Mercurial > repos > okorol > itsx
diff ITSx_db/HMMs/L.hmm @ 0:f82c70f54bd7 draft
Uploaded
| author | okorol |
|---|---|
| date | Tue, 24 Mar 2015 12:02:48 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ITSx_db/HMMs/L.hmm Tue Mar 24 12:02:48 2015 -0400 @@ -0,0 +1,6045 @@ +HMMER3/b [3.0 | March 2010] +NAME 3_End_Marchantiophyta_58S_end_foura_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Wed Jan 25 17:48:18 2012 +NSEQ 4 +EFFN 3.089844 +CKSUM 3677159024 +STATS LOCAL MSV -8.1113 0.71933 +STATS LOCAL VITERBI -7.8119 0.71933 +STATS LOCAL FORWARD -3.9220 0.71933 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.72586 1.10743 1.14821 1.74657 + 1.38629 1.38629 1.38629 1.38629 + 0.03854 3.96837 3.96837 1.46634 0.26236 0.00000 * + 1 3.34359 0.14142 3.39674 2.76335 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547 + 2 2.89265 3.50850 0.12621 3.40512 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547 + 3 3.34359 0.14142 3.39674 2.76335 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547 + 4 3.34359 0.14142 3.39674 2.76335 4 - 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- + 1.38629 1.38629 1.38629 1.38629 + 0.03854 3.96837 3.96837 1.46634 0.26236 1.09861 0.40547 + 45 2.89265 3.50850 0.12621 3.40512 45 - - + 1.38629 1.38629 1.38629 1.38629 + 0.01946 3.94929 * 1.46634 0.26236 0.00000 * +// +HMMER3/b [3.0 | March 2010] +NAME 3_End_Marchantiophyta_58S_end_fourb_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Wed Jan 25 17:48:24 2012 +NSEQ 2 +EFFN 2.000000 +CKSUM 131491290 +STATS LOCAL MSV -7.4968 0.72757 +STATS LOCAL VITERBI -8.3707 0.72757 +STATS LOCAL FORWARD -3.7471 0.72757 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.66684 1.23957 1.21839 1.48748 + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * + 1 2.81865 0.23582 2.88868 2.35662 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 2 2.53331 3.02441 0.20344 2.88069 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 3 2.81865 0.23582 2.88868 2.35662 3 - 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- + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 44 2.57915 2.25909 2.64442 0.28946 44 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 45 2.53331 3.02441 0.20344 2.88069 45 - - + 1.38629 1.38629 1.38629 1.38629 + 0.02469 3.71357 * 1.46634 0.26236 0.00000 * +// +HMMER3/b [3.0 | March 2010] +NAME 3_End_Marchantiophyta_58S_end_fourc_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Wed Jan 25 17:48:31 2012 +NSEQ 3 +EFFN 3.000000 +CKSUM 1848225497 +STATS LOCAL MSV -8.1659 0.71999 +STATS LOCAL VITERBI -7.8126 0.71999 +STATS LOCAL FORWARD -4.1112 0.71999 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.72006 1.20903 1.20251 1.50499 + 1.38629 1.38629 1.38629 1.38629 + 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * + 1 3.30705 0.14631 3.36166 2.73626 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 + 2 2.86982 3.47591 0.13017 3.36931 2 - 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