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comparison ITSx_db/HMMs/E.hmm @ 0:f82c70f54bd7 draft

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author okorol
date Tue, 24 Mar 2015 12:02:48 -0400
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-1:000000000000 0:f82c70f54bd7
1 HMMER3/b [3.0 | March 2010]
2 NAME 3_End_Euglenozoa_58S_end_five_long
3 LENG 45
4 ALPH DNA
5 RF no
6 CS no
7 MAP yes
8 DATE Fri Jan 20 21:20:25 2012
9 NSEQ 5
10 EFFN 3.305664
11 CKSUM 1011588078
12 STATS LOCAL MSV -8.1772 0.71930
13 STATS LOCAL VITERBI -7.8656 0.71930
14 STATS LOCAL FORWARD -3.6513 0.71930
15 HMM A C G T
16 m->m m->i m->d i->m i->i d->m d->d
17 COMPO 1.83104 0.97779 1.32465 1.62094
18 1.38629 1.38629 1.38629 1.38629
19 0.03700 4.00836 4.00836 1.46634 0.26236 0.00000 *
20 1 3.42681 0.13096 3.47654 2.82441 1 - -
21 1.38629 1.38629 1.38629 1.38629
22 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
23 2 3.42681 0.13096 3.47654 2.82441 2 - -
24 1.38629 1.38629 1.38629 1.38629
25 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
26 3 3.42681 0.13096 3.47654 2.82441 3 - -
27 1.38629 1.38629 1.38629 1.38629
28 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
29 4 3.42681 0.13096 3.47654 2.82441 4 - -
30 1.38629 1.38629 1.38629 1.38629
31 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
32 5 2.43822 1.17704 2.50879 0.64793 5 - -
33 1.38629 1.38629 1.38629 1.38629
34 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
35 6 3.42681 0.13096 3.47654 2.82441 6 - -
36 1.38629 1.38629 1.38629 1.38629
37 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
38 7 2.94371 3.58221 0.11777 3.48630 7 - -
39 1.38629 1.38629 1.38629 1.38629
40 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
41 8 2.94371 3.58221 0.11777 3.48630 8 - -
42 1.38629 1.38629 1.38629 1.38629
43 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
44 9 2.94371 3.58221 0.11777 3.48630 9 - -
45 1.38629 1.38629 1.38629 1.38629
46 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
47 10 2.94371 3.58221 0.11777 3.48630 10 - -
48 1.38629 1.38629 1.38629 1.38629
49 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
50 11 2.66304 1.70497 2.72642 0.38121 11 - -
51 1.38629 1.38629 1.38629 1.38629
52 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
53 12 3.42681 0.13096 3.47654 2.82441 12 - -
54 1.38629 1.38629 1.38629 1.38629
55 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
56 13 0.14262 3.37480 2.79837 3.27595 13 - -
57 1.38629 1.38629 1.38629 1.38629
58 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
59 14 3.08310 2.59163 3.13146 0.17957 14 - -
60 1.38629 1.38629 1.38629 1.38629
61 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
62 15 3.42681 0.13096 3.47654 2.82441 15 - -
63 1.38629 1.38629 1.38629 1.38629
64 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
65 16 3.42681 0.13096 3.47654 2.82441 16 - -
66 1.38629 1.38629 1.38629 1.38629
67 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
68 17 3.42681 0.13096 3.47654 2.82441 17 - -
69 1.38629 1.38629 1.38629 1.38629
70 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
71 18 3.42681 0.13096 3.47654 2.82441 18 - -
72 1.38629 1.38629 1.38629 1.38629
73 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
74 19 2.94371 3.58221 0.11777 3.48630 19 - -
75 1.38629 1.38629 1.38629 1.38629
76 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
77 20 3.08310 2.59163 3.13146 0.17957 20 - -
78 1.38629 1.38629 1.38629 1.38629
79 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
80 21 2.94371 3.58221 0.11777 3.48630 21 - -
81 1.38629 1.38629 1.38629 1.38629
82 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
83 22 3.42681 0.13096 3.47654 2.82441 22 - -
84 1.38629 1.38629 1.38629 1.38629
85 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
86 23 0.14262 3.37480 2.79837 3.27595 23 - -
87 1.38629 1.38629 1.38629 1.38629
88 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
89 24 3.08310 2.59163 3.13146 0.17957 24 - -
90 1.38629 1.38629 1.38629 1.38629
91 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
92 25 2.94371 3.58221 0.11777 3.48630 25 - -
93 1.38629 1.38629 1.38629 1.38629
94 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
95 26 3.42681 0.13096 3.47654 2.82441 26 - -
96 1.38629 1.38629 1.38629 1.38629
97 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
98 27 3.42681 0.13096 3.47654 2.82441 27 - -
99 1.38629 1.38629 1.38629 1.38629
100 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
101 28 2.94371 3.58221 0.11777 3.48630 28 - -
102 1.38629 1.38629 1.38629 1.38629
103 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
104 29 3.42681 0.13096 3.47654 2.82441 29 - -
105 1.38629 1.38629 1.38629 1.38629
106 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
107 30 0.14262 3.37480 2.79837 3.27595 30 - -
108 1.38629 1.38629 1.38629 1.38629
109 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
110 31 2.94371 3.58221 0.11777 3.48630 31 - -
111 1.38629 1.38629 1.38629 1.38629
112 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
113 32 3.08310 2.59163 3.13146 0.17957 32 - -
114 1.38629 1.38629 1.38629 1.38629
115 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
116 33 3.42681 0.13096 3.47654 2.82441 33 - -
117 1.38629 1.38629 1.38629 1.38629
118 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
119 34 3.08310 2.59163 3.13146 0.17957 34 - -
120 1.38629 1.38629 1.38629 1.38629
121 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
122 35 3.42681 0.13096 3.47654 2.82441 35 - -
123 1.38629 1.38629 1.38629 1.38629
124 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
125 36 0.14262 3.37480 2.79837 3.27595 36 - -
126 1.38629 1.38629 1.38629 1.38629
127 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
128 37 2.94371 3.58221 0.11777 3.48630 37 - -
129 1.38629 1.38629 1.38629 1.38629
130 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
131 38 3.08310 2.59163 3.13146 0.17957 38 - -
132 1.38629 1.38629 1.38629 1.38629
133 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
134 39 2.94371 3.58221 0.11777 3.48630 39 - -
135 1.38629 1.38629 1.38629 1.38629
136 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
137 40 3.08310 2.59163 3.13146 0.17957 40 - -
138 1.38629 1.38629 1.38629 1.38629
139 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
140 41 3.42681 0.13096 3.47654 2.82441 41 - -
141 1.38629 1.38629 1.38629 1.38629
142 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
143 42 2.94371 3.58221 0.11777 3.48630 42 - -
144 1.38629 1.38629 1.38629 1.38629
145 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
146 43 0.14262 3.37480 2.79837 3.27595 43 - -
147 1.38629 1.38629 1.38629 1.38629
148 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
149 44 0.14262 3.37480 2.79837 3.27595 44 - -
150 1.38629 1.38629 1.38629 1.38629
151 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547
152 45 3.42681 0.13096 3.47654 2.82441 45 - -
153 1.38629 1.38629 1.38629 1.38629
154 0.01867 3.99003 * 1.46634 0.26236 0.00000 *
155 //
156 HMMER3/b [3.0 | March 2010]
157 NAME 3_End_Euglenozoa_58S_end_four_long
158 LENG 45
159 ALPH DNA
160 RF no
161 CS no
162 MAP yes
163 DATE Fri Jan 20 21:20:17 2012
164 NSEQ 9
165 EFFN 3.388184
166 CKSUM 4129927598
167 STATS LOCAL MSV -7.5680 0.71933
168 STATS LOCAL VITERBI -7.9086 0.71933
169 STATS LOCAL FORWARD -4.1297 0.71933
170 HMM A C G T
171 m->m m->i m->d i->m i->i d->m d->d
172 COMPO 1.73272 1.05373 1.47466 1.40362
173 1.38629 1.38629 1.38629 1.38629
174 0.03645 4.02324 4.02324 1.46634 0.26236 0.00000 *
175 1 3.45700 0.12739 3.50544 2.84636 1 - -
176 1.38629 1.38629 1.38629 1.38629
177 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
178 2 3.45700 0.12739 3.50544 2.84636 2 - -
179 1.38629 1.38629 1.38629 1.38629
180 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
181 3 3.10960 2.60848 3.15695 0.17533 3 - -
182 1.38629 1.38629 1.38629 1.38629
183 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
184 4 3.10960 2.60848 3.15695 0.17533 4 - -
185 1.38629 1.38629 1.38629 1.38629
186 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
187 5 2.51380 0.59068 2.58551 1.23879 5 - -
188 1.38629 1.38629 1.38629 1.38629
189 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
190 6 3.10960 2.60848 3.15695 0.17533 6 - -
191 1.38629 1.38629 1.38629 1.38629
192 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
193 7 2.58534 2.38556 0.26060 2.78052 7 - -
194 1.38629 1.38629 1.38629 1.38629
195 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
196 8 2.96194 3.60876 0.11489 3.51562 8 - -
197 1.38629 1.38629 1.38629 1.38629
198 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
199 9 2.96194 3.60876 0.11489 3.51562 9 - -
200 1.38629 1.38629 1.38629 1.38629
201 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
202 10 2.96194 3.60876 0.11489 3.51562 10 - -
203 1.38629 1.38629 1.38629 1.38629
204 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
205 11 3.10960 2.60848 3.15695 0.17533 11 - -
206 1.38629 1.38629 1.38629 1.38629
207 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
208 12 3.45700 0.12739 3.50544 2.84636 12 - -
209 1.38629 1.38629 1.38629 1.38629
210 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
211 13 0.13919 3.40101 2.81538 3.30464 13 - -
212 1.38629 1.38629 1.38629 1.38629
213 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
214 14 3.10960 2.60848 3.15695 0.17533 14 - -
215 1.38629 1.38629 1.38629 1.38629
216 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
217 15 3.45700 0.12739 3.50544 2.84636 15 - -
218 1.38629 1.38629 1.38629 1.38629
219 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
220 16 3.45700 0.12739 3.50544 2.84636 16 - -
221 1.38629 1.38629 1.38629 1.38629
222 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
223 17 3.45700 0.12739 3.50544 2.84636 17 - -
224 1.38629 1.38629 1.38629 1.38629
225 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
226 18 3.45700 0.12739 3.50544 2.84636 18 - -
227 1.38629 1.38629 1.38629 1.38629
228 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
229 19 2.96194 3.60876 0.11489 3.51562 19 - -
230 1.38629 1.38629 1.38629 1.38629
231 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
232 20 3.10960 2.60848 3.15695 0.17533 20 - -
233 1.38629 1.38629 1.38629 1.38629
234 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
235 21 2.96194 3.60876 0.11489 3.51562 21 - -
236 1.38629 1.38629 1.38629 1.38629
237 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
238 22 3.45700 0.12739 3.50544 2.84636 22 - -
239 1.38629 1.38629 1.38629 1.38629
240 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
241 23 0.13919 3.40101 2.81538 3.30464 23 - -
242 1.38629 1.38629 1.38629 1.38629
243 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
244 24 3.10960 2.60848 3.15695 0.17533 24 - -
245 1.38629 1.38629 1.38629 1.38629
246 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
247 25 2.96194 3.60876 0.11489 3.51562 25 - -
248 1.38629 1.38629 1.38629 1.38629
249 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
250 26 3.45700 0.12739 3.50544 2.84636 26 - -
251 1.38629 1.38629 1.38629 1.38629
252 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
253 27 3.45700 0.12739 3.50544 2.84636 27 - -
254 1.38629 1.38629 1.38629 1.38629
255 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
256 28 0.13919 3.40101 2.81538 3.30464 28 - -
257 1.38629 1.38629 1.38629 1.38629
258 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
259 29 3.45700 0.12739 3.50544 2.84636 29 - -
260 1.38629 1.38629 1.38629 1.38629
261 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
262 30 0.13919 3.40101 2.81538 3.30464 30 - -
263 1.38629 1.38629 1.38629 1.38629
264 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
265 31 3.10960 2.60848 3.15695 0.17533 31 - -
266 1.38629 1.38629 1.38629 1.38629
267 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
268 32 3.45700 0.12739 3.50544 2.84636 32 - -
269 1.38629 1.38629 1.38629 1.38629
270 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
271 33 3.45700 0.12739 3.50544 2.84636 33 - -
272 1.38629 1.38629 1.38629 1.38629
273 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
274 34 3.10960 2.60848 3.15695 0.17533 34 - -
275 1.38629 1.38629 1.38629 1.38629
276 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
277 35 3.45700 0.12739 3.50544 2.84636 35 - -
278 1.38629 1.38629 1.38629 1.38629
279 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
280 36 0.13919 3.40101 2.81538 3.30464 36 - -
281 1.38629 1.38629 1.38629 1.38629
282 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
283 37 2.96194 3.60876 0.11489 3.51562 37 - -
284 1.38629 1.38629 1.38629 1.38629
285 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
286 38 3.10960 2.60848 3.15695 0.17533 38 - -
287 1.38629 1.38629 1.38629 1.38629
288 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
289 39 2.96194 3.60876 0.11489 3.51562 39 - -
290 1.38629 1.38629 1.38629 1.38629
291 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
292 40 3.10960 2.60848 3.15695 0.17533 40 - -
293 1.38629 1.38629 1.38629 1.38629
294 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
295 41 3.45700 0.12739 3.50544 2.84636 41 - -
296 1.38629 1.38629 1.38629 1.38629
297 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
298 42 2.96194 3.60876 0.11489 3.51562 42 - -
299 1.38629 1.38629 1.38629 1.38629
300 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
301 43 0.13919 3.40101 2.81538 3.30464 43 - -
302 1.38629 1.38629 1.38629 1.38629
303 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
304 44 0.13919 3.40101 2.81538 3.30464 44 - -
305 1.38629 1.38629 1.38629 1.38629
306 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547
307 45 3.45700 0.12739 3.50544 2.84636 45 - -
308 1.38629 1.38629 1.38629 1.38629
309 0.01839 4.00518 * 1.46634 0.26236 0.00000 *
310 //
311 HMMER3/b [3.0 | March 2010]
312 NAME 3_End_Euglenozoa_58S_end_one_long
313 LENG 45
314 ALPH DNA
315 RF no
316 CS no
317 MAP yes
318 DATE Fri Jan 20 21:19:53 2012
319 NSEQ 2
320 EFFN 2.000000
321 CKSUM 4096091460
322 STATS LOCAL MSV -7.5109 0.72875
323 STATS LOCAL VITERBI -8.2829 0.72875
324 STATS LOCAL FORWARD -3.4193 0.72875
325 HMM A C G T
326 m->m m->i m->d i->m i->i d->m d->d
327 COMPO 1.64469 1.08655 1.50951 1.39220
328 1.38629 1.38629 1.38629 1.38629
329 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
330 1 2.81865 0.23582 2.88868 2.35662 1 - -
331 1.38629 1.38629 1.38629 1.38629
332 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
333 2 2.81865 0.23582 2.88868 2.35662 2 - -
334 1.38629 1.38629 1.38629 1.38629
335 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
336 3 2.81865 0.23582 2.88868 2.35662 3 - -
337 1.38629 1.38629 1.38629 1.38629
338 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
339 4 2.57915 2.25909 2.64442 0.28946 4 - -
340 1.38629 1.38629 1.38629 1.38629
341 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
342 5 2.57915 2.25909 2.64442 0.28946 5 - -
343 1.38629 1.38629 1.38629 1.38629
344 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
345 6 1.03732 1.95876 1.96551 1.00928 6 - -
346 1.38629 1.38629 1.38629 1.38629
347 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
348 7 2.81865 0.23582 2.88868 2.35662 7 - -
349 1.38629 1.38629 1.38629 1.38629
350 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
351 8 2.53331 3.02441 0.20344 2.88069 8 - -
352 1.38629 1.38629 1.38629 1.38629
353 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
354 9 2.53331 3.02441 0.20344 2.88069 9 - -
355 1.38629 1.38629 1.38629 1.38629
356 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
357 10 2.53331 3.02441 0.20344 2.88069 10 - -
358 1.38629 1.38629 1.38629 1.38629
359 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
360 11 2.81865 0.23582 2.88868 2.35662 11 - -
361 1.38629 1.38629 1.38629 1.38629
362 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
363 12 2.81865 0.23582 2.88868 2.35662 12 - -
364 1.38629 1.38629 1.38629 1.38629
365 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
366 13 0.23862 2.84929 2.43386 2.70756 13 - -
367 1.38629 1.38629 1.38629 1.38629
368 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
369 14 2.57915 2.25909 2.64442 0.28946 14 - -
370 1.38629 1.38629 1.38629 1.38629
371 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
372 15 2.81865 0.23582 2.88868 2.35662 15 - -
373 1.38629 1.38629 1.38629 1.38629
374 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
375 16 2.81865 0.23582 2.88868 2.35662 16 - -
376 1.38629 1.38629 1.38629 1.38629
377 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
378 17 2.81865 0.23582 2.88868 2.35662 17 - -
379 1.38629 1.38629 1.38629 1.38629
380 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
381 18 2.81865 0.23582 2.88868 2.35662 18 - -
382 1.38629 1.38629 1.38629 1.38629
383 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
384 19 2.53331 3.02441 0.20344 2.88069 19 - -
385 1.38629 1.38629 1.38629 1.38629
386 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
387 20 2.57915 2.25909 2.64442 0.28946 20 - -
388 1.38629 1.38629 1.38629 1.38629
389 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
390 21 2.53331 3.02441 0.20344 2.88069 21 - -
391 1.38629 1.38629 1.38629 1.38629
392 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
393 22 2.81865 0.23582 2.88868 2.35662 22 - -
394 1.38629 1.38629 1.38629 1.38629
395 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
396 23 0.23862 2.84929 2.43386 2.70756 23 - -
397 1.38629 1.38629 1.38629 1.38629
398 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
399 24 2.57915 2.25909 2.64442 0.28946 24 - -
400 1.38629 1.38629 1.38629 1.38629
401 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
402 25 2.53331 3.02441 0.20344 2.88069 25 - -
403 1.38629 1.38629 1.38629 1.38629
404 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
405 26 2.81865 0.23582 2.88868 2.35662 26 - -
406 1.38629 1.38629 1.38629 1.38629
407 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
408 27 2.81865 0.23582 2.88868 2.35662 27 - -
409 1.38629 1.38629 1.38629 1.38629
410 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
411 28 0.23862 2.84929 2.43386 2.70756 28 - -
412 1.38629 1.38629 1.38629 1.38629
413 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
414 29 2.57915 2.25909 2.64442 0.28946 29 - -
415 1.38629 1.38629 1.38629 1.38629
416 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
417 30 0.23862 2.84929 2.43386 2.70756 30 - -
418 1.38629 1.38629 1.38629 1.38629
419 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
420 31 2.57915 2.25909 2.64442 0.28946 31 - -
421 1.38629 1.38629 1.38629 1.38629
422 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
423 32 2.57915 2.25909 2.64442 0.28946 32 - -
424 1.38629 1.38629 1.38629 1.38629
425 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
426 33 2.81865 0.23582 2.88868 2.35662 33 - -
427 1.38629 1.38629 1.38629 1.38629
428 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
429 34 2.57915 2.25909 2.64442 0.28946 34 - -
430 1.38629 1.38629 1.38629 1.38629
431 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
432 35 2.81865 0.23582 2.88868 2.35662 35 - -
433 1.38629 1.38629 1.38629 1.38629
434 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
435 36 0.23862 2.84929 2.43386 2.70756 36 - -
436 1.38629 1.38629 1.38629 1.38629
437 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
438 37 2.53331 3.02441 0.20344 2.88069 37 - -
439 1.38629 1.38629 1.38629 1.38629
440 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
441 38 2.57915 2.25909 2.64442 0.28946 38 - -
442 1.38629 1.38629 1.38629 1.38629
443 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
444 39 2.53331 3.02441 0.20344 2.88069 39 - -
445 1.38629 1.38629 1.38629 1.38629
446 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
447 40 2.57915 2.25909 2.64442 0.28946 40 - -
448 1.38629 1.38629 1.38629 1.38629
449 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
450 41 2.81865 0.23582 2.88868 2.35662 41 - -
451 1.38629 1.38629 1.38629 1.38629
452 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
453 42 2.53331 3.02441 0.20344 2.88069 42 - -
454 1.38629 1.38629 1.38629 1.38629
455 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
456 43 0.23862 2.84929 2.43386 2.70756 43 - -
457 1.38629 1.38629 1.38629 1.38629
458 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
459 44 0.23862 2.84929 2.43386 2.70756 44 - -
460 1.38629 1.38629 1.38629 1.38629
461 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
462 45 2.81865 0.23582 2.88868 2.35662 45 - -
463 1.38629 1.38629 1.38629 1.38629
464 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
465 //
466 HMMER3/b [3.0 | March 2010]
467 NAME 3_End_Euglenozoa_58S_end_seven_long
468 LENG 45
469 ALPH DNA
470 RF no
471 CS no
472 MAP yes
473 DATE Fri Jan 20 21:20:40 2012
474 NSEQ 2
475 EFFN 2.000000
476 CKSUM 2052136868
477 STATS LOCAL MSV -7.3922 0.72832
478 STATS LOCAL VITERBI -8.2890 0.72832
479 STATS LOCAL FORWARD -3.4229 0.72832
480 HMM A C G T
481 m->m m->i m->d i->m i->i d->m d->d
482 COMPO 1.59740 1.17878 1.51108 1.31211
483 1.38629 1.38629 1.38629 1.38629
484 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
485 1 2.57915 2.25909 2.64442 0.28946 1 - -
486 1.38629 1.38629 1.38629 1.38629
487 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
488 2 2.81865 0.23582 2.88868 2.35662 2 - -
489 1.38629 1.38629 1.38629 1.38629
490 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
491 3 2.81865 0.23582 2.88868 2.35662 3 - -
492 1.38629 1.38629 1.38629 1.38629
493 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
494 4 2.57915 2.25909 2.64442 0.28946 4 - -
495 1.38629 1.38629 1.38629 1.38629
496 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
497 5 2.81865 0.23582 2.88868 2.35662 5 - -
498 1.38629 1.38629 1.38629 1.38629
499 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
500 6 2.53331 3.02441 0.20344 2.88069 6 - -
501 1.38629 1.38629 1.38629 1.38629
502 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
503 7 2.53331 3.02441 0.20344 2.88069 7 - -
504 1.38629 1.38629 1.38629 1.38629
505 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
506 8 0.23862 2.84929 2.43386 2.70756 8 - -
507 1.38629 1.38629 1.38629 1.38629
508 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
509 9 2.53331 3.02441 0.20344 2.88069 9 - -
510 1.38629 1.38629 1.38629 1.38629
511 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
512 10 2.57915 2.25909 2.64442 0.28946 10 - -
513 1.38629 1.38629 1.38629 1.38629
514 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
515 11 2.81865 0.23582 2.88868 2.35662 11 - -
516 1.38629 1.38629 1.38629 1.38629
517 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
518 12 0.23862 2.84929 2.43386 2.70756 12 - -
519 1.38629 1.38629 1.38629 1.38629
520 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
521 13 2.57915 2.25909 2.64442 0.28946 13 - -
522 1.38629 1.38629 1.38629 1.38629
523 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
524 14 2.81865 0.23582 2.88868 2.35662 14 - -
525 1.38629 1.38629 1.38629 1.38629
526 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
527 15 2.81865 0.23582 2.88868 2.35662 15 - -
528 1.38629 1.38629 1.38629 1.38629
529 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
530 16 2.81865 0.23582 2.88868 2.35662 16 - -
531 1.38629 1.38629 1.38629 1.38629
532 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
533 17 2.81865 0.23582 2.88868 2.35662 17 - -
534 1.38629 1.38629 1.38629 1.38629
535 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
536 18 2.53331 3.02441 0.20344 2.88069 18 - -
537 1.38629 1.38629 1.38629 1.38629
538 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
539 19 2.57915 2.25909 2.64442 0.28946 19 - -
540 1.38629 1.38629 1.38629 1.38629
541 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
542 20 2.53331 3.02441 0.20344 2.88069 20 - -
543 1.38629 1.38629 1.38629 1.38629
544 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
545 21 2.81865 0.23582 2.88868 2.35662 21 - -
546 1.38629 1.38629 1.38629 1.38629
547 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
548 22 0.23862 2.84929 2.43386 2.70756 22 - -
549 1.38629 1.38629 1.38629 1.38629
550 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
551 23 2.57915 2.25909 2.64442 0.28946 23 - -
552 1.38629 1.38629 1.38629 1.38629
553 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
554 24 2.53331 3.02441 0.20344 2.88069 24 - -
555 1.38629 1.38629 1.38629 1.38629
556 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
557 25 2.81865 0.23582 2.88868 2.35662 25 - -
558 1.38629 1.38629 1.38629 1.38629
559 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
560 26 2.81865 0.23582 2.88868 2.35662 26 - -
561 1.38629 1.38629 1.38629 1.38629
562 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
563 27 0.23862 2.84929 2.43386 2.70756 27 - -
564 1.38629 1.38629 1.38629 1.38629
565 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
566 28 2.57915 2.25909 2.64442 0.28946 28 - -
567 1.38629 1.38629 1.38629 1.38629
568 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
569 29 0.23862 2.84929 2.43386 2.70756 29 - -
570 1.38629 1.38629 1.38629 1.38629
571 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
572 30 2.57915 2.25909 2.64442 0.28946 30 - -
573 1.38629 1.38629 1.38629 1.38629
574 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
575 31 2.57915 2.25909 2.64442 0.28946 31 - -
576 1.38629 1.38629 1.38629 1.38629
577 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
578 32 2.57915 2.25909 2.64442 0.28946 32 - -
579 1.38629 1.38629 1.38629 1.38629
580 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
581 33 2.81865 0.23582 2.88868 2.35662 33 - -
582 1.38629 1.38629 1.38629 1.38629
583 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
584 34 2.57915 2.25909 2.64442 0.28946 34 - -
585 1.38629 1.38629 1.38629 1.38629
586 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
587 35 2.81865 0.23582 2.88868 2.35662 35 - -
588 1.38629 1.38629 1.38629 1.38629
589 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
590 36 0.23862 2.84929 2.43386 2.70756 36 - -
591 1.38629 1.38629 1.38629 1.38629
592 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
593 37 2.53331 3.02441 0.20344 2.88069 37 - -
594 1.38629 1.38629 1.38629 1.38629
595 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
596 38 2.57915 2.25909 2.64442 0.28946 38 - -
597 1.38629 1.38629 1.38629 1.38629
598 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
599 39 2.53331 3.02441 0.20344 2.88069 39 - -
600 1.38629 1.38629 1.38629 1.38629
601 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
602 40 2.57915 2.25909 2.64442 0.28946 40 - -
603 1.38629 1.38629 1.38629 1.38629
604 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
605 41 2.81865 0.23582 2.88868 2.35662 41 - -
606 1.38629 1.38629 1.38629 1.38629
607 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
608 42 2.53331 3.02441 0.20344 2.88069 42 - -
609 1.38629 1.38629 1.38629 1.38629
610 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
611 43 0.23862 2.84929 2.43386 2.70756 43 - -
612 1.38629 1.38629 1.38629 1.38629
613 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
614 44 0.23862 2.84929 2.43386 2.70756 44 - -
615 1.38629 1.38629 1.38629 1.38629
616 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
617 45 2.81865 0.23582 2.88868 2.35662 45 - -
618 1.38629 1.38629 1.38629 1.38629
619 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
620 //
621 HMMER3/b [3.0 | March 2010]
622 NAME 3_End_Euglenozoa_58S_end_six_long
623 LENG 45
624 ALPH DNA
625 RF no
626 CS no
627 MAP yes
628 DATE Fri Jan 20 21:20:34 2012
629 NSEQ 7
630 EFFN 3.325684
631 CKSUM 336432944
632 STATS LOCAL MSV -8.1816 0.71932
633 STATS LOCAL VITERBI -7.9070 0.71932
634 STATS LOCAL FORWARD -4.0754 0.71932
635 HMM A C G T
636 m->m m->i m->d i->m i->i d->m d->d
637 COMPO 1.64558 1.08090 1.62591 1.30535
638 1.38629 1.38629 1.38629 1.38629
639 0.03687 4.01199 4.01199 1.46634 0.26236 0.00000 *
640 1 3.08958 2.59576 3.13770 0.17852 1 - -
641 1.38629 1.38629 1.38629 1.38629
642 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
643 2 3.43422 0.13008 3.48363 2.82980 2 - -
644 1.38629 1.38629 1.38629 1.38629
645 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
646 3 3.08958 2.59576 3.13770 0.17852 3 - -
647 1.38629 1.38629 1.38629 1.38629
648 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
649 4 3.43422 0.13008 3.48363 2.82980 4 - -
650 1.38629 1.38629 1.38629 1.38629
651 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
652 5 3.08958 2.59576 3.13770 0.17852 5 - -
653 1.38629 1.38629 1.38629 1.38629
654 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
655 6 3.43422 0.13008 3.48363 2.82980 6 - -
656 1.38629 1.38629 1.38629 1.38629
657 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
658 7 2.94820 3.58873 0.11705 3.49350 7 - -
659 1.38629 1.38629 1.38629 1.38629
660 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
661 8 0.14177 3.38122 2.80255 3.28298 8 - -
662 1.38629 1.38629 1.38629 1.38629
663 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
664 9 2.94820 3.58873 0.11705 3.49350 9 - -
665 1.38629 1.38629 1.38629 1.38629
666 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
667 10 3.43422 0.13008 3.48363 2.82980 10 - -
668 1.38629 1.38629 1.38629 1.38629
669 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
670 11 3.43422 0.13008 3.48363 2.82980 11 - -
671 1.38629 1.38629 1.38629 1.38629
672 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
673 12 0.14177 3.38122 2.80255 3.28298 12 - -
674 1.38629 1.38629 1.38629 1.38629
675 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
676 13 3.08958 2.59576 3.13770 0.17852 13 - -
677 1.38629 1.38629 1.38629 1.38629
678 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
679 14 3.43422 0.13008 3.48363 2.82980 14 - -
680 1.38629 1.38629 1.38629 1.38629
681 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
682 15 3.43422 0.13008 3.48363 2.82980 15 - -
683 1.38629 1.38629 1.38629 1.38629
684 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
685 16 3.43422 0.13008 3.48363 2.82980 16 - -
686 1.38629 1.38629 1.38629 1.38629
687 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
688 17 3.43422 0.13008 3.48363 2.82980 17 - -
689 1.38629 1.38629 1.38629 1.38629
690 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
691 18 2.94820 3.58873 0.11705 3.49350 18 - -
692 1.38629 1.38629 1.38629 1.38629
693 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
694 19 3.08958 2.59576 3.13770 0.17852 19 - -
695 1.38629 1.38629 1.38629 1.38629
696 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
697 20 2.94820 3.58873 0.11705 3.49350 20 - -
698 1.38629 1.38629 1.38629 1.38629
699 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
700 21 3.43422 0.13008 3.48363 2.82980 21 - -
701 1.38629 1.38629 1.38629 1.38629
702 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
703 22 0.14177 3.38122 2.80255 3.28298 22 - -
704 1.38629 1.38629 1.38629 1.38629
705 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
706 23 3.08958 2.59576 3.13770 0.17852 23 - -
707 1.38629 1.38629 1.38629 1.38629
708 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
709 24 2.94820 3.58873 0.11705 3.49350 24 - -
710 1.38629 1.38629 1.38629 1.38629
711 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
712 25 3.43422 0.13008 3.48363 2.82980 25 - -
713 1.38629 1.38629 1.38629 1.38629
714 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
715 26 3.43422 0.13008 3.48363 2.82980 26 - -
716 1.38629 1.38629 1.38629 1.38629
717 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
718 27 0.14177 3.38122 2.80255 3.28298 27 - -
719 1.38629 1.38629 1.38629 1.38629
720 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
721 28 3.43422 0.13008 3.48363 2.82980 28 - -
722 1.38629 1.38629 1.38629 1.38629
723 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
724 29 0.14177 3.38122 2.80255 3.28298 29 - -
725 1.38629 1.38629 1.38629 1.38629
726 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
727 30 3.08958 2.59576 3.13770 0.17852 30 - -
728 1.38629 1.38629 1.38629 1.38629
729 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
730 31 3.08958 2.59576 3.13770 0.17852 31 - -
731 1.38629 1.38629 1.38629 1.38629
732 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
733 32 3.08958 2.59576 3.13770 0.17852 32 - -
734 1.38629 1.38629 1.38629 1.38629
735 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
736 33 3.43422 0.13008 3.48363 2.82980 33 - -
737 1.38629 1.38629 1.38629 1.38629
738 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
739 34 3.08958 2.59576 3.13770 0.17852 34 - -
740 1.38629 1.38629 1.38629 1.38629
741 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
742 35 3.43422 0.13008 3.48363 2.82980 35 - -
743 1.38629 1.38629 1.38629 1.38629
744 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
745 36 0.14177 3.38122 2.80255 3.28298 36 - -
746 1.38629 1.38629 1.38629 1.38629
747 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
748 37 2.94820 3.58873 0.11705 3.49350 37 - -
749 1.38629 1.38629 1.38629 1.38629
750 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
751 38 3.08958 2.59576 3.13770 0.17852 38 - -
752 1.38629 1.38629 1.38629 1.38629
753 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
754 39 2.94820 3.58873 0.11705 3.49350 39 - -
755 1.38629 1.38629 1.38629 1.38629
756 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
757 40 3.08958 2.59576 3.13770 0.17852 40 - -
758 1.38629 1.38629 1.38629 1.38629
759 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
760 41 3.43422 0.13008 3.48363 2.82980 41 - -
761 1.38629 1.38629 1.38629 1.38629
762 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
763 42 2.94820 3.58873 0.11705 3.49350 42 - -
764 1.38629 1.38629 1.38629 1.38629
765 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
766 43 0.14177 3.38122 2.80255 3.28298 43 - -
767 1.38629 1.38629 1.38629 1.38629
768 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
769 44 0.14177 3.38122 2.80255 3.28298 44 - -
770 1.38629 1.38629 1.38629 1.38629
771 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547
772 45 2.76326 1.89083 2.82328 0.31944 45 - -
773 1.38629 1.38629 1.38629 1.38629
774 0.01860 3.99373 * 1.46634 0.26236 0.00000 *
775 //
776 HMMER3/b [3.0 | March 2010]
777 NAME 3_End_Euglenozoa_58S_end_three_long
778 LENG 45
779 ALPH DNA
780 RF no
781 CS no
782 MAP yes
783 DATE Fri Jan 20 21:20:07 2012
784 NSEQ 10
785 EFFN 3.364258
786 CKSUM 1761663145
787 STATS LOCAL MSV -8.0329 0.71931
788 STATS LOCAL VITERBI -7.7753 0.71931
789 STATS LOCAL FORWARD -4.1828 0.71931
790 HMM A C G T
791 m->m m->i m->d i->m i->i d->m d->d
792 COMPO 1.64380 1.18343 1.62478 1.19213
793 1.38629 1.38629 1.38629 1.38629
794 0.03661 4.01895 4.01895 1.46634 0.26236 0.00000 *
795 1 3.44834 0.12841 3.49715 2.84007 1 - -
796 1.38629 1.38629 1.38629 1.38629
797 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
798 2 3.10197 2.60364 3.14962 0.17654 2 - -
799 1.38629 1.38629 1.38629 1.38629
800 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
801 3 3.44834 0.12841 3.49715 2.84007 3 - -
802 1.38629 1.38629 1.38629 1.38629
803 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
804 4 2.85311 2.04951 2.90999 0.27567 4 - -
805 1.38629 1.38629 1.38629 1.38629
806 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
807 5 0.14016 3.39348 2.81050 3.29640 5 - -
808 1.38629 1.38629 1.38629 1.38629
809 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
810 6 3.10197 2.60364 3.14962 0.17654 6 - -
811 1.38629 1.38629 1.38629 1.38629
812 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
813 7 3.10197 2.60364 3.14962 0.17654 7 - -
814 1.38629 1.38629 1.38629 1.38629
815 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
816 8 2.95673 3.60115 0.11570 3.50722 8 - -
817 1.38629 1.38629 1.38629 1.38629
818 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
819 9 3.10197 2.60364 3.14962 0.17654 9 - -
820 1.38629 1.38629 1.38629 1.38629
821 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
822 10 2.95673 3.60115 0.11570 3.50722 10 - -
823 1.38629 1.38629 1.38629 1.38629
824 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
825 11 3.10197 2.60364 3.14962 0.17654 11 - -
826 1.38629 1.38629 1.38629 1.38629
827 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
828 12 3.44834 0.12841 3.49715 2.84007 12 - -
829 1.38629 1.38629 1.38629 1.38629
830 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
831 13 0.14016 3.39348 2.81050 3.29640 13 - -
832 1.38629 1.38629 1.38629 1.38629
833 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
834 14 3.10197 2.60364 3.14962 0.17654 14 - -
835 1.38629 1.38629 1.38629 1.38629
836 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
837 15 3.44834 0.12841 3.49715 2.84007 15 - -
838 1.38629 1.38629 1.38629 1.38629
839 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
840 16 3.44834 0.12841 3.49715 2.84007 16 - -
841 1.38629 1.38629 1.38629 1.38629
842 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
843 17 3.44834 0.12841 3.49715 2.84007 17 - -
844 1.38629 1.38629 1.38629 1.38629
845 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
846 18 3.44834 0.12841 3.49715 2.84007 18 - -
847 1.38629 1.38629 1.38629 1.38629
848 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
849 19 2.95673 3.60115 0.11570 3.50722 19 - -
850 1.38629 1.38629 1.38629 1.38629
851 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
852 20 3.10197 2.60364 3.14962 0.17654 20 - -
853 1.38629 1.38629 1.38629 1.38629
854 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
855 21 2.95673 3.60115 0.11570 3.50722 21 - -
856 1.38629 1.38629 1.38629 1.38629
857 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
858 22 3.44834 0.12841 3.49715 2.84007 22 - -
859 1.38629 1.38629 1.38629 1.38629
860 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
861 23 0.14016 3.39348 2.81050 3.29640 23 - -
862 1.38629 1.38629 1.38629 1.38629
863 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
864 24 3.10197 2.60364 3.14962 0.17654 24 - -
865 1.38629 1.38629 1.38629 1.38629
866 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
867 25 2.95673 3.60115 0.11570 3.50722 25 - -
868 1.38629 1.38629 1.38629 1.38629
869 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
870 26 3.44834 0.12841 3.49715 2.84007 26 - -
871 1.38629 1.38629 1.38629 1.38629
872 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
873 27 3.44834 0.12841 3.49715 2.84007 27 - -
874 1.38629 1.38629 1.38629 1.38629
875 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
876 28 0.14016 3.39348 2.81050 3.29640 28 - -
877 1.38629 1.38629 1.38629 1.38629
878 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
879 29 3.10197 2.60364 3.14962 0.17654 29 - -
880 1.38629 1.38629 1.38629 1.38629
881 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
882 30 0.14016 3.39348 2.81050 3.29640 30 - -
883 1.38629 1.38629 1.38629 1.38629
884 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
885 31 3.10197 2.60364 3.14962 0.17654 31 - -
886 1.38629 1.38629 1.38629 1.38629
887 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
888 32 3.10197 2.60364 3.14962 0.17654 32 - -
889 1.38629 1.38629 1.38629 1.38629
890 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
891 33 3.44834 0.12841 3.49715 2.84007 33 - -
892 1.38629 1.38629 1.38629 1.38629
893 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
894 34 3.10197 2.60364 3.14962 0.17654 34 - -
895 1.38629 1.38629 1.38629 1.38629
896 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
897 35 3.44834 0.12841 3.49715 2.84007 35 - -
898 1.38629 1.38629 1.38629 1.38629
899 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
900 36 0.14016 3.39348 2.81050 3.29640 36 - -
901 1.38629 1.38629 1.38629 1.38629
902 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
903 37 2.95673 3.60115 0.11570 3.50722 37 - -
904 1.38629 1.38629 1.38629 1.38629
905 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
906 38 3.10197 2.60364 3.14962 0.17654 38 - -
907 1.38629 1.38629 1.38629 1.38629
908 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
909 39 2.95673 3.60115 0.11570 3.50722 39 - -
910 1.38629 1.38629 1.38629 1.38629
911 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
912 40 3.10197 2.60364 3.14962 0.17654 40 - -
913 1.38629 1.38629 1.38629 1.38629
914 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
915 41 3.44834 0.12841 3.49715 2.84007 41 - -
916 1.38629 1.38629 1.38629 1.38629
917 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
918 42 2.95673 3.60115 0.11570 3.50722 42 - -
919 1.38629 1.38629 1.38629 1.38629
920 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
921 43 0.14016 3.39348 2.81050 3.29640 43 - -
922 1.38629 1.38629 1.38629 1.38629
923 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
924 44 0.14016 3.39348 2.81050 3.29640 44 - -
925 1.38629 1.38629 1.38629 1.38629
926 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547
927 45 3.44834 0.12841 3.49715 2.84007 45 - -
928 1.38629 1.38629 1.38629 1.38629
929 0.01847 4.00081 * 1.46634 0.26236 0.00000 *
930 //
931 HMMER3/b [3.0 | March 2010]
932 NAME 3_End_Euglenozoa_58S_end_two_long
933 LENG 45
934 ALPH DNA
935 RF no
936 CS no
937 MAP yes
938 DATE Fri Jan 20 21:20:00 2012
939 NSEQ 3
940 EFFN 3.000000
941 CKSUM 1286592291
942 STATS LOCAL MSV -8.1373 0.72009
943 STATS LOCAL VITERBI -7.9096 0.72009
944 STATS LOCAL FORWARD -3.7767 0.72009
945 HMM A C G T
946 m->m m->i m->d i->m i->i d->m d->d
947 COMPO 1.93030 1.04903 1.32920 1.42741
948 1.38629 1.38629 1.38629 1.38629
949 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
950 1 3.30705 0.14631 3.36166 2.73626 1 - -
951 1.38629 1.38629 1.38629 1.38629
952 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
953 2 2.97980 2.52563 3.03204 0.19727 2 - -
954 1.38629 1.38629 1.38629 1.38629
955 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
956 3 3.30705 0.14631 3.36166 2.73626 3 - -
957 1.38629 1.38629 1.38629 1.38629
958 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
959 4 2.86982 3.47591 0.13017 3.36931 4 - -
960 1.38629 1.38629 1.38629 1.38629
961 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
962 5 3.30705 0.14631 3.36166 2.73626 5 - -
963 1.38629 1.38629 1.38629 1.38629
964 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
965 6 3.30705 0.14631 3.36166 2.73626 6 - -
966 1.38629 1.38629 1.38629 1.38629
967 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
968 7 0.15719 3.27118 2.73043 3.16274 7 - -
969 1.38629 1.38629 1.38629 1.38629
970 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
971 8 2.86982 3.47591 0.13017 3.36931 8 - -
972 1.38629 1.38629 1.38629 1.38629
973 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
974 9 2.97980 2.52563 3.03204 0.19727 9 - -
975 1.38629 1.38629 1.38629 1.38629
976 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
977 10 2.97980 2.52563 3.03204 0.19727 10 - -
978 1.38629 1.38629 1.38629 1.38629
979 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
980 11 3.30705 0.14631 3.36166 2.73626 11 - -
981 1.38629 1.38629 1.38629 1.38629
982 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
983 12 2.97980 2.52563 3.03204 0.19727 12 - -
984 1.38629 1.38629 1.38629 1.38629
985 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
986 13 3.30705 0.14631 3.36166 2.73626 13 - -
987 1.38629 1.38629 1.38629 1.38629
988 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
989 14 2.97980 2.52563 3.03204 0.19727 14 - -
990 1.38629 1.38629 1.38629 1.38629
991 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
992 15 2.86982 3.47591 0.13017 3.36931 15 - -
993 1.38629 1.38629 1.38629 1.38629
994 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
995 16 2.86982 3.47591 0.13017 3.36931 16 - -
996 1.38629 1.38629 1.38629 1.38629
997 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
998 17 3.30705 0.14631 3.36166 2.73626 17 - -
999 1.38629 1.38629 1.38629 1.38629
1000 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1001 18 2.86982 3.47591 0.13017 3.36931 18 - -
1002 1.38629 1.38629 1.38629 1.38629
1003 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1004 19 3.30705 0.14631 3.36166 2.73626 19 - -
1005 1.38629 1.38629 1.38629 1.38629
1006 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1007 20 2.97980 2.52563 3.03204 0.19727 20 - -
1008 1.38629 1.38629 1.38629 1.38629
1009 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1010 21 2.86982 3.47591 0.13017 3.36931 21 - -
1011 1.38629 1.38629 1.38629 1.38629
1012 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1013 22 3.30705 0.14631 3.36166 2.73626 22 - -
1014 1.38629 1.38629 1.38629 1.38629
1015 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1016 23 0.15719 3.27118 2.73043 3.16274 23 - -
1017 1.38629 1.38629 1.38629 1.38629
1018 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1019 24 3.30705 0.14631 3.36166 2.73626 24 - -
1020 1.38629 1.38629 1.38629 1.38629
1021 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1022 25 2.86982 3.47591 0.13017 3.36931 25 - -
1023 1.38629 1.38629 1.38629 1.38629
1024 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1025 26 3.30705 0.14631 3.36166 2.73626 26 - -
1026 1.38629 1.38629 1.38629 1.38629
1027 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1028 27 3.30705 0.14631 3.36166 2.73626 27 - -
1029 1.38629 1.38629 1.38629 1.38629
1030 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1031 28 3.30705 0.14631 3.36166 2.73626 28 - -
1032 1.38629 1.38629 1.38629 1.38629
1033 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1034 29 2.86982 3.47591 0.13017 3.36931 29 - -
1035 1.38629 1.38629 1.38629 1.38629
1036 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1037 30 3.30705 0.14631 3.36166 2.73626 30 - -
1038 1.38629 1.38629 1.38629 1.38629
1039 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1040 31 2.86982 3.47591 0.13017 3.36931 31 - -
1041 1.38629 1.38629 1.38629 1.38629
1042 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1043 32 2.97980 2.52563 3.03204 0.19727 32 - -
1044 1.38629 1.38629 1.38629 1.38629
1045 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1046 33 2.97980 2.52563 3.03204 0.19727 33 - -
1047 1.38629 1.38629 1.38629 1.38629
1048 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1049 34 2.97980 2.52563 3.03204 0.19727 34 - -
1050 1.38629 1.38629 1.38629 1.38629
1051 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1052 35 3.30705 0.14631 3.36166 2.73626 35 - -
1053 1.38629 1.38629 1.38629 1.38629
1054 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1055 36 0.15719 3.27118 2.73043 3.16274 36 - -
1056 1.38629 1.38629 1.38629 1.38629
1057 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1058 37 2.86982 3.47591 0.13017 3.36931 37 - -
1059 1.38629 1.38629 1.38629 1.38629
1060 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1061 38 2.97980 2.52563 3.03204 0.19727 38 - -
1062 1.38629 1.38629 1.38629 1.38629
1063 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1064 39 2.86982 3.47591 0.13017 3.36931 39 - -
1065 1.38629 1.38629 1.38629 1.38629
1066 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1067 40 3.30705 0.14631 3.36166 2.73626 40 - -
1068 1.38629 1.38629 1.38629 1.38629
1069 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1070 41 3.30705 0.14631 3.36166 2.73626 41 - -
1071 1.38629 1.38629 1.38629 1.38629
1072 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1073 42 2.86982 3.47591 0.13017 3.36931 42 - -
1074 1.38629 1.38629 1.38629 1.38629
1075 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1076 43 0.15719 3.27118 2.73043 3.16274 43 - -
1077 1.38629 1.38629 1.38629 1.38629
1078 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1079 44 2.97980 2.52563 3.03204 0.19727 44 - -
1080 1.38629 1.38629 1.38629 1.38629
1081 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1082 45 0.15719 3.27118 2.73043 3.16274 45 - -
1083 1.38629 1.38629 1.38629 1.38629
1084 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
1085 //
1086 HMMER3/b [3.0 | March 2010]
1087 NAME 2_5.8_Euglenozoa_58S_start_one_long
1088 LENG 45
1089 ALPH DNA
1090 RF no
1091 CS no
1092 MAP yes
1093 DATE Fri Jan 20 20:59:41 2012
1094 NSEQ 60
1095 EFFN 3.709717
1096 CKSUM 2951457206
1097 STATS LOCAL MSV -7.0592 0.71932
1098 STATS LOCAL VITERBI -7.6953 0.71932
1099 STATS LOCAL FORWARD -4.4755 0.71932
1100 HMM A C G T
1101 m->m m->i m->d i->m i->i d->m d->d
1102 COMPO 1.47506 1.53206 1.31293 1.25137
1103 1.38629 1.38629 1.38629 1.38629
1104 0.03443 4.07918 4.07918 1.46634 0.26236 0.00000 *
1105 1 2.81230 0.36257 2.87896 1.67210 1 - -
1106 1.38629 1.38629 1.38629 1.38629
1107 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1108 2 0.15880 3.31741 2.80140 2.99844 2 - -
1109 1.38629 1.38629 1.38629 1.38629
1110 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1111 3 0.12745 3.49654 2.87698 3.40944 3 - -
1112 1.38629 1.38629 1.38629 1.38629
1113 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1114 4 3.56652 0.11536 3.61013 2.92516 4 - -
1115 1.38629 1.38629 1.38629 1.38629
1116 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1117 5 3.02701 3.70437 0.10516 3.62145 5 - -
1118 1.38629 1.38629 1.38629 1.38629
1119 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1120 6 3.07464 2.34317 3.12362 0.20607 6 - -
1121 1.38629 1.38629 1.38629 1.38629
1122 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1123 7 3.02701 3.70437 0.10516 3.62145 7 - -
1124 1.38629 1.38629 1.38629 1.38629
1125 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1126 8 3.20757 2.67063 3.25111 0.16063 8 - -
1127 1.38629 1.38629 1.38629 1.38629
1128 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1129 9 3.56652 0.11536 3.61013 2.92516 9 - -
1130 1.38629 1.38629 1.38629 1.38629
1131 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1132 10 2.93962 3.51998 0.13184 3.19334 10 - -
1133 1.38629 1.38629 1.38629 1.38629
1134 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1135 11 3.56652 0.11536 3.61013 2.92516 11 - -
1136 1.38629 1.38629 1.38629 1.38629
1137 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1138 12 3.02701 3.70437 0.10516 3.62145 12 - -
1139 1.38629 1.38629 1.38629 1.38629
1140 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1141 13 0.12745 3.49654 2.87698 3.40944 13 - -
1142 1.38629 1.38629 1.38629 1.38629
1143 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1144 14 3.20757 2.67063 3.25111 0.16063 14 - -
1145 1.38629 1.38629 1.38629 1.38629
1146 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1147 15 3.02701 3.70437 0.10516 3.62145 15 - -
1148 1.38629 1.38629 1.38629 1.38629
1149 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1150 16 3.02701 3.70437 0.10516 3.62145 16 - -
1151 1.38629 1.38629 1.38629 1.38629
1152 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1153 17 0.12745 3.49654 2.87698 3.40944 17 - -
1154 1.38629 1.38629 1.38629 1.38629
1155 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1156 18 3.20757 2.67063 3.25111 0.16063 18 - -
1157 1.38629 1.38629 1.38629 1.38629
1158 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1159 19 3.02701 3.70437 0.10516 3.62145 19 - -
1160 1.38629 1.38629 1.38629 1.38629
1161 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1162 20 0.14615 3.42302 2.69379 3.33166 20 - -
1163 1.38629 1.38629 1.38629 1.38629
1164 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1165 21 3.56652 0.11536 3.61013 2.92516 21 - -
1166 1.38629 1.38629 1.38629 1.38629
1167 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1168 22 3.20757 2.67063 3.25111 0.16063 22 - -
1169 1.38629 1.38629 1.38629 1.38629
1170 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1171 23 3.20757 2.67063 3.25111 0.16063 23 - -
1172 1.38629 1.38629 1.38629 1.38629
1173 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1174 24 3.02701 3.70437 0.10516 3.62145 24 - -
1175 1.38629 1.38629 1.38629 1.38629
1176 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1177 25 3.02701 3.70437 0.10516 3.62145 25 - -
1178 1.38629 1.38629 1.38629 1.38629
1179 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1180 26 3.56652 0.11536 3.61013 2.92516 26 - -
1181 1.38629 1.38629 1.38629 1.38629
1182 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1183 27 3.20757 2.67063 3.25111 0.16063 27 - -
1184 1.38629 1.38629 1.38629 1.38629
1185 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1186 28 3.20757 2.67063 3.25111 0.16063 28 - -
1187 1.38629 1.38629 1.38629 1.38629
1188 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1189 29 3.56652 0.11536 3.61013 2.92516 29 - -
1190 1.38629 1.38629 1.38629 1.38629
1191 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1192 30 3.56652 0.11536 3.61013 2.92516 30 - -
1193 1.38629 1.38629 1.38629 1.38629
1194 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1195 31 2.93690 2.05163 2.99156 0.26366 31 - -
1196 1.38629 1.38629 1.38629 1.38629
1197 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1198 32 0.21966 3.18213 2.21242 3.07315 32 - -
1199 1.38629 1.38629 1.38629 1.38629
1200 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1201 33 2.65599 2.43617 2.15637 0.31947 33 - -
1202 1.38629 1.38629 1.38629 1.38629
1203 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1204 34 3.20757 2.67063 3.25111 0.16063 34 - -
1205 1.38629 1.38629 1.38629 1.38629
1206 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1207 35 3.20757 2.67063 3.25111 0.16063 35 - -
1208 1.38629 1.38629 1.38629 1.38629
1209 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1210 36 3.56652 0.11536 3.61013 2.92516 36 - -
1211 1.38629 1.38629 1.38629 1.38629
1212 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1213 37 2.90263 3.44668 0.14401 3.04937 37 - -
1214 1.38629 1.38629 1.38629 1.38629
1215 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1216 38 3.05824 2.30650 3.10791 0.21230 38 - -
1217 1.38629 1.38629 1.38629 1.38629
1218 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1219 39 3.20757 2.67063 3.25111 0.16063 39 - -
1220 1.38629 1.38629 1.38629 1.38629
1221 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1222 40 3.02701 3.70437 0.10516 3.62145 40 - -
1223 1.38629 1.38629 1.38629 1.38629
1224 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1225 41 0.12745 3.49654 2.87698 3.40944 41 - -
1226 1.38629 1.38629 1.38629 1.38629
1227 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1228 42 0.12745 3.49654 2.87698 3.40944 42 - -
1229 1.38629 1.38629 1.38629 1.38629
1230 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1231 43 2.56281 2.78185 0.23222 2.68510 43 - -
1232 1.38629 1.38629 1.38629 1.38629
1233 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1234 44 0.12745 3.49654 2.87698 3.40944 44 - -
1235 1.38629 1.38629 1.38629 1.38629
1236 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547
1237 45 0.12745 3.49654 2.87698 3.40944 45 - -
1238 1.38629 1.38629 1.38629 1.38629
1239 0.01736 4.06212 * 1.46634 0.26236 0.00000 *
1240 //
1241 HMMER3/b [3.0 | March 2010]
1242 NAME 2_5.8_Euglenozoa_58S_start_two_long
1243 LENG 45
1244 ALPH DNA
1245 RF no
1246 CS no
1247 MAP yes
1248 DATE Fri Jan 20 21:01:50 2012
1249 NSEQ 4
1250 EFFN 3.214844
1251 CKSUM 3244284289
1252 STATS LOCAL MSV -8.0494 0.71931
1253 STATS LOCAL VITERBI -7.8071 0.71931
1254 STATS LOCAL FORWARD -4.2819 0.71931
1255 HMM A C G T
1256 m->m m->i m->d i->m i->i d->m d->d
1257 COMPO 1.33872 1.32622 1.38203 1.50836
1258 1.38629 1.38629 1.38629 1.38629
1259 0.03763 3.99173 3.99173 1.46634 0.26236 0.00000 *
1260 1 3.39256 0.13515 3.44371 2.79938 1 - -
1261 1.38629 1.38629 1.38629 1.38629
1262 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1263 2 0.14663 3.34511 2.77903 3.24347 2 - -
1264 1.38629 1.38629 1.38629 1.38629
1265 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1266 3 0.14663 3.34511 2.77903 3.24347 3 - -
1267 1.38629 1.38629 1.38629 1.38629
1268 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1269 4 3.39256 0.13515 3.44371 2.79938 4 - -
1270 1.38629 1.38629 1.38629 1.38629
1271 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1272 5 3.05326 2.57263 3.10276 0.18448 5 - -
1273 1.38629 1.38629 1.38629 1.38629
1274 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1275 6 3.39256 0.13515 3.44371 2.79938 6 - -
1276 1.38629 1.38629 1.38629 1.38629
1277 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1278 7 0.14663 3.34511 2.77903 3.24347 7 - -
1279 1.38629 1.38629 1.38629 1.38629
1280 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1281 8 3.05326 2.57263 3.10276 0.18448 8 - -
1282 1.38629 1.38629 1.38629 1.38629
1283 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1284 9 0.14663 3.34511 2.77903 3.24347 9 - -
1285 1.38629 1.38629 1.38629 1.38629
1286 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1287 10 0.14663 3.34511 2.77903 3.24347 10 - -
1288 1.38629 1.38629 1.38629 1.38629
1289 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1290 11 3.39256 0.13515 3.44371 2.79938 11 - -
1291 1.38629 1.38629 1.38629 1.38629
1292 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1293 12 0.14663 3.34511 2.77903 3.24347 12 - -
1294 1.38629 1.38629 1.38629 1.38629
1295 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1296 13 2.92285 3.55196 0.12115 3.45295 13 - -
1297 1.38629 1.38629 1.38629 1.38629
1298 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1299 14 3.05326 2.57263 3.10276 0.18448 14 - -
1300 1.38629 1.38629 1.38629 1.38629
1301 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1302 15 2.92285 3.55196 0.12115 3.45295 15 - -
1303 1.38629 1.38629 1.38629 1.38629
1304 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1305 16 2.92285 3.55196 0.12115 3.45295 16 - -
1306 1.38629 1.38629 1.38629 1.38629
1307 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1308 17 0.14663 3.34511 2.77903 3.24347 17 - -
1309 1.38629 1.38629 1.38629 1.38629
1310 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1311 18 3.05326 2.57263 3.10276 0.18448 18 - -
1312 1.38629 1.38629 1.38629 1.38629
1313 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1314 19 2.92285 3.55196 0.12115 3.45295 19 - -
1315 1.38629 1.38629 1.38629 1.38629
1316 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1317 20 3.05326 2.57263 3.10276 0.18448 20 - -
1318 1.38629 1.38629 1.38629 1.38629
1319 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1320 21 3.39256 0.13515 3.44371 2.79938 21 - -
1321 1.38629 1.38629 1.38629 1.38629
1322 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1323 22 3.05326 2.57263 3.10276 0.18448 22 - -
1324 1.38629 1.38629 1.38629 1.38629
1325 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1326 23 3.05326 2.57263 3.10276 0.18448 23 - -
1327 1.38629 1.38629 1.38629 1.38629
1328 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1329 24 2.92285 3.55196 0.12115 3.45295 24 - -
1330 1.38629 1.38629 1.38629 1.38629
1331 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1332 25 2.92285 3.55196 0.12115 3.45295 25 - -
1333 1.38629 1.38629 1.38629 1.38629
1334 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1335 26 3.39256 0.13515 3.44371 2.79938 26 - -
1336 1.38629 1.38629 1.38629 1.38629
1337 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1338 27 3.05326 2.57263 3.10276 0.18448 27 - -
1339 1.38629 1.38629 1.38629 1.38629
1340 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1341 28 3.39256 0.13515 3.44371 2.79938 28 - -
1342 1.38629 1.38629 1.38629 1.38629
1343 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1344 29 3.39256 0.13515 3.44371 2.79938 29 - -
1345 1.38629 1.38629 1.38629 1.38629
1346 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1347 30 3.39256 0.13515 3.44371 2.79938 30 - -
1348 1.38629 1.38629 1.38629 1.38629
1349 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1350 31 3.39256 0.13515 3.44371 2.79938 31 - -
1351 1.38629 1.38629 1.38629 1.38629
1352 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1353 32 0.14663 3.34511 2.77903 3.24347 32 - -
1354 1.38629 1.38629 1.38629 1.38629
1355 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1356 33 2.92285 3.55196 0.12115 3.45295 33 - -
1357 1.38629 1.38629 1.38629 1.38629
1358 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1359 34 3.05326 2.57263 3.10276 0.18448 34 - -
1360 1.38629 1.38629 1.38629 1.38629
1361 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1362 35 3.39256 0.13515 3.44371 2.79938 35 - -
1363 1.38629 1.38629 1.38629 1.38629
1364 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1365 36 2.92285 3.55196 0.12115 3.45295 36 - -
1366 1.38629 1.38629 1.38629 1.38629
1367 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1368 37 0.14663 3.34511 2.77903 3.24347 37 - -
1369 1.38629 1.38629 1.38629 1.38629
1370 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1371 38 3.05326 2.57263 3.10276 0.18448 38 - -
1372 1.38629 1.38629 1.38629 1.38629
1373 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1374 39 2.92285 3.55196 0.12115 3.45295 39 - -
1375 1.38629 1.38629 1.38629 1.38629
1376 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1377 40 0.14663 3.34511 2.77903 3.24347 40 - -
1378 1.38629 1.38629 1.38629 1.38629
1379 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1380 41 0.14663 3.34511 2.77903 3.24347 41 - -
1381 1.38629 1.38629 1.38629 1.38629
1382 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1383 42 2.92285 3.55196 0.12115 3.45295 42 - -
1384 1.38629 1.38629 1.38629 1.38629
1385 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1386 43 2.92285 3.55196 0.12115 3.45295 43 - -
1387 1.38629 1.38629 1.38629 1.38629
1388 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1389 44 0.14663 3.34511 2.77903 3.24347 44 - -
1390 1.38629 1.38629 1.38629 1.38629
1391 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547
1392 45 3.39256 0.13515 3.44371 2.79938 45 - -
1393 1.38629 1.38629 1.38629 1.38629
1394 0.01899 3.97309 * 1.46634 0.26236 0.00000 *
1395 //
1396 HMMER3/b [3.0 | March 2010]
1397 NAME 4_LSU_Euglenozoa_4_LSU_start_one_long
1398 LENG 45
1399 ALPH DNA
1400 RF no
1401 CS no
1402 MAP yes
1403 DATE Fri Jan 20 21:57:31 2012
1404 NSEQ 3
1405 EFFN 3.000000
1406 CKSUM 1715626233
1407 STATS LOCAL MSV -8.0936 0.72023
1408 STATS LOCAL VITERBI -7.5457 0.72023
1409 STATS LOCAL FORWARD -3.8158 0.72023
1410 HMM A C G T
1411 m->m m->i m->d i->m i->i d->m d->d
1412 COMPO 1.28061 1.32941 1.44863 1.50234
1413 1.38629 1.38629 1.38629 1.38629
1414 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
1415 1 2.97980 2.52563 3.03204 0.19727 1 - -
1416 1.38629 1.38629 1.38629 1.38629
1417 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1418 2 2.97980 2.52563 3.03204 0.19727 2 - -
1419 1.38629 1.38629 1.38629 1.38629
1420 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1421 3 3.30705 0.14631 3.36166 2.73626 3 - -
1422 1.38629 1.38629 1.38629 1.38629
1423 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1424 4 0.15719 3.27118 2.73043 3.16274 4 - -
1425 1.38629 1.38629 1.38629 1.38629
1426 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1427 5 2.86982 3.47591 0.13017 3.36931 5 - -
1428 1.38629 1.38629 1.38629 1.38629
1429 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1430 6 0.15719 3.27118 2.73043 3.16274 6 - -
1431 1.38629 1.38629 1.38629 1.38629
1432 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1433 7 3.30705 0.14631 3.36166 2.73626 7 - -
1434 1.38629 1.38629 1.38629 1.38629
1435 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1436 8 3.30705 0.14631 3.36166 2.73626 8 - -
1437 1.38629 1.38629 1.38629 1.38629
1438 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1439 9 2.97980 2.52563 3.03204 0.19727 9 - -
1440 1.38629 1.38629 1.38629 1.38629
1441 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1442 10 2.86982 3.47591 0.13017 3.36931 10 - -
1443 1.38629 1.38629 1.38629 1.38629
1444 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1445 11 0.15719 3.27118 2.73043 3.16274 11 - -
1446 1.38629 1.38629 1.38629 1.38629
1447 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1448 12 2.86982 3.47591 0.13017 3.36931 12 - -
1449 1.38629 1.38629 1.38629 1.38629
1450 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1451 13 2.97980 2.52563 3.03204 0.19727 13 - -
1452 1.38629 1.38629 1.38629 1.38629
1453 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1454 14 2.86982 3.47591 0.13017 3.36931 14 - -
1455 1.38629 1.38629 1.38629 1.38629
1456 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1457 15 2.97980 2.52563 3.03204 0.19727 15 - -
1458 1.38629 1.38629 1.38629 1.38629
1459 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1460 16 2.86982 3.47591 0.13017 3.36931 16 - -
1461 1.38629 1.38629 1.38629 1.38629
1462 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1463 17 2.86982 3.47591 0.13017 3.36931 17 - -
1464 1.38629 1.38629 1.38629 1.38629
1465 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1466 18 3.30705 0.14631 3.36166 2.73626 18 - -
1467 1.38629 1.38629 1.38629 1.38629
1468 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1469 19 0.15719 3.27118 2.73043 3.16274 19 - -
1470 1.38629 1.38629 1.38629 1.38629
1471 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1472 20 2.86982 3.47591 0.13017 3.36931 20 - -
1473 1.38629 1.38629 1.38629 1.38629
1474 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1475 21 2.86982 3.47591 0.13017 3.36931 21 - -
1476 1.38629 1.38629 1.38629 1.38629
1477 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1478 22 0.15719 3.27118 2.73043 3.16274 22 - -
1479 1.38629 1.38629 1.38629 1.38629
1480 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1481 23 3.30705 0.14631 3.36166 2.73626 23 - -
1482 1.38629 1.38629 1.38629 1.38629
1483 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1484 24 3.30705 0.14631 3.36166 2.73626 24 - -
1485 1.38629 1.38629 1.38629 1.38629
1486 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1487 25 0.15719 3.27118 2.73043 3.16274 25 - -
1488 1.38629 1.38629 1.38629 1.38629
1489 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1490 26 3.30705 0.14631 3.36166 2.73626 26 - -
1491 1.38629 1.38629 1.38629 1.38629
1492 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1493 27 3.30705 0.14631 3.36166 2.73626 27 - -
1494 1.38629 1.38629 1.38629 1.38629
1495 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1496 28 3.30705 0.14631 3.36166 2.73626 28 - -
1497 1.38629 1.38629 1.38629 1.38629
1498 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1499 29 2.86982 3.47591 0.13017 3.36931 29 - -
1500 1.38629 1.38629 1.38629 1.38629
1501 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1502 30 3.30705 0.14631 3.36166 2.73626 30 - -
1503 1.38629 1.38629 1.38629 1.38629
1504 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1505 31 2.97980 2.52563 3.03204 0.19727 31 - -
1506 1.38629 1.38629 1.38629 1.38629
1507 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1508 32 0.15719 3.27118 2.73043 3.16274 32 - -
1509 1.38629 1.38629 1.38629 1.38629
1510 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1511 33 0.15719 3.27118 2.73043 3.16274 33 - -
1512 1.38629 1.38629 1.38629 1.38629
1513 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1514 34 0.15719 3.27118 2.73043 3.16274 34 - -
1515 1.38629 1.38629 1.38629 1.38629
1516 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1517 35 3.30705 0.14631 3.36166 2.73626 35 - -
1518 1.38629 1.38629 1.38629 1.38629
1519 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1520 36 2.97980 2.52563 3.03204 0.19727 36 - -
1521 1.38629 1.38629 1.38629 1.38629
1522 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1523 37 2.97980 2.52563 3.03204 0.19727 37 - -
1524 1.38629 1.38629 1.38629 1.38629
1525 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1526 38 0.15719 3.27118 2.73043 3.16274 38 - -
1527 1.38629 1.38629 1.38629 1.38629
1528 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1529 39 0.15719 3.27118 2.73043 3.16274 39 - -
1530 1.38629 1.38629 1.38629 1.38629
1531 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1532 40 2.86982 3.47591 0.13017 3.36931 40 - -
1533 1.38629 1.38629 1.38629 1.38629
1534 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1535 41 3.30705 0.14631 3.36166 2.73626 41 - -
1536 1.38629 1.38629 1.38629 1.38629
1537 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1538 42 0.15719 3.27118 2.73043 3.16274 42 - -
1539 1.38629 1.38629 1.38629 1.38629
1540 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1541 43 2.97980 2.52563 3.03204 0.19727 43 - -
1542 1.38629 1.38629 1.38629 1.38629
1543 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1544 44 0.15719 3.27118 2.73043 3.16274 44 - -
1545 1.38629 1.38629 1.38629 1.38629
1546 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
1547 45 2.97980 2.52563 3.03204 0.19727 45 - -
1548 1.38629 1.38629 1.38629 1.38629
1549 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
1550 //
1551 HMMER3/b [3.0 | March 2010]
1552 NAME 4_LSU_Euglenozoa_4_LSU_start_two_long
1553 LENG 45
1554 ALPH DNA
1555 RF no
1556 CS no
1557 MAP yes
1558 DATE Fri Jan 20 21:57:39 2012
1559 NSEQ 5
1560 EFFN 3.129883
1561 CKSUM 3692703187
1562 STATS LOCAL MSV -8.1014 0.71932
1563 STATS LOCAL VITERBI -7.6315 0.71932
1564 STATS LOCAL FORWARD -3.8081 0.71932
1565 HMM A C G T
1566 m->m m->i m->d i->m i->i d->m d->d
1567 COMPO 1.28086 1.16099 1.38291 1.84405
1568 1.38629 1.38629 1.38629 1.38629
1569 0.03825 3.97591 3.97591 1.46634 0.26236 0.00000 *
1570 1 3.35951 0.13934 3.41202 2.77509 1 - -
1571 1.38629 1.38629 1.38629 1.38629
1572 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1573 2 0.15061 3.31651 2.76031 3.21221 2 - -
1574 1.38629 1.38629 1.38629 1.38629
1575 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1576 3 3.35951 0.13934 3.41202 2.77509 3 - -
1577 1.38629 1.38629 1.38629 1.38629
1578 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1579 4 0.15061 3.31651 2.76031 3.21221 4 - -
1580 1.38629 1.38629 1.38629 1.38629
1581 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1582 5 2.90252 3.52266 0.12454 3.42069 5 - -
1583 1.38629 1.38629 1.38629 1.38629
1584 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1585 6 0.15061 3.31651 2.76031 3.21221 6 - -
1586 1.38629 1.38629 1.38629 1.38629
1587 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1588 7 3.35951 0.13934 3.41202 2.77509 7 - -
1589 1.38629 1.38629 1.38629 1.38629
1590 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1591 8 3.35951 0.13934 3.41202 2.77509 8 - -
1592 1.38629 1.38629 1.38629 1.38629
1593 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1594 9 3.02470 2.55440 3.07528 0.18933 9 - -
1595 1.38629 1.38629 1.38629 1.38629
1596 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1597 10 2.90252 3.52266 0.12454 3.42069 10 - -
1598 1.38629 1.38629 1.38629 1.38629
1599 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1600 11 0.15061 3.31651 2.76031 3.21221 11 - -
1601 1.38629 1.38629 1.38629 1.38629
1602 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1603 12 2.90252 3.52266 0.12454 3.42069 12 - -
1604 1.38629 1.38629 1.38629 1.38629
1605 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1606 13 3.35951 0.13934 3.41202 2.77509 13 - -
1607 1.38629 1.38629 1.38629 1.38629
1608 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1609 14 2.90252 3.52266 0.12454 3.42069 14 - -
1610 1.38629 1.38629 1.38629 1.38629
1611 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1612 15 3.35951 0.13934 3.41202 2.77509 15 - -
1613 1.38629 1.38629 1.38629 1.38629
1614 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1615 16 2.90252 3.52266 0.12454 3.42069 16 - -
1616 1.38629 1.38629 1.38629 1.38629
1617 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1618 17 2.90252 3.52266 0.12454 3.42069 17 - -
1619 1.38629 1.38629 1.38629 1.38629
1620 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1621 18 3.35951 0.13934 3.41202 2.77509 18 - -
1622 1.38629 1.38629 1.38629 1.38629
1623 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1624 19 0.15061 3.31651 2.76031 3.21221 19 - -
1625 1.38629 1.38629 1.38629 1.38629
1626 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1627 20 2.90252 3.52266 0.12454 3.42069 20 - -
1628 1.38629 1.38629 1.38629 1.38629
1629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1630 21 2.90252 3.52266 0.12454 3.42069 21 - -
1631 1.38629 1.38629 1.38629 1.38629
1632 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1633 22 0.15061 3.31651 2.76031 3.21221 22 - -
1634 1.38629 1.38629 1.38629 1.38629
1635 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1636 23 3.35951 0.13934 3.41202 2.77509 23 - -
1637 1.38629 1.38629 1.38629 1.38629
1638 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1639 24 3.02470 2.55440 3.07528 0.18933 24 - -
1640 1.38629 1.38629 1.38629 1.38629
1641 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1642 25 0.15061 3.31651 2.76031 3.21221 25 - -
1643 1.38629 1.38629 1.38629 1.38629
1644 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1645 26 3.35951 0.13934 3.41202 2.77509 26 - -
1646 1.38629 1.38629 1.38629 1.38629
1647 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1648 27 3.35951 0.13934 3.41202 2.77509 27 - -
1649 1.38629 1.38629 1.38629 1.38629
1650 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1651 28 3.35951 0.13934 3.41202 2.77509 28 - -
1652 1.38629 1.38629 1.38629 1.38629
1653 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1654 29 2.90252 3.52266 0.12454 3.42069 29 - -
1655 1.38629 1.38629 1.38629 1.38629
1656 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1657 30 3.35951 0.13934 3.41202 2.77509 30 - -
1658 1.38629 1.38629 1.38629 1.38629
1659 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1660 31 3.35951 0.13934 3.41202 2.77509 31 - -
1661 1.38629 1.38629 1.38629 1.38629
1662 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1663 32 2.90252 3.52266 0.12454 3.42069 32 - -
1664 1.38629 1.38629 1.38629 1.38629
1665 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1666 33 0.15061 3.31651 2.76031 3.21221 33 - -
1667 1.38629 1.38629 1.38629 1.38629
1668 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1669 34 0.15061 3.31651 2.76031 3.21221 34 - -
1670 1.38629 1.38629 1.38629 1.38629
1671 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1672 35 3.35951 0.13934 3.41202 2.77509 35 - -
1673 1.38629 1.38629 1.38629 1.38629
1674 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1675 36 3.02470 2.55440 3.07528 0.18933 36 - -
1676 1.38629 1.38629 1.38629 1.38629
1677 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1678 37 3.02470 2.55440 3.07528 0.18933 37 - -
1679 1.38629 1.38629 1.38629 1.38629
1680 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1681 38 0.15061 3.31651 2.76031 3.21221 38 - -
1682 1.38629 1.38629 1.38629 1.38629
1683 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1684 39 0.15061 3.31651 2.76031 3.21221 39 - -
1685 1.38629 1.38629 1.38629 1.38629
1686 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1687 40 2.90252 3.52266 0.12454 3.42069 40 - -
1688 1.38629 1.38629 1.38629 1.38629
1689 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1690 41 3.35951 0.13934 3.41202 2.77509 41 - -
1691 1.38629 1.38629 1.38629 1.38629
1692 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1693 42 0.15061 3.31651 2.76031 3.21221 42 - -
1694 1.38629 1.38629 1.38629 1.38629
1695 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1696 43 3.02470 2.55440 3.07528 0.18933 43 - -
1697 1.38629 1.38629 1.38629 1.38629
1698 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1699 44 0.15061 3.31651 2.76031 3.21221 44 - -
1700 1.38629 1.38629 1.38629 1.38629
1701 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547
1702 45 3.02470 2.55440 3.07528 0.18933 45 - -
1703 1.38629 1.38629 1.38629 1.38629
1704 0.01931 3.95697 * 1.46634 0.26236 0.00000 *
1705 //
1706 HMMER3/b [3.0 | March 2010]
1707 NAME 4_LSU_Euglenozoa_4_LSU_start_three_long
1708 LENG 45
1709 ALPH DNA
1710 RF no
1711 CS no
1712 MAP yes
1713 DATE Fri Jan 20 21:57:46 2012
1714 NSEQ 2
1715 EFFN 2.000000
1716 CKSUM 2807236311
1717 STATS LOCAL MSV -7.3996 0.72794
1718 STATS LOCAL VITERBI -8.2623 0.72794
1719 STATS LOCAL FORWARD -3.4447 0.72794
1720 HMM A C G T
1721 m->m m->i m->d i->m i->i d->m d->d
1722 COMPO 1.23771 1.40555 1.43188 1.48784
1723 1.38629 1.38629 1.38629 1.38629
1724 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
1725 1 2.57915 2.25909 2.64442 0.28946 1 - -
1726 1.38629 1.38629 1.38629 1.38629
1727 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1728 2 0.23862 2.84929 2.43386 2.70756 2 - -
1729 1.38629 1.38629 1.38629 1.38629
1730 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1731 3 2.57915 2.25909 2.64442 0.28946 3 - -
1732 1.38629 1.38629 1.38629 1.38629
1733 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1734 4 0.23862 2.84929 2.43386 2.70756 4 - -
1735 1.38629 1.38629 1.38629 1.38629
1736 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1737 5 2.53331 3.02441 0.20344 2.88069 5 - -
1738 1.38629 1.38629 1.38629 1.38629
1739 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1740 6 0.23862 2.84929 2.43386 2.70756 6 - -
1741 1.38629 1.38629 1.38629 1.38629
1742 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1743 7 2.81865 0.23582 2.88868 2.35662 7 - -
1744 1.38629 1.38629 1.38629 1.38629
1745 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1746 8 2.81865 0.23582 2.88868 2.35662 8 - -
1747 1.38629 1.38629 1.38629 1.38629
1748 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1749 9 2.57915 2.25909 2.64442 0.28946 9 - -
1750 1.38629 1.38629 1.38629 1.38629
1751 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1752 10 2.53331 3.02441 0.20344 2.88069 10 - -
1753 1.38629 1.38629 1.38629 1.38629
1754 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1755 11 0.23862 2.84929 2.43386 2.70756 11 - -
1756 1.38629 1.38629 1.38629 1.38629
1757 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1758 12 2.53331 3.02441 0.20344 2.88069 12 - -
1759 1.38629 1.38629 1.38629 1.38629
1760 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1761 13 2.57915 2.25909 2.64442 0.28946 13 - -
1762 1.38629 1.38629 1.38629 1.38629
1763 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1764 14 0.23862 2.84929 2.43386 2.70756 14 - -
1765 1.38629 1.38629 1.38629 1.38629
1766 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1767 15 2.57915 2.25909 2.64442 0.28946 15 - -
1768 1.38629 1.38629 1.38629 1.38629
1769 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1770 16 2.53331 3.02441 0.20344 2.88069 16 - -
1771 1.38629 1.38629 1.38629 1.38629
1772 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1773 17 2.53331 3.02441 0.20344 2.88069 17 - -
1774 1.38629 1.38629 1.38629 1.38629
1775 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1776 18 2.81865 0.23582 2.88868 2.35662 18 - -
1777 1.38629 1.38629 1.38629 1.38629
1778 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1779 19 0.23862 2.84929 2.43386 2.70756 19 - -
1780 1.38629 1.38629 1.38629 1.38629
1781 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1782 20 2.53331 3.02441 0.20344 2.88069 20 - -
1783 1.38629 1.38629 1.38629 1.38629
1784 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1785 21 2.53331 3.02441 0.20344 2.88069 21 - -
1786 1.38629 1.38629 1.38629 1.38629
1787 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1788 22 0.23862 2.84929 2.43386 2.70756 22 - -
1789 1.38629 1.38629 1.38629 1.38629
1790 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1791 23 2.81865 0.23582 2.88868 2.35662 23 - -
1792 1.38629 1.38629 1.38629 1.38629
1793 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1794 24 2.57915 2.25909 2.64442 0.28946 24 - -
1795 1.38629 1.38629 1.38629 1.38629
1796 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1797 25 0.23862 2.84929 2.43386 2.70756 25 - -
1798 1.38629 1.38629 1.38629 1.38629
1799 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1800 26 2.81865 0.23582 2.88868 2.35662 26 - -
1801 1.38629 1.38629 1.38629 1.38629
1802 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1803 27 2.81865 0.23582 2.88868 2.35662 27 - -
1804 1.38629 1.38629 1.38629 1.38629
1805 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1806 28 2.81865 0.23582 2.88868 2.35662 28 - -
1807 1.38629 1.38629 1.38629 1.38629
1808 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1809 29 2.53331 3.02441 0.20344 2.88069 29 - -
1810 1.38629 1.38629 1.38629 1.38629
1811 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1812 30 2.81865 0.23582 2.88868 2.35662 30 - -
1813 1.38629 1.38629 1.38629 1.38629
1814 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1815 31 2.81865 0.23582 2.88868 2.35662 31 - -
1816 1.38629 1.38629 1.38629 1.38629
1817 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1818 32 2.53331 3.02441 0.20344 2.88069 32 - -
1819 1.38629 1.38629 1.38629 1.38629
1820 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1821 33 0.23862 2.84929 2.43386 2.70756 33 - -
1822 1.38629 1.38629 1.38629 1.38629
1823 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1824 34 0.23862 2.84929 2.43386 2.70756 34 - -
1825 1.38629 1.38629 1.38629 1.38629
1826 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1827 35 2.81865 0.23582 2.88868 2.35662 35 - -
1828 1.38629 1.38629 1.38629 1.38629
1829 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1830 36 2.57915 2.25909 2.64442 0.28946 36 - -
1831 1.38629 1.38629 1.38629 1.38629
1832 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1833 37 2.57915 2.25909 2.64442 0.28946 37 - -
1834 1.38629 1.38629 1.38629 1.38629
1835 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1836 38 0.23862 2.84929 2.43386 2.70756 38 - -
1837 1.38629 1.38629 1.38629 1.38629
1838 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1839 39 0.23862 2.84929 2.43386 2.70756 39 - -
1840 1.38629 1.38629 1.38629 1.38629
1841 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1842 40 2.53331 3.02441 0.20344 2.88069 40 - -
1843 1.38629 1.38629 1.38629 1.38629
1844 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1845 41 2.81865 0.23582 2.88868 2.35662 41 - -
1846 1.38629 1.38629 1.38629 1.38629
1847 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1848 42 0.23862 2.84929 2.43386 2.70756 42 - -
1849 1.38629 1.38629 1.38629 1.38629
1850 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1851 43 2.57915 2.25909 2.64442 0.28946 43 - -
1852 1.38629 1.38629 1.38629 1.38629
1853 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1854 44 0.23862 2.84929 2.43386 2.70756 44 - -
1855 1.38629 1.38629 1.38629 1.38629
1856 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1857 45 2.57915 2.25909 2.64442 0.28946 45 - -
1858 1.38629 1.38629 1.38629 1.38629
1859 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
1860 //
1861 HMMER3/b [3.0 | March 2010]
1862 NAME 1_SSU_Euglenozoa_1_SSU_end_one_long
1863 LENG 45
1864 ALPH DNA
1865 RF no
1866 CS no
1867 MAP yes
1868 DATE Fri Jan 20 20:54:59 2012
1869 NSEQ 19
1870 EFFN 3.400146
1871 CKSUM 2809811454
1872 STATS LOCAL MSV -7.3985 0.71931
1873 STATS LOCAL VITERBI -7.6109 0.71931
1874 STATS LOCAL FORWARD -4.3416 0.71931
1875 HMM A C G T
1876 m->m m->i m->d i->m i->i d->m d->d
1877 COMPO 1.31740 1.61716 1.24218 1.40668
1878 1.38629 1.38629 1.38629 1.38629
1879 0.03637 4.02538 4.02538 1.46634 0.26236 0.00000 *
1880 1 0.13870 3.40475 2.81780 3.30874 1 - -
1881 1.38629 1.38629 1.38629 1.38629
1882 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1883 2 2.96453 3.61254 0.11448 3.51980 2 - -
1884 1.38629 1.38629 1.38629 1.38629
1885 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1886 3 3.11339 2.61089 3.16060 0.17473 3 - -
1887 1.38629 1.38629 1.38629 1.38629
1888 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1889 4 3.46130 0.12689 3.50955 2.84948 4 - -
1890 1.38629 1.38629 1.38629 1.38629
1891 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1892 5 2.96453 3.61254 0.11448 3.51980 5 - -
1893 1.38629 1.38629 1.38629 1.38629
1894 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1895 6 3.11339 2.61089 3.16060 0.17473 6 - -
1896 1.38629 1.38629 1.38629 1.38629
1897 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1898 7 0.13870 3.40475 2.81780 3.30874 7 - -
1899 1.38629 1.38629 1.38629 1.38629
1900 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1901 8 0.13870 3.40475 2.81780 3.30874 8 - -
1902 1.38629 1.38629 1.38629 1.38629
1903 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1904 9 3.46130 0.12689 3.50955 2.84948 9 - -
1905 1.38629 1.38629 1.38629 1.38629
1906 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1907 10 0.13870 3.40475 2.81780 3.30874 10 - -
1908 1.38629 1.38629 1.38629 1.38629
1909 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1910 11 0.13870 3.40475 2.81780 3.30874 11 - -
1911 1.38629 1.38629 1.38629 1.38629
1912 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1913 12 2.96453 3.61254 0.11448 3.51980 12 - -
1914 1.38629 1.38629 1.38629 1.38629
1915 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1916 13 2.96453 3.61254 0.11448 3.51980 13 - -
1917 1.38629 1.38629 1.38629 1.38629
1918 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1919 14 3.11339 2.61089 3.16060 0.17473 14 - -
1920 1.38629 1.38629 1.38629 1.38629
1921 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1922 15 0.13870 3.40475 2.81780 3.30874 15 - -
1923 1.38629 1.38629 1.38629 1.38629
1924 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1925 16 2.96453 3.61254 0.11448 3.51980 16 - -
1926 1.38629 1.38629 1.38629 1.38629
1927 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1928 17 3.46130 0.12689 3.50955 2.84948 17 - -
1929 1.38629 1.38629 1.38629 1.38629
1930 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1931 18 3.11339 2.61089 3.16060 0.17473 18 - -
1932 1.38629 1.38629 1.38629 1.38629
1933 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1934 19 2.96453 3.61254 0.11448 3.51980 19 - -
1935 1.38629 1.38629 1.38629 1.38629
1936 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1937 20 3.11339 2.61089 3.16060 0.17473 20 - -
1938 1.38629 1.38629 1.38629 1.38629
1939 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1940 21 0.13870 3.40475 2.81780 3.30874 21 - -
1941 1.38629 1.38629 1.38629 1.38629
1942 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1943 22 2.96453 3.61254 0.11448 3.51980 22 - -
1944 1.38629 1.38629 1.38629 1.38629
1945 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1946 23 2.96453 3.61254 0.11448 3.51980 23 - -
1947 1.38629 1.38629 1.38629 1.38629
1948 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1949 24 3.11339 2.61089 3.16060 0.17473 24 - -
1950 1.38629 1.38629 1.38629 1.38629
1951 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1952 25 2.96453 3.61254 0.11448 3.51980 25 - -
1953 1.38629 1.38629 1.38629 1.38629
1954 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1955 26 0.13870 3.40475 2.81780 3.30874 26 - -
1956 1.38629 1.38629 1.38629 1.38629
1957 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1958 27 0.13870 3.40475 2.81780 3.30874 27 - -
1959 1.38629 1.38629 1.38629 1.38629
1960 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1961 28 3.46130 0.12689 3.50955 2.84948 28 - -
1962 1.38629 1.38629 1.38629 1.38629
1963 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1964 29 3.46130 0.12689 3.50955 2.84948 29 - -
1965 1.38629 1.38629 1.38629 1.38629
1966 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1967 30 2.42061 2.46773 2.82739 0.26502 30 - -
1968 1.38629 1.38629 1.38629 1.38629
1969 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1970 31 2.96453 3.61254 0.11448 3.51980 31 - -
1971 1.38629 1.38629 1.38629 1.38629
1972 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1973 32 3.46130 0.12689 3.50955 2.84948 32 - -
1974 1.38629 1.38629 1.38629 1.38629
1975 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1976 33 0.13870 3.40475 2.81780 3.30874 33 - -
1977 1.38629 1.38629 1.38629 1.38629
1978 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1979 34 2.96453 3.61254 0.11448 3.51980 34 - -
1980 1.38629 1.38629 1.38629 1.38629
1981 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1982 35 3.46130 0.12689 3.50955 2.84948 35 - -
1983 1.38629 1.38629 1.38629 1.38629
1984 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1985 36 3.11339 2.61089 3.16060 0.17473 36 - -
1986 1.38629 1.38629 1.38629 1.38629
1987 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1988 37 2.96453 3.61254 0.11448 3.51980 37 - -
1989 1.38629 1.38629 1.38629 1.38629
1990 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1991 38 2.96453 3.61254 0.11448 3.51980 38 - -
1992 1.38629 1.38629 1.38629 1.38629
1993 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1994 39 0.13870 3.40475 2.81780 3.30874 39 - -
1995 1.38629 1.38629 1.38629 1.38629
1996 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
1997 40 3.11339 2.61089 3.16060 0.17473 40 - -
1998 1.38629 1.38629 1.38629 1.38629
1999 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
2000 41 3.46130 0.12689 3.50955 2.84948 41 - -
2001 1.38629 1.38629 1.38629 1.38629
2002 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
2003 42 0.13870 3.40475 2.81780 3.30874 42 - -
2004 1.38629 1.38629 1.38629 1.38629
2005 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
2006 43 2.95906 2.25050 3.01199 0.23119 43 - -
2007 1.38629 1.38629 1.38629 1.38629
2008 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
2009 44 3.11339 2.61089 3.16060 0.17473 44 - -
2010 1.38629 1.38629 1.38629 1.38629
2011 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547
2012 45 1.62709 2.24353 2.39119 0.50105 45 - -
2013 1.38629 1.38629 1.38629 1.38629
2014 0.01835 4.00736 * 1.46634 0.26236 0.00000 *
2015 //
2016 HMMER3/b [3.0 | March 2010]
2017 NAME 1_SSU_Euglenozoa_1_SSU_end_two_long
2018 LENG 45
2019 ALPH DNA
2020 RF no
2021 CS no
2022 MAP yes
2023 DATE Fri Jan 20 20:55:06 2012
2024 NSEQ 3
2025 EFFN 3.000000
2026 CKSUM 4020611059
2027 STATS LOCAL MSV -8.1570 0.72021
2028 STATS LOCAL VITERBI -7.7566 0.72021
2029 STATS LOCAL FORWARD -4.0990 0.72021
2030 HMM A C G T
2031 m->m m->i m->d i->m i->i d->m d->d
2032 COMPO 1.33642 1.53820 1.24991 1.44428
2033 1.38629 1.38629 1.38629 1.38629
2034 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
2035 1 3.30705 0.14631 3.36166 2.73626 1 - -
2036 1.38629 1.38629 1.38629 1.38629
2037 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2038 2 2.86982 3.47591 0.13017 3.36931 2 - -
2039 1.38629 1.38629 1.38629 1.38629
2040 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2041 3 2.97980 2.52563 3.03204 0.19727 3 - -
2042 1.38629 1.38629 1.38629 1.38629
2043 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2044 4 0.15719 3.27118 2.73043 3.16274 4 - -
2045 1.38629 1.38629 1.38629 1.38629
2046 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2047 5 0.15719 3.27118 2.73043 3.16274 5 - -
2048 1.38629 1.38629 1.38629 1.38629
2049 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2050 6 3.30705 0.14631 3.36166 2.73626 6 - -
2051 1.38629 1.38629 1.38629 1.38629
2052 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2053 7 0.15719 3.27118 2.73043 3.16274 7 - -
2054 1.38629 1.38629 1.38629 1.38629
2055 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2056 8 0.15719 3.27118 2.73043 3.16274 8 - -
2057 1.38629 1.38629 1.38629 1.38629
2058 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2059 9 2.86982 3.47591 0.13017 3.36931 9 - -
2060 1.38629 1.38629 1.38629 1.38629
2061 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2062 10 2.86982 3.47591 0.13017 3.36931 10 - -
2063 1.38629 1.38629 1.38629 1.38629
2064 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2065 11 2.97980 2.52563 3.03204 0.19727 11 - -
2066 1.38629 1.38629 1.38629 1.38629
2067 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2068 12 0.15719 3.27118 2.73043 3.16274 12 - -
2069 1.38629 1.38629 1.38629 1.38629
2070 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2071 13 2.86982 3.47591 0.13017 3.36931 13 - -
2072 1.38629 1.38629 1.38629 1.38629
2073 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2074 14 3.30705 0.14631 3.36166 2.73626 14 - -
2075 1.38629 1.38629 1.38629 1.38629
2076 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2077 15 2.97980 2.52563 3.03204 0.19727 15 - -
2078 1.38629 1.38629 1.38629 1.38629
2079 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2080 16 2.86982 3.47591 0.13017 3.36931 16 - -
2081 1.38629 1.38629 1.38629 1.38629
2082 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2083 17 2.97980 2.52563 3.03204 0.19727 17 - -
2084 1.38629 1.38629 1.38629 1.38629
2085 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2086 18 0.15719 3.27118 2.73043 3.16274 18 - -
2087 1.38629 1.38629 1.38629 1.38629
2088 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2089 19 2.86982 3.47591 0.13017 3.36931 19 - -
2090 1.38629 1.38629 1.38629 1.38629
2091 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2092 20 2.86982 3.47591 0.13017 3.36931 20 - -
2093 1.38629 1.38629 1.38629 1.38629
2094 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2095 21 2.97980 2.52563 3.03204 0.19727 21 - -
2096 1.38629 1.38629 1.38629 1.38629
2097 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2098 22 2.86982 3.47591 0.13017 3.36931 22 - -
2099 1.38629 1.38629 1.38629 1.38629
2100 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2101 23 0.15719 3.27118 2.73043 3.16274 23 - -
2102 1.38629 1.38629 1.38629 1.38629
2103 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2104 24 0.15719 3.27118 2.73043 3.16274 24 - -
2105 1.38629 1.38629 1.38629 1.38629
2106 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2107 25 3.30705 0.14631 3.36166 2.73626 25 - -
2108 1.38629 1.38629 1.38629 1.38629
2109 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2110 26 3.30705 0.14631 3.36166 2.73626 26 - -
2111 1.38629 1.38629 1.38629 1.38629
2112 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2113 27 2.97980 2.52563 3.03204 0.19727 27 - -
2114 1.38629 1.38629 1.38629 1.38629
2115 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2116 28 2.86982 3.47591 0.13017 3.36931 28 - -
2117 1.38629 1.38629 1.38629 1.38629
2118 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2119 29 3.30705 0.14631 3.36166 2.73626 29 - -
2120 1.38629 1.38629 1.38629 1.38629
2121 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2122 30 0.15719 3.27118 2.73043 3.16274 30 - -
2123 1.38629 1.38629 1.38629 1.38629
2124 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2125 31 2.86982 3.47591 0.13017 3.36931 31 - -
2126 1.38629 1.38629 1.38629 1.38629
2127 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2128 32 3.30705 0.14631 3.36166 2.73626 32 - -
2129 1.38629 1.38629 1.38629 1.38629
2130 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2131 33 0.15719 3.27118 2.73043 3.16274 33 - -
2132 1.38629 1.38629 1.38629 1.38629
2133 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2134 34 2.86982 3.47591 0.13017 3.36931 34 - -
2135 1.38629 1.38629 1.38629 1.38629
2136 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2137 35 3.30705 0.14631 3.36166 2.73626 35 - -
2138 1.38629 1.38629 1.38629 1.38629
2139 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2140 36 2.97980 2.52563 3.03204 0.19727 36 - -
2141 1.38629 1.38629 1.38629 1.38629
2142 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2143 37 2.86982 3.47591 0.13017 3.36931 37 - -
2144 1.38629 1.38629 1.38629 1.38629
2145 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2146 38 2.86982 3.47591 0.13017 3.36931 38 - -
2147 1.38629 1.38629 1.38629 1.38629
2148 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2149 39 0.15719 3.27118 2.73043 3.16274 39 - -
2150 1.38629 1.38629 1.38629 1.38629
2151 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2152 40 2.97980 2.52563 3.03204 0.19727 40 - -
2153 1.38629 1.38629 1.38629 1.38629
2154 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2155 41 3.30705 0.14631 3.36166 2.73626 41 - -
2156 1.38629 1.38629 1.38629 1.38629
2157 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2158 42 0.15719 3.27118 2.73043 3.16274 42 - -
2159 1.38629 1.38629 1.38629 1.38629
2160 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2161 43 2.97980 2.52563 3.03204 0.19727 43 - -
2162 1.38629 1.38629 1.38629 1.38629
2163 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2164 44 2.97980 2.52563 3.03204 0.19727 44 - -
2165 1.38629 1.38629 1.38629 1.38629
2166 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
2167 45 2.97980 2.52563 3.03204 0.19727 45 - -
2168 1.38629 1.38629 1.38629 1.38629
2169 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
2170 //