7.7952 0.71932
10554 STATS LOCAL FORWARD -4.0279 0.71932
10555 HMM A C G T
10556 m->m m->i m->d i->m i->i d->m d->d
10557 COMPO 1.47342 1.38843 1.32140 1.36794
10558 1.38629 1.38629 1.38629 1.38629
10559 0.03723 4.00231 4.00231 1.46634 0.26236 0.00000 *
10560 1 3.07227 2.58474 3.12105 0.18133 1 - -
10561 1.38629 1.38629 1.38629 1.38629
10562 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10563 2 3.07227 2.58474 3.12105 0.18133 2 - -
10564 1.38629 1.38629 1.38629 1.38629
10565 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10566 3 3.07227 2.58474 3.12105 0.18133 3 - -
10567 1.38629 1.38629 1.38629 1.38629
10568 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10569 4 2.93618 3.57128 0.11898 3.47424 4 - -
10570 1.38629 1.38629 1.38629 1.38629
10571 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10572 5 3.41441 0.13246 3.46466 2.81537 5 - -
10573 1.38629 1.38629 1.38629 1.38629
10574 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10575 6 3.07227 2.58474 3.12105 0.18133 6 - -
10576 1.38629 1.38629 1.38629 1.38629
10577 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10578 7 3.41441 0.13246 3.46466 2.81537 7 - -
10579 1.38629 1.38629 1.38629 1.38629
10580 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10581 8 3.41441 0.13246 3.46466 2.81537 8 - -
10582 1.38629 1.38629 1.38629 1.38629
10583 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10584 9 3.07227 2.58474 3.12105 0.18133 9 - -
10585 1.38629 1.38629 1.38629 1.38629
10586 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10587 10 2.93618 3.57128 0.11898 3.47424 10 - -
10588 1.38629 1.38629 1.38629 1.38629
10589 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10590 11 0.14405 3.36405 2.79138 3.26418 11 - -
10591 1.38629 1.38629 1.38629 1.38629
10592 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10593 12 2.93618 3.57128 0.11898 3.47424 12 - -
10594 1.38629 1.38629 1.38629 1.38629
10595 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10596 13 0.14405 3.36405 2.79138 3.26418 13 - -
10597 1.38629 1.38629 1.38629 1.38629
10598 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10599 14 3.07227 2.58474 3.12105 0.18133 14 - -
10600 1.38629 1.38629 1.38629 1.38629
10601 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10602 15 3.41441 0.13246 3.46466 2.81537 15 - -
10603 1.38629 1.38629 1.38629 1.38629
10604 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10605 16 2.93618 3.57128 0.11898 3.47424 16 - -
10606 1.38629 1.38629 1.38629 1.38629
10607 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10608 17 2.37276 3.26979 0.19096 3.15593 17 - -
10609 1.38629 1.38629 1.38629 1.38629
10610 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10611 18 2.93618 3.57128 0.11898 3.47424 18 - -
10612 1.38629 1.38629 1.38629 1.38629
10613 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10614 19 3.07227 2.58474 3.12105 0.18133 19 - -
10615 1.38629 1.38629 1.38629 1.38629
10616 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10617 20 2.93618 3.57128 0.11898 3.47424 20 - -
10618 1.38629 1.38629 1.38629 1.38629
10619 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10620 21 0.14405 3.36405 2.79138 3.26418 21 - -
10621 1.38629 1.38629 1.38629 1.38629
10622 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10623 22 2.93618 3.57128 0.11898 3.47424 22 - -
10624 1.38629 1.38629 1.38629 1.38629
10625 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10626 23 2.93618 3.57128 0.11898 3.47424 23 - -
10627 1.38629 1.38629 1.38629 1.38629
10628 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10629 24 3.41441 0.13246 3.46466 2.81537 24 - -
10630 1.38629 1.38629 1.38629 1.38629
10631 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10632 25 3.41441 0.13246 3.46466 2.81537 25 - -
10633 1.38629 1.38629 1.38629 1.38629
10634 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10635 26 0.14405 3.36405 2.79138 3.26418 26 - -
10636 1.38629 1.38629 1.38629 1.38629
10637 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10638 27 3.07227 2.58474 3.12105 0.18133 27 - -
10639 1.38629 1.38629 1.38629 1.38629
10640 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10641 28 3.41441 0.13246 3.46466 2.81537 28 - -
10642 1.38629 1.38629 1.38629 1.38629
10643 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10644 29 3.41441 0.13246 3.46466 2.81537 29 - -
10645 1.38629 1.38629 1.38629 1.38629
10646 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10647 30 2.93618 3.57128 0.11898 3.47424 30 - -
10648 1.38629 1.38629 1.38629 1.38629
10649 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10650 31 3.41441 0.13246 3.46466 2.81537 31 - -
10651 1.38629 1.38629 1.38629 1.38629
10652 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10653 32 3.41441 0.13246 3.46466 2.81537 32 - -
10654 1.38629 1.38629 1.38629 1.38629
10655 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10656 33 2.93618 3.57128 0.11898 3.47424 33 - -
10657 1.38629 1.38629 1.38629 1.38629
10658 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10659 34 0.14405 3.36405 2.79138 3.26418 34 - -
10660 1.38629 1.38629 1.38629 1.38629
10661 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10662 35 0.14405 3.36405 2.79138 3.26418 35 - -
10663 1.38629 1.38629 1.38629 1.38629
10664 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10665 36 3.07227 2.58474 3.12105 0.18133 36 - -
10666 1.38629 1.38629 1.38629 1.38629
10667 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10668 37 3.07227 2.58474 3.12105 0.18133 37 - -
10669 1.38629 1.38629 1.38629 1.38629
10670 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10671 38 3.07227 2.58474 3.12105 0.18133 38 - -
10672 1.38629 1.38629 1.38629 1.38629
10673 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10674 39 0.14405 3.36405 2.79138 3.26418 39 - -
10675 1.38629 1.38629 1.38629 1.38629
10676 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10677 40 0.14405 3.36405 2.79138 3.26418 40 - -
10678 1.38629 1.38629 1.38629 1.38629
10679 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10680 41 2.93618 3.57128 0.11898 3.47424 41 - -
10681 1.38629 1.38629 1.38629 1.38629
10682 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10683 42 3.41441 0.13246 3.46466 2.81537 42 - -
10684 1.38629 1.38629 1.38629 1.38629
10685 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10686 43 0.14405 3.36405 2.79138 3.26418 43 - -
10687 1.38629 1.38629 1.38629 1.38629
10688 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10689 44 3.07227 2.58474 3.12105 0.18133 44 - -
10690 1.38629 1.38629 1.38629 1.38629
10691 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547
10692 45 0.14405 3.36405 2.79138 3.26418 45 - -
10693 1.38629 1.38629 1.38629 1.38629
10694 0.01879 3.98387 * 1.46634 0.26236 0.00000 *
10695 //
10696 HMMER3/b [3.0 | March 2010]
10697 NAME 4_LSU_Alveolata_4_LSU_start_elevenb_long
10698 LENG 45
10699 ALPH DNA
10700 RF no
10701 CS no
10702 MAP yes
10703 DATE Thu Mar 1 14:41:38 2012
10704 NSEQ 7
10705 EFFN 3.749512
10706 CKSUM 2366441104
10707 STATS LOCAL MSV -7.0652 0.71931
10708 STATS LOCAL VITERBI -7.5685 0.71931
10709 STATS LOCAL FORWARD -4.4492 0.71931
10710 HMM A C G T
10711 m->m m->i m->d i->m i->i d->m d->d
10712 COMPO 1.38524 1.47412 1.40056 1.29354
10713 1.38629 1.38629 1.38629 1.38629
10714 0.03419 4.08589 4.08589 1.46634 0.26236 0.00000 *
10715 1 1.79493 1.75931 2.34666 0.56914 1 - -
10716 1.38629 1.38629 1.38629 1.38629
10717 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10718 2 2.88109 1.92354 2.93805 0.29455 2 - -
10719 1.38629 1.38629 1.38629 1.38629
10720 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10721 3 2.49444 0.76834 2.56603 0.97594 3 - -
10722 1.38629 1.38629 1.38629 1.38629
10723 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10724 4 2.27102 2.42071 0.55082 1.46337 4 - -
10725 1.38629 1.38629 1.38629 1.38629
10726 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10727 5 3.57922 0.11406 3.62226 2.93422 5 - -
10728 1.38629 1.38629 1.38629 1.38629
10729 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10730 6 3.21913 2.67796 3.26222 0.15899 6 - -
10731 1.38629 1.38629 1.38629 1.38629
10732 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10733 7 3.57922 0.11406 3.62226 2.93422 7 - -
10734 1.38629 1.38629 1.38629 1.38629
10735 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10736 8 3.57922 0.11406 3.62226 2.93422 8 - -
10737 1.38629 1.38629 1.38629 1.38629
10738 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10739 9 3.21913 2.67796 3.26222 0.15899 9 - -
10740 1.38629 1.38629 1.38629 1.38629
10741 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10742 10 3.03446 3.71539 0.10410 3.63368 10 - -
10743 1.38629 1.38629 1.38629 1.38629
10744 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10745 11 0.12616 3.50768 2.88414 3.42167 11 - -
10746 1.38629 1.38629 1.38629 1.38629
10747 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10748 12 0.12616 3.50768 2.88414 3.42167 12 - -
10749 1.38629 1.38629 1.38629 1.38629
10750 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10751 13 0.12616 3.50768 2.88414 3.42167 13 - -
10752 1.38629 1.38629 1.38629 1.38629
10753 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10754 14 3.21913 2.67796 3.26222 0.15899 14 - -
10755 1.38629 1.38629 1.38629 1.38629
10756 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10757 15 3.57922 0.11406 3.62226 2.93422 15 - -
10758 1.38629 1.38629 1.38629 1.38629
10759 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10760 16 3.03446 3.71539 0.10410 3.63368 16 - -
10761 1.38629 1.38629 1.38629 1.38629
10762 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10763 17 3.03446 3.71539 0.10410 3.63368 17 - -
10764 1.38629 1.38629 1.38629 1.38629
10765 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10766 18 3.03446 3.71539 0.10410 3.63368 18 - -
10767 1.38629 1.38629 1.38629 1.38629
10768 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10769 19 3.21913 2.67796 3.26222 0.15899 19 - -
10770 1.38629 1.38629 1.38629 1.38629
10771 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10772 20 3.03446 3.71539 0.10410 3.63368 20 - -
10773 1.38629 1.38629 1.38629 1.38629
10774 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10775 21 0.12616 3.50768 2.88414 3.42167 21 - -
10776 1.38629 1.38629 1.38629 1.38629
10777 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10778 22 3.03446 3.71539 0.10410 3.63368 22 - -
10779 1.38629 1.38629 1.38629 1.38629
10780 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10781 23 3.03446 3.71539 0.10410 3.63368 23 - -
10782 1.38629 1.38629 1.38629 1.38629
10783 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10784 24 3.57922 0.11406 3.62226 2.93422 24 - -
10785 1.38629 1.38629 1.38629 1.38629
10786 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10787 25 3.21913 2.67796 3.26222 0.15899 25 - -
10788 1.38629 1.38629 1.38629 1.38629
10789 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10790 26 0.12616 3.50768 2.88414 3.42167 26 - -
10791 1.38629 1.38629 1.38629 1.38629
10792 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10793 27 3.21913 2.67796 3.26222 0.15899 27 - -
10794 1.38629 1.38629 1.38629 1.38629
10795 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10796 28 3.57922 0.11406 3.62226 2.93422 28 - -
10797 1.38629 1.38629 1.38629 1.38629
10798 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10799 29 3.57922 0.11406 3.62226 2.93422 29 - -
10800 1.38629 1.38629 1.38629 1.38629
10801 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10802 30 3.03446 3.71539 0.10410 3.63368 30 - -
10803 1.38629 1.38629 1.38629 1.38629
10804 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10805 31 3.57922 0.11406 3.62226 2.93422 31 - -
10806 1.38629 1.38629 1.38629 1.38629
10807 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10808 32 3.21913 2.67796 3.26222 0.15899 32 - -
10809 1.38629 1.38629 1.38629 1.38629
10810 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10811 33 3.03446 3.71539 0.10410 3.63368 33 - -
10812 1.38629 1.38629 1.38629 1.38629
10813 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10814 34 0.12616 3.50768 2.88414 3.42167 34 - -
10815 1.38629 1.38629 1.38629 1.38629
10816 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10817 35 0.12616 3.50768 2.88414 3.42167 35 - -
10818 1.38629 1.38629 1.38629 1.38629
10819 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10820 36 3.21913 2.67796 3.26222 0.15899 36 - -
10821 1.38629 1.38629 1.38629 1.38629
10822 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10823 37 3.21913 2.67796 3.26222 0.15899 37 - -
10824 1.38629 1.38629 1.38629 1.38629
10825 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10826 38 3.21913 2.67796 3.26222 0.15899 38 - -
10827 1.38629 1.38629 1.38629 1.38629
10828 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10829 39 0.12616 3.50768 2.88414 3.42167 39 - -
10830 1.38629 1.38629 1.38629 1.38629
10831 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10832 40 0.12616 3.50768 2.88414 3.42167 40 - -
10833 1.38629 1.38629 1.38629 1.38629
10834 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10835 41 3.03446 3.71539 0.10410 3.63368 41 - -
10836 1.38629 1.38629 1.38629 1.38629
10837 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10838 42 3.57922 0.11406 3.62226 2.93422 42 - -
10839 1.38629 1.38629 1.38629 1.38629
10840 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10841 43 0.12616 3.50768 2.88414 3.42167 43 - -
10842 1.38629 1.38629 1.38629 1.38629
10843 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10844 44 3.21913 2.67796 3.26222 0.15899 44 - -
10845 1.38629 1.38629 1.38629 1.38629
10846 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547
10847 45 0.12616 3.50768 2.88414 3.42167 45 - -
10848 1.38629 1.38629 1.38629 1.38629
10849 0.01724 4.06894 * 1.46634 0.26236 0.00000 *
10850 //
10851 HMMER3/b [3.0 | March 2010]
10852 NAME 4_LSU_Alveolata_4_LSU_start_elevenc_long
10853 LENG 45
10854 ALPH DNA
10855 RF no
10856 CS no
10857 MAP yes
10858 DATE Thu Mar 1 14:41:44 2012
10859 NSEQ 2
10860 EFFN 2.000000
10861 CKSUM 4069155507
10862 STATS LOCAL MSV -7.5533 0.72843
10863 STATS LOCAL VITERBI -8.3163 0.72843
10864 STATS LOCAL FORWARD -3.8936 0.72843
10865 HMM A C G T
10866 m->m m->i m->d i->m i->i d->m d->d
10867 COMPO 1.45663 1.50989 1.37466 1.22718
10868 1.38629 1.38629 1.38629 1.38629
10869 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
10870 1 2.57915 2.25909 2.64442 0.28946 1 - -
10871 1.38629 1.38629 1.38629 1.38629
10872 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10873 2 2.81865 0.23582 2.88868 2.35662 2 - -
10874 1.38629 1.38629 1.38629 1.38629
10875 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10876 3 2.57915 2.25909 2.64442 0.28946 3 - -
10877 1.38629 1.38629 1.38629 1.38629
10878 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10879 4 2.57915 2.25909 2.64442 0.28946 4 - -
10880 1.38629 1.38629 1.38629 1.38629
10881 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10882 5 2.81865 0.23582 2.88868 2.35662 5 - -
10883 1.38629 1.38629 1.38629 1.38629
10884 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10885 6 2.57915 2.25909 2.64442 0.28946 6 - -
10886 1.38629 1.38629 1.38629 1.38629
10887 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10888 7 2.81865 0.23582 2.88868 2.35662 7 - -
10889 1.38629 1.38629 1.38629 1.38629
10890 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10891 8 2.81865 0.23582 2.88868 2.35662 8 - -
10892 1.38629 1.38629 1.38629 1.38629
10893 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10894 9 2.57915 2.25909 2.64442 0.28946 9 - -
10895 1.38629 1.38629 1.38629 1.38629
10896 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10897 10 2.53331 3.02441 0.20344 2.88069 10 - -
10898 1.38629 1.38629 1.38629 1.38629
10899 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10900 11 0.23862 2.84929 2.43386 2.70756 11 - -
10901 1.38629 1.38629 1.38629 1.38629
10902 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10903 12 2.53331 3.02441 0.20344 2.88069 12 - -
10904 1.38629 1.38629 1.38629 1.38629
10905 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10906 13 0.23862 2.84929 2.43386 2.70756 13 - -
10907 1.38629 1.38629 1.38629 1.38629
10908 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10909 14 2.57915 2.25909 2.64442 0.28946 14 - -
10910 1.38629 1.38629 1.38629 1.38629
10911 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10912 15 2.57915 2.25909 2.64442 0.28946 15 - -
10913 1.38629 1.38629 1.38629 1.38629
10914 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10915 16 2.53331 3.02441 0.20344 2.88069 16 - -
10916 1.38629 1.38629 1.38629 1.38629
10917 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10918 17 2.53331 3.02441 0.20344 2.88069 17 - -
10919 1.38629 1.38629 1.38629 1.38629
10920 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10921 18 2.53331 3.02441 0.20344 2.88069 18 - -
10922 1.38629 1.38629 1.38629 1.38629
10923 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10924 19 2.57915 2.25909 2.64442 0.28946 19 - -
10925 1.38629 1.38629 1.38629 1.38629
10926 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10927 20 2.53331 3.02441 0.20344 2.88069 20 - -
10928 1.38629 1.38629 1.38629 1.38629
10929 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10930 21 0.23862 2.84929 2.43386 2.70756 21 - -
10931 1.38629 1.38629 1.38629 1.38629
10932 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10933 22 2.53331 3.02441 0.20344 2.88069 22 - -
10934 1.38629 1.38629 1.38629 1.38629
10935 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10936 23 2.53331 3.02441 0.20344 2.88069 23 - -
10937 1.38629 1.38629 1.38629 1.38629
10938 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10939 24 2.81865 0.23582 2.88868 2.35662 24 - -
10940 1.38629 1.38629 1.38629 1.38629
10941 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10942 25 2.57915 2.25909 2.64442 0.28946 25 - -
10943 1.38629 1.38629 1.38629 1.38629
10944 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10945 26 0.23862 2.84929 2.43386 2.70756 26 - -
10946 1.38629 1.38629 1.38629 1.38629
10947 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10948 27 2.57915 2.25909 2.64442 0.28946 27 - -
10949 1.38629 1.38629 1.38629 1.38629
10950 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10951 28 2.81865 0.23582 2.88868 2.35662 28 - -
10952 1.38629 1.38629 1.38629 1.38629
10953 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10954 29 2.81865 0.23582 2.88868 2.35662 29 - -
10955 1.38629 1.38629 1.38629 1.38629
10956 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10957 30 2.53331 3.02441 0.20344 2.88069 30 - -
10958 1.38629 1.38629 1.38629 1.38629
10959 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10960 31 2.81865 0.23582 2.88868 2.35662 31 - -
10961 1.38629 1.38629 1.38629 1.38629
10962 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10963 32 2.57915 2.25909 2.64442 0.28946 32 - -
10964 1.38629 1.38629 1.38629 1.38629
10965 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10966 33 2.53331 3.02441 0.20344 2.88069 33 - -
10967 1.38629 1.38629 1.38629 1.38629
10968 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10969 34 0.23862 2.84929 2.43386 2.70756 34 - -
10970 1.38629 1.38629 1.38629 1.38629
10971 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10972 35 0.23862 2.84929 2.43386 2.70756 35 - -
10973 1.38629 1.38629 1.38629 1.38629
10974 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10975 36 2.57915 2.25909 2.64442 0.28946 36 - -
10976 1.38629 1.38629 1.38629 1.38629
10977 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10978 37 2.57915 2.25909 2.64442 0.28946 37 - -
10979 1.38629 1.38629 1.38629 1.38629
10980 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10981 38 2.57915 2.25909 2.64442 0.28946 38 - -
10982 1.38629 1.38629 1.38629 1.38629
10983 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10984 39 0.23862 2.84929 2.43386 2.70756 39 - -
10985 1.38629 1.38629 1.38629 1.38629
10986 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10987 40 0.23862 2.84929 2.43386 2.70756 40 - -
10988 1.38629 1.38629 1.38629 1.38629
10989 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10990 41 2.53331 3.02441 0.20344 2.88069 41 - -
10991 1.38629 1.38629 1.38629 1.38629
10992 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10993 42 2.81865 0.23582 2.88868 2.35662 42 - -
10994 1.38629 1.38629 1.38629 1.38629
10995 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10996 43 0.23862 2.84929 2.43386 2.70756 43 - -
10997 1.38629 1.38629 1.38629 1.38629
10998 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
10999 44 2.57915 2.25909 2.64442 0.28946 44 - -
11000 1.38629 1.38629 1.38629 1.38629
11001 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11002 45 0.23862 2.84929 2.43386 2.70756 45 - -
11003 1.38629 1.38629 1.38629 1.38629
11004 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
11005 //
11006 HMMER3/b [3.0 | March 2010]
11007 NAME 4_LSU_Alveolata_4_LSU_start_elevend_long
11008 LENG 45
11009 ALPH DNA
11010 RF no
11011 CS no
11012 MAP yes
11013 DATE Thu Mar 1 14:41:50 2012
11014 NSEQ 6
11015 EFFN 3.483398
11016 CKSUM 493634052
11017 STATS LOCAL MSV -7.4999 0.71933
11018 STATS LOCAL VITERBI -7.8190 0.71933
11019 STATS LOCAL FORWARD -4.2484 0.71933
11020 HMM A C G T
11021 m->m m->i m->d i->m i->i d->m d->d
11022 COMPO 1.28412 1.78988 1.37130 1.19617
11023 1.38629 1.38629 1.38629 1.38629
11024 0.03582 4.04013 4.04013 1.46634 0.26236 0.00000 *
11025 1 3.13947 2.62745 3.18567 0.17069 1 - -
11026 1.38629 1.38629 1.38629 1.38629
11027 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11028 2 3.13947 2.62745 3.18567 0.17069 2 - -
11029 1.38629 1.38629 1.38629 1.38629
11030 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11031 3 0.38809 2.59438 2.41106 1.84999 3 - -
11032 1.38629 1.38629 1.38629 1.38629
11033 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11034 4 3.13947 2.62745 3.18567 0.17069 4 - -
11035 1.38629 1.38629 1.38629 1.38629
11036 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11037 5 2.98216 3.63834 0.11177 3.54832 5 - -
11038 1.38629 1.38629 1.38629 1.38629
11039 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11040 6 2.98216 3.63834 0.11177 3.54832 6 - -
11041 1.38629 1.38629 1.38629 1.38629
11042 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11043 7 3.49075 0.12354 3.53772 2.87077 7 - -
11044 1.38629 1.38629 1.38629 1.38629
11045 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11046 8 3.49075 0.12354 3.53772 2.87077 8 - -
11047 1.38629 1.38629 1.38629 1.38629
11048 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11049 9 3.13947 2.62745 3.18567 0.17069 9 - -
11050 1.38629 1.38629 1.38629 1.38629
11051 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11052 10 2.98216 3.63834 0.11177 3.54832 10 - -
11053 1.38629 1.38629 1.38629 1.38629
11054 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11055 11 0.13545 3.43036 2.83437 3.33682 11 - -
11056 1.38629 1.38629 1.38629 1.38629
11057 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11058 12 0.13545 3.43036 2.83437 3.33682 12 - -
11059 1.38629 1.38629 1.38629 1.38629
11060 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11061 13 0.13545 3.43036 2.83437 3.33682 13 - -
11062 1.38629 1.38629 1.38629 1.38629
11063 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11064 14 3.13947 2.62745 3.18567 0.17069 14 - -
11065 1.38629 1.38629 1.38629 1.38629
11066 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11067 15 3.13947 2.62745 3.18567 0.17069 15 - -
11068 1.38629 1.38629 1.38629 1.38629
11069 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11070 16 2.98216 3.63834 0.11177 3.54832 16 - -
11071 1.38629 1.38629 1.38629 1.38629
11072 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11073 17 2.98216 3.63834 0.11177 3.54832 17 - -
11074 1.38629 1.38629 1.38629 1.38629
11075 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11076 18 0.13545 3.43036 2.83437 3.33682 18 - -
11077 1.38629 1.38629 1.38629 1.38629
11078 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11079 19 3.13947 2.62745 3.18567 0.17069 19 - -
11080 1.38629 1.38629 1.38629 1.38629
11081 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11082 20 2.98216 3.63834 0.11177 3.54832 20 - -
11083 1.38629 1.38629 1.38629 1.38629
11084 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11085 21 3.13947 2.62745 3.18567 0.17069 21 - -
11086 1.38629 1.38629 1.38629 1.38629
11087 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11088 22 2.98216 3.63834 0.11177 3.54832 22 - -
11089 1.38629 1.38629 1.38629 1.38629
11090 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11091 23 0.13545 3.43036 2.83437 3.33682 23 - -
11092 1.38629 1.38629 1.38629 1.38629
11093 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11094 24 2.76674 1.82415 2.82709 0.33325 24 - -
11095 1.38629 1.38629 1.38629 1.38629
11096 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11097 25 2.98216 3.63834 0.11177 3.54832 25 - -
11098 1.38629 1.38629 1.38629 1.38629
11099 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11100 26 0.13545 3.43036 2.83437 3.33682 26 - -
11101 1.38629 1.38629 1.38629 1.38629
11102 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11103 27 3.13947 2.62745 3.18567 0.17069 27 - -
11104 1.38629 1.38629 1.38629 1.38629
11105 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11106 28 3.49075 0.12354 3.53772 2.87077 28 - -
11107 1.38629 1.38629 1.38629 1.38629
11108 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11109 29 3.49075 0.12354 3.53772 2.87077 29 - -
11110 1.38629 1.38629 1.38629 1.38629
11111 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11112 30 2.98216 3.63834 0.11177 3.54832 30 - -
11113 1.38629 1.38629 1.38629 1.38629
11114 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11115 31 3.49075 0.12354 3.53772 2.87077 31 - -
11116 1.38629 1.38629 1.38629 1.38629
11117 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11118 32 3.13947 2.62745 3.18567 0.17069 32 - -
11119 1.38629 1.38629 1.38629 1.38629
11120 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11121 33 2.98216 3.63834 0.11177 3.54832 33 - -
11122 1.38629 1.38629 1.38629 1.38629
11123 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11124 34 0.13545 3.43036 2.83437 3.33682 34 - -
11125 1.38629 1.38629 1.38629 1.38629
11126 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11127 35 0.13545 3.43036 2.83437 3.33682 35 - -
11128 1.38629 1.38629 1.38629 1.38629
11129 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11130 36 3.13947 2.62745 3.18567 0.17069 36 - -
11131 1.38629 1.38629 1.38629 1.38629
11132 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11133 37 3.13947 2.62745 3.18567 0.17069 37 - -
11134 1.38629 1.38629 1.38629 1.38629
11135 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11136 38 3.13947 2.62745 3.18567 0.17069 38 - -
11137 1.38629 1.38629 1.38629 1.38629
11138 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11139 39 0.13545 3.43036 2.83437 3.33682 39 - -
11140 1.38629 1.38629 1.38629 1.38629
11141 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11142 40 0.13545 3.43036 2.83437 3.33682 40 - -
11143 1.38629 1.38629 1.38629 1.38629
11144 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11145 41 2.98216 3.63834 0.11177 3.54832 41 - -
11146 1.38629 1.38629 1.38629 1.38629
11147 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11148 42 3.49075 0.12354 3.53772 2.87077 42 - -
11149 1.38629 1.38629 1.38629 1.38629
11150 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11151 43 0.13545 3.43036 2.83437 3.33682 43 - -
11152 1.38629 1.38629 1.38629 1.38629
11153 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11154 44 3.13947 2.62745 3.18567 0.17069 44 - -
11155 1.38629 1.38629 1.38629 1.38629
11156 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547
11157 45 0.13545 3.43036 2.83437 3.33682 45 - -
11158 1.38629 1.38629 1.38629 1.38629
11159 0.01807 4.02238 * 1.46634 0.26236 0.00000 *
11160 //
11161 HMMER3/b [3.0 | March 2010]
11162 NAME 4_LSU_Alveolata_4_LSU_start_five_long
11163 LENG 45
11164 ALPH DNA
11165 RF no
11166 CS no
11167 MAP yes
11168 DATE Thu Mar 1 14:40:33 2012
11169 NSEQ 4
11170 EFFN 3.371094
11171 CKSUM 2728876017
11172 STATS LOCAL MSV -7.6702 0.71933
11173 STATS LOCAL VITERBI -7.7190 0.71933
11174 STATS LOCAL FORWARD -3.9488 0.71933
11175 HMM A C G T
11176 m->m m->i m->d i->m i->i d->m d->d
11177 COMPO 1.14299 1.32265 1.60290 1.54461
11178 1.38629 1.38629 1.38629 1.38629
11179 0.03656 4.02018 4.02018 1.46634 0.26236 0.00000 *
11180 1 3.10416 2.60503 3.15172 0.17619 1 - -
11181 1.38629 1.38629 1.38629 1.38629
11182 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11183 2 3.10416 2.60503 3.15172 0.17619 2 - -
11184 1.38629 1.38629 1.38629 1.38629
11185 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11186 3 3.10416 2.60503 3.15172 0.17619 3 - -
11187 1.38629 1.38629 1.38629 1.38629
11188 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11189 4 2.95822 3.60333 0.11547 3.50963 4 - -
11190 1.38629 1.38629 1.38629 1.38629
11191 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11192 5 3.45082 0.12812 3.49952 2.84187 5 - -
11193 1.38629 1.38629 1.38629 1.38629
11194 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11195 6 0.13988 3.39564 2.81190 3.29876 6 - -
11196 1.38629 1.38629 1.38629 1.38629
11197 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11198 7 3.45082 0.12812 3.49952 2.84187 7 - -
11199 1.38629 1.38629 1.38629 1.38629
11200 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11201 8 3.45082 0.12812 3.49952 2.84187 8 - -
11202 1.38629 1.38629 1.38629 1.38629
11203 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11204 9 3.10416 2.60503 3.15172 0.17619 9 - -
11205 1.38629 1.38629 1.38629 1.38629
11206 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11207 10 2.95822 3.60333 0.11547 3.50963 10 - -
11208 1.38629 1.38629 1.38629 1.38629
11209 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11210 11 0.13988 3.39564 2.81190 3.29876 11 - -
11211 1.38629 1.38629 1.38629 1.38629
11212 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11213 12 0.13988 3.39564 2.81190 3.29876 12 - -
11214 1.38629 1.38629 1.38629 1.38629
11215 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11216 13 3.45082 0.12812 3.49952 2.84187 13 - -
11217 1.38629 1.38629 1.38629 1.38629
11218 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11219 14 0.97314 2.14888 2.16446 0.93987 14 - -
11220 1.38629 1.38629 1.38629 1.38629
11221 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11222 15 3.45082 0.12812 3.49952 2.84187 15 - -
11223 1.38629 1.38629 1.38629 1.38629
11224 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11225 16 0.13988 3.39564 2.81190 3.29876 16 - -
11226 1.38629 1.38629 1.38629 1.38629
11227 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11228 17 0.13988 3.39564 2.81190 3.29876 17 - -
11229 1.38629 1.38629 1.38629 1.38629
11230 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11231 18 2.95822 3.60333 0.11547 3.50963 18 - -
11232 1.38629 1.38629 1.38629 1.38629
11233 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11234 19 3.45082 0.12812 3.49952 2.84187 19 - -
11235 1.38629 1.38629 1.38629 1.38629
11236 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11237 20 0.13988 3.39564 2.81190 3.29876 20 - -
11238 1.38629 1.38629 1.38629 1.38629
11239 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11240 21 0.13988 3.39564 2.81190 3.29876 21 - -
11241 1.38629 1.38629 1.38629 1.38629
11242 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11243 22 2.95822 3.60333 0.11547 3.50963 22 - -
11244 1.38629 1.38629 1.38629 1.38629
11245 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11246 23 0.13988 3.39564 2.81190 3.29876 23 - -
11247 1.38629 1.38629 1.38629 1.38629
11248 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11249 24 3.10416 2.60503 3.15172 0.17619 24 - -
11250 1.38629 1.38629 1.38629 1.38629
11251 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11252 25 2.95822 3.60333 0.11547 3.50963 25 - -
11253 1.38629 1.38629 1.38629 1.38629
11254 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11255 26 0.13988 3.39564 2.81190 3.29876 26 - -
11256 1.38629 1.38629 1.38629 1.38629
11257 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11258 27 3.45082 0.12812 3.49952 2.84187 27 - -
11259 1.38629 1.38629 1.38629 1.38629
11260 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11261 28 3.45082 0.12812 3.49952 2.84187 28 - -
11262 1.38629 1.38629 1.38629 1.38629
11263 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11264 29 3.45082 0.12812 3.49952 2.84187 29 - -
11265 1.38629 1.38629 1.38629 1.38629
11266 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11267 30 2.95822 3.60333 0.11547 3.50963 30 - -
11268 1.38629 1.38629 1.38629 1.38629
11269 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11270 31 3.45082 0.12812 3.49952 2.84187 31 - -
11271 1.38629 1.38629 1.38629 1.38629
11272 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11273 32 3.10416 2.60503 3.15172 0.17619 32 - -
11274 1.38629 1.38629 1.38629 1.38629
11275 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11276 33 2.95822 3.60333 0.11547 3.50963 33 - -
11277 1.38629 1.38629 1.38629 1.38629
11278 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11279 34 0.13988 3.39564 2.81190 3.29876 34 - -
11280 1.38629 1.38629 1.38629 1.38629
11281 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11282 35 0.13988 3.39564 2.81190 3.29876 35 - -
11283 1.38629 1.38629 1.38629 1.38629
11284 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11285 36 3.45082 0.12812 3.49952 2.84187 36 - -
11286 1.38629 1.38629 1.38629 1.38629
11287 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11288 37 3.10416 2.60503 3.15172 0.17619 37 - -
11289 1.38629 1.38629 1.38629 1.38629
11290 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11291 38 3.10416 2.60503 3.15172 0.17619 38 - -
11292 1.38629 1.38629 1.38629 1.38629
11293 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11294 39 0.13988 3.39564 2.81190 3.29876 39 - -
11295 1.38629 1.38629 1.38629 1.38629
11296 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11297 40 0.13988 3.39564 2.81190 3.29876 40 - -
11298 1.38629 1.38629 1.38629 1.38629
11299 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11300 41 2.95822 3.60333 0.11547 3.50963 41 - -
11301 1.38629 1.38629 1.38629 1.38629
11302 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11303 42 3.45082 0.12812 3.49952 2.84187 42 - -
11304 1.38629 1.38629 1.38629 1.38629
11305 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11306 43 0.13988 3.39564 2.81190 3.29876 43 - -
11307 1.38629 1.38629 1.38629 1.38629
11308 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11309 44 3.10416 2.60503 3.15172 0.17619 44 - -
11310 1.38629 1.38629 1.38629 1.38629
11311 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547
11312 45 0.13988 3.39564 2.81190 3.29876 45 - -
11313 1.38629 1.38629 1.38629 1.38629
11314 0.01845 4.00206 * 1.46634 0.26236 0.00000 *
11315 //
11316 HMMER3/b [3.0 | March 2010]
11317 NAME 4_LSU_Alveolata_4_LSU_start_four_long
11318 LENG 45
11319 ALPH DNA
11320 RF no
11321 CS no
11322 MAP yes
11323 DATE Thu Mar 1 14:40:26 2012
11324 NSEQ 2
11325 EFFN 2.000000
11326 CKSUM 998262845
11327 STATS LOCAL MSV -7.6891 0.73003
11328 STATS LOCAL VITERBI -8.4068 0.73003
11329 STATS LOCAL FORWARD -3.2433 0.73003
11330 HMM A C G T
11331 m->m m->i m->d i->m i->i d->m d->d
11332 COMPO 1.11611 1.39855 1.45506 1.64970
11333 1.38629 1.38629 1.38629 1.38629
11334 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
11335 1 2.15554 1.00938 2.23102 0.88601 1 - -
11336 1.38629 1.38629 1.38629 1.38629
11337 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11338 2 2.81865 0.23582 2.88868 2.35662 2 - -
11339 1.38629 1.38629 1.38629 1.38629
11340 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11341 3 0.23862 2.84929 2.43386 2.70756 3 - -
11342 1.38629 1.38629 1.38629 1.38629
11343 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11344 4 0.23862 2.84929 2.43386 2.70756 4 - -
11345 1.38629 1.38629 1.38629 1.38629
11346 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11347 5 2.53331 3.02441 0.20344 2.88069 5 - -
11348 1.38629 1.38629 1.38629 1.38629
11349 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11350 6 0.23862 2.84929 2.43386 2.70756 6 - -
11351 1.38629 1.38629 1.38629 1.38629
11352 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11353 7 2.81865 0.23582 2.88868 2.35662 7 - -
11354 1.38629 1.38629 1.38629 1.38629
11355 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11356 8 0.23862 2.84929 2.43386 2.70756 8 - -
11357 1.38629 1.38629 1.38629 1.38629
11358 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11359 9 2.57915 2.25909 2.64442 0.28946 9 - -
11360 1.38629 1.38629 1.38629 1.38629
11361 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11362 10 2.53331 3.02441 0.20344 2.88069 10 - -
11363 1.38629 1.38629 1.38629 1.38629
11364 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11365 11 0.23862 2.84929 2.43386 2.70756 11 - -
11366 1.38629 1.38629 1.38629 1.38629
11367 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11368 12 0.23862 2.84929 2.43386 2.70756 12 - -
11369 1.38629 1.38629 1.38629 1.38629
11370 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11371 13 2.53331 3.02441 0.20344 2.88069 13 - -
11372 1.38629 1.38629 1.38629 1.38629
11373 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11374 14 2.81865 0.23582 2.88868 2.35662 14 - -
11375 1.38629 1.38629 1.38629 1.38629
11376 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11377 15 2.15554 1.00938 2.23102 0.88601 15 - -
11378 1.38629 1.38629 1.38629 1.38629
11379 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11380 16 0.23862 2.84929 2.43386 2.70756 16 - -
11381 1.38629 1.38629 1.38629 1.38629
11382 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11383 17 2.53331 3.02441 0.20344 2.88069 17 - -
11384 1.38629 1.38629 1.38629 1.38629
11385 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11386 18 2.53331 3.02441 0.20344 2.88069 18 - -
11387 1.38629 1.38629 1.38629 1.38629
11388 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11389 19 2.15554 1.00938 2.23102 0.88601 19 - -
11390 1.38629 1.38629 1.38629 1.38629
11391 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11392 20 2.81865 0.23582 2.88868 2.35662 20 - -
11393 1.38629 1.38629 1.38629 1.38629
11394 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11395 21 0.92825 2.28391 0.95698 2.13014 21 - -
11396 1.38629 1.38629 1.38629 1.38629
11397 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11398 22 2.53331 3.02441 0.20344 2.88069 22 - -
11399 1.38629 1.38629 1.38629 1.38629
11400 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11401 23 2.81865 0.23582 2.88868 2.35662 23 - -
11402 1.38629 1.38629 1.38629 1.38629
11403 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11404 24 0.23862 2.84929 2.43386 2.70756 24 - -
11405 1.38629 1.38629 1.38629 1.38629
11406 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11407 25 0.23862 2.84929 2.43386 2.70756 25 - -
11408 1.38629 1.38629 1.38629 1.38629
11409 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11410 26 0.23862 2.84929 2.43386 2.70756 26 - -
11411 1.38629 1.38629 1.38629 1.38629
11412 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11413 27 2.81865 0.23582 2.88868 2.35662 27 - -
11414 1.38629 1.38629 1.38629 1.38629
11415 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11416 28 2.81865 0.23582 2.88868 2.35662 28 - -
11417 1.38629 1.38629 1.38629 1.38629
11418 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11419 29 2.81865 0.23582 2.88868 2.35662 29 - -
11420 1.38629 1.38629 1.38629 1.38629
11421 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11422 30 2.53331 3.02441 0.20344 2.88069 30 - -
11423 1.38629 1.38629 1.38629 1.38629
11424 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11425 31 2.81865 0.23582 2.88868 2.35662 31 - -
11426 1.38629 1.38629 1.38629 1.38629
11427 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11428 32 2.57915 2.25909 2.64442 0.28946 32 - -
11429 1.38629 1.38629 1.38629 1.38629
11430 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11431 33 2.53331 3.02441 0.20344 2.88069 33 - -
11432 1.38629 1.38629 1.38629 1.38629
11433 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11434 34 0.23862 2.84929 2.43386 2.70756 34 - -
11435 1.38629 1.38629 1.38629 1.38629
11436 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11437 35 0.23862 2.84929 2.43386 2.70756 35 - -
11438 1.38629 1.38629 1.38629 1.38629
11439 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11440 36 2.57915 2.25909 2.64442 0.28946 36 - -
11441 1.38629 1.38629 1.38629 1.38629
11442 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11443 37 2.57915 2.25909 2.64442 0.28946 37 - -
11444 1.38629 1.38629 1.38629 1.38629
11445 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11446 38 2.57915 2.25909 2.64442 0.28946 38 - -
11447 1.38629 1.38629 1.38629 1.38629
11448 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11449 39 0.23862 2.84929 2.43386 2.70756 39 - -
11450 1.38629 1.38629 1.38629 1.38629
11451 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11452 40 0.23862 2.84929 2.43386 2.70756 40 - -
11453 1.38629 1.38629 1.38629 1.38629
11454 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11455 41 2.53331 3.02441 0.20344 2.88069 41 - -
11456 1.38629 1.38629 1.38629 1.38629
11457 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11458 42 2.81865 0.23582 2.88868 2.35662 42 - -
11459 1.38629 1.38629 1.38629 1.38629
11460 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11461 43 0.23862 2.84929 2.43386 2.70756 43 - -
11462 1.38629 1.38629 1.38629 1.38629
11463 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11464 44 2.57915 2.25909 2.64442 0.28946 44 - -
11465 1.38629 1.38629 1.38629 1.38629
11466 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11467 45 0.23862 2.84929 2.43386 2.70756 45 - -
11468 1.38629 1.38629 1.38629 1.38629
11469 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
11470 //
11471 HMMER3/b [3.0 | March 2010]
11472 NAME 4_LSU_Alveolata_4_LSU_start_fourteen_long
11473 LENG 45
11474 ALPH DNA
11475 RF no
11476 CS no
11477 MAP yes
11478 DATE Thu Mar 1 14:42:14 2012
11479 NSEQ 2
11480 EFFN 2.000000
11481 CKSUM 551182428
11482 STATS LOCAL MSV -7.6363 0.72784
11483 STATS LOCAL VITERBI -8.3274 0.72784
11484 STATS LOCAL FORWARD -3.4964 0.72784
11485 HMM A C G T
11486 m->m m->i m->d i->m i->i d->m d->d
11487 COMPO 1.19067 1.40884 1.42869 1.55148
11488 1.38629 1.38629 1.38629 1.38629
11489 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
11490 1 2.57915 2.25909 2.64442 0.28946 1 - -
11491 1.38629 1.38629 1.38629 1.38629
11492 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11493 2 2.53331 3.02441 0.20344 2.88069 2 - -
11494 1.38629 1.38629 1.38629 1.38629
11495 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11496 3 0.23862 2.84929 2.43386 2.70756 3 - -
11497 1.38629 1.38629 1.38629 1.38629
11498 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11499 4 2.81865 0.23582 2.88868 2.35662 4 - -
11500 1.38629 1.38629 1.38629 1.38629
11501 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11502 5 2.53331 3.02441 0.20344 2.88069 5 - -
11503 1.38629 1.38629 1.38629 1.38629
11504 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11505 6 0.23862 2.84929 2.43386 2.70756 6 - -
11506 1.38629 1.38629 1.38629 1.38629
11507 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11508 7 2.81865 0.23582 2.88868 2.35662 7 - -
11509 1.38629 1.38629 1.38629 1.38629
11510 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11511 8 0.23862 2.84929 2.43386 2.70756 8 - -
11512 1.38629 1.38629 1.38629 1.38629
11513 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11514 9 2.57915 2.25909 2.64442 0.28946 9 - -
11515 1.38629 1.38629 1.38629 1.38629
11516 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11517 10 2.53331 3.02441 0.20344 2.88069 10 - -
11518 1.38629 1.38629 1.38629 1.38629
11519 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11520 11 0.23862 2.84929 2.43386 2.70756 11 - -
11521 1.38629 1.38629 1.38629 1.38629
11522 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11523 12 2.53331 3.02441 0.20344 2.88069 12 - -
11524 1.38629 1.38629 1.38629 1.38629
11525 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11526 13 2.57915 2.25909 2.64442 0.28946 13 - -
11527 1.38629 1.38629 1.38629 1.38629
11528 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11529 14 2.57915 2.25909 2.64442 0.28946 14 - -
11530 1.38629 1.38629 1.38629 1.38629
11531 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11532 15 2.81865 0.23582 2.88868 2.35662 15 - -
11533 1.38629 1.38629 1.38629 1.38629
11534 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11535 16 0.23862 2.84929 2.43386 2.70756 16 - -
11536 1.38629 1.38629 1.38629 1.38629
11537 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11538 17 2.53331 3.02441 0.20344 2.88069 17 - -
11539 1.38629 1.38629 1.38629 1.38629
11540 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11541 18 2.53331 3.02441 0.20344 2.88069 18 - -
11542 1.38629 1.38629 1.38629 1.38629
11543 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11544 19 2.81865 0.23582 2.88868 2.35662 19 - -
11545 1.38629 1.38629 1.38629 1.38629
11546 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11547 20 2.81865 0.23582 2.88868 2.35662 20 - -
11548 1.38629 1.38629 1.38629 1.38629
11549 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11550 21 0.23862 2.84929 2.43386 2.70756 21 - -
11551 1.38629 1.38629 1.38629 1.38629
11552 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11553 22 2.53331 3.02441 0.20344 2.88069 22 - -
11554 1.38629 1.38629 1.38629 1.38629
11555 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11556 23 2.81865 0.23582 2.88868 2.35662 23 - -
11557 1.38629 1.38629 1.38629 1.38629
11558 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11559 24 0.23862 2.84929 2.43386 2.70756 24 - -
11560 1.38629 1.38629 1.38629 1.38629
11561 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11562 25 0.23862 2.84929 2.43386 2.70756 25 - -
11563 1.38629 1.38629 1.38629 1.38629
11564 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11565 26 0.23862 2.84929 2.43386 2.70756 26 - -
11566 1.38629 1.38629 1.38629 1.38629
11567 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11568 27 2.81865 0.23582 2.88868 2.35662 27 - -
11569 1.38629 1.38629 1.38629 1.38629
11570 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11571 28 2.81865 0.23582 2.88868 2.35662 28 - -
11572 1.38629 1.38629 1.38629 1.38629
11573 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11574 29 2.81865 0.23582 2.88868 2.35662 29 - -
11575 1.38629 1.38629 1.38629 1.38629
11576 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11577 30 2.53331 3.02441 0.20344 2.88069 30 - -
11578 1.38629 1.38629 1.38629 1.38629
11579 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11580 31 2.81865 0.23582 2.88868 2.35662 31 - -
11581 1.38629 1.38629 1.38629 1.38629
11582 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11583 32 2.57915 2.25909 2.64442 0.28946 32 - -
11584 1.38629 1.38629 1.38629 1.38629
11585 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11586 33 2.53331 3.02441 0.20344 2.88069 33 - -
11587 1.38629 1.38629 1.38629 1.38629
11588 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11589 34 0.23862 2.84929 2.43386 2.70756 34 - -
11590 1.38629 1.38629 1.38629 1.38629
11591 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11592 35 0.23862 2.84929 2.43386 2.70756 35 - -
11593 1.38629 1.38629 1.38629 1.38629
11594 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11595 36 2.57915 2.25909 2.64442 0.28946 36 - -
11596 1.38629 1.38629 1.38629 1.38629
11597 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11598 37 2.57915 2.25909 2.64442 0.28946 37 - -
11599 1.38629 1.38629 1.38629 1.38629
11600 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11601 38 2.57915 2.25909 2.64442 0.28946 38 - -
11602 1.38629 1.38629 1.38629 1.38629
11603 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11604 39 0.23862 2.84929 2.43386 2.70756 39 - -
11605 1.38629 1.38629 1.38629 1.38629
11606 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11607 40 0.23862 2.84929 2.43386 2.70756 40 - -
11608 1.38629 1.38629 1.38629 1.38629
11609 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11610 41 2.53331 3.02441 0.20344 2.88069 41 - -
11611 1.38629 1.38629 1.38629 1.38629
11612 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11613 42 2.81865 0.23582 2.88868 2.35662 42 - -
11614 1.38629 1.38629 1.38629 1.38629
11615 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11616 43 0.23862 2.84929 2.43386 2.70756 43 - -
11617 1.38629 1.38629 1.38629 1.38629
11618 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11619 44 2.57915 2.25909 2.64442 0.28946 44 - -
11620 1.38629 1.38629 1.38629 1.38629
11621 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11622 45 0.23862 2.84929 2.43386 2.70756 45 - -
11623 1.38629 1.38629 1.38629 1.38629
11624 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
11625 //
11626 HMMER3/b [3.0 | March 2010]
11627 NAME 4_LSU_Alveolata_4_LSU_start_ninea_long
11628 LENG 45
11629 ALPH DNA
11630 RF no
11631 CS no
11632 MAP yes
11633 DATE Thu Mar 1 14:41:00 2012
11634 NSEQ 7
11635 EFFN 3.790527
11636 CKSUM 4206231787
11637 STATS LOCAL MSV -7.2724 0.71933
11638 STATS LOCAL VITERBI -7.6144 0.71933
11639 STATS LOCAL FORWARD -4.2349 0.71933
11640 HMM A C G T
11641 m->m m->i m->d i->m i->i d->m d->d
11642 COMPO 1.36808 1.51781 1.52107 1.17852
11643 1.38629 1.38629 1.38629 1.38629
11644 0.03396 4.09276 4.09276 1.46634 0.26236 0.00000 *
11645 1 0.89002 1.69049 2.09997 1.26421 1 - -
11646 1.38629 1.38629 1.38629 1.38629
11647 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11648 2 2.66645 0.48139 2.73592 1.39537 2 - -
11649 1.38629 1.38629 1.38629 1.38629
11650 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11651 3 2.88838 1.91919 2.94521 0.29435 3 - -
11652 1.38629 1.38629 1.38629 1.38629
11653 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11654 4 2.65817 1.47680 2.72315 0.45273 4 - -
11655 1.38629 1.38629 1.38629 1.38629
11656 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11657 5 3.23093 2.68543 3.27356 0.15734 5 - -
11658 1.38629 1.38629 1.38629 1.38629
11659 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11660 6 3.23093 2.68543 3.27356 0.15734 6 - -
11661 1.38629 1.38629 1.38629 1.38629
11662 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11663 7 3.59213 0.11274 3.63458 2.94342 7 - -
11664 1.38629 1.38629 1.38629 1.38629
11665 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11666 8 3.59213 0.11274 3.63458 2.94342 8 - -
11667 1.38629 1.38629 1.38629 1.38629
11668 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11669 9 3.23093 2.68543 3.27356 0.15734 9 - -
11670 1.38629 1.38629 1.38629 1.38629
11671 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11672 10 3.04202 3.72657 0.10304 3.64608 10 - -
11673 1.38629 1.38629 1.38629 1.38629
11674 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11675 11 0.12486 3.51901 2.89141 3.43411 11 - -
11676 1.38629 1.38629 1.38629 1.38629
11677 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11678 12 3.04202 3.72657 0.10304 3.64608 12 - -
11679 1.38629 1.38629 1.38629 1.38629
11680 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11681 13 0.12486 3.51901 2.89141 3.43411 13 - -
11682 1.38629 1.38629 1.38629 1.38629
11683 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11684 14 3.23093 2.68543 3.27356 0.15734 14 - -
11685 1.38629 1.38629 1.38629 1.38629
11686 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11687 15 3.04202 3.72657 0.10304 3.64608 15 - -
11688 1.38629 1.38629 1.38629 1.38629
11689 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11690 16 3.23093 2.68543 3.27356 0.15734 16 - -
11691 1.38629 1.38629 1.38629 1.38629
11692 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11693 17 0.12486 3.51901 2.89141 3.43411 17 - -
11694 1.38629 1.38629 1.38629 1.38629
11695 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11696 18 3.59213 0.11274 3.63458 2.94342 18 - -
11697 1.38629 1.38629 1.38629 1.38629
11698 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11699 19 3.04202 3.72657 0.10304 3.64608 19 - -
11700 1.38629 1.38629 1.38629 1.38629
11701 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11702 20 0.12486 3.51901 2.89141 3.43411 20 - -
11703 1.38629 1.38629 1.38629 1.38629
11704 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11705 21 3.04202 3.72657 0.10304 3.64608 21 - -
11706 1.38629 1.38629 1.38629 1.38629
11707 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11708 22 3.04202 3.72657 0.10304 3.64608 22 - -
11709 1.38629 1.38629 1.38629 1.38629
11710 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11711 23 3.59213 0.11274 3.63458 2.94342 23 - -
11712 1.38629 1.38629 1.38629 1.38629
11713 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11714 24 3.23093 2.68543 3.27356 0.15734 24 - -
11715 1.38629 1.38629 1.38629 1.38629
11716 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11717 25 0.12486 3.51901 2.89141 3.43411 25 - -
11718 1.38629 1.38629 1.38629 1.38629
11719 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11720 26 3.23093 2.68543 3.27356 0.15734 26 - -
11721 1.38629 1.38629 1.38629 1.38629
11722 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11723 27 3.59213 0.11274 3.63458 2.94342 27 - -
11724 1.38629 1.38629 1.38629 1.38629
11725 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11726 28 3.59213 0.11274 3.63458 2.94342 28 - -
11727 1.38629 1.38629 1.38629 1.38629
11728 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11729 29 3.04202 3.72657 0.10304 3.64608 29 - -
11730 1.38629 1.38629 1.38629 1.38629
11731 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11732 30 3.59213 0.11274 3.63458 2.94342 30 - -
11733 1.38629 1.38629 1.38629 1.38629
11734 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11735 31 3.23093 2.68543 3.27356 0.15734 31 - -
11736 1.38629 1.38629 1.38629 1.38629
11737 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11738 32 3.04202 3.72657 0.10304 3.64608 32 - -
11739 1.38629 1.38629 1.38629 1.38629
11740 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11741 33 0.12486 3.51901 2.89141 3.43411 33 - -
11742 1.38629 1.38629 1.38629 1.38629
11743 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11744 34 0.12486 3.51901 2.89141 3.43411 34 - -
11745 1.38629 1.38629 1.38629 1.38629
11746 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11747 35 3.23093 2.68543 3.27356 0.15734 35 - -
11748 1.38629 1.38629 1.38629 1.38629
11749 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11750 36 3.23093 2.68543 3.27356 0.15734 36 - -
11751 1.38629 1.38629 1.38629 1.38629
11752 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11753 37 3.23093 2.68543 3.27356 0.15734 37 - -
11754 1.38629 1.38629 1.38629 1.38629
11755 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11756 38 0.12486 3.51901 2.89141 3.43411 38 - -
11757 1.38629 1.38629 1.38629 1.38629
11758 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11759 39 0.12486 3.51901 2.89141 3.43411 39 - -
11760 1.38629 1.38629 1.38629 1.38629
11761 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11762 40 3.04202 3.72657 0.10304 3.64608 40 - -
11763 1.38629 1.38629 1.38629 1.38629
11764 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11765 41 3.59213 0.11274 3.63458 2.94342 41 - -
11766 1.38629 1.38629 1.38629 1.38629
11767 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11768 42 0.12486 3.51901 2.89141 3.43411 42 - -
11769 1.38629 1.38629 1.38629 1.38629
11770 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11771 43 3.23093 2.68543 3.27356 0.15734 43 - -
11772 1.38629 1.38629 1.38629 1.38629
11773 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11774 44 0.12486 3.51901 2.89141 3.43411 44 - -
11775 1.38629 1.38629 1.38629 1.38629
11776 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547
11777 45 3.23093 2.68543 3.27356 0.15734 45 - -
11778 1.38629 1.38629 1.38629 1.38629
11779 0.01712 4.07593 * 1.46634 0.26236 0.00000 *
11780 //
11781 HMMER3/b [3.0 | March 2010]
11782 NAME 4_LSU_Alveolata_4_LSU_start_nineb_long
11783 LENG 45
11784 ALPH DNA
11785 RF no
11786 CS no
11787 MAP yes
11788 DATE Thu Mar 1 14:41:05 2012
11789 NSEQ 3
11790 EFFN 3.000000
11791 CKSUM 3743554959
11792 STATS LOCAL MSV -8.1311 0.72123
11793 STATS LOCAL VITERBI -7.9839 0.72123
11794 STATS LOCAL FORWARD -4.0562 0.72123
11795 HMM A C G T
11796 m->m m->i m->d i->m i->i d->m d->d
11797 COMPO 1.30454 1.51465 1.59551 1.18413
11798 1.38629 1.38629 1.38629 1.38629
11799 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
11800 1 0.70020 2.19823 2.14894 1.28770 1 - -
11801 1.38629 1.38629 1.38629 1.38629
11802 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11803 2 2.97980 2.52563 3.03204 0.19727 2 - -
11804 1.38629 1.38629 1.38629 1.38629
11805 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11806 3 2.97980 2.52563 3.03204 0.19727 3 - -
11807 1.38629 1.38629 1.38629 1.38629
11808 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11809 4 2.97980 2.52563 3.03204 0.19727 4 - -
11810 1.38629 1.38629 1.38629 1.38629
11811 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11812 5 2.97980 2.52563 3.03204 0.19727 5 - -
11813 1.38629 1.38629 1.38629 1.38629
11814 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11815 6 2.97980 2.52563 3.03204 0.19727 6 - -
11816 1.38629 1.38629 1.38629 1.38629
11817 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11818 7 3.30705 0.14631 3.36166 2.73626 7 - -
11819 1.38629 1.38629 1.38629 1.38629
11820 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11821 8 3.30705 0.14631 3.36166 2.73626 8 - -
11822 1.38629 1.38629 1.38629 1.38629
11823 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11824 9 2.97980 2.52563 3.03204 0.19727 9 - -
11825 1.38629 1.38629 1.38629 1.38629
11826 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11827 10 2.86982 3.47591 0.13017 3.36931 10 - -
11828 1.38629 1.38629 1.38629 1.38629
11829 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11830 11 0.15719 3.27118 2.73043 3.16274 11 - -
11831 1.38629 1.38629 1.38629 1.38629
11832 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11833 12 0.15719 3.27118 2.73043 3.16274 12 - -
11834 1.38629 1.38629 1.38629 1.38629
11835 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11836 13 0.15719 3.27118 2.73043 3.16274 13 - -
11837 1.38629 1.38629 1.38629 1.38629
11838 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11839 14 2.97980 2.52563 3.03204 0.19727 14 - -
11840 1.38629 1.38629 1.38629 1.38629
11841 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11842 15 2.97980 2.52563 3.03204 0.19727 15 - -
11843 1.38629 1.38629 1.38629 1.38629
11844 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11845 16 2.86982 3.47591 0.13017 3.36931 16 - -
11846 1.38629 1.38629 1.38629 1.38629
11847 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11848 17 0.15719 3.27118 2.73043 3.16274 17 - -
11849 1.38629 1.38629 1.38629 1.38629
11850 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11851 18 3.30705 0.14631 3.36166 2.73626 18 - -
11852 1.38629 1.38629 1.38629 1.38629
11853 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11854 19 2.86982 3.47591 0.13017 3.36931 19 - -
11855 1.38629 1.38629 1.38629 1.38629
11856 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11857 20 0.15719 3.27118 2.73043 3.16274 20 - -
11858 1.38629 1.38629 1.38629 1.38629
11859 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11860 21 2.86982 3.47591 0.13017 3.36931 21 - -
11861 1.38629 1.38629 1.38629 1.38629
11862 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11863 22 2.86982 3.47591 0.13017 3.36931 22 - -
11864 1.38629 1.38629 1.38629 1.38629
11865 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11866 23 3.30705 0.14631 3.36166 2.73626 23 - -
11867 1.38629 1.38629 1.38629 1.38629
11868 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11869 24 3.30705 0.14631 3.36166 2.73626 24 - -
11870 1.38629 1.38629 1.38629 1.38629
11871 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11872 25 0.15719 3.27118 2.73043 3.16274 25 - -
11873 1.38629 1.38629 1.38629 1.38629
11874 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11875 26 2.97980 2.52563 3.03204 0.19727 26 - -
11876 1.38629 1.38629 1.38629 1.38629
11877 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11878 27 3.30705 0.14631 3.36166 2.73626 27 - -
11879 1.38629 1.38629 1.38629 1.38629
11880 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11881 28 3.30705 0.14631 3.36166 2.73626 28 - -
11882 1.38629 1.38629 1.38629 1.38629
11883 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11884 29 2.86982 3.47591 0.13017 3.36931 29 - -
11885 1.38629 1.38629 1.38629 1.38629
11886 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11887 30 3.30705 0.14631 3.36166 2.73626 30 - -
11888 1.38629 1.38629 1.38629 1.38629
11889 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11890 31 2.97980 2.52563 3.03204 0.19727 31 - -
11891 1.38629 1.38629 1.38629 1.38629
11892 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11893 32 2.86982 3.47591 0.13017 3.36931 32 - -
11894 1.38629 1.38629 1.38629 1.38629
11895 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11896 33 0.15719 3.27118 2.73043 3.16274 33 - -
11897 1.38629 1.38629 1.38629 1.38629
11898 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11899 34 0.15719 3.27118 2.73043 3.16274 34 - -
11900 1.38629 1.38629 1.38629 1.38629
11901 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11902 35 2.97980 2.52563 3.03204 0.19727 35 - -
11903 1.38629 1.38629 1.38629 1.38629
11904 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11905 36 2.97980 2.52563 3.03204 0.19727 36 - -
11906 1.38629 1.38629 1.38629 1.38629
11907 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11908 37 2.97980 2.52563 3.03204 0.19727 37 - -
11909 1.38629 1.38629 1.38629 1.38629
11910 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11911 38 0.15719 3.27118 2.73043 3.16274 38 - -
11912 1.38629 1.38629 1.38629 1.38629
11913 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11914 39 0.15719 3.27118 2.73043 3.16274 39 - -
11915 1.38629 1.38629 1.38629 1.38629
11916 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11917 40 2.86982 3.47591 0.13017 3.36931 40 - -
11918 1.38629 1.38629 1.38629 1.38629
11919 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11920 41 3.30705 0.14631 3.36166 2.73626 41 - -
11921 1.38629 1.38629 1.38629 1.38629
11922 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11923 42 0.15719 3.27118 2.73043 3.16274 42 - -
11924 1.38629 1.38629 1.38629 1.38629
11925 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11926 43 2.97980 2.52563 3.03204 0.19727 43 - -
11927 1.38629 1.38629 1.38629 1.38629
11928 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11929 44 0.15719 3.27118 2.73043 3.16274 44 - -
11930 1.38629 1.38629 1.38629 1.38629
11931 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
11932 45 2.97980 2.52563 3.03204 0.19727 45 - -
11933 1.38629 1.38629 1.38629 1.38629
11934 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
11935 //
11936 HMMER3/b [3.0 | March 2010]
11937 NAME 4_LSU_Alveolata_4_LSU_start_onea_long
11938 LENG 45
11939 ALPH DNA
11940 RF no
11941 CS no
11942 MAP yes
11943 DATE Thu Mar 1 14:39:33 2012
11944 NSEQ 2
11945 EFFN 2.000000
11946 CKSUM 781382756
11947 STATS LOCAL MSV -7.5283 0.72797
11948 STATS LOCAL VITERBI -8.3724 0.72797
11949 STATS LOCAL FORWARD -3.0815 0.72797
11950 HMM A C G T
11951 m->m m->i m->d i->m i->i d->m d->d
11952 COMPO 1.09830 1.60161 1.42113 1.49812
11953 1.38629 1.38629 1.38629 1.38629
11954 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
11955 1 2.53331 3.02441 0.20344 2.88069 1 - -
11956 1.38629 1.38629 1.38629 1.38629
11957 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11958 2 2.81865 0.23582 2.88868 2.35662 2 - -
11959 1.38629 1.38629 1.38629 1.38629
11960 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11961 3 2.57915 2.25909 2.64442 0.28946 3 - -
11962 1.38629 1.38629 1.38629 1.38629
11963 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11964 4 0.23862 2.84929 2.43386 2.70756 4 - -
11965 1.38629 1.38629 1.38629 1.38629
11966 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11967 5 0.23862 2.84929 2.43386 2.70756 5 - -
11968 1.38629 1.38629 1.38629 1.38629
11969 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11970 6 2.53331 3.02441 0.20344 2.88069 6 - -
11971 1.38629 1.38629 1.38629 1.38629
11972 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11973 7 2.81865 0.23582 2.88868 2.35662 7 - -
11974 1.38629 1.38629 1.38629 1.38629
11975 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11976 8 2.53331 3.02441 0.20344 2.88069 8 - -
11977 1.38629 1.38629 1.38629 1.38629
11978 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11979 9 2.57915 2.25909 2.64442 0.28946 9 - -
11980 1.38629 1.38629 1.38629 1.38629
11981 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11982 10 2.53331 3.02441 0.20344 2.88069 10 - -
11983 1.38629 1.38629 1.38629 1.38629
11984 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11985 11 0.23862 2.84929 2.43386 2.70756 11 - -
11986 1.38629 1.38629 1.38629 1.38629
11987 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11988 12 0.23862 2.84929 2.43386 2.70756 12 - -
11989 1.38629 1.38629 1.38629 1.38629
11990 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11991 13 2.53331 3.02441 0.20344 2.88069 13 - -
11992 1.38629 1.38629 1.38629 1.38629
11993 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11994 14 2.57915 2.25909 2.64442 0.28946 14 - -
11995 1.38629 1.38629 1.38629 1.38629
11996 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
11997 15 2.53331 3.02441 0.20344 2.88069 15 - -
11998 1.38629 1.38629 1.38629 1.38629
11999 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12000 16 0.23862 2.84929 2.43386 2.70756 16 - -
12001 1.38629 1.38629 1.38629 1.38629
12002 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12003 17 0.23862 2.84929 2.43386 2.70756 17 - -
12004 1.38629 1.38629 1.38629 1.38629
12005 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12006 18 2.53331 3.02441 0.20344 2.88069 18 - -
12007 1.38629 1.38629 1.38629 1.38629
12008 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12009 19 2.81865 0.23582 2.88868 2.35662 19 - -
12010 1.38629 1.38629 1.38629 1.38629
12011 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12012 20 0.23862 2.84929 2.43386 2.70756 20 - -
12013 1.38629 1.38629 1.38629 1.38629
12014 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12015 21 2.81865 0.23582 2.88868 2.35662 21 - -
12016 1.38629 1.38629 1.38629 1.38629
12017 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12018 22 0.23862 2.84929 2.43386 2.70756 22 - -
12019 1.38629 1.38629 1.38629 1.38629
12020 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12021 23 2.57915 2.25909 2.64442 0.28946 23 - -
12022 1.38629 1.38629 1.38629 1.38629
12023 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12024 24 0.23862 2.84929 2.43386 2.70756 24 - -
12025 1.38629 1.38629 1.38629 1.38629
12026 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12027 25 0.23862 2.84929 2.43386 2.70756 25 - -
12028 1.38629 1.38629 1.38629 1.38629
12029 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12030 26 0.23862 2.84929 2.43386 2.70756 26 - -
12031 1.38629 1.38629 1.38629 1.38629
12032 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12033 27 2.81865 0.23582 2.88868 2.35662 27 - -
12034 1.38629 1.38629 1.38629 1.38629
12035 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12036 28 2.81865 0.23582 2.88868 2.35662 28 - -
12037 1.38629 1.38629 1.38629 1.38629
12038 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12039 29 2.57915 2.25909 2.64442 0.28946 29 - -
12040 1.38629 1.38629 1.38629 1.38629
12041 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12042 30 2.53331 3.02441 0.20344 2.88069 30 - -
12043 1.38629 1.38629 1.38629 1.38629
12044 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12045 31 2.81865 0.23582 2.88868 2.35662 31 - -
12046 1.38629 1.38629 1.38629 1.38629
12047 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12048 32 2.57915 2.25909 2.64442 0.28946 32 - -
12049 1.38629 1.38629 1.38629 1.38629
12050 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12051 33 2.53331 3.02441 0.20344 2.88069 33 - -
12052 1.38629 1.38629 1.38629 1.38629
12053 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12054 34 0.23862 2.84929 2.43386 2.70756 34 - -
12055 1.38629 1.38629 1.38629 1.38629
12056 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12057 35 0.23862 2.84929 2.43386 2.70756 35 - -
12058 1.38629 1.38629 1.38629 1.38629
12059 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12060 36 2.57915 2.25909 2.64442 0.28946 36 - -
12061 1.38629 1.38629 1.38629 1.38629
12062 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12063 37 2.57915 2.25909 2.64442 0.28946 37 - -
12064 1.38629 1.38629 1.38629 1.38629
12065 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12066 38 2.57915 2.25909 2.64442 0.28946 38 - -
12067 1.38629 1.38629 1.38629 1.38629
12068 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12069 39 0.23862 2.84929 2.43386 2.70756 39 - -
12070 1.38629 1.38629 1.38629 1.38629
12071 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12072 40 0.23862 2.84929 2.43386 2.70756 40 - -
12073 1.38629 1.38629 1.38629 1.38629
12074 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12075 41 2.53331 3.02441 0.20344 2.88069 41 - -
12076 1.38629 1.38629 1.38629 1.38629
12077 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12078 42 2.81865 0.23582 2.88868 2.35662 42 - -
12079 1.38629 1.38629 1.38629 1.38629
12080 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12081 43 0.23862 2.84929 2.43386 2.70756 43 - -
12082 1.38629 1.38629 1.38629 1.38629
12083 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12084 44 2.57915 2.25909 2.64442 0.28946 44 - -
12085 1.38629 1.38629 1.38629 1.38629
12086 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12087 45 0.23862 2.84929 2.43386 2.70756 45 - -
12088 1.38629 1.38629 1.38629 1.38629
12089 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
12090 //
12091 HMMER3/b [3.0 | March 2010]
12092 NAME 4_LSU_Alveolata_4_LSU_start_oneb_long
12093 LENG 45
12094 ALPH DNA
12095 RF no
12096 CS no
12097 MAP yes
12098 DATE Thu Mar 1 14:39:39 2012
12099 NSEQ 2
12100 EFFN 2.000000
12101 CKSUM 1194618091
12102 STATS LOCAL MSV -7.4605 0.72829
12103 STATS LOCAL VITERBI -8.3928 0.72829
12104 STATS LOCAL FORWARD -3.2424 0.72829
12105 HMM A C G T
12106 m->m m->i m->d i->m i->i d->m d->d
12107 COMPO 1.09633 1.66831 1.48615 1.38192
12108 1.38629 1.38629 1.38629 1.38629
12109 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
12110 1 0.23862 2.84929 2.43386 2.70756 1 - -
12111 1.38629 1.38629 1.38629 1.38629
12112 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12113 2 2.57915 2.25909 2.64442 0.28946 2 - -
12114 1.38629 1.38629 1.38629 1.38629
12115 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12116 3 2.57915 2.25909 2.64442 0.28946 3 - -
12117 1.38629 1.38629 1.38629 1.38629
12118 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12119 4 2.57915 2.25909 2.64442 0.28946 4 - -
12120 1.38629 1.38629 1.38629 1.38629
12121 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12122 5 2.53331 3.02441 0.20344 2.88069 5 - -
12123 1.38629 1.38629 1.38629 1.38629
12124 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12125 6 2.53331 3.02441 0.20344 2.88069 6 - -
12126 1.38629 1.38629 1.38629 1.38629
12127 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12128 7 2.81865 0.23582 2.88868 2.35662 7 - -
12129 1.38629 1.38629 1.38629 1.38629
12130 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12131 8 0.23862 2.84929 2.43386 2.70756 8 - -
12132 1.38629 1.38629 1.38629 1.38629
12133 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12134 9 2.57915 2.25909 2.64442 0.28946 9 - -
12135 1.38629 1.38629 1.38629 1.38629
12136 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12137 10 2.53331 3.02441 0.20344 2.88069 10 - -
12138 1.38629 1.38629 1.38629 1.38629
12139 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12140 11 0.23862 2.84929 2.43386 2.70756 11 - -
12141 1.38629 1.38629 1.38629 1.38629
12142 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12143 12 0.23862 2.84929 2.43386 2.70756 12 - -
12144 1.38629 1.38629 1.38629 1.38629
12145 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12146 13 2.53331 3.02441 0.20344 2.88069 13 - -
12147 1.38629 1.38629 1.38629 1.38629
12148 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12149 14 2.57915 2.25909 2.64442 0.28946 14 - -
12150 1.38629 1.38629 1.38629 1.38629
12151 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12152 15 2.53331 3.02441 0.20344 2.88069 15 - -
12153 1.38629 1.38629 1.38629 1.38629
12154 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12155 16 0.23862 2.84929 2.43386 2.70756 16 - -
12156 1.38629 1.38629 1.38629 1.38629
12157 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12158 17 0.23862 2.84929 2.43386 2.70756 17 - -
12159 1.38629 1.38629 1.38629 1.38629
12160 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12161 18 2.53331 3.02441 0.20344 2.88069 18 - -
12162 1.38629 1.38629 1.38629 1.38629
12163 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12164 19 2.81865 0.23582 2.88868 2.35662 19 - -
12165 1.38629 1.38629 1.38629 1.38629
12166 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12167 20 0.23862 2.84929 2.43386 2.70756 20 - -
12168 1.38629 1.38629 1.38629 1.38629
12169 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12170 21 2.81865 0.23582 2.88868 2.35662 21 - -
12171 1.38629 1.38629 1.38629 1.38629
12172 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12173 22 0.23862 2.84929 2.43386 2.70756 22 - -
12174 1.38629 1.38629 1.38629 1.38629
12175 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12176 23 2.57915 2.25909 2.64442 0.28946 23 - -
12177 1.38629 1.38629 1.38629 1.38629
12178 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12179 24 0.23862 2.84929 2.43386 2.70756 24 - -
12180 1.38629 1.38629 1.38629 1.38629
12181 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12182 25 0.23862 2.84929 2.43386 2.70756 25 - -
12183 1.38629 1.38629 1.38629 1.38629
12184 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12185 26 0.23862 2.84929 2.43386 2.70756 26 - -
12186 1.38629 1.38629 1.38629 1.38629
12187 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12188 27 2.81865 0.23582 2.88868 2.35662 27 - -
12189 1.38629 1.38629 1.38629 1.38629
12190 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12191 28 2.81865 0.23582 2.88868 2.35662 28 - -
12192 1.38629 1.38629 1.38629 1.38629
12193 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12194 29 2.57915 2.25909 2.64442 0.28946 29 - -
12195 1.38629 1.38629 1.38629 1.38629
12196 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12197 30 2.53331 3.02441 0.20344 2.88069 30 - -
12198 1.38629 1.38629 1.38629 1.38629
12199 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12200 31 2.81865 0.23582 2.88868 2.35662 31 - -
12201 1.38629 1.38629 1.38629 1.38629
12202 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12203 32 2.57915 2.25909 2.64442 0.28946 32 - -
12204 1.38629 1.38629 1.38629 1.38629
12205 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12206 33 2.53331 3.02441 0.20344 2.88069 33 - -
12207 1.38629 1.38629 1.38629 1.38629
12208 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12209 34 0.23862 2.84929 2.43386 2.70756 34 - -
12210 1.38629 1.38629 1.38629 1.38629
12211 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12212 35 0.23862 2.84929 2.43386 2.70756 35 - -
12213 1.38629 1.38629 1.38629 1.38629
12214 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12215 36 2.57915 2.25909 2.64442 0.28946 36 - -
12216 1.38629 1.38629 1.38629 1.38629
12217 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12218 37 2.57915 2.25909 2.64442 0.28946 37 - -
12219 1.38629 1.38629 1.38629 1.38629
12220 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12221 38 2.57915 2.25909 2.64442 0.28946 38 - -
12222 1.38629 1.38629 1.38629 1.38629
12223 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12224 39 0.23862 2.84929 2.43386 2.70756 39 - -
12225 1.38629 1.38629 1.38629 1.38629
12226 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12227 40 0.23862 2.84929 2.43386 2.70756 40 - -
12228 1.38629 1.38629 1.38629 1.38629
12229 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12230 41 2.53331 3.02441 0.20344 2.88069 41 - -
12231 1.38629 1.38629 1.38629 1.38629
12232 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12233 42 2.81865 0.23582 2.88868 2.35662 42 - -
12234 1.38629 1.38629 1.38629 1.38629
12235 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12236 43 0.23862 2.84929 2.43386 2.70756 43 - -
12237 1.38629 1.38629 1.38629 1.38629
12238 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12239 44 2.57915 2.25909 2.64442 0.28946 44 - -
12240 1.38629 1.38629 1.38629 1.38629
12241 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12242 45 0.23862 2.84929 2.43386 2.70756 45 - -
12243 1.38629 1.38629 1.38629 1.38629
12244 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
12245 //
12246 HMMER3/b [3.0 | March 2010]
12247 NAME 4_LSU_Alveolata_4_LSU_start_onec_long
12248 LENG 45
12249 ALPH DNA
12250 RF no
12251 CS no
12252 MAP yes
12253 DATE Thu Mar 1 14:39:45 2012
12254 NSEQ 2
12255 EFFN 2.000000
12256 CKSUM 620831756
12257 STATS LOCAL MSV -7.6900 0.72827
12258 STATS LOCAL VITERBI -8.3711 0.72827
12259 STATS LOCAL FORWARD -3.1028 0.72827
12260 HMM A C G T
12261 m->m m->i m->d i->m i->i d->m d->d
12262 COMPO 1.18992 1.52066 1.49124 1.37796
12263 1.38629 1.38629 1.38629 1.38629
12264 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
12265 1 2.81865 0.23582 2.88868 2.35662 1 - -
12266 1.38629 1.38629 1.38629 1.38629
12267 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12268 2 2.57915 2.25909 2.64442 0.28946 2 - -
12269 1.38629 1.38629 1.38629 1.38629
12270 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12271 3 2.53331 3.02441 0.20344 2.88069 3 - -
12272 1.38629 1.38629 1.38629 1.38629
12273 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12274 4 2.57915 2.25909 2.64442 0.28946 4 - -
12275 1.38629 1.38629 1.38629 1.38629
12276 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12277 5 2.57915 2.25909 2.64442 0.28946 5 - -
12278 1.38629 1.38629 1.38629 1.38629
12279 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12280 6 2.53331 3.02441 0.20344 2.88069 6 - -
12281 1.38629 1.38629 1.38629 1.38629
12282 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12283 7 2.81865 0.23582 2.88868 2.35662 7 - -
12284 1.38629 1.38629 1.38629 1.38629
12285 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12286 8 0.23862 2.84929 2.43386 2.70756 8 - -
12287 1.38629 1.38629 1.38629 1.38629
12288 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12289 9 2.57915 2.25909 2.64442 0.28946 9 - -
12290 1.38629 1.38629 1.38629 1.38629
12291 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12292 10 2.53331 3.02441 0.20344 2.88069 10 - -
12293 1.38629 1.38629 1.38629 1.38629
12294 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12295 11 0.23862 2.84929 2.43386 2.70756 11 - -
12296 1.38629 1.38629 1.38629 1.38629
12297 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12298 12 0.23862 2.84929 2.43386 2.70756 12 - -
12299 1.38629 1.38629 1.38629 1.38629
12300 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12301 13 2.53331 3.02441 0.20344 2.88069 13 - -
12302 1.38629 1.38629 1.38629 1.38629
12303 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12304 14 2.57915 2.25909 2.64442 0.28946 14 - -
12305 1.38629 1.38629 1.38629 1.38629
12306 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12307 15 2.53331 3.02441 0.20344 2.88069 15 - -
12308 1.38629 1.38629 1.38629 1.38629
12309 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12310 16 0.23862 2.84929 2.43386 2.70756 16 - -
12311 1.38629 1.38629 1.38629 1.38629
12312 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12313 17 0.23862 2.84929 2.43386 2.70756 17 - -
12314 1.38629 1.38629 1.38629 1.38629
12315 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12316 18 2.53331 3.02441 0.20344 2.88069 18 - -
12317 1.38629 1.38629 1.38629 1.38629
12318 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12319 19 2.81865 0.23582 2.88868 2.35662 19 - -
12320 1.38629 1.38629 1.38629 1.38629
12321 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12322 20 0.23862 2.84929 2.43386 2.70756 20 - -
12323 1.38629 1.38629 1.38629 1.38629
12324 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12325 21 2.81865 0.23582 2.88868 2.35662 21 - -
12326 1.38629 1.38629 1.38629 1.38629
12327 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12328 22 0.23862 2.84929 2.43386 2.70756 22 - -
12329 1.38629 1.38629 1.38629 1.38629
12330 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12331 23 2.57915 2.25909 2.64442 0.28946 23 - -
12332 1.38629 1.38629 1.38629 1.38629
12333 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12334 24 0.23862 2.84929 2.43386 2.70756 24 - -
12335 1.38629 1.38629 1.38629 1.38629
12336 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12337 25 2.81865 0.23582 2.88868 2.35662 25 - -
12338 1.38629 1.38629 1.38629 1.38629
12339 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12340 26 0.23862 2.84929 2.43386 2.70756 26 - -
12341 1.38629 1.38629 1.38629 1.38629
12342 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12343 27 2.81865 0.23582 2.88868 2.35662 27 - -
12344 1.38629 1.38629 1.38629 1.38629
12345 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12346 28 2.81865 0.23582 2.88868 2.35662 28 - -
12347 1.38629 1.38629 1.38629 1.38629
12348 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12349 29 2.57915 2.25909 2.64442 0.28946 29 - -
12350 1.38629 1.38629 1.38629 1.38629
12351 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12352 30 2.53331 3.02441 0.20344 2.88069 30 - -
12353 1.38629 1.38629 1.38629 1.38629
12354 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12355 31 2.81865 0.23582 2.88868 2.35662 31 - -
12356 1.38629 1.38629 1.38629 1.38629
12357 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12358 32 2.57915 2.25909 2.64442 0.28946 32 - -
12359 1.38629 1.38629 1.38629 1.38629
12360 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12361 33 2.53331 3.02441 0.20344 2.88069 33 - -
12362 1.38629 1.38629 1.38629 1.38629
12363 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12364 34 0.23862 2.84929 2.43386 2.70756 34 - -
12365 1.38629 1.38629 1.38629 1.38629
12366 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12367 35 0.23862 2.84929 2.43386 2.70756 35 - -
12368 1.38629 1.38629 1.38629 1.38629
12369 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12370 36 2.57915 2.25909 2.64442 0.28946 36 - -
12371 1.38629 1.38629 1.38629 1.38629
12372 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12373 37 2.57915 2.25909 2.64442 0.28946 37 - -
12374 1.38629 1.38629 1.38629 1.38629
12375 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12376 38 2.57915 2.25909 2.64442 0.28946 38 - -
12377 1.38629 1.38629 1.38629 1.38629
12378 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12379 39 0.23862 2.84929 2.43386 2.70756 39 - -
12380 1.38629 1.38629 1.38629 1.38629
12381 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12382 40 0.23862 2.84929 2.43386 2.70756 40 - -
12383 1.38629 1.38629 1.38629 1.38629
12384 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12385 41 2.53331 3.02441 0.20344 2.88069 41 - -
12386 1.38629 1.38629 1.38629 1.38629
12387 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12388 42 2.81865 0.23582 2.88868 2.35662 42 - -
12389 1.38629 1.38629 1.38629 1.38629
12390 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12391 43 0.23862 2.84929 2.43386 2.70756 43 - -
12392 1.38629 1.38629 1.38629 1.38629
12393 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12394 44 2.57915 2.25909 2.64442 0.28946 44 - -
12395 1.38629 1.38629 1.38629 1.38629
12396 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12397 45 0.23862 2.84929 2.43386 2.70756 45 - -
12398 1.38629 1.38629 1.38629 1.38629
12399 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
12400 //
12401 HMMER3/b [3.0 | March 2010]
12402 NAME 4_LSU_Alveolata_4_LSU_start_oned_long
12403 LENG 45
12404 ALPH DNA
12405 RF no
12406 CS no
12407 MAP yes
12408 DATE Thu Mar 1 14:39:50 2012
12409 NSEQ 2
12410 EFFN 2.000000
12411 CKSUM 3374549336
12412 STATS LOCAL MSV -7.6531 0.72839
12413 STATS LOCAL VITERBI -8.1622 0.72839
12414 STATS LOCAL FORWARD -3.1511 0.72839
12415 HMM A C G T
12416 m->m m->i m->d i->m i->i d->m d->d
12417 COMPO 1.18847 1.58865 1.48979 1.32542
12418 1.38629 1.38629 1.38629 1.38629
12419 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
12420 1 2.57915 2.25909 2.64442 0.28946 1 - -
12421 1.38629 1.38629 1.38629 1.38629
12422 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12423 2 2.57915 2.25909 2.64442 0.28946 2 - -
12424 1.38629 1.38629 1.38629 1.38629
12425 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12426 3 2.53331 3.02441 0.20344 2.88069 3 - -
12427 1.38629 1.38629 1.38629 1.38629
12428 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12429 4 2.57915 2.25909 2.64442 0.28946 4 - -
12430 1.38629 1.38629 1.38629 1.38629
12431 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12432 5 0.23862 2.84929 2.43386 2.70756 5 - -
12433 1.38629 1.38629 1.38629 1.38629
12434 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12435 6 2.53331 3.02441 0.20344 2.88069 6 - -
12436 1.38629 1.38629 1.38629 1.38629
12437 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12438 7 2.81865 0.23582 2.88868 2.35662 7 - -
12439 1.38629 1.38629 1.38629 1.38629
12440 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12441 8 0.23862 2.84929 2.43386 2.70756 8 - -
12442 1.38629 1.38629 1.38629 1.38629
12443 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12444 9 2.57915 2.25909 2.64442 0.28946 9 - -
12445 1.38629 1.38629 1.38629 1.38629
12446 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12447 10 2.53331 3.02441 0.20344 2.88069 10 - -
12448 1.38629 1.38629 1.38629 1.38629
12449 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12450 11 2.81865 0.23582 2.88868 2.35662 11 - -
12451 1.38629 1.38629 1.38629 1.38629
12452 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12453 12 0.23862 2.84929 2.43386 2.70756 12 - -
12454 1.38629 1.38629 1.38629 1.38629
12455 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12456 13 2.53331 3.02441 0.20344 2.88069 13 - -
12457 1.38629 1.38629 1.38629 1.38629
12458 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12459 14 2.57915 2.25909 2.64442 0.28946 14 - -
12460 1.38629 1.38629 1.38629 1.38629
12461 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12462 15 2.53331 3.02441 0.20344 2.88069 15 - -
12463 1.38629 1.38629 1.38629 1.38629
12464 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12465 16 0.23862 2.84929 2.43386 2.70756 16 - -
12466 1.38629 1.38629 1.38629 1.38629
12467 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12468 17 0.23862 2.84929 2.43386 2.70756 17 - -
12469 1.38629 1.38629 1.38629 1.38629
12470 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12471 18 2.53331 3.02441 0.20344 2.88069 18 - -
12472 1.38629 1.38629 1.38629 1.38629
12473 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12474 19 2.81865 0.23582 2.88868 2.35662 19 - -
12475 1.38629 1.38629 1.38629 1.38629
12476 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12477 20 0.23862 2.84929 2.43386 2.70756 20 - -
12478 1.38629 1.38629 1.38629 1.38629
12479 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12480 21 2.81865 0.23582 2.88868 2.35662 21 - -
12481 1.38629 1.38629 1.38629 1.38629
12482 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12483 22 0.23862 2.84929 2.43386 2.70756 22 - -
12484 1.38629 1.38629 1.38629 1.38629
12485 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12486 23 2.57915 2.25909 2.64442 0.28946 23 - -
12487 1.38629 1.38629 1.38629 1.38629
12488 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12489 24 0.23862 2.84929 2.43386 2.70756 24 - -
12490 1.38629 1.38629 1.38629 1.38629
12491 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12492 25 2.57915 2.25909 2.64442 0.28946 25 - -
12493 1.38629 1.38629 1.38629 1.38629
12494 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12495 26 0.23862 2.84929 2.43386 2.70756 26 - -
12496 1.38629 1.38629 1.38629 1.38629
12497 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12498 27 2.81865 0.23582 2.88868 2.35662 27 - -
12499 1.38629 1.38629 1.38629 1.38629
12500 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12501 28 2.81865 0.23582 2.88868 2.35662 28 - -
12502 1.38629 1.38629 1.38629 1.38629
12503 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12504 29 2.57915 2.25909 2.64442 0.28946 29 - -
12505 1.38629 1.38629 1.38629 1.38629
12506 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12507 30 2.53331 3.02441 0.20344 2.88069 30 - -
12508 1.38629 1.38629 1.38629 1.38629
12509 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12510 31 2.81865 0.23582 2.88868 2.35662 31 - -
12511 1.38629 1.38629 1.38629 1.38629
12512 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12513 32 2.57915 2.25909 2.64442 0.28946 32 - -
12514 1.38629 1.38629 1.38629 1.38629
12515 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12516 33 2.53331 3.02441 0.20344 2.88069 33 - -
12517 1.38629 1.38629 1.38629 1.38629
12518 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12519 34 0.23862 2.84929 2.43386 2.70756 34 - -
12520 1.38629 1.38629 1.38629 1.38629
12521 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12522 35 0.23862 2.84929 2.43386 2.70756 35 - -
12523 1.38629 1.38629 1.38629 1.38629
12524 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12525 36 2.57915 2.25909 2.64442 0.28946 36 - -
12526 1.38629 1.38629 1.38629 1.38629
12527 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12528 37 2.57915 2.25909 2.64442 0.28946 37 - -
12529 1.38629 1.38629 1.38629 1.38629
12530 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12531 38 2.57915 2.25909 2.64442 0.28946 38 - -
12532 1.38629 1.38629 1.38629 1.38629
12533 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12534 39 0.23862 2.84929 2.43386 2.70756 39 - -
12535 1.38629 1.38629 1.38629 1.38629
12536 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12537 40 0.23862 2.84929 2.43386 2.70756 40 - -
12538 1.38629 1.38629 1.38629 1.38629
12539 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12540 41 2.53331 3.02441 0.20344 2.88069 41 - -
12541 1.38629 1.38629 1.38629 1.38629
12542 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12543 42 2.81865 0.23582 2.88868 2.35662 42 - -
12544 1.38629 1.38629 1.38629 1.38629
12545 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12546 43 0.23862 2.84929 2.43386 2.70756 43 - -
12547 1.38629 1.38629 1.38629 1.38629
12548 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12549 44 2.57915 2.25909 2.64442 0.28946 44 - -
12550 1.38629 1.38629 1.38629 1.38629
12551 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12552 45 0.23862 2.84929 2.43386 2.70756 45 - -
12553 1.38629 1.38629 1.38629 1.38629
12554 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
12555 //
12556 HMMER3/b [3.0 | March 2010]
12557 NAME 4_LSU_Alveolata_4_LSU_start_seven_long
12558 LENG 45
12559 ALPH DNA
12560 RF no
12561 CS no
12562 MAP yes
12563 DATE Thu Mar 1 14:40:49 2012
12564 NSEQ 2
12565 EFFN 2.000000
12566 CKSUM 3028493390
12567 STATS LOCAL MSV -7.5398 0.72776
12568 STATS LOCAL VITERBI -8.1250 0.72776
12569 STATS LOCAL FORWARD -3.1186 0.72776
12570 HMM A C G T
12571 m->m m->i m->d i->m i->i d->m d->d
12572 COMPO 1.18774 1.47240 1.36573 1.55818
12573 1.38629 1.38629 1.38629 1.38629
12574 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
12575 1 2.53331 3.02441 0.20344 2.88069 1 - -
12576 1.38629 1.38629 1.38629 1.38629
12577 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12578 2 0.23862 2.84929 2.43386 2.70756 2 - -
12579 1.38629 1.38629 1.38629 1.38629
12580 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12581 3 0.23862 2.84929 2.43386 2.70756 3 - -
12582 1.38629 1.38629 1.38629 1.38629
12583 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12584 4 0.23862 2.84929 2.43386 2.70756 4 - -
12585 1.38629 1.38629 1.38629 1.38629
12586 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12587 5 2.53331 3.02441 0.20344 2.88069 5 - -
12588 1.38629 1.38629 1.38629 1.38629
12589 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12590 6 2.53331 3.02441 0.20344 2.88069 6 - -
12591 1.38629 1.38629 1.38629 1.38629
12592 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12593 7 2.81865 0.23582 2.88868 2.35662 7 - -
12594 1.38629 1.38629 1.38629 1.38629
12595 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12596 8 2.81865 0.23582 2.88868 2.35662 8 - -
12597 1.38629 1.38629 1.38629 1.38629
12598 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12599 9 2.57915 2.25909 2.64442 0.28946 9 - -
12600 1.38629 1.38629 1.38629 1.38629
12601 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12602 10 2.53331 3.02441 0.20344 2.88069 10 - -
12603 1.38629 1.38629 1.38629 1.38629
12604 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12605 11 0.23862 2.84929 2.43386 2.70756 11 - -
12606 1.38629 1.38629 1.38629 1.38629
12607 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12608 12 2.53331 3.02441 0.20344 2.88069 12 - -
12609 1.38629 1.38629 1.38629 1.38629
12610 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12611 13 2.81865 0.23582 2.88868 2.35662 13 - -
12612 1.38629 1.38629 1.38629 1.38629
12613 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12614 14 2.57915 2.25909 2.64442 0.28946 14 - -
12615 1.38629 1.38629 1.38629 1.38629
12616 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12617 15 2.57915 2.25909 2.64442 0.28946 15 - -
12618 1.38629 1.38629 1.38629 1.38629
12619 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12620 16 2.53331 3.02441 0.20344 2.88069 16 - -
12621 1.38629 1.38629 1.38629 1.38629
12622 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12623 17 2.53331 3.02441 0.20344 2.88069 17 - -
12624 1.38629 1.38629 1.38629 1.38629
12625 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12626 18 0.23862 2.84929 2.43386 2.70756 18 - -
12627 1.38629 1.38629 1.38629 1.38629
12628 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12629 19 2.81865 0.23582 2.88868 2.35662 19 - -
12630 1.38629 1.38629 1.38629 1.38629
12631 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12632 20 0.23862 2.84929 2.43386 2.70756 20 - -
12633 1.38629 1.38629 1.38629 1.38629
12634 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12635 21 0.23862 2.84929 2.43386 2.70756 21 - -
12636 1.38629 1.38629 1.38629 1.38629
12637 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12638 22 2.53331 3.02441 0.20344 2.88069 22 - -
12639 1.38629 1.38629 1.38629 1.38629
12640 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12641 23 2.53331 3.02441 0.20344 2.88069 23 - -
12642 1.38629 1.38629 1.38629 1.38629
12643 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12644 24 2.81865 0.23582 2.88868 2.35662 24 - -
12645 1.38629 1.38629 1.38629 1.38629
12646 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12647 25 2.57915 2.25909 2.64442 0.28946 25 - -
12648 1.38629 1.38629 1.38629 1.38629
12649 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12650 26 0.23862 2.84929 2.43386 2.70756 26 - -
12651 1.38629 1.38629 1.38629 1.38629
12652 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12653 27 2.81865 0.23582 2.88868 2.35662 27 - -
12654 1.38629 1.38629 1.38629 1.38629
12655 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12656 28 2.81865 0.23582 2.88868 2.35662 28 - -
12657 1.38629 1.38629 1.38629 1.38629
12658 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12659 29 2.81865 0.23582 2.88868 2.35662 29 - -
12660 1.38629 1.38629 1.38629 1.38629
12661 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12662 30 0.23862 2.84929 2.43386 2.70756 30 - -
12663 1.38629 1.38629 1.38629 1.38629
12664 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12665 31 2.81865 0.23582 2.88868 2.35662 31 - -
12666 1.38629 1.38629 1.38629 1.38629
12667 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12668 32 2.57915 2.25909 2.64442 0.28946 32 - -
12669 1.38629 1.38629 1.38629 1.38629
12670 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12671 33 2.53331 3.02441 0.20344 2.88069 33 - -
12672 1.38629 1.38629 1.38629 1.38629
12673 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12674 34 0.23862 2.84929 2.43386 2.70756 34 - -
12675 1.38629 1.38629 1.38629 1.38629
12676 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12677 35 0.23862 2.84929 2.43386 2.70756 35 - -
12678 1.38629 1.38629 1.38629 1.38629
12679 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12680 36 2.57915 2.25909 2.64442 0.28946 36 - -
12681 1.38629 1.38629 1.38629 1.38629
12682 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12683 37 2.57915 2.25909 2.64442 0.28946 37 - -
12684 1.38629 1.38629 1.38629 1.38629
12685 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12686 38 2.57915 2.25909 2.64442 0.28946 38 - -
12687 1.38629 1.38629 1.38629 1.38629
12688 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12689 39 0.23862 2.84929 2.43386 2.70756 39 - -
12690 1.38629 1.38629 1.38629 1.38629
12691 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12692 40 0.23862 2.84929 2.43386 2.70756 40 - -
12693 1.38629 1.38629 1.38629 1.38629
12694 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12695 41 2.53331 3.02441 0.20344 2.88069 41 - -
12696 1.38629 1.38629 1.38629 1.38629
12697 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12698 42 2.81865 0.23582 2.88868 2.35662 42 - -
12699 1.38629 1.38629 1.38629 1.38629
12700 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12701 43 0.23862 2.84929 2.43386 2.70756 43 - -
12702 1.38629 1.38629 1.38629 1.38629
12703 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12704 44 2.57915 2.25909 2.64442 0.28946 44 - -
12705 1.38629 1.38629 1.38629 1.38629
12706 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
12707 45 0.23862 2.84929 2.43386 2.70756 45 - -
12708 1.38629 1.38629 1.38629 1.38629
12709 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
12710 //
12711 HMMER3/b [3.0 | March 2010]
12712 NAME 4_LSU_Alveolata_4_LSU_start_six_long
12713 LENG 45
12714 ALPH DNA
12715 RF no
12716 CS no
12717 MAP yes
12718 DATE Thu Mar 1 14:40:41 2012
12719 NSEQ 10
12720 EFFN 3.530273
12721 CKSUM 1801102075
12722 STATS LOCAL MSV -7.6787 0.71931
12723 STATS LOCAL VITERBI -7.8111 0.71931
12724 STATS LOCAL FORWARD -3.8984 0.71931
12725 HMM A C G T
12726 m->m m->i m->d i->m i->i d->m d->d
12727 COMPO 1.05070 1.31736 1.76014 1.55853
12728 1.38629 1.38629 1.38629 1.38629
12729 0.03553 4.04835 4.04835 1.46634 0.26236 0.00000 *
12730 1 3.15391 2.63661 3.19954 0.16850 1 - -
12731 1.38629 1.38629 1.38629 1.38629
12732 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12733 2 3.15391 2.63661 3.19954 0.16850 2 - -
12734 1.38629 1.38629 1.38629 1.38629
12735 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12736 3 1.71207 2.06815 1.14271 0.98314 3 - -
12737 1.38629 1.38629 1.38629 1.38629
12738 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12739 4 0.23016 3.12439 2.18555 3.01164 4 - -
12740 1.38629 1.38629 1.38629 1.38629
12741 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12742 5 3.50695 0.12174 3.55321 2.88245 5 - -
12743 1.38629 1.38629 1.38629 1.38629
12744 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12745 6 0.13370 3.44448 2.84348 3.35230 6 - -
12746 1.38629 1.38629 1.38629 1.38629
12747 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12748 7 3.50695 0.12174 3.55321 2.88245 7 - -
12749 1.38629 1.38629 1.38629 1.38629
12750 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12751 8 3.50695 0.12174 3.55321 2.88245 8 - -
12752 1.38629 1.38629 1.38629 1.38629
12753 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12754 9 3.15391 2.63661 3.19954 0.16850 9 - -
12755 1.38629 1.38629 1.38629 1.38629
12756 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12757 10 2.99181 3.65250 0.11032 3.56399 10 - -
12758 1.38629 1.38629 1.38629 1.38629
12759 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12760 11 0.13370 3.44448 2.84348 3.35230 11 - -
12761 1.38629 1.38629 1.38629 1.38629
12762 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12763 12 0.13370 3.44448 2.84348 3.35230 12 - -
12764 1.38629 1.38629 1.38629 1.38629
12765 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12766 13 0.13370 3.44448 2.84348 3.35230 13 - -
12767 1.38629 1.38629 1.38629 1.38629
12768 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12769 14 3.15391 2.63661 3.19954 0.16850 14 - -
12770 1.38629 1.38629 1.38629 1.38629
12771 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12772 15 3.50695 0.12174 3.55321 2.88245 15 - -
12773 1.38629 1.38629 1.38629 1.38629
12774 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12775 16 0.13370 3.44448 2.84348 3.35230 16 - -
12776 1.38629 1.38629 1.38629 1.38629
12777 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12778 17 0.13370 3.44448 2.84348 3.35230 17 - -
12779 1.38629 1.38629 1.38629 1.38629
12780 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12781 18 2.99181 3.65250 0.11032 3.56399 18 - -
12782 1.38629 1.38629 1.38629 1.38629
12783 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12784 19 3.50695 0.12174 3.55321 2.88245 19 - -
12785 1.38629 1.38629 1.38629 1.38629
12786 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12787 20 0.13370 3.44448 2.84348 3.35230 20 - -
12788 1.38629 1.38629 1.38629 1.38629
12789 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12790 21 0.13370 3.44448 2.84348 3.35230 21 - -
12791 1.38629 1.38629 1.38629 1.38629
12792 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12793 22 2.99181 3.65250 0.11032 3.56399 22 - -
12794 1.38629 1.38629 1.38629 1.38629
12795 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12796 23 0.13370 3.44448 2.84348 3.35230 23 - -
12797 1.38629 1.38629 1.38629 1.38629
12798 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12799 24 2.07180 2.39292 2.65785 0.33886 24 - -
12800 1.38629 1.38629 1.38629 1.38629
12801 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12802 25 3.50695 0.12174 3.55321 2.88245 25 - -
12803 1.38629 1.38629 1.38629 1.38629
12804 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12805 26 0.13370 3.44448 2.84348 3.35230 26 - -
12806 1.38629 1.38629 1.38629 1.38629
12807 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12808 27 3.50695 0.12174 3.55321 2.88245 27 - -
12809 1.38629 1.38629 1.38629 1.38629
12810 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12811 28 3.50695 0.12174 3.55321 2.88245 28 - -
12812 1.38629 1.38629 1.38629 1.38629
12813 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12814 29 3.50695 0.12174 3.55321 2.88245 29 - -
12815 1.38629 1.38629 1.38629 1.38629
12816 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12817 30 2.99181 3.65250 0.11032 3.56399 30 - -
12818 1.38629 1.38629 1.38629 1.38629
12819 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12820 31 3.50695 0.12174 3.55321 2.88245 31 - -
12821 1.38629 1.38629 1.38629 1.38629
12822 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12823 32 3.15391 2.63661 3.19954 0.16850 32 - -
12824 1.38629 1.38629 1.38629 1.38629
12825 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12826 33 2.99181 3.65250 0.11032 3.56399 33 - -
12827 1.38629 1.38629 1.38629 1.38629
12828 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12829 34 0.13370 3.44448 2.84348 3.35230 34 - -
12830 1.38629 1.38629 1.38629 1.38629
12831 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12832 35 0.13370 3.44448 2.84348 3.35230 35 - -
12833 1.38629 1.38629 1.38629 1.38629
12834 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12835 36 3.50695 0.12174 3.55321 2.88245 36 - -
12836 1.38629 1.38629 1.38629 1.38629
12837 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12838 37 3.15391 2.63661 3.19954 0.16850 37 - -
12839 1.38629 1.38629 1.38629 1.38629
12840 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12841 38 3.15391 2.63661 3.19954 0.16850 38 - -
12842 1.38629 1.38629 1.38629 1.38629
12843 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12844 39 0.13370 3.44448 2.84348 3.35230 39 - -
12845 1.38629 1.38629 1.38629 1.38629
12846 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12847 40 0.13370 3.44448 2.84348 3.35230 40 - -
12848 1.38629 1.38629 1.38629 1.38629
12849 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12850 41 2.99181 3.65250 0.11032 3.56399 41 - -
12851 1.38629 1.38629 1.38629 1.38629
12852 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12853 42 3.50695 0.12174 3.55321 2.88245 42 - -
12854 1.38629 1.38629 1.38629 1.38629
12855 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12856 43 0.13370 3.44448 2.84348 3.35230 43 - -
12857 1.38629 1.38629 1.38629 1.38629
12858 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12859 44 3.15391 2.63661 3.19954 0.16850 44 - -
12860 1.38629 1.38629 1.38629 1.38629
12861 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547
12862 45 0.13370 3.44448 2.84348 3.35230 45 - -
12863 1.38629 1.38629 1.38629 1.38629
12864 0.01792 4.03074 * 1.46634 0.26236 0.00000 *
12865 //
12866 HMMER3/b [3.0 | March 2010]
12867 NAME 4_LSU_Alveolata_4_LSU_start_ten_long
12868 LENG 45
12869 ALPH DNA
12870 RF no
12871 CS no
12872 MAP yes
12873 DATE Thu Mar 1 14:41:15 2012
12874 NSEQ 9
12875 EFFN 3.827637
12876 CKSUM 3971025725
12877 STATS LOCAL MSV -7.3204 0.71932
12878 STATS LOCAL VITERBI -7.7155 0.71932
12879 STATS LOCAL FORWARD -4.1318 0.71932
12880 HMM A C G T
12881 m->m m->i m->d i->m i->i d->m d->d
12882 COMPO 1.23642 1.73329 1.50126 1.17110
12883 1.38629 1.38629 1.38629 1.38629
12884 0.03374 4.09894 4.09894 1.46634 0.26236 0.00000 *
12885 1 3.24149 2.69213 3.28371 0.15587 1 - -
12886 1.38629 1.38629 1.38629 1.38629
12887 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12888 2 3.24149 2.69213 3.28371 0.15587 2 - -
12889 1.38629 1.38629 1.38629 1.38629
12890 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12891 3 0.67762 2.30348 2.25602 1.24654 3 - -
12892 1.38629 1.38629 1.38629 1.38629
12893 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12894 4 3.04875 3.73654 0.10210 3.65714 4 - -
12895 1.38629 1.38629 1.38629 1.38629
12896 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12897 5 3.24149 2.69213 3.28371 0.15587 5 - -
12898 1.38629 1.38629 1.38629 1.38629
12899 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12900 6 3.24149 2.69213 3.28371 0.15587 6 - -
12901 1.38629 1.38629 1.38629 1.38629
12902 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12903 7 3.60365 0.11159 3.64557 2.95161 7 - -
12904 1.38629 1.38629 1.38629 1.38629
12905 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12906 8 3.16295 0.21850 3.22065 2.17116 8 - -
12907 1.38629 1.38629 1.38629 1.38629
12908 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12909 9 3.24149 2.69213 3.28371 0.15587 9 - -
12910 1.38629 1.38629 1.38629 1.38629
12911 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12912 10 3.04875 3.73654 0.10210 3.65714 10 - -
12913 1.38629 1.38629 1.38629 1.38629
12914 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12915 11 0.12371 3.52912 2.89791 3.44523 11 - -
12916 1.38629 1.38629 1.38629 1.38629
12917 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12918 12 3.04875 3.73654 0.10210 3.65714 12 - -
12919 1.38629 1.38629 1.38629 1.38629
12920 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12921 13 0.12371 3.52912 2.89791 3.44523 13 - -
12922 1.38629 1.38629 1.38629 1.38629
12923 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12924 14 3.24149 2.69213 3.28371 0.15587 14 - -
12925 1.38629 1.38629 1.38629 1.38629
12926 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12927 15 3.24149 2.69213 3.28371 0.15587 15 - -
12928 1.38629 1.38629 1.38629 1.38629
12929 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12930 16 3.04875 3.73654 0.10210 3.65714 16 - -
12931 1.38629 1.38629 1.38629 1.38629
12932 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12933 17 3.04875 3.73654 0.10210 3.65714 17 - -
12934 1.38629 1.38629 1.38629 1.38629
12935 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12936 18 3.04875 3.73654 0.10210 3.65714 18 - -
12937 1.38629 1.38629 1.38629 1.38629
12938 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12939 19 3.24149 2.69213 3.28371 0.15587 19 - -
12940 1.38629 1.38629 1.38629 1.38629
12941 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12942 20 3.04875 3.73654 0.10210 3.65714 20 - -
12943 1.38629 1.38629 1.38629 1.38629
12944 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12945 21 0.12371 3.52912 2.89791 3.44523 21 - -
12946 1.38629 1.38629 1.38629 1.38629
12947 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12948 22 3.04875 3.73654 0.10210 3.65714 22 - -
12949 1.38629 1.38629 1.38629 1.38629
12950 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12951 23 0.21841 3.20443 2.20335 3.09683 23 - -
12952 1.38629 1.38629 1.38629 1.38629
12953 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12954 24 2.80375 0.37853 2.87066 1.62006 24 - -
12955 1.38629 1.38629 1.38629 1.38629
12956 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12957 25 2.39794 2.30920 1.65829 0.47918 25 - -
12958 1.38629 1.38629 1.38629 1.38629
12959 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12960 26 0.12371 3.52912 2.89791 3.44523 26 - -
12961 1.38629 1.38629 1.38629 1.38629
12962 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12963 27 3.24149 2.69213 3.28371 0.15587 27 - -
12964 1.38629 1.38629 1.38629 1.38629
12965 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12966 28 3.60365 0.11159 3.64557 2.95161 28 - -
12967 1.38629 1.38629 1.38629 1.38629
12968 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12969 29 3.60365 0.11159 3.64557 2.95161 29 - -
12970 1.38629 1.38629 1.38629 1.38629
12971 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12972 30 0.12371 3.52912 2.89791 3.44523 30 - -
12973 1.38629 1.38629 1.38629 1.38629
12974 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12975 31 3.60365 0.11159 3.64557 2.95161 31 - -
12976 1.38629 1.38629 1.38629 1.38629
12977 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12978 32 3.24149 2.69213 3.28371 0.15587 32 - -
12979 1.38629 1.38629 1.38629 1.38629
12980 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12981 33 3.04875 3.73654 0.10210 3.65714 33 - -
12982 1.38629 1.38629 1.38629 1.38629
12983 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12984 34 0.12371 3.52912 2.89791 3.44523 34 - -
12985 1.38629 1.38629 1.38629 1.38629
12986 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12987 35 0.12371 3.52912 2.89791 3.44523 35 - -
12988 1.38629 1.38629 1.38629 1.38629
12989 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12990 36 3.24149 2.69213 3.28371 0.15587 36 - -
12991 1.38629 1.38629 1.38629 1.38629
12992 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12993 37 3.24149 2.69213 3.28371 0.15587 37 - -
12994 1.38629 1.38629 1.38629 1.38629
12995 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12996 38 3.24149 2.69213 3.28371 0.15587 38 - -
12997 1.38629 1.38629 1.38629 1.38629
12998 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
12999 39 0.12371 3.52912 2.89791 3.44523 39 - -
13000 1.38629 1.38629 1.38629 1.38629
13001 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
13002 40 0.12371 3.52912 2.89791 3.44523 40 - -
13003 1.38629 1.38629 1.38629 1.38629
13004 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
13005 41 0.12371 3.52912 2.89791 3.44523 41 - -
13006 1.38629 1.38629 1.38629 1.38629
13007 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
13008 42 3.60365 0.11159 3.64557 2.95161 42 - -
13009 1.38629 1.38629 1.38629 1.38629
13010 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
13011 43 0.12371 3.52912 2.89791 3.44523 43 - -
13012 1.38629 1.38629 1.38629 1.38629
13013 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
13014 44 3.24149 2.69213 3.28371 0.15587 44 - -
13015 1.38629 1.38629 1.38629 1.38629
13016 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547
13017 45 0.12371 3.52912 2.89791 3.44523 45 - -
13018 1.38629 1.38629 1.38629 1.38629
13019 0.01701 4.08221 * 1.46634 0.26236 0.00000 *
13020 //
13021 HMMER3/b [3.0 | March 2010]
13022 NAME 4_LSU_Alveolata_4_LSU_start_thirteen_long
13023 LENG 45
13024 ALPH DNA
13025 RF no
13026 CS no
13027 MAP yes
13028 DATE Thu Mar 1 14:42:05 2012
13029 NSEQ 24
13030 EFFN 3.893555
13031 CKSUM 191642901
13032 STATS LOCAL MSV -7.2444 0.71933
13033 STATS LOCAL VITERBI -7.7058 0.71933
13034 STATS LOCAL FORWARD -4.3034 0.71933
13035 HMM A C G T
13036 m->m m->i m->d i->m i->i d->m d->d
13037 COMPO 1.16586 1.50746 1.51087 1.40179
13038 1.38629 1.38629 1.38629 1.38629
13039 0.03337 4.10982 4.10982 1.46634 0.26236 0.00000 *
13040 1 1.46824 2.04571 2.31358 0.61346 1 - -
13041 1.38629 1.38629 1.38629 1.38629
13042 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13043 2 1.05286 2.20903 2.24595 0.83143 2 - -
13044 1.38629 1.38629 1.38629 1.38629
13045 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13046 3 2.32070 1.97985 2.68818 0.36284 3 - -
13047 1.38629 1.38629 1.38629 1.38629
13048 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13049 4 0.12173 3.54680 2.90925 3.46466 4 - -
13050 1.38629 1.38629 1.38629 1.38629
13051 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13052 5 3.06047 3.75390 0.10049 3.67641 5 - -
13053 1.38629 1.38629 1.38629 1.38629
13054 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13055 6 0.12173 3.54680 2.90925 3.46466 6 - -
13056 1.38629 1.38629 1.38629 1.38629
13057 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13058 7 3.62373 0.10960 3.66473 2.96588 7 - -
13059 1.38629 1.38629 1.38629 1.38629
13060 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13061 8 3.62373 0.10960 3.66473 2.96588 8 - -
13062 1.38629 1.38629 1.38629 1.38629
13063 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13064 9 3.26001 2.70388 3.30149 0.15334 9 - -
13065 1.38629 1.38629 1.38629 1.38629
13066 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13067 10 3.06047 3.75390 0.10049 3.67641 10 - -
13068 1.38629 1.38629 1.38629 1.38629
13069 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13070 11 0.12173 3.54680 2.90925 3.46466 11 - -
13071 1.38629 1.38629 1.38629 1.38629
13072 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13073 12 0.12173 3.54680 2.90925 3.46466 12 - -
13074 1.38629 1.38629 1.38629 1.38629
13075 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13076 13 0.12173 3.54680 2.90925 3.46466 13 - -
13077 1.38629 1.38629 1.38629 1.38629
13078 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13079 14 3.26001 2.70388 3.30149 0.15334 14 - -
13080 1.38629 1.38629 1.38629 1.38629
13081 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13082 15 3.62373 0.10960 3.66473 2.96588 15 - -
13083 1.38629 1.38629 1.38629 1.38629
13084 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13085 16 0.12173 3.54680 2.90925 3.46466 16 - -
13086 1.38629 1.38629 1.38629 1.38629
13087 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13088 17 3.06047 3.75390 0.10049 3.67641 17 - -
13089 1.38629 1.38629 1.38629 1.38629
13090 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13091 18 2.54857 2.39251 1.90817 0.38264 18 - -
13092 1.38629 1.38629 1.38629 1.38629
13093 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13094 19 3.62373 0.10960 3.66473 2.96588 19 - -
13095 1.38629 1.38629 1.38629 1.38629
13096 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13097 20 3.06047 3.75390 0.10049 3.67641 20 - -
13098 1.38629 1.38629 1.38629 1.38629
13099 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13100 21 0.12173 3.54680 2.90925 3.46466 21 - -
13101 1.38629 1.38629 1.38629 1.38629
13102 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13103 22 3.06047 3.75390 0.10049 3.67641 22 - -
13104 1.38629 1.38629 1.38629 1.38629
13105 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13106 23 2.39260 3.42516 0.17435 3.32257 23 - -
13107 1.38629 1.38629 1.38629 1.38629
13108 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13109 24 3.10643 2.32027 3.15457 0.20538 24 - -
13110 1.38629 1.38629 1.38629 1.38629
13111 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13112 25 3.26001 2.70388 3.30149 0.15334 25 - -
13113 1.38629 1.38629 1.38629 1.38629
13114 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13115 26 0.12173 3.54680 2.90925 3.46466 26 - -
13116 1.38629 1.38629 1.38629 1.38629
13117 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13118 27 3.62373 0.10960 3.66473 2.96588 27 - -
13119 1.38629 1.38629 1.38629 1.38629
13120 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13121 28 3.62373 0.10960 3.66473 2.96588 28 - -
13122 1.38629 1.38629 1.38629 1.38629
13123 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13124 29 3.62373 0.10960 3.66473 2.96588 29 - -
13125 1.38629 1.38629 1.38629 1.38629
13126 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13127 30 3.06047 3.75390 0.10049 3.67641 30 - -
13128 1.38629 1.38629 1.38629 1.38629
13129 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13130 31 3.62373 0.10960 3.66473 2.96588 31 - -
13131 1.38629 1.38629 1.38629 1.38629
13132 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13133 32 3.26001 2.70388 3.30149 0.15334 32 - -
13134 1.38629 1.38629 1.38629 1.38629
13135 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13136 33 3.06047 3.75390 0.10049 3.67641 33 - -
13137 1.38629 1.38629 1.38629 1.38629
13138 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13139 34 0.12173 3.54680 2.90925 3.46466 34 - -
13140 1.38629 1.38629 1.38629 1.38629
13141 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13142 35 0.12173 3.54680 2.90925 3.46466 35 - -
13143 1.38629 1.38629 1.38629 1.38629
13144 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13145 36 2.88119 1.85984 2.93863 0.30748 36 - -
13146 1.38629 1.38629 1.38629 1.38629
13147 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13148 37 3.26001 2.70388 3.30149 0.15334 37 - -
13149 1.38629 1.38629 1.38629 1.38629
13150 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13151 38 3.26001 2.70388 3.30149 0.15334 38 - -
13152 1.38629 1.38629 1.38629 1.38629
13153 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13154 39 0.12173 3.54680 2.90925 3.46466 39 - -
13155 1.38629 1.38629 1.38629 1.38629
13156 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13157 40 0.12173 3.54680 2.90925 3.46466 40 - -
13158 1.38629 1.38629 1.38629 1.38629
13159 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13160 41 3.06047 3.75390 0.10049 3.67641 41 - -
13161 1.38629 1.38629 1.38629 1.38629
13162 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13163 42 3.62373 0.10960 3.66473 2.96588 42 - -
13164 1.38629 1.38629 1.38629 1.38629
13165 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13166 43 0.12173 3.54680 2.90925 3.46466 43 - -
13167 1.38629 1.38629 1.38629 1.38629
13168 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13169 44 3.26001 2.70388 3.30149 0.15334 44 - -
13170 1.38629 1.38629 1.38629 1.38629
13171 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547
13172 45 0.12173 3.54680 2.90925 3.46466 45 - -
13173 1.38629 1.38629 1.38629 1.38629
13174 0.01683 4.09327 * 1.46634 0.26236 0.00000 *
13175 //
13176 HMMER3/b [3.0 | March 2010]
13177 NAME 4_LSU_Alveolata_4_LSU_start_two_long
13178 LENG 45
13179 ALPH DNA
13180 RF no
13181 CS no
13182 MAP yes
13183 DATE Thu Mar 1 14:39:59 2012
13184 NSEQ 8
13185 EFFN 3.683594
13186 CKSUM 435453820
13187 STATS LOCAL MSV -7.5820 0.71933
13188 STATS LOCAL VITERBI -7.6593 0.71933
13189 STATS LOCAL FORWARD -3.8838 0.71933
13190 HMM A C G T
13191 m->m m->i m->d i->m i->i d->m d->d
13192 COMPO 1.11795 1.68208 1.35544 1.47302
13193 1.38629 1.38629 1.38629 1.38629
13194 0.03458 4.07475 4.07475 1.46634 0.26236 0.00000 *
13195 1 3.02205 3.69704 0.10587 3.61333 1 - -
13196 1.38629 1.38629 1.38629 1.38629
13197 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13198 2 0.98857 1.72053 2.09224 1.12236 2 - -
13199 1.38629 1.38629 1.38629 1.38629
13200 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13201 3 3.02205 3.69704 0.10587 3.61333 3 - -
13202 1.38629 1.38629 1.38629 1.38629
13203 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13204 4 0.12832 3.48915 2.87223 3.40132 4 - -
13205 1.38629 1.38629 1.38629 1.38629
13206 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13207 5 3.02205 3.69704 0.10587 3.61333 5 - -
13208 1.38629 1.38629 1.38629 1.38629
13209 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13210 6 0.12832 3.48915 2.87223 3.40132 6 - -
13211 1.38629 1.38629 1.38629 1.38629
13212 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13213 7 3.55808 0.11624 3.60208 2.91913 7 - -
13214 1.38629 1.38629 1.38629 1.38629
13215 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13216 8 0.12832 3.48915 2.87223 3.40132 8 - -
13217 1.38629 1.38629 1.38629 1.38629
13218 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13219 9 3.19991 2.66577 3.24376 0.16173 9 - -
13220 1.38629 1.38629 1.38629 1.38629
13221 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13222 10 3.02205 3.69704 0.10587 3.61333 10 - -
13223 1.38629 1.38629 1.38629 1.38629
13224 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13225 11 0.12832 3.48915 2.87223 3.40132 11 - -
13226 1.38629 1.38629 1.38629 1.38629
13227 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13228 12 0.12832 3.48915 2.87223 3.40132 12 - -
13229 1.38629 1.38629 1.38629 1.38629
13230 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13231 13 3.02205 3.69704 0.10587 3.61333 13 - -
13232 1.38629 1.38629 1.38629 1.38629
13233 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13234 14 3.19991 2.66577 3.24376 0.16173 14 - -
13235 1.38629 1.38629 1.38629 1.38629
13236 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13237 15 3.19991 2.66577 3.24376 0.16173 15 - -
13238 1.38629 1.38629 1.38629 1.38629
13239 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13240 16 0.12832 3.48915 2.87223 3.40132 16 - -
13241 1.38629 1.38629 1.38629 1.38629
13242 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13243 17 3.02205 3.69704 0.10587 3.61333 17 - -
13244 1.38629 1.38629 1.38629 1.38629
13245 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13246 18 3.02205 3.69704 0.10587 3.61333 18 - -
13247 1.38629 1.38629 1.38629 1.38629
13248 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13249 19 3.55808 0.11624 3.60208 2.91913 19 - -
13250 1.38629 1.38629 1.38629 1.38629
13251 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13252 20 3.19991 2.66577 3.24376 0.16173 20 - -
13253 1.38629 1.38629 1.38629 1.38629
13254 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13255 21 0.49923 1.63631 2.32597 2.29642 21 - -
13256 1.38629 1.38629 1.38629 1.38629
13257 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13258 22 3.02205 3.69704 0.10587 3.61333 22 - -
13259 1.38629 1.38629 1.38629 1.38629
13260 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13261 23 3.55808 0.11624 3.60208 2.91913 23 - -
13262 1.38629 1.38629 1.38629 1.38629
13263 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13264 24 0.12832 3.48915 2.87223 3.40132 24 - -
13265 1.38629 1.38629 1.38629 1.38629
13266 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13267 25 0.60696 1.83062 2.18714 1.70132 25 - -
13268 1.38629 1.38629 1.38629 1.38629
13269 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13270 26 0.12832 3.48915 2.87223 3.40132 26 - -
13271 1.38629 1.38629 1.38629 1.38629
13272 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13273 27 3.55808 0.11624 3.60208 2.91913 27 - -
13274 1.38629 1.38629 1.38629 1.38629
13275 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13276 28 3.55808 0.11624 3.60208 2.91913 28 - -
13277 1.38629 1.38629 1.38629 1.38629
13278 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13279 29 3.19991 2.66577 3.24376 0.16173 29 - -
13280 1.38629 1.38629 1.38629 1.38629
13281 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13282 30 3.02205 3.69704 0.10587 3.61333 30 - -
13283 1.38629 1.38629 1.38629 1.38629
13284 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13285 31 3.55808 0.11624 3.60208 2.91913 31 - -
13286 1.38629 1.38629 1.38629 1.38629
13287 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13288 32 3.19991 2.66577 3.24376 0.16173 32 - -
13289 1.38629 1.38629 1.38629 1.38629
13290 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13291 33 3.02205 3.69704 0.10587 3.61333 33 - -
13292 1.38629 1.38629 1.38629 1.38629
13293 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13294 34 0.12832 3.48915 2.87223 3.40132 34 - -
13295 1.38629 1.38629 1.38629 1.38629
13296 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13297 35 0.12832 3.48915 2.87223 3.40132 35 - -
13298 1.38629 1.38629 1.38629 1.38629
13299 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13300 36 3.19991 2.66577 3.24376 0.16173 36 - -
13301 1.38629 1.38629 1.38629 1.38629
13302 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13303 37 3.19991 2.66577 3.24376 0.16173 37 - -
13304 1.38629 1.38629 1.38629 1.38629
13305 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13306 38 3.19991 2.66577 3.24376 0.16173 38 - -
13307 1.38629 1.38629 1.38629 1.38629
13308 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13309 39 0.12832 3.48915 2.87223 3.40132 39 - -
13310 1.38629 1.38629 1.38629 1.38629
13311 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13312 40 0.12832 3.48915 2.87223 3.40132 40 - -
13313 1.38629 1.38629 1.38629 1.38629
13314 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13315 41 3.02205 3.69704 0.10587 3.61333 41 - -
13316 1.38629 1.38629 1.38629 1.38629
13317 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13318 42 3.55808 0.11624 3.60208 2.91913 42 - -
13319 1.38629 1.38629 1.38629 1.38629
13320 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13321 43 0.12832 3.48915 2.87223 3.40132 43 - -
13322 1.38629 1.38629 1.38629 1.38629
13323 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13324 44 3.19991 2.66577 3.24376 0.16173 44 - -
13325 1.38629 1.38629 1.38629 1.38629
13326 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547
13327 45 0.12832 3.48915 2.87223 3.40132 45 - -
13328 1.38629 1.38629 1.38629 1.38629
13329 0.01744 4.05761 * 1.46634 0.26236 0.00000 *
13330 //
13331 HMMER3/b [3.0 | March 2010]
13332 NAME 1_SSU_Alveolata_1_SSU_end_one_long
13333 LENG 45
13334 ALPH DNA
13335 RF no
13336 CS no
13337 MAP yes
13338 DATE Sat Jan 28 01:43:03 2012
13339 NSEQ 69
13340 EFFN 3.642883
13341 CKSUM 3148699463
13342 STATS LOCAL MSV -7.4489 0.71932
13343 STATS LOCAL VITERBI -7.6281 0.71932
13344 STATS LOCAL FORWARD -4.1382 0.71932
13345 HMM A C G T
13346 m->m m->i m->d i->m i->i d->m d->d
13347 COMPO 1.33776 1.55982 1.24507 1.42932
13348 1.38629 1.38629 1.38629 1.38629
13349 0.03483 4.06781 4.06781 1.46634 0.26236 0.00000 *
13350 1 0.12970 3.47751 2.86475 3.38854 1 - -
13351 1.38629 1.38629 1.38629 1.38629
13352 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13353 2 2.93148 3.51149 0.13230 3.20034 2 - -
13354 1.38629 1.38629 1.38629 1.38629
13355 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13356 3 3.18787 2.65814 3.23219 0.16347 3 - -
13357 1.38629 1.38629 1.38629 1.38629
13358 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13359 4 3.54478 0.11764 3.58937 2.90961 4 - -
13360 1.38629 1.38629 1.38629 1.38629
13361 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13362 5 3.01421 3.68548 0.10701 3.60051 5 - -
13363 1.38629 1.38629 1.38629 1.38629
13364 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13365 6 3.18787 2.65814 3.23219 0.16347 6 - -
13366 1.38629 1.38629 1.38629 1.38629
13367 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13368 7 0.12970 3.47751 2.86475 3.38854 7 - -
13369 1.38629 1.38629 1.38629 1.38629
13370 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13371 8 0.12970 3.47751 2.86475 3.38854 8 - -
13372 1.38629 1.38629 1.38629 1.38629
13373 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13374 9 3.54478 0.11764 3.58937 2.90961 9 - -
13375 1.38629 1.38629 1.38629 1.38629
13376 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13377 10 0.12970 3.47751 2.86475 3.38854 10 - -
13378 1.38629 1.38629 1.38629 1.38629
13379 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13380 11 0.36931 1.96424 2.44668 2.50172 11 - -
13381 1.38629 1.38629 1.38629 1.38629
13382 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13383 12 2.93148 3.51149 0.13230 3.20034 12 - -
13384 1.38629 1.38629 1.38629 1.38629
13385 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13386 13 3.01421 3.68548 0.10701 3.60051 13 - -
13387 1.38629 1.38629 1.38629 1.38629
13388 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13389 14 3.18787 2.65814 3.23219 0.16347 14 - -
13390 1.38629 1.38629 1.38629 1.38629
13391 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13392 15 2.33627 2.48307 2.82552 0.27372 15 - -
13393 1.38629 1.38629 1.38629 1.38629
13394 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13395 16 3.18787 2.65814 3.23219 0.16347 16 - -
13396 1.38629 1.38629 1.38629 1.38629
13397 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13398 17 3.54478 0.11764 3.58937 2.90961 17 - -
13399 1.38629 1.38629 1.38629 1.38629
13400 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13401 18 3.19125 0.20146 3.24795 2.27802 18 - -
13402 1.38629 1.38629 1.38629 1.38629
13403 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13404 19 3.01421 3.68548 0.10701 3.60051 19 - -
13405 1.38629 1.38629 1.38629 1.38629
13406 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13407 20 3.18787 2.65814 3.23219 0.16347 20 - -
13408 1.38629 1.38629 1.38629 1.38629
13409 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13410 21 0.12970 3.47751 2.86475 3.38854 21 - -
13411 1.38629 1.38629 1.38629 1.38629
13412 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13413 22 3.01421 3.68548 0.10701 3.60051 22 - -
13414 1.38629 1.38629 1.38629 1.38629
13415 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13416 23 3.01421 3.68548 0.10701 3.60051 23 - -
13417 1.38629 1.38629 1.38629 1.38629
13418 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13419 24 3.18787 2.65814 3.23219 0.16347 24 - -
13420 1.38629 1.38629 1.38629 1.38629
13421 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13422 25 3.01421 3.68548 0.10701 3.60051 25 - -
13423 1.38629 1.38629 1.38629 1.38629
13424 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13425 26 0.12970 3.47751 2.86475 3.38854 26 - -
13426 1.38629 1.38629 1.38629 1.38629
13427 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13428 27 0.12970 3.47751 2.86475 3.38854 27 - -
13429 1.38629 1.38629 1.38629 1.38629
13430 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13431 28 3.54478 0.11764 3.58937 2.90961 28 - -
13432 1.38629 1.38629 1.38629 1.38629
13433 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13434 29 3.54478 0.11764 3.58937 2.90961 29 - -
13435 1.38629 1.38629 1.38629 1.38629
13436 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13437 30 3.18787 2.65814 3.23219 0.16347 30 - -
13438 1.38629 1.38629 1.38629 1.38629
13439 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13440 31 3.01421 3.68548 0.10701 3.60051 31 - -
13441 1.38629 1.38629 1.38629 1.38629
13442 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13443 32 3.54478 0.11764 3.58937 2.90961 32 - -
13444 1.38629 1.38629 1.38629 1.38629
13445 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13446 33 2.50860 3.43763 0.16147 3.33578 33 - -
13447 1.38629 1.38629 1.38629 1.38629
13448 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13449 34 3.01421 3.68548 0.10701 3.60051 34 - -
13450 1.38629 1.38629 1.38629 1.38629
13451 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13452 35 0.12970 3.47751 2.86475 3.38854 35 - -
13453 1.38629 1.38629 1.38629 1.38629
13454 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13455 36 0.23093 3.00620 2.64834 2.45388 36 - -
13456 1.38629 1.38629 1.38629 1.38629
13457 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13458 37 3.01421 3.68548 0.10701 3.60051 37 - -
13459 1.38629 1.38629 1.38629 1.38629
13460 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13461 38 3.01421 3.68548 0.10701 3.60051 38 - -
13462 1.38629 1.38629 1.38629 1.38629
13463 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13464 39 0.12970 3.47751 2.86475 3.38854 39 - -
13465 1.38629 1.38629 1.38629 1.38629
13466 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13467 40 3.18787 2.65814 3.23219 0.16347 40 - -
13468 1.38629 1.38629 1.38629 1.38629
13469 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13470 41 3.54478 0.11764 3.58937 2.90961 41 - -
13471 1.38629 1.38629 1.38629 1.38629
13472 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13473 42 0.12970 3.47751 2.86475 3.38854 42 - -
13474 1.38629 1.38629 1.38629 1.38629
13475 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13476 43 2.81519 2.59339 3.07078 0.19973 43 - -
13477 1.38629 1.38629 1.38629 1.38629
13478 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13479 44 3.18787 2.65814 3.23219 0.16347 44 - -
13480 1.38629 1.38629 1.38629 1.38629
13481 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547
13482 45 2.10397 0.41821 2.56367 1.94643 45 - -
13483 1.38629 1.38629 1.38629 1.38629
13484 0.01757 4.05055 * 1.46634 0.26236 0.00000 *
13485 //
13486 HMMER3/b [3.0 | March 2010]
13487 NAME 1_SSU_Alveolata_1_SSU_end_two_long
13488 LENG 45
13489 ALPH DNA
13490 RF no
13491 CS no
13492 MAP yes
13493 DATE Sat Jan 28 01:43:11 2012
13494 NSEQ 7
13495 EFFN 3.373535
13496 CKSUM 347251863
13497 STATS LOCAL MSV -7.4282 0.71933
13498 STATS LOCAL VITERBI -7.6473 0.71933
13499 STATS LOCAL FORWARD -4.1966 0.71933
13500 HMM A C G T
13501 m->m m->i m->d i->m i->i d->m d->d
13502 COMPO 1.33048 1.59392 1.30706 1.33977
13503 1.38629 1.38629 1.38629 1.38629
13504 0.03654 4.02061 4.02061 1.46634 0.26236 0.00000 *
13505 1 0.13978 3.39641 2.81240 3.29960 1 - -
13506 1.38629 1.38629 1.38629 1.38629
13507 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13508 2 2.95876 3.60411 0.11539 3.51048 2 - -
13509 1.38629 1.38629 1.38629 1.38629
13510 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13511 3 3.10493 2.60552 3.15246 0.17607 3 - -
13512 1.38629 1.38629 1.38629 1.38629
13513 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13514 4 3.45170 0.12801 3.50037 2.84251 4 - -
13515 1.38629 1.38629 1.38629 1.38629
13516 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13517 5 2.95876 3.60411 0.11539 3.51048 5 - -
13518 1.38629 1.38629 1.38629 1.38629
13519 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13520 6 3.10493 2.60552 3.15246 0.17607 6 - -
13521 1.38629 1.38629 1.38629 1.38629
13522 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13523 7 0.13978 3.39641 2.81240 3.29960 7 - -
13524 1.38629 1.38629 1.38629 1.38629
13525 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13526 8 0.13978 3.39641 2.81240 3.29960 8 - -
13527 1.38629 1.38629 1.38629 1.38629
13528 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13529 9 3.45170 0.12801 3.50037 2.84251 9 - -
13530 1.38629 1.38629 1.38629 1.38629
13531 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13532 10 0.13978 3.39641 2.81240 3.29960 10 - -
13533 1.38629 1.38629 1.38629 1.38629
13534 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13535 11 2.43739 1.12083 2.50826 0.68281 11 - -
13536 1.38629 1.38629 1.38629 1.38629
13537 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13538 12 2.95876 3.60411 0.11539 3.51048 12 - -
13539 1.38629 1.38629 1.38629 1.38629
13540 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13541 13 2.95876 3.60411 0.11539 3.51048 13 - -
13542 1.38629 1.38629 1.38629 1.38629
13543 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13544 14 3.10493 2.60552 3.15246 0.17607 14 - -
13545 1.38629 1.38629 1.38629 1.38629
13546 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13547 15 0.13978 3.39641 2.81240 3.29960 15 - -
13548 1.38629 1.38629 1.38629 1.38629
13549 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13550 16 3.10493 2.60552 3.15246 0.17607 16 - -
13551 1.38629 1.38629 1.38629 1.38629
13552 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13553 17 3.45170 0.12801 3.50037 2.84251 17 - -
13554 1.38629 1.38629 1.38629 1.38629
13555 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13556 18 3.10493 2.60552 3.15246 0.17607 18 - -
13557 1.38629 1.38629 1.38629 1.38629
13558 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13559 19 2.95876 3.60411 0.11539 3.51048 19 - -
13560 1.38629 1.38629 1.38629 1.38629
13561 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13562 20 3.10493 2.60552 3.15246 0.17607 20 - -
13563 1.38629 1.38629 1.38629 1.38629
13564 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13565 21 0.13978 3.39641 2.81240 3.29960 21 - -
13566 1.38629 1.38629 1.38629 1.38629
13567 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13568 22 2.95876 3.60411 0.11539 3.51048 22 - -
13569 1.38629 1.38629 1.38629 1.38629
13570 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13571 23 2.95876 3.60411 0.11539 3.51048 23 - -
13572 1.38629 1.38629 1.38629 1.38629
13573 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13574 24 3.10493 2.60552 3.15246 0.17607 24 - -
13575 1.38629 1.38629 1.38629 1.38629
13576 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13577 25 2.95876 3.60411 0.11539 3.51048 25 - -
13578 1.38629 1.38629 1.38629 1.38629
13579 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13580 26 0.13978 3.39641 2.81240 3.29960 26 - -
13581 1.38629 1.38629 1.38629 1.38629
13582 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13583 27 0.13978 3.39641 2.81240 3.29960 27 - -
13584 1.38629 1.38629 1.38629 1.38629
13585 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13586 28 3.45170 0.12801 3.50037 2.84251 28 - -
13587 1.38629 1.38629 1.38629 1.38629
13588 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13589 29 3.45170 0.12801 3.50037 2.84251 29 - -
13590 1.38629 1.38629 1.38629 1.38629
13591 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13592 30 3.10493 2.60552 3.15246 0.17607 30 - -
13593 1.38629 1.38629 1.38629 1.38629
13594 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13595 31 2.95876 3.60411 0.11539 3.51048 31 - -
13596 1.38629 1.38629 1.38629 1.38629
13597 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13598 32 3.45170 0.12801 3.50037 2.84251 32 - -
13599 1.38629 1.38629 1.38629 1.38629
13600 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13601 33 0.13978 3.39641 2.81240 3.29960 33 - -
13602 1.38629 1.38629 1.38629 1.38629
13603 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13604 34 2.95876 3.60411 0.11539 3.51048 34 - -
13605 1.38629 1.38629 1.38629 1.38629
13606 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13607 35 0.13978 3.39641 2.81240 3.29960 35 - -
13608 1.38629 1.38629 1.38629 1.38629
13609 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13610 36 3.10493 2.60552 3.15246 0.17607 36 - -
13611 1.38629 1.38629 1.38629 1.38629
13612 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13613 37 2.95876 3.60411 0.11539 3.51048 37 - -
13614 1.38629 1.38629 1.38629 1.38629
13615 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13616 38 2.95876 3.60411 0.11539 3.51048 38 - -
13617 1.38629 1.38629 1.38629 1.38629
13618 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13619 39 0.13978 3.39641 2.81240 3.29960 39 - -
13620 1.38629 1.38629 1.38629 1.38629
13621 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13622 40 3.10493 2.60552 3.15246 0.17607 40 - -
13623 1.38629 1.38629 1.38629 1.38629
13624 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13625 41 3.45170 0.12801 3.50037 2.84251 41 - -
13626 1.38629 1.38629 1.38629 1.38629
13627 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13628 42 0.13978 3.39641 2.81240 3.29960 42 - -
13629 1.38629 1.38629 1.38629 1.38629
13630 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13631 43 3.10493 2.60552 3.15246 0.17607 43 - -
13632 1.38629 1.38629 1.38629 1.38629
13633 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13634 44 3.10493 2.60552 3.15246 0.17607 44 - -
13635 1.38629 1.38629 1.38629 1.38629
13636 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547
13637 45 3.45170 0.12801 3.50037 2.84251 45 - -
13638 1.38629 1.38629 1.38629 1.38629
13639 0.01844 4.00251 * 1.46634 0.26236 0.00000 *
13640 //