Mercurial > repos > okorol > itsx
diff ITSx_db/HMMs/S.hmm @ 0:f82c70f54bd7 draft
Uploaded
| author | okorol |
|---|---|
| date | Tue, 24 Mar 2015 12:02:48 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ITSx_db/HMMs/S.hmm Tue Mar 24 12:02:48 2015 -0400 @@ -0,0 +1,1240 @@ +HMMER3/b [3.0 | March 2010] +NAME 3_End_Synurophyceae_58S_end_one_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Thu Jan 19 22:10:37 2012 +NSEQ 114 +EFFN 3.336365 +CKSUM 556246054 +STATS LOCAL MSV -7.9476 0.71931 +STATS LOCAL VITERBI -7.6935 0.71931 +STATS LOCAL FORWARD -4.0189 0.71931 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.82422 1.38641 1.25673 1.19039 + 1.38629 1.38629 1.38629 1.38629 + 0.03679 4.01392 4.01392 1.46634 0.26236 0.00000 * + 1 3.43814 0.12961 3.48739 2.83266 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 + 2 2.95057 3.59219 0.11668 3.49732 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 + 3 3.43814 0.12961 3.48739 2.83266 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 + 4 0.14132 3.38463 2.80476 3.28671 4 - 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- + 1.38629 1.38629 1.38629 1.38629 + 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 + 45 0.14132 3.38463 2.80476 3.28671 45 - - + 1.38629 1.38629 1.38629 1.38629 + 0.01857 3.99570 * 1.46634 0.26236 0.00000 * +// +HMMER3/b [3.0 | March 2010] +NAME 3_End_Synurophyceae_58S_end_three_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Thu Jan 19 22:10:46 2012 +NSEQ 2 +EFFN 2.000000 +CKSUM 592956816 +STATS LOCAL MSV -7.3746 0.72844 +STATS LOCAL VITERBI -8.4013 0.72844 +STATS LOCAL FORWARD -3.5118 0.72844 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.66005 1.44051 1.32058 1.18390 + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * + 1 2.81865 0.23582 2.88868 2.35662 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 2 2.53331 3.02441 0.20344 2.88069 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 3 2.81865 0.23582 2.88868 2.35662 3 - 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- + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 44 2.57915 2.25909 2.64442 0.28946 44 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 45 0.23862 2.84929 2.43386 2.70756 45 - - + 1.38629 1.38629 1.38629 1.38629 + 0.02469 3.71357 * 1.46634 0.26236 0.00000 * +// +HMMER3/b [3.0 | March 2010] +NAME 3_End_Synurophyceae_58S_end_two_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Mon Jan 16 13:02:58 2012 +NSEQ 2 +EFFN 2.000000 +CKSUM 593723470 +STATS LOCAL MSV -7.4782 0.72836 +STATS LOCAL VITERBI -8.3072 0.72836 +STATS LOCAL FORWARD -3.3799 0.72836 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.65518 1.50641 1.26646 1.18610 + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * + 1 2.81865 0.23582 2.88868 2.35662 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 2 0.23862 2.84929 2.43386 2.70756 2 - 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