Mercurial > repos > okorol > itsx
diff ITSx_db/HMMs/I.hmm @ 0:f82c70f54bd7 draft
Uploaded
| author | okorol |
|---|---|
| date | Tue, 24 Mar 2015 12:02:48 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ITSx_db/HMMs/I.hmm Tue Mar 24 12:02:48 2015 -0400 @@ -0,0 +1,775 @@ +HMMER3/b [3.0 | March 2010] +NAME 3_End_Phaeophyceae_58S_end_one_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Fri Jan 20 12:12:36 2012 +NSEQ 157 +EFFN 3.732391 +CKSUM 82106143 +STATS LOCAL MSV -6.9907 0.71931 +STATS LOCAL VITERBI -7.6013 0.71931 +STATS LOCAL FORWARD -3.9860 0.71931 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.91751 1.41520 1.11917 1.26019 + 1.38629 1.38629 1.38629 1.38629 + 0.03429 4.08301 4.08301 1.46634 0.26236 0.00000 * + 1 3.57378 0.11461 3.61706 2.93034 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 + 2 3.03127 3.71067 0.10455 3.62844 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 + 3 3.57378 0.11461 3.61706 2.93034 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 + 4 3.21417 2.67481 3.25746 0.15969 4 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 + 5 3.21417 2.67481 3.25746 0.15969 5 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 + 6 3.57378 0.11461 3.61706 2.93034 6 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 + 7 3.57378 0.11461 3.61706 2.93034 7 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 + 8 3.03127 3.71067 0.10455 3.62844 8 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 + 9 3.03127 3.71067 0.10455 3.62844 9 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 + 10 3.03127 3.71067 0.10455 3.62844 10 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04253 4.08301 3.69765 1.46634 0.26236 1.09861 0.40547 + 11 0.15619 3.32897 2.80495 3.03107 11 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03457 4.07506 4.07506 1.46634 0.26236 0.85884 0.55105 + 12 1.83744 2.35418 2.56143 0.40256 12 - 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- + 1.38629 1.38629 1.38629 1.38629 + 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 + 45 2.90903 2.47911 3.09147 0.20307 45 - - + 1.38629 1.38629 1.38629 1.38629 + 0.01729 4.06601 * 1.46634 0.26236 0.00000 * +// +HMMER3/b [3.0 | March 2010] +NAME 3_End_Phaeophyceae_58S_end_two_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Sun Oct 9 00:13:57 2011 +NSEQ 4 +EFFN 3.082031 +CKSUM 3550826365 +STATS LOCAL MSV -8.1048 0.71931 +STATS LOCAL VITERBI -7.8658 0.71931 +STATS LOCAL FORWARD -3.8411 0.71931 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.71271 1.47634 0.90619 1.67615 + 1.38629 1.38629 1.38629 1.38629 + 0.03860 3.96690 3.96690 1.46634 0.26236 0.00000 * + 1 3.34045 0.14183 3.39374 2.76103 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 + 2 2.89070 3.50572 0.12655 3.40205 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 + 3 3.34045 0.14183 3.39374 2.76103 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 + 4 3.00834 2.54393 3.05952 0.19218 4 - 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- + 1.38629 1.38629 1.38629 1.38629 + 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 + 45 2.89070 3.50572 0.12655 3.40205 45 - - + 1.38629 1.38629 1.38629 1.38629 + 0.01949 3.94778 * 1.46634 0.26236 0.00000 * +// +HMMER3/b [3.0 | March 2010] +NAME 2_5.8_Phaeophyceae_58S_start_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Sun Oct 9 00:07:52 2011 +NSEQ 172 +EFFN 3.414490 +CKSUM 3324807830 +STATS LOCAL MSV -7.5493 0.71932 +STATS LOCAL VITERBI -7.7980 0.71932 +STATS LOCAL FORWARD -4.1200 0.71932 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.23334 1.32585 1.45069 1.56687 + 1.38629 1.38629 1.38629 1.38629 + 0.03627 4.02794 4.02794 1.46634 0.26236 0.00000 * + 1 0.13813 3.40921 2.82069 3.31363 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 + 2 0.13813 3.40921 2.82069 3.31363 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 + 3 0.13813 3.40921 2.82069 3.31363 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03957 4.02794 3.86405 1.46634 0.26236 1.09861 0.40547 + 4 3.46006 0.12704 3.50837 2.84857 4 - 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