Mercurial > repos > okorol > itsx
comparison ITSx_db/HMMs/U.hmm @ 0:f82c70f54bd7 draft
Uploaded
| author | okorol |
|---|---|
| date | Tue, 24 Mar 2015 12:02:48 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:f82c70f54bd7 |
|---|---|
| 1 HMMER3/b [3.0 | March 2010] | |
| 2 NAME 3_End_Eustigmatophyceae_58S_end_long | |
| 3 LENG 45 | |
| 4 ALPH DNA | |
| 5 RF no | |
| 6 CS no | |
| 7 MAP yes | |
| 8 DATE Sun Sep 25 01:39:32 2011 | |
| 9 NSEQ 6 | |
| 10 EFFN 3.336914 | |
| 11 CKSUM 3393550359 | |
| 12 STATS LOCAL MSV -8.0163 0.71932 | |
| 13 STATS LOCAL VITERBI -7.6944 0.71932 | |
| 14 STATS LOCAL FORWARD -4.0151 0.71932 | |
| 15 HMM A C G T | |
| 16 m->m m->i m->d i->m i->i d->m d->d | |
| 17 COMPO 1.93226 1.59605 1.19721 1.04854 | |
| 18 1.38629 1.38629 1.38629 1.38629 | |
| 19 0.03679 4.01402 4.01402 1.46634 0.26236 0.00000 * | |
| 20 1 3.43835 0.12958 3.48758 2.83281 1 - - | |
| 21 1.38629 1.38629 1.38629 1.38629 | |
| 22 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 23 2 2.95070 3.59237 0.11666 3.49752 2 - - | |
| 24 1.38629 1.38629 1.38629 1.38629 | |
| 25 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 26 3 3.43835 0.12958 3.48758 2.83281 3 - - | |
| 27 1.38629 1.38629 1.38629 1.38629 | |
| 28 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 29 4 3.09320 2.59806 3.14118 0.17794 4 - - | |
| 30 1.38629 1.38629 1.38629 1.38629 | |
| 31 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 32 5 3.09320 2.59806 3.14118 0.17794 5 - - | |
| 33 1.38629 1.38629 1.38629 1.38629 | |
| 34 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 35 6 3.09320 2.59806 3.14118 0.17794 6 - - | |
| 36 1.38629 1.38629 1.38629 1.38629 | |
| 37 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 38 7 3.43835 0.12958 3.48758 2.83281 7 - - | |
| 39 1.38629 1.38629 1.38629 1.38629 | |
| 40 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 41 8 2.95070 3.59237 0.11666 3.49752 8 - - | |
| 42 1.38629 1.38629 1.38629 1.38629 | |
| 43 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 44 9 2.95070 3.59237 0.11666 3.49752 9 - - | |
| 45 1.38629 1.38629 1.38629 1.38629 | |
| 46 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 47 10 2.95070 3.59237 0.11666 3.49752 10 - - | |
| 48 1.38629 1.38629 1.38629 1.38629 | |
| 49 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 50 11 0.14130 3.38481 2.80488 3.28690 11 - - | |
| 51 1.38629 1.38629 1.38629 1.38629 | |
| 52 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 53 12 3.09320 2.59806 3.14118 0.17794 12 - - | |
| 54 1.38629 1.38629 1.38629 1.38629 | |
| 55 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 56 13 0.14130 3.38481 2.80488 3.28690 13 - - | |
| 57 1.38629 1.38629 1.38629 1.38629 | |
| 58 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 59 14 3.09320 2.59806 3.14118 0.17794 14 - - | |
| 60 1.38629 1.38629 1.38629 1.38629 | |
| 61 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 62 15 2.95070 3.59237 0.11666 3.49752 15 - - | |
| 63 1.38629 1.38629 1.38629 1.38629 | |
| 64 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 65 16 3.43835 0.12958 3.48758 2.83281 16 - - | |
| 66 1.38629 1.38629 1.38629 1.38629 | |
| 67 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 68 17 3.43835 0.12958 3.48758 2.83281 17 - - | |
| 69 1.38629 1.38629 1.38629 1.38629 | |
| 70 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 71 18 3.43835 0.12958 3.48758 2.83281 18 - - | |
| 72 1.38629 1.38629 1.38629 1.38629 | |
| 73 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 74 19 2.95070 3.59237 0.11666 3.49752 19 - - | |
| 75 1.38629 1.38629 1.38629 1.38629 | |
| 76 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 77 20 3.09320 2.59806 3.14118 0.17794 20 - - | |
| 78 1.38629 1.38629 1.38629 1.38629 | |
| 79 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 80 21 3.09320 2.59806 3.14118 0.17794 21 - - | |
| 81 1.38629 1.38629 1.38629 1.38629 | |
| 82 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 83 22 0.14130 3.38481 2.80488 3.28690 22 - - | |
| 84 1.38629 1.38629 1.38629 1.38629 | |
| 85 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 86 23 2.95070 3.59237 0.11666 3.49752 23 - - | |
| 87 1.38629 1.38629 1.38629 1.38629 | |
| 88 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 89 24 3.43835 0.12958 3.48758 2.83281 24 - - | |
| 90 1.38629 1.38629 1.38629 1.38629 | |
| 91 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 92 25 0.14130 3.38481 2.80488 3.28690 25 - - | |
| 93 1.38629 1.38629 1.38629 1.38629 | |
| 94 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 95 26 3.09320 2.59806 3.14118 0.17794 26 - - | |
| 96 1.38629 1.38629 1.38629 1.38629 | |
| 97 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 98 27 2.95070 3.59237 0.11666 3.49752 27 - - | |
| 99 1.38629 1.38629 1.38629 1.38629 | |
| 100 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 101 28 3.09320 2.59806 3.14118 0.17794 28 - - | |
| 102 1.38629 1.38629 1.38629 1.38629 | |
| 103 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 104 29 3.09320 2.59806 3.14118 0.17794 29 - - | |
| 105 1.38629 1.38629 1.38629 1.38629 | |
| 106 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 107 30 3.09320 2.59806 3.14118 0.17794 30 - - | |
| 108 1.38629 1.38629 1.38629 1.38629 | |
| 109 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 110 31 2.95070 3.59237 0.11666 3.49752 31 - - | |
| 111 1.38629 1.38629 1.38629 1.38629 | |
| 112 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 113 32 3.09320 2.59806 3.14118 0.17794 32 - - | |
| 114 1.38629 1.38629 1.38629 1.38629 | |
| 115 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 116 33 3.09320 2.59806 3.14118 0.17794 33 - - | |
| 117 1.38629 1.38629 1.38629 1.38629 | |
| 118 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 119 34 2.95070 3.59237 0.11666 3.49752 34 - - | |
| 120 1.38629 1.38629 1.38629 1.38629 | |
| 121 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 122 35 2.95070 3.59237 0.11666 3.49752 35 - - | |
| 123 1.38629 1.38629 1.38629 1.38629 | |
| 124 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 125 36 0.14130 3.38481 2.80488 3.28690 36 - - | |
| 126 1.38629 1.38629 1.38629 1.38629 | |
| 127 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 128 37 2.95070 3.59237 0.11666 3.49752 37 - - | |
| 129 1.38629 1.38629 1.38629 1.38629 | |
| 130 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 131 38 3.09320 2.59806 3.14118 0.17794 38 - - | |
| 132 1.38629 1.38629 1.38629 1.38629 | |
| 133 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 134 39 2.95070 3.59237 0.11666 3.49752 39 - - | |
| 135 1.38629 1.38629 1.38629 1.38629 | |
| 136 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 137 40 3.09320 2.59806 3.14118 0.17794 40 - - | |
| 138 1.38629 1.38629 1.38629 1.38629 | |
| 139 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 140 41 3.43835 0.12958 3.48758 2.83281 41 - - | |
| 141 1.38629 1.38629 1.38629 1.38629 | |
| 142 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 143 42 3.09320 2.59806 3.14118 0.17794 42 - - | |
| 144 1.38629 1.38629 1.38629 1.38629 | |
| 145 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 146 43 2.95070 3.59237 0.11666 3.49752 43 - - | |
| 147 1.38629 1.38629 1.38629 1.38629 | |
| 148 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 149 44 3.09320 2.59806 3.14118 0.17794 44 - - | |
| 150 1.38629 1.38629 1.38629 1.38629 | |
| 151 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 | |
| 152 45 3.09320 2.59806 3.14118 0.17794 45 - - | |
| 153 1.38629 1.38629 1.38629 1.38629 | |
| 154 0.01856 3.99580 * 1.46634 0.26236 0.00000 * | |
| 155 // | |
| 156 HMMER3/b [3.0 | March 2010] | |
| 157 NAME 2_5.8_Eustigmatophyceae_58S_start_long | |
| 158 LENG 45 | |
| 159 ALPH DNA | |
| 160 RF no | |
| 161 CS no | |
| 162 MAP yes | |
| 163 DATE Sun Sep 25 01:34:03 2011 | |
| 164 NSEQ 6 | |
| 165 EFFN 3.213867 | |
| 166 CKSUM 1922503689 | |
| 167 STATS LOCAL MSV -8.1335 0.71933 | |
| 168 STATS LOCAL VITERBI -7.6652 0.71933 | |
| 169 STATS LOCAL FORWARD -4.1546 0.71933 | |
| 170 HMM A C G T | |
| 171 m->m m->i m->d i->m i->i d->m d->d | |
| 172 COMPO 1.22065 1.26567 1.52763 1.58055 | |
| 173 1.38629 1.38629 1.38629 1.38629 | |
| 174 0.03764 3.99155 3.99155 1.46634 0.26236 0.00000 * | |
| 175 1 3.39218 0.13520 3.44336 2.79911 1 - - | |
| 176 1.38629 1.38629 1.38629 1.38629 | |
| 177 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 178 2 0.14667 3.34479 2.77882 3.24311 2 - - | |
| 179 1.38629 1.38629 1.38629 1.38629 | |
| 180 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 181 3 0.14667 3.34479 2.77882 3.24311 3 - - | |
| 182 1.38629 1.38629 1.38629 1.38629 | |
| 183 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 184 4 3.39218 0.13520 3.44336 2.79911 4 - - | |
| 185 1.38629 1.38629 1.38629 1.38629 | |
| 186 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 187 5 3.05294 2.57242 3.10245 0.18453 5 - - | |
| 188 1.38629 1.38629 1.38629 1.38629 | |
| 189 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 190 6 3.05294 2.57242 3.10245 0.18453 6 - - | |
| 191 1.38629 1.38629 1.38629 1.38629 | |
| 192 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 193 7 3.05294 2.57242 3.10245 0.18453 7 - - | |
| 194 1.38629 1.38629 1.38629 1.38629 | |
| 195 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 196 8 3.39218 0.13520 3.44336 2.79911 8 - - | |
| 197 1.38629 1.38629 1.38629 1.38629 | |
| 198 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 199 9 0.14667 3.34479 2.77882 3.24311 9 - - | |
| 200 1.38629 1.38629 1.38629 1.38629 | |
| 201 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 202 10 2.92262 3.55163 0.12119 3.45259 10 - - | |
| 203 1.38629 1.38629 1.38629 1.38629 | |
| 204 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 205 11 3.39218 0.13520 3.44336 2.79911 11 - - | |
| 206 1.38629 1.38629 1.38629 1.38629 | |
| 207 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 208 12 0.14667 3.34479 2.77882 3.24311 12 - - | |
| 209 1.38629 1.38629 1.38629 1.38629 | |
| 210 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 211 13 0.14667 3.34479 2.77882 3.24311 13 - - | |
| 212 1.38629 1.38629 1.38629 1.38629 | |
| 213 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 214 14 3.39218 0.13520 3.44336 2.79911 14 - - | |
| 215 1.38629 1.38629 1.38629 1.38629 | |
| 216 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 217 15 2.92262 3.55163 0.12119 3.45259 15 - - | |
| 218 1.38629 1.38629 1.38629 1.38629 | |
| 219 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 220 16 2.92262 3.55163 0.12119 3.45259 16 - - | |
| 221 1.38629 1.38629 1.38629 1.38629 | |
| 222 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 223 17 0.14667 3.34479 2.77882 3.24311 17 - - | |
| 224 1.38629 1.38629 1.38629 1.38629 | |
| 225 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 226 18 3.05294 2.57242 3.10245 0.18453 18 - - | |
| 227 1.38629 1.38629 1.38629 1.38629 | |
| 228 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 229 19 2.92262 3.55163 0.12119 3.45259 19 - - | |
| 230 1.38629 1.38629 1.38629 1.38629 | |
| 231 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 232 20 3.05294 2.57242 3.10245 0.18453 20 - - | |
| 233 1.38629 1.38629 1.38629 1.38629 | |
| 234 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 235 21 3.39218 0.13520 3.44336 2.79911 21 - - | |
| 236 1.38629 1.38629 1.38629 1.38629 | |
| 237 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 238 22 3.05294 2.57242 3.10245 0.18453 22 - - | |
| 239 1.38629 1.38629 1.38629 1.38629 | |
| 240 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 241 23 3.05294 2.57242 3.10245 0.18453 23 - - | |
| 242 1.38629 1.38629 1.38629 1.38629 | |
| 243 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 244 24 2.92262 3.55163 0.12119 3.45259 24 - - | |
| 245 1.38629 1.38629 1.38629 1.38629 | |
| 246 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 247 25 2.92262 3.55163 0.12119 3.45259 25 - - | |
| 248 1.38629 1.38629 1.38629 1.38629 | |
| 249 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 250 26 3.39218 0.13520 3.44336 2.79911 26 - - | |
| 251 1.38629 1.38629 1.38629 1.38629 | |
| 252 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 253 27 3.05294 2.57242 3.10245 0.18453 27 - - | |
| 254 1.38629 1.38629 1.38629 1.38629 | |
| 255 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 256 28 3.39218 0.13520 3.44336 2.79911 28 - - | |
| 257 1.38629 1.38629 1.38629 1.38629 | |
| 258 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 259 29 3.39218 0.13520 3.44336 2.79911 29 - - | |
| 260 1.38629 1.38629 1.38629 1.38629 | |
| 261 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 262 30 3.39218 0.13520 3.44336 2.79911 30 - - | |
| 263 1.38629 1.38629 1.38629 1.38629 | |
| 264 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 265 31 0.14667 3.34479 2.77882 3.24311 31 - - | |
| 266 1.38629 1.38629 1.38629 1.38629 | |
| 267 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 268 32 3.39218 0.13520 3.44336 2.79911 32 - - | |
| 269 1.38629 1.38629 1.38629 1.38629 | |
| 270 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 271 33 0.14667 3.34479 2.77882 3.24311 33 - - | |
| 272 1.38629 1.38629 1.38629 1.38629 | |
| 273 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 274 34 0.14667 3.34479 2.77882 3.24311 34 - - | |
| 275 1.38629 1.38629 1.38629 1.38629 | |
| 276 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 277 35 3.39218 0.13520 3.44336 2.79911 35 - - | |
| 278 1.38629 1.38629 1.38629 1.38629 | |
| 279 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 280 36 2.92262 3.55163 0.12119 3.45259 36 - - | |
| 281 1.38629 1.38629 1.38629 1.38629 | |
| 282 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 283 37 0.14667 3.34479 2.77882 3.24311 37 - - | |
| 284 1.38629 1.38629 1.38629 1.38629 | |
| 285 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 286 38 3.05294 2.57242 3.10245 0.18453 38 - - | |
| 287 1.38629 1.38629 1.38629 1.38629 | |
| 288 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 289 39 2.92262 3.55163 0.12119 3.45259 39 - - | |
| 290 1.38629 1.38629 1.38629 1.38629 | |
| 291 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 292 40 0.14667 3.34479 2.77882 3.24311 40 - - | |
| 293 1.38629 1.38629 1.38629 1.38629 | |
| 294 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 295 41 0.14667 3.34479 2.77882 3.24311 41 - - | |
| 296 1.38629 1.38629 1.38629 1.38629 | |
| 297 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 298 42 2.92262 3.55163 0.12119 3.45259 42 - - | |
| 299 1.38629 1.38629 1.38629 1.38629 | |
| 300 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 301 43 0.14667 3.34479 2.77882 3.24311 43 - - | |
| 302 1.38629 1.38629 1.38629 1.38629 | |
| 303 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 304 44 0.14667 3.34479 2.77882 3.24311 44 - - | |
| 305 1.38629 1.38629 1.38629 1.38629 | |
| 306 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 | |
| 307 45 3.39218 0.13520 3.44336 2.79911 45 - - | |
| 308 1.38629 1.38629 1.38629 1.38629 | |
| 309 0.01900 3.97290 * 1.46634 0.26236 0.00000 * | |
| 310 // | |
| 311 HMMER3/b [3.0 | March 2010] | |
| 312 NAME 4_LSU_Eustigmatophyceae_4_LSU_start_long | |
| 313 LENG 45 | |
| 314 ALPH DNA | |
| 315 RF no | |
| 316 CS no | |
| 317 MAP yes | |
| 318 DATE Sun Sep 25 01:43:21 2011 | |
| 319 NSEQ 5 | |
| 320 EFFN 3.315430 | |
| 321 CKSUM 2420342418 | |
| 322 STATS LOCAL MSV -8.0313 0.71931 | |
| 323 STATS LOCAL VITERBI -7.5738 0.71931 | |
| 324 STATS LOCAL FORWARD -3.9568 0.71931 | |
| 325 HMM A C G T | |
| 326 m->m m->i m->d i->m i->i d->m d->d | |
| 327 COMPO 1.23266 1.26091 1.60118 1.49866 | |
| 328 1.38629 1.38629 1.38629 1.38629 | |
| 329 0.03694 4.01013 4.01013 1.46634 0.26236 0.00000 * | |
| 330 1 3.08626 2.59365 3.13451 0.17906 1 - - | |
| 331 1.38629 1.38629 1.38629 1.38629 | |
| 332 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 333 2 3.08626 2.59365 3.13451 0.17906 2 - - | |
| 334 1.38629 1.38629 1.38629 1.38629 | |
| 335 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 336 3 3.43043 0.13053 3.48000 2.82705 3 - - | |
| 337 1.38629 1.38629 1.38629 1.38629 | |
| 338 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 339 4 2.94591 3.58540 0.11742 3.48982 4 - - | |
| 340 1.38629 1.38629 1.38629 1.38629 | |
| 341 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 342 5 2.94591 3.58540 0.11742 3.48982 5 - - | |
| 343 1.38629 1.38629 1.38629 1.38629 | |
| 344 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 345 6 0.14220 3.37794 2.80041 3.27938 6 - - | |
| 346 1.38629 1.38629 1.38629 1.38629 | |
| 347 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 348 7 3.43043 0.13053 3.48000 2.82705 7 - - | |
| 349 1.38629 1.38629 1.38629 1.38629 | |
| 350 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 351 8 3.43043 0.13053 3.48000 2.82705 8 - - | |
| 352 1.38629 1.38629 1.38629 1.38629 | |
| 353 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 354 9 3.08626 2.59365 3.13451 0.17906 9 - - | |
| 355 1.38629 1.38629 1.38629 1.38629 | |
| 356 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 357 10 3.43043 0.13053 3.48000 2.82705 10 - - | |
| 358 1.38629 1.38629 1.38629 1.38629 | |
| 359 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 360 11 3.43043 0.13053 3.48000 2.82705 11 - - | |
| 361 1.38629 1.38629 1.38629 1.38629 | |
| 362 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 363 12 0.14220 3.37794 2.80041 3.27938 12 - - | |
| 364 1.38629 1.38629 1.38629 1.38629 | |
| 365 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 366 13 0.14220 3.37794 2.80041 3.27938 13 - - | |
| 367 1.38629 1.38629 1.38629 1.38629 | |
| 368 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 369 14 3.08626 2.59365 3.13451 0.17906 14 - - | |
| 370 1.38629 1.38629 1.38629 1.38629 | |
| 371 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 372 15 3.43043 0.13053 3.48000 2.82705 15 - - | |
| 373 1.38629 1.38629 1.38629 1.38629 | |
| 374 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 375 16 0.14220 3.37794 2.80041 3.27938 16 - - | |
| 376 1.38629 1.38629 1.38629 1.38629 | |
| 377 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 378 17 0.14220 3.37794 2.80041 3.27938 17 - - | |
| 379 1.38629 1.38629 1.38629 1.38629 | |
| 380 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 381 18 2.94591 3.58540 0.11742 3.48982 18 - - | |
| 382 1.38629 1.38629 1.38629 1.38629 | |
| 383 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 384 19 3.43043 0.13053 3.48000 2.82705 19 - - | |
| 385 1.38629 1.38629 1.38629 1.38629 | |
| 386 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 387 20 0.14220 3.37794 2.80041 3.27938 20 - - | |
| 388 1.38629 1.38629 1.38629 1.38629 | |
| 389 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 390 21 0.14220 3.37794 2.80041 3.27938 21 - - | |
| 391 1.38629 1.38629 1.38629 1.38629 | |
| 392 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 393 22 2.94591 3.58540 0.11742 3.48982 22 - - | |
| 394 1.38629 1.38629 1.38629 1.38629 | |
| 395 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 396 23 2.94591 3.58540 0.11742 3.48982 23 - - | |
| 397 1.38629 1.38629 1.38629 1.38629 | |
| 398 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 399 24 3.43043 0.13053 3.48000 2.82705 24 - - | |
| 400 1.38629 1.38629 1.38629 1.38629 | |
| 401 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 402 25 3.08626 2.59365 3.13451 0.17906 25 - - | |
| 403 1.38629 1.38629 1.38629 1.38629 | |
| 404 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 405 26 0.14220 3.37794 2.80041 3.27938 26 - - | |
| 406 1.38629 1.38629 1.38629 1.38629 | |
| 407 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 408 27 3.43043 0.13053 3.48000 2.82705 27 - - | |
| 409 1.38629 1.38629 1.38629 1.38629 | |
| 410 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 411 28 3.43043 0.13053 3.48000 2.82705 28 - - | |
| 412 1.38629 1.38629 1.38629 1.38629 | |
| 413 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 414 29 3.43043 0.13053 3.48000 2.82705 29 - - | |
| 415 1.38629 1.38629 1.38629 1.38629 | |
| 416 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 417 30 2.94591 3.58540 0.11742 3.48982 30 - - | |
| 418 1.38629 1.38629 1.38629 1.38629 | |
| 419 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 420 31 3.43043 0.13053 3.48000 2.82705 31 - - | |
| 421 1.38629 1.38629 1.38629 1.38629 | |
| 422 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 423 32 3.08626 2.59365 3.13451 0.17906 32 - - | |
| 424 1.38629 1.38629 1.38629 1.38629 | |
| 425 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 426 33 2.94591 3.58540 0.11742 3.48982 33 - - | |
| 427 1.38629 1.38629 1.38629 1.38629 | |
| 428 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 429 34 0.33543 2.85734 1.81858 2.72885 34 - - | |
| 430 1.38629 1.38629 1.38629 1.38629 | |
| 431 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 432 35 0.14220 3.37794 2.80041 3.27938 35 - - | |
| 433 1.38629 1.38629 1.38629 1.38629 | |
| 434 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 435 36 3.08626 2.59365 3.13451 0.17906 36 - - | |
| 436 1.38629 1.38629 1.38629 1.38629 | |
| 437 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 438 37 3.08626 2.59365 3.13451 0.17906 37 - - | |
| 439 1.38629 1.38629 1.38629 1.38629 | |
| 440 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 441 38 3.08626 2.59365 3.13451 0.17906 38 - - | |
| 442 1.38629 1.38629 1.38629 1.38629 | |
| 443 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 444 39 0.14220 3.37794 2.80041 3.27938 39 - - | |
| 445 1.38629 1.38629 1.38629 1.38629 | |
| 446 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 447 40 0.14220 3.37794 2.80041 3.27938 40 - - | |
| 448 1.38629 1.38629 1.38629 1.38629 | |
| 449 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 450 41 2.94591 3.58540 0.11742 3.48982 41 - - | |
| 451 1.38629 1.38629 1.38629 1.38629 | |
| 452 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 453 42 3.43043 0.13053 3.48000 2.82705 42 - - | |
| 454 1.38629 1.38629 1.38629 1.38629 | |
| 455 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 456 43 0.14220 3.37794 2.80041 3.27938 43 - - | |
| 457 1.38629 1.38629 1.38629 1.38629 | |
| 458 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 459 44 3.08626 2.59365 3.13451 0.17906 44 - - | |
| 460 1.38629 1.38629 1.38629 1.38629 | |
| 461 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 | |
| 462 45 0.14220 3.37794 2.80041 3.27938 45 - - | |
| 463 1.38629 1.38629 1.38629 1.38629 | |
| 464 0.01864 3.99184 * 1.46634 0.26236 0.00000 * | |
| 465 // | |
| 466 HMMER3/b [3.0 | March 2010] | |
| 467 NAME 1_SSU_Eustigmatophyceae_1_SSU_end_long | |
| 468 LENG 45 | |
| 469 ALPH DNA | |
| 470 RF no | |
| 471 CS no | |
| 472 MAP yes | |
| 473 DATE Thu Jan 19 22:34:10 2012 | |
| 474 NSEQ 6 | |
| 475 EFFN 3.225586 | |
| 476 CKSUM 778367950 | |
| 477 STATS LOCAL MSV -8.0048 0.71933 | |
| 478 STATS LOCAL VITERBI -7.6831 0.71933 | |
| 479 STATS LOCAL FORWARD -4.1090 0.71933 | |
| 480 HMM A C G T | |
| 481 m->m m->i m->d i->m i->i d->m d->d | |
| 482 COMPO 1.27189 1.62645 1.24659 1.44567 | |
| 483 1.38629 1.38629 1.38629 1.38629 | |
| 484 0.03756 3.99371 3.99371 1.46634 0.26236 0.00000 * | |
| 485 1 0.14614 3.34867 2.78135 3.24736 1 - - | |
| 486 1.38629 1.38629 1.38629 1.38629 | |
| 487 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 488 2 2.92536 3.55560 0.12074 3.45696 2 - - | |
| 489 1.38629 1.38629 1.38629 1.38629 | |
| 490 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 491 3 3.05683 2.57491 3.10619 0.18389 3 - - | |
| 492 1.38629 1.38629 1.38629 1.38629 | |
| 493 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 494 4 3.39667 0.13464 3.44765 2.80239 4 - - | |
| 495 1.38629 1.38629 1.38629 1.38629 | |
| 496 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 497 5 2.92536 3.55560 0.12074 3.45696 5 - - | |
| 498 1.38629 1.38629 1.38629 1.38629 | |
| 499 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 500 6 3.05683 2.57491 3.10619 0.18389 6 - - | |
| 501 1.38629 1.38629 1.38629 1.38629 | |
| 502 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 503 7 0.14614 3.34867 2.78135 3.24736 7 - - | |
| 504 1.38629 1.38629 1.38629 1.38629 | |
| 505 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 506 8 0.14614 3.34867 2.78135 3.24736 8 - - | |
| 507 1.38629 1.38629 1.38629 1.38629 | |
| 508 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 509 9 3.39667 0.13464 3.44765 2.80239 9 - - | |
| 510 1.38629 1.38629 1.38629 1.38629 | |
| 511 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 512 10 0.14614 3.34867 2.78135 3.24736 10 - - | |
| 513 1.38629 1.38629 1.38629 1.38629 | |
| 514 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 515 11 0.14614 3.34867 2.78135 3.24736 11 - - | |
| 516 1.38629 1.38629 1.38629 1.38629 | |
| 517 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 518 12 2.92536 3.55560 0.12074 3.45696 12 - - | |
| 519 1.38629 1.38629 1.38629 1.38629 | |
| 520 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 521 13 2.92536 3.55560 0.12074 3.45696 13 - - | |
| 522 1.38629 1.38629 1.38629 1.38629 | |
| 523 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 524 14 3.05683 2.57491 3.10619 0.18389 14 - - | |
| 525 1.38629 1.38629 1.38629 1.38629 | |
| 526 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 527 15 3.05683 2.57491 3.10619 0.18389 15 - - | |
| 528 1.38629 1.38629 1.38629 1.38629 | |
| 529 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 530 16 3.05683 2.57491 3.10619 0.18389 16 - - | |
| 531 1.38629 1.38629 1.38629 1.38629 | |
| 532 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 533 17 3.39667 0.13464 3.44765 2.80239 17 - - | |
| 534 1.38629 1.38629 1.38629 1.38629 | |
| 535 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 536 18 3.39667 0.13464 3.44765 2.80239 18 - - | |
| 537 1.38629 1.38629 1.38629 1.38629 | |
| 538 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 539 19 2.92536 3.55560 0.12074 3.45696 19 - - | |
| 540 1.38629 1.38629 1.38629 1.38629 | |
| 541 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 542 20 3.05683 2.57491 3.10619 0.18389 20 - - | |
| 543 1.38629 1.38629 1.38629 1.38629 | |
| 544 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 545 21 0.14614 3.34867 2.78135 3.24736 21 - - | |
| 546 1.38629 1.38629 1.38629 1.38629 | |
| 547 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 548 22 2.92536 3.55560 0.12074 3.45696 22 - - | |
| 549 1.38629 1.38629 1.38629 1.38629 | |
| 550 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 551 23 2.92536 3.55560 0.12074 3.45696 23 - - | |
| 552 1.38629 1.38629 1.38629 1.38629 | |
| 553 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 554 24 3.05683 2.57491 3.10619 0.18389 24 - - | |
| 555 1.38629 1.38629 1.38629 1.38629 | |
| 556 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 557 25 2.92536 3.55560 0.12074 3.45696 25 - - | |
| 558 1.38629 1.38629 1.38629 1.38629 | |
| 559 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 560 26 0.14614 3.34867 2.78135 3.24736 26 - - | |
| 561 1.38629 1.38629 1.38629 1.38629 | |
| 562 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 563 27 0.14614 3.34867 2.78135 3.24736 27 - - | |
| 564 1.38629 1.38629 1.38629 1.38629 | |
| 565 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 566 28 3.39667 0.13464 3.44765 2.80239 28 - - | |
| 567 1.38629 1.38629 1.38629 1.38629 | |
| 568 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 569 29 3.39667 0.13464 3.44765 2.80239 29 - - | |
| 570 1.38629 1.38629 1.38629 1.38629 | |
| 571 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 572 30 3.05683 2.57491 3.10619 0.18389 30 - - | |
| 573 1.38629 1.38629 1.38629 1.38629 | |
| 574 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 575 31 2.92536 3.55560 0.12074 3.45696 31 - - | |
| 576 1.38629 1.38629 1.38629 1.38629 | |
| 577 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 578 32 3.39667 0.13464 3.44765 2.80239 32 - - | |
| 579 1.38629 1.38629 1.38629 1.38629 | |
| 580 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 581 33 2.92536 3.55560 0.12074 3.45696 33 - - | |
| 582 1.38629 1.38629 1.38629 1.38629 | |
| 583 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 584 34 2.92536 3.55560 0.12074 3.45696 34 - - | |
| 585 1.38629 1.38629 1.38629 1.38629 | |
| 586 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 587 35 0.14614 3.34867 2.78135 3.24736 35 - - | |
| 588 1.38629 1.38629 1.38629 1.38629 | |
| 589 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 590 36 0.14614 3.34867 2.78135 3.24736 36 - - | |
| 591 1.38629 1.38629 1.38629 1.38629 | |
| 592 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 593 37 2.92536 3.55560 0.12074 3.45696 37 - - | |
| 594 1.38629 1.38629 1.38629 1.38629 | |
| 595 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 596 38 2.92536 3.55560 0.12074 3.45696 38 - - | |
| 597 1.38629 1.38629 1.38629 1.38629 | |
| 598 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 599 39 0.14614 3.34867 2.78135 3.24736 39 - - | |
| 600 1.38629 1.38629 1.38629 1.38629 | |
| 601 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 602 40 3.05683 2.57491 3.10619 0.18389 40 - - | |
| 603 1.38629 1.38629 1.38629 1.38629 | |
| 604 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 605 41 3.39667 0.13464 3.44765 2.80239 41 - - | |
| 606 1.38629 1.38629 1.38629 1.38629 | |
| 607 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 608 42 0.14614 3.34867 2.78135 3.24736 42 - - | |
| 609 1.38629 1.38629 1.38629 1.38629 | |
| 610 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 611 43 3.05683 2.57491 3.10619 0.18389 43 - - | |
| 612 1.38629 1.38629 1.38629 1.38629 | |
| 613 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 614 44 3.05683 2.57491 3.10619 0.18389 44 - - | |
| 615 1.38629 1.38629 1.38629 1.38629 | |
| 616 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 | |
| 617 45 0.14614 3.34867 2.78135 3.24736 45 - - | |
| 618 1.38629 1.38629 1.38629 1.38629 | |
| 619 0.01896 3.97511 * 1.46634 0.26236 0.00000 * | |
| 620 // |