Mercurial > repos > okorol > itsx
view ITSx_db/HMMs/T.hmm @ 4:2986d8c4db11 draft
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| author | okorol |
|---|---|
| date | Thu, 04 Jun 2015 12:05:10 -0400 |
| parents | f82c70f54bd7 |
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HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_eight_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:57:06 2012 NSEQ 662 EFFN 4.649132 CKSUM 878970887 STATS LOCAL MSV -6.9557 0.71932 STATS LOCAL VITERBI -7.5350 0.71932 STATS LOCAL FORWARD -3.7755 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.86570 1.07040 1.08935 1.79633 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 0.00000 * 1 3.17620 3.92530 0.08600 3.86688 1 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 2 3.82361 0.09186 3.85519 3.10671 2 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 3 3.82361 0.09186 3.85519 3.10671 3 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 4 3.57901 0.14044 3.62229 2.57183 4 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 5 1.93587 1.39029 0.83718 1.75004 5 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 6 0.10359 3.72520 3.02434 3.66086 6 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 7 0.19844 3.34834 2.27973 3.15742 7 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 8 3.17620 3.92530 0.08600 3.86688 8 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 9 3.82361 0.09186 3.85519 3.10671 9 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 10 3.77465 0.10089 3.80859 2.97902 10 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 11 0.84316 2.18097 1.68775 1.30274 11 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 12 3.24031 2.25577 3.28501 0.20014 12 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 13 2.81050 1.42383 2.87304 0.44238 13 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 14 1.22032 1.28525 1.91165 1.27137 14 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 15 3.17620 3.92530 0.08600 3.86688 15 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 16 3.17620 3.92530 0.08600 3.86688 16 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 17 3.55653 0.14545 3.60081 2.53166 17 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 18 3.35052 0.19783 3.40305 2.19688 18 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 19 2.73063 3.76185 0.12042 3.68745 19 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 20 0.10359 3.72520 3.02434 3.66086 20 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 21 2.82567 3.80301 0.11149 3.73280 21 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 22 3.17620 3.92530 0.08600 3.86688 22 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 23 3.17620 3.92530 0.08600 3.86688 23 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 24 3.82361 0.09186 3.85519 3.10671 24 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 25 0.10359 3.72520 3.02434 3.66086 25 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 26 3.76501 0.10270 3.79943 2.95555 26 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 27 3.06878 3.83900 0.09883 3.64534 27 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 28 2.75612 1.31587 2.82056 0.49651 28 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 29 3.70999 0.11326 3.74712 2.82995 29 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 30 3.45156 2.82621 3.48548 0.12962 30 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 31 3.17620 3.92530 0.08600 3.86688 31 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 32 3.82361 0.09186 3.85519 3.10671 32 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 33 3.82361 0.09186 3.85519 3.10671 33 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 34 3.45156 2.82621 3.48548 0.12962 34 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 35 3.17620 3.92530 0.08600 3.86688 35 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 36 3.14070 3.84248 0.09662 3.59684 36 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 37 3.17620 3.92530 0.08600 3.86688 37 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 38 2.65366 0.70233 2.72331 0.99826 38 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 39 3.17620 3.92530 0.08600 3.86688 39 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 40 3.45156 2.82621 3.48548 0.12962 40 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 41 3.77814 0.10024 3.81192 2.98765 41 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 42 0.12107 3.61002 2.98028 3.31865 42 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 43 3.76361 0.10296 3.79809 2.95218 43 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 44 2.62684 3.71265 0.13142 3.63335 44 - - 1.38629 1.38629 1.38629 1.38629 0.02964 4.22671 4.22671 1.46634 0.26236 1.09861 0.40547 45 3.21513 0.24087 3.27225 1.99521 45 - - 1.38629 1.38629 1.38629 1.38629 0.01493 4.21200 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_eighteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:01:50 2012 NSEQ 32 EFFN 3.222656 CKSUM 2873994334 STATS LOCAL MSV -8.1370 0.71932 STATS LOCAL VITERBI -7.7175 0.71932 STATS LOCAL FORWARD -3.4978 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72186 1.05600 1.08934 1.98789 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 0.00000 * 1 2.92467 3.55461 0.12085 3.45586 1 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 2 3.39555 0.13478 3.44658 2.80157 2 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 3 3.39555 0.13478 3.44658 2.80157 3 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 4 3.39555 0.13478 3.44658 2.80157 4 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 5 2.92467 3.55461 0.12085 3.45586 5 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 6 0.14627 3.34770 2.78072 3.24630 6 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 7 2.92467 3.55461 0.12085 3.45586 7 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 8 2.92467 3.55461 0.12085 3.45586 8 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 9 3.39555 0.13478 3.44658 2.80157 9 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 10 3.39555 0.13478 3.44658 2.80157 10 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 11 0.14627 3.34770 2.78072 3.24630 11 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 12 3.39555 0.13478 3.44658 2.80157 12 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 13 3.05586 2.57429 3.10526 0.18405 13 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 14 0.14627 3.34770 2.78072 3.24630 14 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 15 2.92467 3.55461 0.12085 3.45586 15 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 16 2.92467 3.55461 0.12085 3.45586 16 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 17 3.02608 0.23379 3.08751 2.16846 17 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 18 2.40395 1.10046 2.47543 0.70766 18 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 19 2.92467 3.55461 0.12085 3.45586 19 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 20 0.14627 3.34770 2.78072 3.24630 20 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 21 2.92467 3.55461 0.12085 3.45586 21 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 22 2.92467 3.55461 0.12085 3.45586 22 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 23 2.92467 3.55461 0.12085 3.45586 23 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 24 3.39555 0.13478 3.44658 2.80157 24 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 25 0.14627 3.34770 2.78072 3.24630 25 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 26 3.39555 0.13478 3.44658 2.80157 26 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 27 2.92467 3.55461 0.12085 3.45586 27 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 28 2.92668 0.27091 2.99060 2.01381 28 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 29 3.39555 0.13478 3.44658 2.80157 29 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 30 3.05586 2.57429 3.10526 0.18405 30 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 31 2.92467 3.55461 0.12085 3.45586 31 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 32 3.39555 0.13478 3.44658 2.80157 32 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 33 3.39555 0.13478 3.44658 2.80157 33 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 34 3.05586 2.57429 3.10526 0.18405 34 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 35 2.92467 3.55461 0.12085 3.45586 35 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 36 2.92467 3.55461 0.12085 3.45586 36 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 37 2.92467 3.55461 0.12085 3.45586 37 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 38 3.39555 0.13478 3.44658 2.80157 38 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 39 2.92467 3.55461 0.12085 3.45586 39 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 40 3.05586 2.57429 3.10526 0.18405 40 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 41 3.39555 0.13478 3.44658 2.80157 41 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 42 0.14627 3.34770 2.78072 3.24630 42 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 43 3.39555 0.13478 3.44658 2.80157 43 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 44 0.14627 3.34770 2.78072 3.24630 44 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 45 3.39555 0.13478 3.44658 2.80157 45 - - 1.38629 1.38629 1.38629 1.38629 0.01897 3.97456 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_eleven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:57:45 2012 NSEQ 17 EFFN 3.141846 CKSUM 144042220 STATS LOCAL MSV -8.0334 0.71931 STATS LOCAL VITERBI -7.6576 0.71931 STATS LOCAL FORWARD -3.7404 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.93155 1.06659 1.09552 1.73426 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 0.00000 * 1 2.90543 3.52685 0.12405 3.42529 1 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 2 3.36422 0.13874 3.41654 2.77857 2 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 3 3.36422 0.13874 3.41654 2.77857 3 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 4 3.36422 0.13874 3.41654 2.77857 4 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 5 2.90543 3.52685 0.12405 3.42529 5 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 6 0.15004 3.32058 2.76298 3.21666 6 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 7 3.36422 0.13874 3.41654 2.77857 7 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 8 2.90543 3.52685 0.12405 3.42529 8 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 9 3.36422 0.13874 3.41654 2.77857 9 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 10 3.36422 0.13874 3.41654 2.77857 10 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 11 0.15004 3.32058 2.76298 3.21666 11 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 12 3.02876 2.55699 3.07919 0.18863 12 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 13 3.02876 2.55699 3.07919 0.18863 13 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 14 3.36422 0.13874 3.41654 2.77857 14 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 15 2.90543 3.52685 0.12405 3.42529 15 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 16 2.90543 3.52685 0.12405 3.42529 16 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 17 2.75581 0.34631 2.82349 1.77343 17 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 18 3.36422 0.13874 3.41654 2.77857 18 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 19 2.90543 3.52685 0.12405 3.42529 19 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 20 0.15004 3.32058 2.76298 3.21666 20 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 21 2.90543 3.52685 0.12405 3.42529 21 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 22 2.90543 3.52685 0.12405 3.42529 22 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 23 2.90543 3.52685 0.12405 3.42529 23 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 24 3.36422 0.13874 3.41654 2.77857 24 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 25 0.15004 3.32058 2.76298 3.21666 25 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 26 3.36422 0.13874 3.41654 2.77857 26 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 27 2.90543 3.52685 0.12405 3.42529 27 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 28 3.02876 2.55699 3.07919 0.18863 28 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 29 3.36422 0.13874 3.41654 2.77857 29 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 30 3.02876 2.55699 3.07919 0.18863 30 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 31 2.90543 3.52685 0.12405 3.42529 31 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 32 3.36422 0.13874 3.41654 2.77857 32 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 33 3.36422 0.13874 3.41654 2.77857 33 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 34 3.02876 2.55699 3.07919 0.18863 34 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 35 2.90543 3.52685 0.12405 3.42529 35 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 36 2.90543 3.52685 0.12405 3.42529 36 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 37 2.90543 3.52685 0.12405 3.42529 37 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 38 3.02876 2.55699 3.07919 0.18863 38 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 39 2.90543 3.52685 0.12405 3.42529 39 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 40 3.02876 2.55699 3.07919 0.18863 40 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 41 3.36422 0.13874 3.41654 2.77857 41 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 42 0.15004 3.32058 2.76298 3.21666 42 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 43 3.36422 0.13874 3.41654 2.77857 43 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 44 2.90543 3.52685 0.12405 3.42529 44 - - 1.38629 1.38629 1.38629 1.38629 0.03816 3.97816 3.97816 1.46634 0.26236 1.09861 0.40547 45 3.36422 0.13874 3.41654 2.77857 45 - - 1.38629 1.38629 1.38629 1.38629 0.01926 3.95926 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fifteena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:59:06 2012 NSEQ 8 EFFN 3.105469 CKSUM 803603558 STATS LOCAL MSV -8.1846 0.71931 STATS LOCAL VITERBI -7.7807 0.71931 STATS LOCAL FORWARD -4.0577 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.55243 1.21735 1.14333 1.75159 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 0.00000 * 1 2.89652 3.51406 0.12555 3.41122 1 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 2 3.34983 0.14060 3.40273 2.76795 2 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 3 3.34983 0.14060 3.40273 2.76795 3 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 4 3.01638 2.54908 3.06726 0.19077 4 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 5 2.89652 3.51406 0.12555 3.41122 5 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 6 0.15180 3.30814 2.75481 3.20307 6 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 7 0.15180 3.30814 2.75481 3.20307 7 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 8 2.89652 3.51406 0.12555 3.41122 8 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 9 3.34983 0.14060 3.40273 2.76795 9 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 10 3.34983 0.14060 3.40273 2.76795 10 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 11 0.15180 3.30814 2.75481 3.20307 11 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 12 3.01638 2.54908 3.06726 0.19077 12 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 13 3.34983 0.14060 3.40273 2.76795 13 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 14 0.15180 3.30814 2.75481 3.20307 14 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 15 2.89652 3.51406 0.12555 3.41122 15 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 16 2.89652 3.51406 0.12555 3.41122 16 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 17 3.34983 0.14060 3.40273 2.76795 17 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 18 3.01638 2.54908 3.06726 0.19077 18 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 19 2.89652 3.51406 0.12555 3.41122 19 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 20 0.15180 3.30814 2.75481 3.20307 20 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 21 2.89652 3.51406 0.12555 3.41122 21 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 22 2.89652 3.51406 0.12555 3.41122 22 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 23 2.89652 3.51406 0.12555 3.41122 23 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 24 3.34983 0.14060 3.40273 2.76795 24 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 25 0.15180 3.30814 2.75481 3.20307 25 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 26 3.34983 0.14060 3.40273 2.76795 26 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 27 2.89652 3.51406 0.12555 3.41122 27 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 28 3.01638 2.54908 3.06726 0.19077 28 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 29 3.34983 0.14060 3.40273 2.76795 29 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 30 3.01638 2.54908 3.06726 0.19077 30 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 31 2.89652 3.51406 0.12555 3.41122 31 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 32 3.34983 0.14060 3.40273 2.76795 32 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 33 3.34983 0.14060 3.40273 2.76795 33 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 34 3.01638 2.54908 3.06726 0.19077 34 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 35 2.89652 3.51406 0.12555 3.41122 35 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 36 2.89652 3.51406 0.12555 3.41122 36 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 37 2.89652 3.51406 0.12555 3.41122 37 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 38 3.34983 0.14060 3.40273 2.76795 38 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 39 2.89652 3.51406 0.12555 3.41122 39 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 40 3.01638 2.54908 3.06726 0.19077 40 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 41 3.34983 0.14060 3.40273 2.76795 41 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 42 0.15180 3.30814 2.75481 3.20307 42 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 43 0.15180 3.30814 2.75481 3.20307 43 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 44 0.15180 3.30814 2.75481 3.20307 44 - - 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 45 3.34983 0.14060 3.40273 2.76795 45 - - 1.38629 1.38629 1.38629 1.38629 0.01940 3.95229 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fifteenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:59:15 2012 NSEQ 5 EFFN 3.393555 CKSUM 3509542651 STATS LOCAL MSV -7.3147 0.71933 STATS LOCAL VITERBI -7.6680 0.71933 STATS LOCAL FORWARD -3.7818 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.81544 1.21795 1.12415 1.53030 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 0.00000 * 1 2.96311 3.61046 0.11471 3.51750 1 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 2 3.45893 0.12717 3.50729 2.84776 2 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 3 3.45893 0.12717 3.50729 2.84776 3 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 4 3.45893 0.12717 3.50729 2.84776 4 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 5 0.13897 3.40269 2.81647 3.30648 5 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 6 0.13897 3.40269 2.81647 3.30648 6 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 7 0.13897 3.40269 2.81647 3.30648 7 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 8 2.96311 3.61046 0.11471 3.51750 8 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 9 3.45893 0.12717 3.50729 2.84776 9 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 10 3.45893 0.12717 3.50729 2.84776 10 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 11 3.11130 2.60957 3.15859 0.17506 11 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 12 3.11130 2.60957 3.15859 0.17506 12 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 13 2.45725 1.18269 2.52749 0.63863 13 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 14 2.10374 0.82094 1.19844 1.99275 14 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 15 2.96311 3.61046 0.11471 3.51750 15 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 16 2.96311 3.61046 0.11471 3.51750 16 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 17 3.45893 0.12717 3.50729 2.84776 17 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 18 3.45893 0.12717 3.50729 2.84776 18 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 19 2.96311 3.61046 0.11471 3.51750 19 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 20 0.13897 3.40269 2.81647 3.30648 20 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 21 2.96311 3.61046 0.11471 3.51750 21 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 22 2.96311 3.61046 0.11471 3.51750 22 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 23 2.96311 3.61046 0.11471 3.51750 23 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 24 3.45893 0.12717 3.50729 2.84776 24 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 25 0.13897 3.40269 2.81647 3.30648 25 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 26 3.45893 0.12717 3.50729 2.84776 26 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 27 2.96311 3.61046 0.11471 3.51750 27 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 28 3.11130 2.60957 3.15859 0.17506 28 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 29 3.45893 0.12717 3.50729 2.84776 29 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 30 3.11130 2.60957 3.15859 0.17506 30 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 31 2.96311 3.61046 0.11471 3.51750 31 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 32 3.45893 0.12717 3.50729 2.84776 32 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 33 3.45893 0.12717 3.50729 2.84776 33 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 34 3.11130 2.60957 3.15859 0.17506 34 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 35 2.96311 3.61046 0.11471 3.51750 35 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 36 2.96311 3.61046 0.11471 3.51750 36 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 37 2.96311 3.61046 0.11471 3.51750 37 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 38 3.11130 2.60957 3.15859 0.17506 38 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 39 2.96311 3.61046 0.11471 3.51750 39 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 40 3.11130 2.60957 3.15859 0.17506 40 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 41 3.45893 0.12717 3.50729 2.84776 41 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 42 0.13897 3.40269 2.81647 3.30648 42 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 43 3.11130 2.60957 3.15859 0.17506 43 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 44 2.96311 3.61046 0.11471 3.51750 44 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 45 3.11130 2.60957 3.15859 0.17506 45 - - 1.38629 1.38629 1.38629 1.38629 0.01837 4.00616 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fifteenc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:59:22 2012 NSEQ 3 EFFN 3.000000 CKSUM 101589114 STATS LOCAL MSV -8.1735 0.71999 STATS LOCAL VITERBI -7.8984 0.71999 STATS LOCAL FORWARD -4.0579 0.71999 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.81067 1.32828 1.09424 1.44083 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.86982 3.47591 0.13017 3.36931 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.97980 2.52563 3.03204 0.19727 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 0.15719 3.27118 2.73043 3.16274 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.86982 3.47591 0.13017 3.36931 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.97980 2.52563 3.03204 0.19727 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.97980 2.52563 3.03204 0.19727 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 0.15719 3.27118 2.73043 3.16274 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.97980 2.52563 3.03204 0.19727 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.97980 2.52563 3.03204 0.19727 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 3.30705 0.14631 3.36166 2.73626 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.30705 0.14631 3.36166 2.73626 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.97980 2.52563 3.03204 0.19727 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.30705 0.14631 3.36166 2.73626 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.86982 3.47591 0.13017 3.36931 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fifteend_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:59:30 2012 NSEQ 131 EFFN 4.801361 CKSUM 1080313258 STATS LOCAL MSV -6.9593 0.71932 STATS LOCAL VITERBI -7.6174 0.71932 STATS LOCAL FORWARD -3.7137 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.79265 1.06993 1.10887 1.82936 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 0.00000 * 1 3.19616 3.95461 0.08375 3.89943 1 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 2 3.85798 0.08914 3.88792 3.13085 2 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 3 3.85798 0.08914 3.88792 3.13085 3 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 4 3.85798 0.08914 3.88792 3.13085 4 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 5 2.74199 3.28778 0.19714 2.56201 5 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 6 0.10072 3.75644 3.04476 3.69519 6 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 7 0.47413 2.89412 1.35031 2.76357 7 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 8 3.14065 3.82544 0.10063 3.48448 8 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 9 3.85798 0.08914 3.88792 3.13085 9 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 10 3.79514 0.10078 3.82825 2.96338 10 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 11 0.27431 2.43337 2.65241 2.50495 11 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 12 2.81648 1.37717 2.87932 0.45931 12 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 13 3.15429 2.00469 3.20368 0.24588 13 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 14 0.87326 1.37662 1.80543 1.79832 14 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 15 2.40378 2.35707 0.44543 1.74652 15 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 16 3.19616 3.95461 0.08375 3.89943 16 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 17 2.44960 0.55950 2.17179 1.47750 17 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 18 3.30475 0.21818 3.35916 2.08307 18 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 19 2.98239 2.83730 0.15414 3.39352 19 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 20 0.11390 3.70419 2.86929 3.63828 20 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 21 3.19616 3.95461 0.08375 3.89943 21 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 22 3.19616 3.95461 0.08375 3.89943 22 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 23 3.14010 3.52927 0.10104 3.75100 23 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 24 3.85798 0.08914 3.88792 3.13085 24 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 25 0.10072 3.75644 3.04476 3.69519 25 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 26 3.85798 0.08914 3.88792 3.13085 26 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 27 3.19616 3.95461 0.08375 3.89943 27 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 28 3.21562 2.13217 3.26215 0.21942 28 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 29 3.79551 0.10072 3.82859 2.96428 29 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 30 3.43944 2.69865 3.47444 0.13967 30 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 31 3.19616 3.95461 0.08375 3.89943 31 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 32 3.57082 0.14704 3.61478 2.50490 32 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 33 3.85798 0.08914 3.88792 3.13085 33 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 34 3.48600 2.84848 3.51857 0.12579 34 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 35 3.19616 3.95461 0.08375 3.89943 35 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 36 3.19616 3.95461 0.08375 3.89943 36 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 37 3.19616 3.95461 0.08375 3.89943 37 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 38 3.19029 0.13908 3.56005 2.80930 38 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 39 3.19616 3.95461 0.08375 3.89943 39 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 40 3.48600 2.84848 3.51857 0.12579 40 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 41 3.85798 0.08914 3.88792 3.13085 41 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 42 0.10072 3.75644 3.04476 3.69519 42 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 43 3.03155 0.13827 3.54533 2.95589 43 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 44 0.81984 2.48847 1.01425 2.17341 44 - - 1.38629 1.38629 1.38629 1.38629 0.02898 4.24869 4.24869 1.46634 0.26236 1.09861 0.40547 45 3.72146 0.11504 3.75830 2.79450 45 - - 1.38629 1.38629 1.38629 1.38629 0.01460 4.23430 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fivea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:56:13 2012 NSEQ 4 EFFN 3.261719 CKSUM 831295311 STATS LOCAL MSV -8.3184 0.71932 STATS LOCAL VITERBI -7.8263 0.71932 STATS LOCAL FORWARD -3.4947 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.92683 1.06762 1.03950 1.85194 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 0.00000 * 1 2.93372 3.56771 0.11938 3.47031 1 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 2 3.41037 0.13295 3.46079 2.81242 2 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 3 3.41037 0.13295 3.46079 2.81242 3 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 4 3.41037 0.13295 3.46079 2.81242 4 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 5 2.93372 3.56771 0.11938 3.47031 5 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 6 0.14453 3.36055 2.78910 3.26035 6 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 7 0.14453 3.36055 2.78910 3.26035 7 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 8 2.93372 3.56771 0.11938 3.47031 8 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 9 3.41037 0.13295 3.46079 2.81242 9 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 10 3.41037 0.13295 3.46079 2.81242 10 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 11 3.06875 2.58250 3.11766 0.18191 11 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 12 3.06875 2.58250 3.11766 0.18191 12 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 13 3.41037 0.13295 3.46079 2.81242 13 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 14 2.93372 3.56771 0.11938 3.47031 14 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 15 2.93372 3.56771 0.11938 3.47031 15 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 16 2.93372 3.56771 0.11938 3.47031 16 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 17 2.39444 0.95945 2.46670 0.81914 17 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 18 2.39444 0.95945 2.46670 0.81914 18 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 19 2.93372 3.56771 0.11938 3.47031 19 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 20 0.14453 3.36055 2.78910 3.26035 20 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 21 2.93372 3.56771 0.11938 3.47031 21 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 22 2.93372 3.56771 0.11938 3.47031 22 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 23 2.93372 3.56771 0.11938 3.47031 23 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 24 3.41037 0.13295 3.46079 2.81242 24 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 25 0.14453 3.36055 2.78910 3.26035 25 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 26 3.41037 0.13295 3.46079 2.81242 26 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 27 2.93372 3.56771 0.11938 3.47031 27 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 28 3.41037 0.13295 3.46079 2.81242 28 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 29 3.41037 0.13295 3.46079 2.81242 29 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 30 3.06875 2.58250 3.11766 0.18191 30 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 31 2.93372 3.56771 0.11938 3.47031 31 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 32 3.41037 0.13295 3.46079 2.81242 32 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 33 3.41037 0.13295 3.46079 2.81242 33 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 34 3.06875 2.58250 3.11766 0.18191 34 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 35 2.93372 3.56771 0.11938 3.47031 35 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 36 2.93372 3.56771 0.11938 3.47031 36 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 37 2.93372 3.56771 0.11938 3.47031 37 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 38 3.41037 0.13295 3.46079 2.81242 38 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 39 2.93372 3.56771 0.11938 3.47031 39 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 40 3.06875 2.58250 3.11766 0.18191 40 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 41 3.41037 0.13295 3.46079 2.81242 41 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 42 0.14453 3.36055 2.78910 3.26035 42 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 43 3.41037 0.13295 3.46079 2.81242 43 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 44 2.93372 3.56771 0.11938 3.47031 44 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 45 3.41037 0.13295 3.46079 2.81242 45 - - 1.38629 1.38629 1.38629 1.38629 0.01883 3.98187 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fiveb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:56:22 2012 NSEQ 3 EFFN 3.000000 CKSUM 2338491015 STATS LOCAL MSV -8.2394 0.72008 STATS LOCAL VITERBI -7.8111 0.72008 STATS LOCAL FORWARD -3.6939 0.72008 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.69406 1.11036 1.08253 1.91020 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.86982 3.47591 0.13017 3.36931 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 0.15719 3.27118 2.73043 3.16274 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.86982 3.47591 0.13017 3.36931 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 1.22293 1.99551 1.27815 1.23396 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.97980 2.52563 3.03204 0.19727 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 0.15719 3.27118 2.73043 3.16274 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.15719 3.27118 2.73043 3.16274 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.30705 0.14631 3.36166 2.73626 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 3.30705 0.14631 3.36166 2.73626 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.30705 0.14631 3.36166 2.73626 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.30705 0.14631 3.36166 2.73626 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.86982 3.47591 0.13017 3.36931 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fortya_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:12:04 2012 NSEQ 18 EFFN 3.783691 CKSUM 1791042696 STATS LOCAL MSV -6.8741 0.71932 STATS LOCAL VITERBI -7.8612 0.71932 STATS LOCAL FORWARD -3.9250 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.00396 1.23406 1.19203 1.30753 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 0.00000 * 1 3.04077 3.72472 0.10321 3.64403 1 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 2 3.58999 0.11296 3.63254 2.94190 2 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 3 3.04077 3.72472 0.10321 3.64403 3 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 4 3.58999 0.11296 3.63254 2.94190 4 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 5 3.58999 0.11296 3.63254 2.94190 5 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 6 3.58999 0.11296 3.63254 2.94190 6 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 7 3.11499 0.23213 3.17409 2.11243 7 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 8 2.61323 1.38493 2.67966 0.49795 8 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 9 3.22897 2.68419 3.27168 0.15761 9 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 10 3.04077 3.72472 0.10321 3.64403 10 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 11 3.04077 3.72472 0.10321 3.64403 11 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 12 3.22897 2.68419 3.27168 0.15761 12 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 13 0.12508 3.51713 2.89021 3.43205 13 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 14 3.22897 2.68419 3.27168 0.15761 14 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 15 3.22897 2.68419 3.27168 0.15761 15 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 16 3.58999 0.11296 3.63254 2.94190 16 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 17 3.58999 0.11296 3.63254 2.94190 17 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 18 1.82319 3.02529 0.30812 2.89828 18 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 19 1.28550 2.07537 1.18600 1.22916 19 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 20 2.25442 3.31379 0.20081 3.20344 20 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 21 3.04077 3.72472 0.10321 3.64403 21 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 22 3.04077 3.72472 0.10321 3.64403 22 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 23 3.04077 3.72472 0.10321 3.64403 23 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 24 3.58999 0.11296 3.63254 2.94190 24 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 25 0.12508 3.51713 2.89021 3.43205 25 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 26 3.22897 2.68419 3.27168 0.15761 26 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 27 3.04077 3.72472 0.10321 3.64403 27 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 28 3.58999 0.11296 3.63254 2.94190 28 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 29 3.58999 0.11296 3.63254 2.94190 29 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 30 3.22897 2.68419 3.27168 0.15761 30 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 31 3.04077 3.72472 0.10321 3.64403 31 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 32 3.22897 2.68419 3.27168 0.15761 32 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 33 3.22897 2.68419 3.27168 0.15761 33 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 34 3.58999 0.11296 3.63254 2.94190 34 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 35 3.04077 3.72472 0.10321 3.64403 35 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 36 0.12508 3.51713 2.89021 3.43205 36 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 37 3.04077 3.72472 0.10321 3.64403 37 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 38 3.58999 0.11296 3.63254 2.94190 38 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 39 3.04077 3.72472 0.10321 3.64403 39 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 40 3.22897 2.68419 3.27168 0.15761 40 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 41 3.58999 0.11296 3.63254 2.94190 41 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 42 0.12508 3.51713 2.89021 3.43205 42 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 43 3.22897 2.68419 3.27168 0.15761 43 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 44 3.22897 2.68419 3.27168 0.15761 44 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 45 1.83918 2.36226 2.57124 0.39987 45 - - 1.38629 1.38629 1.38629 1.38629 0.01714 4.07477 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fortyb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:12:10 2012 NSEQ 2 EFFN 2.000000 CKSUM 32026895 STATS LOCAL MSV -7.5235 0.72779 STATS LOCAL VITERBI -8.3648 0.72779 STATS LOCAL FORWARD -3.5398 0.72779 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.83079 1.23420 1.21908 1.37379 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.81865 0.23582 2.88868 2.35662 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.81865 0.23582 2.88868 2.35662 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fortyc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:12:17 2012 NSEQ 2 EFFN 2.000000 CKSUM 2184984864 STATS LOCAL MSV -7.4094 0.72832 STATS LOCAL VITERBI -8.3948 0.72832 STATS LOCAL FORWARD -3.4932 0.72832 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.66233 1.38558 1.31979 1.22781 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.57915 2.25909 2.64442 0.28946 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.23862 2.84929 2.43386 2.70756 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.81865 0.23582 2.88868 2.35662 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fortyonea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:12:27 2012 NSEQ 2 EFFN 2.000000 CKSUM 2924481573 STATS LOCAL MSV -7.4101 0.72843 STATS LOCAL VITERBI -8.3691 0.72843 STATS LOCAL FORWARD -3.6455 0.72843 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.74074 1.38343 1.32314 1.17898 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.23862 2.84929 2.43386 2.70756 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.81865 0.23582 2.88868 2.35662 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fortyoneb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:12:38 2012 NSEQ 2 EFFN 2.000000 CKSUM 3468270774 STATS LOCAL MSV -7.4190 0.72801 STATS LOCAL VITERBI -8.4353 0.72801 STATS LOCAL FORWARD -3.5007 0.72801 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.92183 1.28078 1.22118 1.26956 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.81865 0.23582 2.88868 2.35662 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fortyonec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:12:47 2012 NSEQ 2 EFFN 2.000000 CKSUM 2958063581 STATS LOCAL MSV -7.5700 0.72787 STATS LOCAL VITERBI -8.2073 0.72787 STATS LOCAL FORWARD -3.5550 0.72787 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.74595 1.23508 1.27185 1.36886 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.81865 0.23582 2.88868 2.35662 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fortyoned_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:12:59 2012 NSEQ 3 EFFN 3.000000 CKSUM 2944176339 STATS LOCAL MSV -8.0356 0.72024 STATS LOCAL VITERBI -7.9811 0.72024 STATS LOCAL FORWARD -3.7877 0.72024 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.03661 1.31928 1.14956 1.25377 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.97980 2.52563 3.03204 0.19727 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.97980 2.52563 3.03204 0.19727 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.86982 3.47591 0.13017 3.36931 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.97980 2.52563 3.03204 0.19727 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.86982 3.47591 0.13017 3.36931 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.97980 2.52563 3.03204 0.19727 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 3.30705 0.14631 3.36166 2.73626 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.86982 3.47591 0.13017 3.36931 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.97980 2.52563 3.03204 0.19727 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 3.30705 0.14631 3.36166 2.73626 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.15719 3.27118 2.73043 3.16274 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.30705 0.14631 3.36166 2.73626 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.97980 2.52563 3.03204 0.19727 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.97980 2.52563 3.03204 0.19727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fortythreea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:13:31 2012 NSEQ 3 EFFN 3.000000 CKSUM 545963122 STATS LOCAL MSV -8.1058 0.72013 STATS LOCAL VITERBI -7.7231 0.72013 STATS LOCAL FORWARD -3.7699 0.72013 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.63845 1.05232 1.46071 1.49377 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.97980 2.52563 3.03204 0.19727 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 0.15719 3.27118 2.73043 3.16274 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 3.30705 0.14631 3.36166 2.73626 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.15719 3.27118 2.73043 3.16274 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.97980 2.52563 3.03204 0.19727 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.86982 3.47591 0.13017 3.36931 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 3.30705 0.14631 3.36166 2.73626 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.97980 2.52563 3.03204 0.19727 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 3.30705 0.14631 3.36166 2.73626 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.97980 2.52563 3.03204 0.19727 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.97980 2.52563 3.03204 0.19727 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.30705 0.14631 3.36166 2.73626 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.15719 3.27118 2.73043 3.16274 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.97980 2.52563 3.03204 0.19727 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 3.30705 0.14631 3.36166 2.73626 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.15719 3.27118 2.73043 3.16274 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.15719 3.27118 2.73043 3.16274 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.30705 0.14631 3.36166 2.73626 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.30705 0.14631 3.36166 2.73626 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.30705 0.14631 3.36166 2.73626 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.30705 0.14631 3.36166 2.73626 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.86982 3.47591 0.13017 3.36931 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fortythreec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:13:42 2012 NSEQ 4 EFFN 3.152344 CKSUM 2383999962 STATS LOCAL MSV -7.9404 0.71933 STATS LOCAL VITERBI -7.6097 0.71933 STATS LOCAL FORWARD -3.9794 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.92616 1.32798 1.04338 1.43961 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 0.00000 * 1 3.03232 2.55926 3.08260 0.18802 1 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 2 2.90797 3.53050 0.12362 3.42932 2 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 3 3.36834 0.13821 3.42049 2.78160 3 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 4 2.90797 3.53050 0.12362 3.42932 4 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 5 3.36834 0.13821 3.42049 2.78160 5 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 6 3.36834 0.13821 3.42049 2.78160 6 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 7 3.36834 0.13821 3.42049 2.78160 7 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 8 2.90797 3.53050 0.12362 3.42932 8 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 9 2.90797 3.53050 0.12362 3.42932 9 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 10 2.90797 3.53050 0.12362 3.42932 10 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 11 2.90797 3.53050 0.12362 3.42932 11 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 12 3.36834 0.13821 3.42049 2.78160 12 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 13 3.03232 2.55926 3.08260 0.18802 13 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 14 3.03232 2.55926 3.08260 0.18802 14 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 15 2.90797 3.53050 0.12362 3.42932 15 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 16 3.03232 2.55926 3.08260 0.18802 16 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 17 3.36834 0.13821 3.42049 2.78160 17 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 18 3.36834 0.13821 3.42049 2.78160 18 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 19 2.90797 3.53050 0.12362 3.42932 19 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 20 0.14954 3.32415 2.76532 3.22056 20 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 21 2.90797 3.53050 0.12362 3.42932 21 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 22 2.90797 3.53050 0.12362 3.42932 22 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 23 2.90797 3.53050 0.12362 3.42932 23 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 24 3.36834 0.13821 3.42049 2.78160 24 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 25 0.14954 3.32415 2.76532 3.22056 25 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 26 3.03232 2.55926 3.08260 0.18802 26 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 27 2.90797 3.53050 0.12362 3.42932 27 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 28 3.03232 2.55926 3.08260 0.18802 28 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 29 3.36834 0.13821 3.42049 2.78160 29 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 30 3.03232 2.55926 3.08260 0.18802 30 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 31 2.90797 3.53050 0.12362 3.42932 31 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 32 2.90797 3.53050 0.12362 3.42932 32 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 33 3.36834 0.13821 3.42049 2.78160 33 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 34 3.03232 2.55926 3.08260 0.18802 34 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 35 2.90797 3.53050 0.12362 3.42932 35 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 36 0.14954 3.32415 2.76532 3.22056 36 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 37 2.90797 3.53050 0.12362 3.42932 37 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 38 3.36834 0.13821 3.42049 2.78160 38 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 39 2.90797 3.53050 0.12362 3.42932 39 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 40 3.03232 2.55926 3.08260 0.18802 40 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 41 3.36834 0.13821 3.42049 2.78160 41 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 42 3.03232 2.55926 3.08260 0.18802 42 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 43 0.14954 3.32415 2.76532 3.22056 43 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 44 0.14954 3.32415 2.76532 3.22056 44 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 45 3.03232 2.55926 3.08260 0.18802 45 - - 1.38629 1.38629 1.38629 1.38629 0.01922 3.96126 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fortythreed_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:13:51 2012 NSEQ 4 EFFN 3.128906 CKSUM 3164554758 STATS LOCAL MSV -8.3104 0.71931 STATS LOCAL VITERBI -7.6805 0.71931 STATS LOCAL FORWARD -3.6350 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.06183 1.00496 1.20814 1.57038 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 0.00000 * 1 3.02437 2.55419 3.07496 0.18939 1 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 2 2.90228 3.52232 0.12458 3.42031 2 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 3 3.35912 0.13939 3.41165 2.77481 3 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 4 2.90228 3.52232 0.12458 3.42031 4 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 5 3.35912 0.13939 3.41165 2.77481 5 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 6 3.35912 0.13939 3.41165 2.77481 6 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 7 3.35912 0.13939 3.41165 2.77481 7 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 8 2.90228 3.52232 0.12458 3.42031 8 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 9 3.35912 0.13939 3.41165 2.77481 9 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 10 2.90228 3.52232 0.12458 3.42031 10 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 11 2.90228 3.52232 0.12458 3.42031 11 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 12 3.35912 0.13939 3.41165 2.77481 12 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 13 3.02437 2.55419 3.07496 0.18939 13 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 14 3.02437 2.55419 3.07496 0.18939 14 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 15 2.90228 3.52232 0.12458 3.42031 15 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 16 3.02437 2.55419 3.07496 0.18939 16 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 17 3.35912 0.13939 3.41165 2.77481 17 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 18 3.35912 0.13939 3.41165 2.77481 18 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 19 0.15066 3.31617 2.76009 3.21184 19 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 20 0.15066 3.31617 2.76009 3.21184 20 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 21 2.90228 3.52232 0.12458 3.42031 21 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 22 2.90228 3.52232 0.12458 3.42031 22 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 23 2.90228 3.52232 0.12458 3.42031 23 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 24 3.35912 0.13939 3.41165 2.77481 24 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 25 0.15066 3.31617 2.76009 3.21184 25 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 26 3.02437 2.55419 3.07496 0.18939 26 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 27 2.90228 3.52232 0.12458 3.42031 27 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 28 3.35912 0.13939 3.41165 2.77481 28 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 29 3.35912 0.13939 3.41165 2.77481 29 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 30 3.02437 2.55419 3.07496 0.18939 30 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 31 3.02437 2.55419 3.07496 0.18939 31 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 32 3.35912 0.13939 3.41165 2.77481 32 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 33 3.35912 0.13939 3.41165 2.77481 33 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 34 3.02437 2.55419 3.07496 0.18939 34 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 35 2.90228 3.52232 0.12458 3.42031 35 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 36 0.15066 3.31617 2.76009 3.21184 36 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 37 2.90228 3.52232 0.12458 3.42031 37 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 38 3.35912 0.13939 3.41165 2.77481 38 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 39 2.90228 3.52232 0.12458 3.42031 39 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 40 3.02437 2.55419 3.07496 0.18939 40 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 41 3.35912 0.13939 3.41165 2.77481 41 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 42 3.35912 0.13939 3.41165 2.77481 42 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 43 3.35912 0.13939 3.41165 2.77481 43 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 44 3.35912 0.13939 3.41165 2.77481 44 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 45 2.90228 3.52232 0.12458 3.42031 45 - - 1.38629 1.38629 1.38629 1.38629 0.01931 3.95679 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fortythreee_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:14:00 2012 NSEQ 2 EFFN 2.000000 CKSUM 4293616081 STATS LOCAL MSV -7.4799 0.72798 STATS LOCAL VITERBI -8.1984 0.72798 STATS LOCAL FORWARD -3.3468 0.72798 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.83129 1.23142 1.27214 1.31795 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.53331 3.02441 0.20344 2.88069 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.57915 2.25909 2.64442 0.28946 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.57915 2.25909 2.64442 0.28946 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fortythreef_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:14:09 2012 NSEQ 2 EFFN 2.000000 CKSUM 763339787 STATS LOCAL MSV -7.5094 0.72740 STATS LOCAL VITERBI -8.2548 0.72740 STATS LOCAL FORWARD -2.9788 0.72740 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.84146 1.01995 1.27767 1.59892 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.53331 3.02441 0.20344 2.88069 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.57915 2.25909 2.64442 0.28946 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.57915 2.25909 2.64442 0.28946 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fortythreeg_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:14:18 2012 NSEQ 2 EFFN 2.000000 CKSUM 908133251 STATS LOCAL MSV -7.6472 0.72756 STATS LOCAL VITERBI -8.1033 0.72756 STATS LOCAL FORWARD -2.9704 0.72756 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.67672 1.01892 1.38834 1.59682 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.53331 3.02441 0.20344 2.88069 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.23862 2.84929 2.43386 2.70756 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.57915 2.25909 2.64442 0.28946 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.57915 2.25909 2.64442 0.28946 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fortytwo_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:13:18 2012 NSEQ 4 EFFN 3.246094 CKSUM 3050631641 STATS LOCAL MSV -7.9920 0.71931 STATS LOCAL VITERBI -7.7116 0.71931 STATS LOCAL FORWARD -3.9001 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.54804 1.53365 1.19335 1.31533 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 0.00000 * 1 2.93012 3.56249 0.11996 3.46456 1 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 2 3.40447 0.13368 3.45513 2.80810 2 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 3 0.14522 3.35543 2.78576 3.25475 3 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 4 3.40447 0.13368 3.45513 2.80810 4 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 5 3.06361 2.57923 3.11272 0.18276 5 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 6 3.06361 2.57923 3.11272 0.18276 6 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 7 3.40447 0.13368 3.45513 2.80810 7 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 8 3.06361 2.57923 3.11272 0.18276 8 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 9 3.06361 2.57923 3.11272 0.18276 9 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 10 2.93012 3.56249 0.11996 3.46456 10 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 11 2.93012 3.56249 0.11996 3.46456 11 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 12 3.06361 2.57923 3.11272 0.18276 12 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 13 0.14522 3.35543 2.78576 3.25475 13 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 14 3.06361 2.57923 3.11272 0.18276 14 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 15 3.06361 2.57923 3.11272 0.18276 15 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 16 3.40447 0.13368 3.45513 2.80810 16 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 17 3.40447 0.13368 3.45513 2.80810 17 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 18 2.93012 3.56249 0.11996 3.46456 18 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 19 0.14522 3.35543 2.78576 3.25475 19 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 20 2.93012 3.56249 0.11996 3.46456 20 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 21 2.93012 3.56249 0.11996 3.46456 21 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 22 0.14522 3.35543 2.78576 3.25475 22 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 23 2.93012 3.56249 0.11996 3.46456 23 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 24 3.06361 2.57923 3.11272 0.18276 24 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 25 0.14522 3.35543 2.78576 3.25475 25 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 26 3.40447 0.13368 3.45513 2.80810 26 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 27 0.14522 3.35543 2.78576 3.25475 27 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 28 3.40447 0.13368 3.45513 2.80810 28 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 29 0.14522 3.35543 2.78576 3.25475 29 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 30 3.06361 2.57923 3.11272 0.18276 30 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 31 2.93012 3.56249 0.11996 3.46456 31 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 32 3.40447 0.13368 3.45513 2.80810 32 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 33 3.06361 2.57923 3.11272 0.18276 33 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 34 3.06361 2.57923 3.11272 0.18276 34 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 35 2.93012 3.56249 0.11996 3.46456 35 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 36 0.14522 3.35543 2.78576 3.25475 36 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 37 2.93012 3.56249 0.11996 3.46456 37 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 38 2.93012 3.56249 0.11996 3.46456 38 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 39 2.93012 3.56249 0.11996 3.46456 39 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 40 3.06361 2.57923 3.11272 0.18276 40 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 41 3.40447 0.13368 3.45513 2.80810 41 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 42 0.14522 3.35543 2.78576 3.25475 42 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 43 2.93012 3.56249 0.11996 3.46456 43 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 44 3.06361 2.57923 3.11272 0.18276 44 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 45 2.93012 3.56249 0.11996 3.46456 45 - - 1.38629 1.38629 1.38629 1.38629 0.01888 3.97895 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_foura_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:55:55 2012 NSEQ 84 EFFN 3.847778 CKSUM 4048195829 STATS LOCAL MSV -7.0232 0.71933 STATS LOCAL VITERBI -7.5679 0.71933 STATS LOCAL FORWARD -3.6342 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.83579 1.09209 1.08959 1.77996 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 0.00000 * 1 3.05237 3.74189 0.10160 3.66308 1 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 2 3.60983 0.11097 3.65148 2.95601 2 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 3 3.60983 0.11097 3.65148 2.95601 3 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 4 3.60983 0.11097 3.65148 2.95601 4 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 5 0.65354 2.63334 1.12312 2.49258 5 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 6 0.12310 3.53457 2.90140 3.45121 6 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 7 0.14875 3.43421 2.64957 3.34423 7 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 8 0.99864 2.61882 0.74515 2.47612 8 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 9 3.60983 0.11097 3.65148 2.95601 9 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 10 3.52435 0.12777 3.56920 2.77588 10 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 11 2.92049 1.95573 2.97625 0.28283 11 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 12 3.16088 2.47148 3.20649 0.18314 12 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 13 3.60983 0.11097 3.65148 2.95601 13 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 14 2.88034 3.67195 0.11561 3.58856 14 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 15 3.05237 3.74189 0.10160 3.66308 15 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 16 3.05237 3.74189 0.10160 3.66308 16 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 17 2.49739 0.93875 2.56828 0.79870 17 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 18 3.52522 0.12759 3.57003 2.77761 18 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 19 2.73085 3.60227 0.13036 3.51344 19 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 20 0.12310 3.53457 2.90140 3.45121 20 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 21 3.05237 3.74189 0.10160 3.66308 21 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 22 3.05237 3.74189 0.10160 3.66308 22 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 23 3.05237 3.74189 0.10160 3.66308 23 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 24 3.60983 0.11097 3.65148 2.95601 24 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 25 0.12310 3.53457 2.90140 3.45121 25 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 26 3.60983 0.11097 3.65148 2.95601 26 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 27 3.05237 3.74189 0.10160 3.66308 27 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 28 2.72644 1.58672 2.78931 0.40274 28 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 29 3.60983 0.11097 3.65148 2.95601 29 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 30 3.24719 2.69574 3.28917 0.15509 30 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 31 3.05237 3.74189 0.10160 3.66308 31 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 32 3.60983 0.11097 3.65148 2.95601 32 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 33 3.60983 0.11097 3.65148 2.95601 33 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 34 3.24719 2.69574 3.28917 0.15509 34 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 35 3.05237 3.74189 0.10160 3.66308 35 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 36 3.05237 3.74189 0.10160 3.66308 36 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 37 3.05237 3.74189 0.10160 3.66308 37 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 38 2.52147 1.09588 2.59121 0.67239 38 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 39 3.05237 3.74189 0.10160 3.66308 39 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 40 3.24719 2.69574 3.28917 0.15509 40 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 41 3.60983 0.11097 3.65148 2.95601 41 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 42 0.12310 3.53457 2.90140 3.45121 42 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 43 3.60983 0.11097 3.65148 2.95601 43 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 44 3.05237 3.74189 0.10160 3.66308 44 - - 1.38629 1.38629 1.38629 1.38629 0.03363 4.10228 4.10228 1.46634 0.26236 1.09861 0.40547 45 3.40214 0.15437 3.45168 2.55037 45 - - 1.38629 1.38629 1.38629 1.38629 0.01696 4.08560 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fourb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:56:01 2012 NSEQ 72 EFFN 3.353027 CKSUM 2221390108 STATS LOCAL MSV -8.2307 0.71933 STATS LOCAL VITERBI -7.6868 0.71933 STATS LOCAL FORWARD -3.6608 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.84517 1.20286 1.08278 1.59447 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 0.00000 * 1 2.95426 3.59755 0.11609 3.50324 1 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 2 3.44424 0.12889 3.49323 2.83710 2 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 3 3.44424 0.12889 3.49323 2.83710 3 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 4 3.30174 0.16053 3.35503 2.56941 4 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 5 0.39178 2.77392 1.65838 2.64108 5 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 6 0.14063 3.38993 2.80820 3.29251 6 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 7 0.14063 3.38993 2.80820 3.29251 7 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 8 2.95426 3.59755 0.11609 3.50324 8 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 9 3.44424 0.12889 3.49323 2.83710 9 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 10 3.44424 0.12889 3.49323 2.83710 10 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 11 3.03572 2.44757 3.08564 0.19875 11 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 12 3.09838 2.60135 3.14616 0.17711 12 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 13 3.25955 0.17093 3.31416 2.49677 13 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 14 2.95426 3.59755 0.11609 3.50324 14 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 15 2.95426 3.59755 0.11609 3.50324 15 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 16 2.95426 3.59755 0.11609 3.50324 16 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 17 3.35136 0.14895 3.40309 2.65806 17 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 18 3.33783 0.15205 3.38998 2.63348 18 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 19 2.95426 3.59755 0.11609 3.50324 19 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 20 0.14063 3.38993 2.80820 3.29251 20 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 21 2.95426 3.59755 0.11609 3.50324 21 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 22 2.95426 3.59755 0.11609 3.50324 22 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 23 2.95426 3.59755 0.11609 3.50324 23 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 24 3.44424 0.12889 3.49323 2.83710 24 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 25 0.14063 3.38993 2.80820 3.29251 25 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 26 3.44424 0.12889 3.49323 2.83710 26 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 27 2.95426 3.59755 0.11609 3.50324 27 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 28 3.00267 2.37154 3.05383 0.21093 28 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 29 3.44424 0.12889 3.49323 2.83710 29 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 30 3.09838 2.60135 3.14616 0.17711 30 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 31 2.95426 3.59755 0.11609 3.50324 31 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 32 3.44424 0.12889 3.49323 2.83710 32 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 33 3.44424 0.12889 3.49323 2.83710 33 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 34 3.09838 2.60135 3.14616 0.17711 34 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 35 2.95426 3.59755 0.11609 3.50324 35 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 36 2.95426 3.59755 0.11609 3.50324 36 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 37 2.95426 3.59755 0.11609 3.50324 37 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 38 3.09838 2.60135 3.14616 0.17711 38 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 39 2.95426 3.59755 0.11609 3.50324 39 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 40 3.09838 2.60135 3.14616 0.17711 40 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 41 3.44424 0.12889 3.49323 2.83710 41 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 42 0.14063 3.38993 2.80820 3.29251 42 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 43 3.09838 2.60135 3.14616 0.17711 43 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 44 2.55487 3.39693 0.16062 3.29129 44 - - 1.38629 1.38629 1.38629 1.38629 0.03668 4.01693 4.01693 1.46634 0.26236 1.09861 0.40547 45 2.69179 1.73920 2.75435 0.36683 45 - - 1.38629 1.38629 1.38629 1.38629 0.01851 3.99876 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fourteena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:58:34 2012 NSEQ 22 EFFN 3.279053 CKSUM 925715289 STATS LOCAL MSV -8.1455 0.71932 STATS LOCAL VITERBI -7.7758 0.71932 STATS LOCAL FORWARD -3.6982 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.93052 1.08270 1.09008 1.71448 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 0.00000 * 1 2.93769 3.57346 0.11874 3.47665 1 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 2 3.41689 0.13216 3.46703 2.81717 2 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 3 3.41689 0.13216 3.46703 2.81717 3 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 4 3.41689 0.13216 3.46703 2.81717 4 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 5 2.93769 3.57346 0.11874 3.47665 5 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 6 0.14377 3.36619 2.79278 3.26653 6 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 7 0.14377 3.36619 2.79278 3.26653 7 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 8 2.93769 3.57346 0.11874 3.47665 8 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 9 3.41689 0.13216 3.46703 2.81717 9 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 10 3.41689 0.13216 3.46703 2.81717 10 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 11 3.07443 2.58612 3.12313 0.18098 11 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 12 2.94214 2.27790 2.99548 0.22975 12 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 13 2.67926 0.40755 2.74840 1.59911 13 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 14 2.51627 0.56322 2.58799 1.29210 14 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 15 2.93769 3.57346 0.11874 3.47665 15 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 16 2.93769 3.57346 0.11874 3.47665 16 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 17 3.41689 0.13216 3.46703 2.81717 17 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 18 3.41689 0.13216 3.46703 2.81717 18 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 19 2.93769 3.57346 0.11874 3.47665 19 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 20 0.14377 3.36619 2.79278 3.26653 20 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 21 2.93769 3.57346 0.11874 3.47665 21 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 22 2.93769 3.57346 0.11874 3.47665 22 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 23 2.93769 3.57346 0.11874 3.47665 23 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 24 3.41689 0.13216 3.46703 2.81717 24 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 25 0.14377 3.36619 2.79278 3.26653 25 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 26 3.41689 0.13216 3.46703 2.81717 26 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 27 2.93769 3.57346 0.11874 3.47665 27 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 28 3.41689 0.13216 3.46703 2.81717 28 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 29 3.41689 0.13216 3.46703 2.81717 29 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 30 3.07443 2.58612 3.12313 0.18098 30 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 31 2.93769 3.57346 0.11874 3.47665 31 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 32 3.41689 0.13216 3.46703 2.81717 32 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 33 3.41689 0.13216 3.46703 2.81717 33 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 34 3.07443 2.58612 3.12313 0.18098 34 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 35 2.93769 3.57346 0.11874 3.47665 35 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 36 2.93769 3.57346 0.11874 3.47665 36 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 37 2.93769 3.57346 0.11874 3.47665 37 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 38 3.07443 2.58612 3.12313 0.18098 38 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 39 2.93769 3.57346 0.11874 3.47665 39 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 40 3.07443 2.58612 3.12313 0.18098 40 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 41 3.41689 0.13216 3.46703 2.81717 41 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 42 0.14377 3.36619 2.79278 3.26653 42 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 43 3.07443 2.58612 3.12313 0.18098 43 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 44 2.93769 3.57346 0.11874 3.47665 44 - - 1.38629 1.38629 1.38629 1.38629 0.03719 4.00352 4.00352 1.46634 0.26236 1.09861 0.40547 45 3.41689 0.13216 3.46703 2.81717 45 - - 1.38629 1.38629 1.38629 1.38629 0.01877 3.98510 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fourteenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:58:43 2012 NSEQ 70 EFFN 5.088501 CKSUM 3721269259 STATS LOCAL MSV -6.9134 0.71932 STATS LOCAL VITERBI -7.5879 0.71932 STATS LOCAL FORWARD -3.9680 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.74852 1.17930 1.12647 1.63836 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 0.00000 * 1 3.23147 4.00602 0.07995 3.95644 1 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 2 3.91828 0.08456 3.94536 3.17332 2 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 3 3.91828 0.08456 3.94536 3.17332 3 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 4 3.91828 0.08456 3.94536 3.17332 4 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 5 0.79959 2.79109 0.87053 2.65351 5 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 6 0.09584 3.81176 3.08128 3.75595 6 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 7 0.15518 3.59484 2.44690 3.51624 7 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 8 3.23147 4.00602 0.07995 3.95644 8 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 9 3.91828 0.08456 3.94536 3.17332 9 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 10 3.68591 0.13033 3.72518 2.61710 10 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 11 1.02535 2.25303 1.99463 0.91583 11 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 12 3.54765 2.88869 3.57783 0.11921 12 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 13 2.86796 1.36880 2.92992 0.45354 13 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 14 0.92182 2.35489 2.37750 0.88063 14 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 15 3.00728 3.52277 0.15387 2.75403 15 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 16 3.23147 4.00602 0.07995 3.95644 16 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 17 2.70343 0.91545 2.77157 0.75476 17 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 18 2.70302 0.91159 2.77119 0.75817 18 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 19 2.57166 3.76703 0.13292 3.69155 19 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 20 0.09584 3.81176 3.08128 3.75595 20 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 21 3.23147 4.00602 0.07995 3.95644 21 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 22 3.23147 4.00602 0.07995 3.95644 22 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 23 3.23147 4.00602 0.07995 3.95644 23 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 24 3.91828 0.08456 3.94536 3.17332 24 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 25 0.09584 3.81176 3.08128 3.75595 25 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 26 3.91828 0.08456 3.94536 3.17332 26 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 27 3.23147 4.00602 0.07995 3.95644 27 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 28 2.90699 1.44095 2.96753 0.41973 28 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 29 3.91828 0.08456 3.94536 3.17332 29 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 30 3.54765 2.88869 3.57783 0.11921 30 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 31 3.23147 4.00602 0.07995 3.95644 31 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 32 2.92260 0.28356 2.11528 2.62403 32 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 33 3.91828 0.08456 3.94536 3.17332 33 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 34 3.54765 2.88869 3.57783 0.11921 34 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 35 3.23147 4.00602 0.07995 3.95644 35 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 36 3.23147 4.00602 0.07995 3.95644 36 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 37 3.23147 4.00602 0.07995 3.95644 37 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 38 3.25886 2.10105 3.30452 0.21999 38 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 39 3.23147 4.00602 0.07995 3.95644 39 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 40 3.54765 2.88869 3.57783 0.11921 40 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 41 3.91828 0.08456 3.94536 3.17332 41 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 42 0.16564 3.56007 2.37153 3.47792 42 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 43 3.91828 0.08456 3.94536 3.17332 43 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 44 0.45840 2.95212 1.36221 2.82373 44 - - 1.38629 1.38629 1.38629 1.38629 0.02782 4.28888 4.28888 1.46634 0.26236 1.09861 0.40547 45 2.48432 0.20130 3.26267 2.80243 45 - - 1.38629 1.38629 1.38629 1.38629 0.01401 4.27507 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_fourteenc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:58:51 2012 NSEQ 76 EFFN 3.576416 CKSUM 815551676 STATS LOCAL MSV -7.3595 0.71933 STATS LOCAL VITERBI -7.6264 0.71933 STATS LOCAL FORWARD -3.7388 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.71585 1.10671 1.18523 1.69354 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 0.00000 * 1 3.00112 3.66619 0.10893 3.57914 1 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 2 3.52263 0.12002 3.56821 2.89372 2 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 3 3.52263 0.12002 3.56821 2.89372 3 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 4 3.33822 0.15991 3.39007 2.54371 4 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 5 2.76693 0.29348 2.48446 2.22463 5 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 6 0.13203 3.45816 2.85229 3.36731 6 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 7 0.13203 3.45816 2.85229 3.36731 7 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 8 2.79755 3.57585 0.12743 3.48359 8 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 9 3.52263 0.12002 3.56821 2.89372 9 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 10 3.52263 0.12002 3.56821 2.89372 10 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 11 2.35672 2.47836 2.82474 0.27172 11 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 12 2.35672 2.47836 2.82474 0.27172 12 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 13 3.04627 0.24542 3.10719 2.07654 13 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 14 2.03581 2.24688 2.01567 0.46130 14 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 15 3.00112 3.66619 0.10893 3.57914 15 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 16 3.00112 3.66619 0.10893 3.57914 16 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 17 3.35009 0.15709 3.40153 2.56431 17 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 18 3.33595 0.16045 3.38788 2.53979 18 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 19 2.83488 3.59354 0.12369 3.50246 19 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 20 0.13203 3.45816 2.85229 3.36731 20 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 21 3.00112 3.66619 0.10893 3.57914 21 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 22 3.00112 3.66619 0.10893 3.57914 22 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 23 3.00112 3.66619 0.10893 3.57914 23 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 24 3.52263 0.12002 3.56821 2.89372 24 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 25 0.13203 3.45816 2.85229 3.36731 25 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 26 3.52263 0.12002 3.56821 2.89372 26 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 27 3.00112 3.66619 0.10893 3.57914 27 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 28 3.16795 2.64551 3.21304 0.16640 28 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 29 3.52263 0.12002 3.56821 2.89372 29 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 30 3.16795 2.64551 3.21304 0.16640 30 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 31 3.00112 3.66619 0.10893 3.57914 31 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 32 3.52263 0.12002 3.56821 2.89372 32 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 33 3.52263 0.12002 3.56821 2.89372 33 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 34 3.16795 2.64551 3.21304 0.16640 34 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 35 3.00112 3.66619 0.10893 3.57914 35 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 36 3.00112 3.66619 0.10893 3.57914 36 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 37 3.00112 3.66619 0.10893 3.57914 37 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 38 2.95253 2.14756 3.00617 0.24649 38 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 39 3.00112 3.66619 0.10893 3.57914 39 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 40 3.16795 2.64551 3.21304 0.16640 40 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 41 3.52263 0.12002 3.56821 2.89372 41 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 42 0.13203 3.45816 2.85229 3.36731 42 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 43 3.52263 0.12002 3.56821 2.89372 43 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 44 0.13203 3.45816 2.85229 3.36731 44 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05637 4.05637 1.46634 0.26236 1.09861 0.40547 45 0.22308 2.59280 2.65587 2.90222 45 - - 1.38629 1.38629 1.38629 1.38629 0.01777 4.03891 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_nine_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:57:25 2012 NSEQ 19 EFFN 3.604248 CKSUM 3064978032 STATS LOCAL MSV -7.4838 0.71932 STATS LOCAL VITERBI -7.7664 0.71932 STATS LOCAL FORWARD -4.0255 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.74205 1.14988 1.13928 1.67071 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 0.00000 * 1 3.00664 3.67433 0.10811 3.58816 1 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 2 3.53197 0.11901 3.57713 2.90043 2 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 3 3.53197 0.11901 3.57713 2.90043 3 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 4 3.10101 0.22787 3.16041 2.15106 4 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 5 3.00664 3.67433 0.10811 3.58816 5 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 6 0.13104 3.46632 2.85754 3.37625 6 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 7 0.13104 3.46632 2.85754 3.37625 7 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 8 0.57908 2.63204 1.25561 2.49191 8 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 9 3.53197 0.11901 3.57713 2.90043 9 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 10 3.53197 0.11901 3.57713 2.90043 10 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 11 0.13104 3.46632 2.85754 3.37625 11 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 12 2.48868 1.14773 2.55863 0.64968 12 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 13 3.17633 2.65083 3.22110 0.16516 13 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 14 2.67716 0.44679 2.74640 1.48101 14 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 15 3.00664 3.67433 0.10811 3.58816 15 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 16 3.00664 3.67433 0.10811 3.58816 16 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 17 3.17633 2.65083 3.22110 0.16516 17 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 18 3.17633 2.65083 3.22110 0.16516 18 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 19 3.00664 3.67433 0.10811 3.58816 19 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 20 0.13104 3.46632 2.85754 3.37625 20 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 21 1.40422 2.73373 0.48649 2.59447 21 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 22 3.00664 3.67433 0.10811 3.58816 22 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 23 3.00664 3.67433 0.10811 3.58816 23 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 24 3.53197 0.11901 3.57713 2.90043 24 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 25 0.13104 3.46632 2.85754 3.37625 25 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 26 3.53197 0.11901 3.57713 2.90043 26 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 27 3.00664 3.67433 0.10811 3.58816 27 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 28 3.17633 2.65083 3.22110 0.16516 28 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 29 3.53197 0.11901 3.57713 2.90043 29 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 30 3.17633 2.65083 3.22110 0.16516 30 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 31 3.00664 3.67433 0.10811 3.58816 31 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 32 3.53197 0.11901 3.57713 2.90043 32 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 33 3.53197 0.11901 3.57713 2.90043 33 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 34 3.17633 2.65083 3.22110 0.16516 34 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 35 3.00664 3.67433 0.10811 3.58816 35 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 36 3.00664 3.67433 0.10811 3.58816 36 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 37 3.00664 3.67433 0.10811 3.58816 37 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 38 3.53197 0.11901 3.57713 2.90043 38 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 39 3.00664 3.67433 0.10811 3.58816 39 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 40 3.17633 2.65083 3.22110 0.16516 40 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 41 3.53197 0.11901 3.57713 2.90043 41 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 42 0.13104 3.46632 2.85754 3.37625 42 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 43 3.53197 0.11901 3.57713 2.90043 43 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 44 3.00664 3.67433 0.10811 3.58816 44 - - 1.38629 1.38629 1.38629 1.38629 0.03507 4.06117 4.06117 1.46634 0.26236 1.09861 0.40547 45 3.53197 0.11901 3.57713 2.90043 45 - - 1.38629 1.38629 1.38629 1.38629 0.01769 4.04380 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_nineteena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:02:03 2012 NSEQ 28 EFFN 3.394043 CKSUM 1268754513 STATS LOCAL MSV -7.3768 0.71932 STATS LOCAL VITERBI -7.8823 0.71932 STATS LOCAL FORWARD -3.6277 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.89704 1.12183 1.05905 1.72866 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 0.00000 * 1 2.96321 3.61061 0.11469 3.51767 1 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 2 3.45911 0.12715 3.50746 2.84789 2 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 3 3.45911 0.12715 3.50746 2.84789 3 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 4 3.45911 0.12715 3.50746 2.84789 4 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 5 2.96321 3.61061 0.11469 3.51767 5 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 6 0.13895 3.40284 2.81657 3.30665 6 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 7 2.96321 3.61061 0.11469 3.51767 7 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 8 2.96321 3.61061 0.11469 3.51767 8 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 9 3.45911 0.12715 3.50746 2.84789 9 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 10 3.11146 2.60966 3.15874 0.17504 10 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 11 0.13895 3.40284 2.81657 3.30665 11 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 12 3.11146 2.60966 3.15874 0.17504 12 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 13 2.42392 1.02380 2.49546 0.75557 13 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 14 3.11146 2.60966 3.15874 0.17504 14 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 15 2.96321 3.61061 0.11469 3.51767 15 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 16 2.96321 3.61061 0.11469 3.51767 16 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 17 3.45911 0.12715 3.50746 2.84789 17 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 18 3.45911 0.12715 3.50746 2.84789 18 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 19 1.14671 2.58217 0.65511 2.43811 19 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 20 0.13895 3.40284 2.81657 3.30665 20 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 21 2.96321 3.61061 0.11469 3.51767 21 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 22 2.96321 3.61061 0.11469 3.51767 22 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 23 2.96321 3.61061 0.11469 3.51767 23 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 24 3.45911 0.12715 3.50746 2.84789 24 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 25 0.13895 3.40284 2.81657 3.30665 25 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 26 3.45911 0.12715 3.50746 2.84789 26 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 27 2.96321 3.61061 0.11469 3.51767 27 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 28 3.45911 0.12715 3.50746 2.84789 28 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 29 3.45911 0.12715 3.50746 2.84789 29 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 30 3.11146 2.60966 3.15874 0.17504 30 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 31 2.96321 3.61061 0.11469 3.51767 31 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 32 3.45911 0.12715 3.50746 2.84789 32 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 33 3.45911 0.12715 3.50746 2.84789 33 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 34 3.11146 2.60966 3.15874 0.17504 34 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 35 2.96321 3.61061 0.11469 3.51767 35 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 36 2.96321 3.61061 0.11469 3.51767 36 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 37 2.96321 3.61061 0.11469 3.51767 37 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 38 3.45911 0.12715 3.50746 2.84789 38 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 39 2.96321 3.61061 0.11469 3.51767 39 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 40 3.11146 2.60966 3.15874 0.17504 40 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 41 3.45911 0.12715 3.50746 2.84789 41 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 42 0.13895 3.40284 2.81657 3.30665 42 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 43 2.56629 1.46611 2.63304 0.47723 43 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 44 2.96321 3.61061 0.11469 3.51767 44 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 45 3.45911 0.12715 3.50746 2.84789 45 - - 1.38629 1.38629 1.38629 1.38629 0.01837 4.00625 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_nineteenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:02:11 2012 NSEQ 23 EFFN 3.433716 CKSUM 1681062768 STATS LOCAL MSV -7.2331 0.71933 STATS LOCAL VITERBI -7.7346 0.71933 STATS LOCAL FORWARD -3.7798 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.81746 1.11882 1.08211 1.76016 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 0.00000 * 1 2.97172 3.62305 0.11337 3.53141 1 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 2 3.47328 0.12552 3.52102 2.85815 2 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 3 3.47328 0.12552 3.52102 2.85815 3 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 4 3.47328 0.12552 3.52102 2.85815 4 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 5 2.43175 0.82289 2.50402 0.93853 5 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 6 0.13737 3.41516 2.82454 3.32015 6 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 7 0.13737 3.41516 2.82454 3.32015 7 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 8 2.97172 3.62305 0.11337 3.53141 8 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 9 3.47328 0.12552 3.52102 2.85815 9 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 10 3.47328 0.12552 3.52102 2.85815 10 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 11 2.97172 3.62305 0.11337 3.53141 11 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 12 3.12398 2.61761 3.17077 0.17308 12 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 13 3.07935 0.19490 2.81068 2.64608 13 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 14 0.13737 3.41516 2.82454 3.32015 14 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 15 2.97172 3.62305 0.11337 3.53141 15 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 16 2.97172 3.62305 0.11337 3.53141 16 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 17 2.54959 0.55101 2.62082 1.29912 17 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 18 2.56939 0.52704 2.64034 1.34043 18 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 19 2.97172 3.62305 0.11337 3.53141 19 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 20 0.13737 3.41516 2.82454 3.32015 20 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 21 2.97172 3.62305 0.11337 3.53141 21 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 22 2.97172 3.62305 0.11337 3.53141 22 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 23 2.97172 3.62305 0.11337 3.53141 23 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 24 3.47328 0.12552 3.52102 2.85815 24 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 25 0.13737 3.41516 2.82454 3.32015 25 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 26 3.47328 0.12552 3.52102 2.85815 26 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 27 2.97172 3.62305 0.11337 3.53141 27 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 28 3.47328 0.12552 3.52102 2.85815 28 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 29 3.12398 2.61761 3.17077 0.17308 29 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 30 3.12398 2.61761 3.17077 0.17308 30 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 31 2.97172 3.62305 0.11337 3.53141 31 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 32 3.47328 0.12552 3.52102 2.85815 32 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 33 3.47328 0.12552 3.52102 2.85815 33 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 34 3.12398 2.61761 3.17077 0.17308 34 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 35 2.97172 3.62305 0.11337 3.53141 35 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 36 2.97172 3.62305 0.11337 3.53141 36 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 37 2.97172 3.62305 0.11337 3.53141 37 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 38 3.12398 2.61761 3.17077 0.17308 38 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 39 2.97172 3.62305 0.11337 3.53141 39 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 40 3.12398 2.61761 3.17077 0.17308 40 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 41 3.47328 0.12552 3.52102 2.85815 41 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 42 0.13737 3.41516 2.82454 3.32015 42 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 43 3.47328 0.12552 3.52102 2.85815 43 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 44 2.97172 3.62305 0.11337 3.53141 44 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03135 4.03135 1.46634 0.26236 1.09861 0.40547 45 3.47328 0.12552 3.52102 2.85815 45 - - 1.38629 1.38629 1.38629 1.38629 0.01824 4.01344 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_nineteenc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:02:26 2012 NSEQ 7 EFFN 3.052246 CKSUM 1936706614 STATS LOCAL MSV -8.1766 0.71933 STATS LOCAL VITERBI -7.8521 0.71933 STATS LOCAL FORWARD -3.2521 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.93182 1.01394 1.09971 1.83657 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 0.00000 * 1 2.88322 3.49501 0.12784 3.39028 1 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 2 3.32843 0.14342 3.38220 2.75214 2 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 3 3.32843 0.14342 3.38220 2.75214 3 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 4 3.32843 0.14342 3.38220 2.75214 4 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 5 3.32843 0.14342 3.38220 2.75214 5 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 6 0.15447 3.28965 2.74264 3.18289 6 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 7 0.15447 3.28965 2.74264 3.18289 7 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 8 2.88322 3.49501 0.12784 3.39028 8 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 9 3.32843 0.14342 3.38220 2.75214 9 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 10 3.32843 0.14342 3.38220 2.75214 10 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 11 2.99804 2.53734 3.04961 0.19400 11 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 12 2.99804 2.53734 3.04961 0.19400 12 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 13 3.32843 0.14342 3.38220 2.75214 13 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 14 2.88322 3.49501 0.12784 3.39028 14 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 15 2.88322 3.49501 0.12784 3.39028 15 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 16 2.88322 3.49501 0.12784 3.39028 16 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 17 3.32843 0.14342 3.38220 2.75214 17 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 18 3.32843 0.14342 3.38220 2.75214 18 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 19 2.88322 3.49501 0.12784 3.39028 19 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 20 0.15447 3.28965 2.74264 3.18289 20 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 21 2.88322 3.49501 0.12784 3.39028 21 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 22 2.88322 3.49501 0.12784 3.39028 22 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 23 2.88322 3.49501 0.12784 3.39028 23 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 24 3.32843 0.14342 3.38220 2.75214 24 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 25 0.15447 3.28965 2.74264 3.18289 25 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 26 3.32843 0.14342 3.38220 2.75214 26 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 27 2.88322 3.49501 0.12784 3.39028 27 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 28 3.32843 0.14342 3.38220 2.75214 28 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 29 2.99804 2.53734 3.04961 0.19400 29 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 30 2.99804 2.53734 3.04961 0.19400 30 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 31 2.88322 3.49501 0.12784 3.39028 31 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 32 3.32843 0.14342 3.38220 2.75214 32 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 33 3.32843 0.14342 3.38220 2.75214 33 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 34 2.99804 2.53734 3.04961 0.19400 34 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 35 2.88322 3.49501 0.12784 3.39028 35 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 36 2.88322 3.49501 0.12784 3.39028 36 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 37 2.88322 3.49501 0.12784 3.39028 37 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 38 3.32843 0.14342 3.38220 2.75214 38 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 39 2.88322 3.49501 0.12784 3.39028 39 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 40 2.99804 2.53734 3.04961 0.19400 40 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 41 3.32843 0.14342 3.38220 2.75214 41 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 42 0.15447 3.28965 2.74264 3.18289 42 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 43 3.32843 0.14342 3.38220 2.75214 43 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 44 2.88322 3.49501 0.12784 3.39028 44 - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 1.09861 0.40547 45 3.32843 0.14342 3.38220 2.75214 45 - - 1.38629 1.38629 1.38629 1.38629 0.01960 3.94202 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_nineteend_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:02:37 2012 NSEQ 856 EFFN 5.554413 CKSUM 733056095 STATS LOCAL MSV -6.6456 0.71932 STATS LOCAL VITERBI -7.5969 0.71932 STATS LOCAL FORWARD -3.9880 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.74504 1.15587 1.11456 1.70091 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 0.00000 * 1 3.23345 3.95902 0.09091 3.56135 1 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 2 4.00514 0.07838 4.02816 3.23494 2 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 3 3.96337 0.08642 3.98881 3.09507 3 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 4 3.84642 0.10955 3.87859 2.78499 4 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 5 1.61944 2.42984 0.45902 2.50057 5 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 6 0.09745 3.86160 3.00225 3.81028 6 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 7 0.29717 2.86598 2.35447 2.25176 7 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 8 2.97800 3.78889 0.10313 3.71027 8 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 9 4.00514 0.07838 4.02816 3.23494 9 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 10 3.95927 0.08721 3.98496 3.08242 10 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 11 0.47869 2.44590 2.14476 1.73351 11 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 12 3.53226 2.57566 3.56532 0.14344 12 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 13 3.17703 2.21298 3.20717 0.21264 13 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 14 0.48947 2.12807 2.31988 1.77374 14 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 15 3.23908 3.63645 0.08938 3.91407 15 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 16 3.28325 4.08014 0.07476 4.03840 16 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 17 2.61871 0.71582 2.56034 1.01879 17 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 18 2.79100 0.98435 2.85745 0.67818 18 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 19 2.88958 3.91627 0.10528 3.71275 19 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 20 0.10529 3.83285 2.89277 3.77822 20 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 21 3.13578 4.04625 0.08257 4.00081 21 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 22 3.28325 4.08014 0.07476 4.03840 22 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 23 3.14551 4.04868 0.08201 4.00351 23 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 24 4.00514 0.07838 4.02816 3.23494 24 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 25 0.10009 3.59942 3.10949 3.75993 25 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 26 3.91614 0.09562 3.94435 2.95832 26 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 27 3.25566 3.77958 0.08388 3.95951 27 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 28 2.83114 0.59636 2.89858 1.09321 28 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 29 4.00514 0.07838 4.02816 3.23494 29 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 30 3.27989 2.81282 3.53878 0.13550 30 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 31 3.28325 4.08014 0.07476 4.03840 31 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 32 4.00514 0.07838 4.02816 3.23494 32 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 33 3.92955 0.09299 3.95697 2.99526 33 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 34 3.60551 2.81966 3.63419 0.12014 34 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 35 3.14615 4.04883 0.08198 4.00369 35 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 36 3.28325 4.08014 0.07476 4.03840 36 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 37 3.28325 4.08014 0.07476 4.03840 37 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 38 3.12209 1.65978 3.17582 0.32297 38 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 39 3.28325 4.08014 0.07476 4.03840 39 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 40 3.63936 2.94947 3.66605 0.11005 40 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 41 3.91395 0.09096 3.78906 3.11522 41 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 42 0.11267 3.77567 2.89076 3.57194 42 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 43 3.71094 0.09575 3.91271 3.06052 43 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 44 0.69515 2.09592 1.51651 1.84157 44 - - 1.38629 1.38629 1.38629 1.38629 0.02613 4.35085 4.35085 1.46634 0.26236 1.09861 0.40547 45 1.71415 0.62668 2.27327 1.70075 45 - - 1.38629 1.38629 1.38629 1.38629 0.01315 4.33787 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:55:14 2012 NSEQ 587 EFFN 3.891777 CKSUM 1697391222 STATS LOCAL MSV -7.1697 0.71931 STATS LOCAL VITERBI -7.5248 0.71931 STATS LOCAL FORWARD -3.7808 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.71133 1.10198 1.09475 1.88033 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 0.00000 * 1 3.06016 3.75344 0.10053 3.67589 1 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 2 3.62320 0.10965 3.66422 2.96550 2 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 3 3.56594 0.12071 3.60913 2.84114 3 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 4 3.36563 0.16464 3.41655 2.47178 4 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 5 2.81056 3.64966 0.12157 3.56477 5 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 6 0.12179 3.54633 2.90895 3.46414 6 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 7 0.17514 3.06396 2.62741 3.17743 7 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 8 2.91815 3.69722 0.11173 3.61602 8 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 9 3.56658 0.12058 3.60974 2.84245 9 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 10 3.62320 0.10965 3.66422 2.96550 10 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 11 0.20648 3.24919 2.25688 3.14477 11 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 12 2.93498 1.96420 2.99032 0.27928 12 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 13 2.57765 1.24737 2.64559 0.56947 13 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 14 0.12179 3.54633 2.90895 3.46414 14 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 15 3.06016 3.75344 0.10053 3.67589 15 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 16 3.06016 3.75344 0.10053 3.67589 16 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 17 2.85229 0.35474 2.91819 1.67717 17 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 18 3.17254 0.21846 3.23000 2.16467 18 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 19 2.62184 3.38064 0.15152 3.38409 19 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 20 0.12179 3.54633 2.90895 3.46414 20 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 21 2.92968 3.70206 0.11075 3.62122 21 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 22 3.06016 3.75344 0.10053 3.67589 22 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 23 3.06016 3.75344 0.10053 3.67589 23 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 24 3.62320 0.10965 3.66422 2.96550 24 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 25 0.12179 3.54633 2.90895 3.46414 25 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 26 3.62320 0.10965 3.66422 2.96550 26 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 27 3.06016 3.75344 0.10053 3.67589 27 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 28 2.85132 1.80401 2.90988 0.32419 28 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 29 3.62320 0.10965 3.66422 2.96550 29 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 30 3.25952 2.70356 3.30102 0.15341 30 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 31 3.06016 3.75344 0.10053 3.67589 31 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 32 3.62320 0.10965 3.66422 2.96550 32 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 33 3.51379 0.13127 3.55903 2.73696 33 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 34 3.25952 2.70356 3.30102 0.15341 34 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 35 3.06016 3.75344 0.10053 3.67589 35 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 36 3.06016 3.75344 0.10053 3.67589 36 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 37 3.06016 3.75344 0.10053 3.67589 37 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 38 3.13791 0.22977 3.19643 2.11195 38 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 39 3.06016 3.75344 0.10053 3.67589 39 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 40 3.25952 2.70356 3.30102 0.15341 40 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 41 3.62320 0.10965 3.66422 2.96550 41 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 42 0.15696 3.41095 2.57610 3.31922 42 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 43 3.27489 0.13187 3.50961 2.88566 43 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 44 1.30792 2.73853 0.52656 2.59939 44 - - 1.38629 1.38629 1.38629 1.38629 0.03338 4.10952 4.10952 1.46634 0.26236 1.09861 0.40547 45 3.16945 0.21944 3.22700 2.15995 45 - - 1.38629 1.38629 1.38629 1.38629 0.01683 4.09297 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_sevena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:56:45 2012 NSEQ 310 EFFN 3.855133 CKSUM 3216610733 STATS LOCAL MSV -7.0299 0.71931 STATS LOCAL VITERBI -7.7698 0.71931 STATS LOCAL FORWARD -3.9428 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.67405 1.19795 1.11767 1.69466 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 0.00000 * 1 3.05368 3.74384 0.10142 3.66524 1 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 2 3.61208 0.11075 3.65362 2.95761 2 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 3 3.61208 0.11075 3.65362 2.95761 3 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 4 2.59107 1.29979 2.65845 0.54057 4 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 5 3.05368 3.74384 0.10142 3.66524 5 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 6 0.12288 3.53654 2.90267 3.45338 6 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 7 0.12288 3.53654 2.90267 3.45338 7 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 8 2.98957 3.60522 0.12061 3.32062 8 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 9 3.61208 0.11075 3.65362 2.95761 9 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 10 3.61208 0.11075 3.65362 2.95761 10 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 11 0.16647 3.30347 2.72562 2.97421 11 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 12 3.18560 2.52848 3.23014 0.17517 12 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 13 2.50599 0.79710 2.57733 0.93702 13 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 14 0.27114 2.82965 2.52499 2.31874 14 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 15 3.05368 3.74384 0.10142 3.66524 15 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 16 3.05368 3.74384 0.10142 3.66524 16 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 17 2.46692 1.31463 2.58990 0.55940 17 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 18 2.95659 2.02338 3.01095 0.26585 18 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 19 2.53330 3.49926 0.15422 3.40229 19 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 20 0.12288 3.53654 2.90267 3.45338 20 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 21 0.50829 2.72162 1.35743 2.58515 21 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 22 3.05368 3.74384 0.10142 3.66524 22 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 23 3.05368 3.74384 0.10142 3.66524 23 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 24 3.61208 0.11075 3.65362 2.95761 24 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 25 0.12288 3.53654 2.90267 3.45338 25 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 26 3.61208 0.11075 3.65362 2.95761 26 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 27 3.05368 3.74384 0.10142 3.66524 27 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 28 3.15074 2.44306 3.19681 0.18706 28 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 29 3.61208 0.11075 3.65362 2.95761 29 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 30 3.24926 2.69705 3.29116 0.15480 30 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 31 3.05368 3.74384 0.10142 3.66524 31 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 32 3.61208 0.11075 3.65362 2.95761 32 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 33 3.41158 0.15244 3.46077 2.56405 33 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 34 3.24926 2.69705 3.29116 0.15480 34 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 35 3.05368 3.74384 0.10142 3.66524 35 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 36 3.05368 3.74384 0.10142 3.66524 36 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 37 3.05368 3.74384 0.10142 3.66524 37 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 38 3.53725 0.12537 3.58159 2.79845 38 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 39 3.05368 3.74384 0.10142 3.66524 39 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 40 3.24926 2.69705 3.29116 0.15480 40 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 41 3.61208 0.11075 3.65362 2.95761 41 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 42 0.12288 3.53654 2.90267 3.45338 42 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 43 3.61208 0.11075 3.65362 2.95761 43 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 44 2.89872 3.68146 0.11388 3.59882 44 - - 1.38629 1.38629 1.38629 1.38629 0.03359 4.10349 4.10349 1.46634 0.26236 1.09861 0.40547 45 3.55506 0.12180 3.59872 2.83466 45 - - 1.38629 1.38629 1.38629 1.38629 0.01693 4.08684 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_sevenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:56:54 2012 NSEQ 184 EFFN 4.096313 CKSUM 2897657156 STATS LOCAL MSV -7.4526 0.71932 STATS LOCAL VITERBI -7.5187 0.71932 STATS LOCAL FORWARD -3.9319 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.73723 1.11401 1.12992 1.75624 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 0.00000 * 1 3.09467 3.80465 0.09594 3.73279 1 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 2 3.55672 0.12851 3.60023 2.73722 2 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 3 3.53201 0.13366 3.57655 2.68978 3 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 4 3.33147 0.18101 3.38384 2.34426 4 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 5 2.02324 2.72720 0.29637 2.83260 5 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 6 0.11611 3.59888 2.94269 3.52192 6 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 7 0.21327 2.87621 2.62174 2.76401 7 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 8 3.09467 3.80465 0.09594 3.73279 8 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 9 3.62514 0.11488 3.66575 2.87711 9 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 10 3.68265 0.10401 3.72091 3.00757 10 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 11 0.11611 3.59888 2.94269 3.52192 11 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 12 3.06832 2.13915 3.11882 0.23378 12 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 13 3.04696 2.09498 3.09839 0.24296 13 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 14 0.13047 3.54101 2.78212 3.46007 14 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 15 3.09467 3.80465 0.09594 3.73279 15 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 16 3.09467 3.80465 0.09594 3.73279 16 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 17 3.31413 0.18568 3.36711 2.31667 17 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 18 2.65424 0.47357 2.66048 1.43988 18 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 19 2.77225 3.46439 0.13224 3.50459 19 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 20 0.11611 3.59888 2.94269 3.52192 20 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 21 2.73642 3.65689 0.12634 3.57310 21 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 22 3.09467 3.80465 0.09594 3.73279 22 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 23 3.09467 3.80465 0.09594 3.73279 23 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 24 3.33501 0.12429 3.57448 2.93312 24 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 25 0.11611 3.59888 2.94269 3.52192 25 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 26 3.61888 0.11609 3.65976 2.86371 26 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 27 3.09467 3.80465 0.09594 3.73279 27 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 28 3.06936 2.14133 3.11982 0.23334 28 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 29 3.68265 0.10401 3.72091 3.00757 29 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 30 3.31505 2.73883 3.35436 0.14608 30 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 31 3.09467 3.80465 0.09594 3.73279 31 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 32 3.51746 0.13675 3.56261 2.66251 32 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 33 3.55003 0.12990 3.59382 2.72424 33 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 34 3.31505 2.73883 3.35436 0.14608 34 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 35 3.09467 3.80465 0.09594 3.73279 35 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 36 3.09467 3.80465 0.09594 3.73279 36 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 37 3.09467 3.80465 0.09594 3.73279 37 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 38 3.38555 0.15427 3.27515 2.64099 38 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 39 2.94006 3.74674 0.10749 3.67066 39 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 40 3.31505 2.73883 3.35436 0.14608 40 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 41 2.84891 0.20155 2.98732 2.60085 41 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 42 1.72403 2.16146 2.48249 0.47327 42 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 43 3.56741 0.12633 3.61046 2.75818 43 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 44 0.41750 2.70260 1.70268 2.38509 44 - - 1.38629 1.38629 1.38629 1.38629 0.03228 4.14255 4.14255 1.46634 0.26236 1.09861 0.40547 45 3.52354 0.13546 3.56843 2.67384 45 - - 1.38629 1.38629 1.38629 1.38629 0.01627 4.12654 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_seventeen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:01:38 2012 NSEQ 21 EFFN 3.242798 CKSUM 1804940685 STATS LOCAL MSV -8.0506 0.71931 STATS LOCAL VITERBI -7.8621 0.71931 STATS LOCAL FORWARD -3.9865 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.54969 1.31844 1.19398 1.52729 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 0.00000 * 1 2.92936 3.56139 0.12009 3.46334 1 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 2 3.40322 0.13383 3.45393 2.80719 2 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 3 3.40322 0.13383 3.45393 2.80719 3 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 4 3.06252 2.57853 3.11167 0.18294 4 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 5 2.92936 3.56139 0.12009 3.46334 5 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 6 0.14537 3.35434 2.78506 3.25357 6 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 7 0.14537 3.35434 2.78506 3.25357 7 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 8 0.14537 3.35434 2.78506 3.25357 8 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 9 3.40322 0.13383 3.45393 2.80719 9 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 10 3.40322 0.13383 3.45393 2.80719 10 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 11 0.14537 3.35434 2.78506 3.25357 11 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 12 3.06252 2.57853 3.11167 0.18294 12 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 13 3.06252 2.57853 3.11167 0.18294 13 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 14 0.14537 3.35434 2.78506 3.25357 14 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 15 2.92936 3.56139 0.12009 3.46334 15 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 16 2.92936 3.56139 0.12009 3.46334 16 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 17 3.06252 2.57853 3.11167 0.18294 17 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 18 3.06252 2.57853 3.11167 0.18294 18 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 19 2.92936 3.56139 0.12009 3.46334 19 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 20 0.14537 3.35434 2.78506 3.25357 20 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 21 2.92936 3.56139 0.12009 3.46334 21 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 22 2.92936 3.56139 0.12009 3.46334 22 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 23 2.92936 3.56139 0.12009 3.46334 23 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 24 3.40322 0.13383 3.45393 2.80719 24 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 25 0.14537 3.35434 2.78506 3.25357 25 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 26 3.40322 0.13383 3.45393 2.80719 26 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 27 2.92936 3.56139 0.12009 3.46334 27 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 28 2.59442 1.59732 2.65985 0.42631 28 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 29 3.40322 0.13383 3.45393 2.80719 29 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 30 3.06252 2.57853 3.11167 0.18294 30 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 31 2.92936 3.56139 0.12009 3.46334 31 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 32 3.40322 0.13383 3.45393 2.80719 32 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 33 3.40322 0.13383 3.45393 2.80719 33 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 34 3.06252 2.57853 3.11167 0.18294 34 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 35 2.92936 3.56139 0.12009 3.46334 35 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 36 2.92936 3.56139 0.12009 3.46334 36 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 37 2.92936 3.56139 0.12009 3.46334 37 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 38 3.06252 2.57853 3.11167 0.18294 38 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 39 2.92936 3.56139 0.12009 3.46334 39 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 40 3.06252 2.57853 3.11167 0.18294 40 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 41 3.40322 0.13383 3.45393 2.80719 41 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 42 0.14537 3.35434 2.78506 3.25357 42 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 43 3.40322 0.13383 3.45393 2.80719 43 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 44 0.14537 3.35434 2.78506 3.25357 44 - - 1.38629 1.38629 1.38629 1.38629 0.03744 3.99688 3.99688 1.46634 0.26236 1.09861 0.40547 45 3.40322 0.13383 3.45393 2.80719 45 - - 1.38629 1.38629 1.38629 1.38629 0.01889 3.97833 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_six_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:56:35 2012 NSEQ 53 EFFN 3.768616 CKSUM 2228915480 STATS LOCAL MSV -7.1018 0.71931 STATS LOCAL VITERBI -7.4669 0.71931 STATS LOCAL FORWARD -3.6610 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.73514 1.11339 1.10213 1.81389 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 0.00000 * 1 3.03800 3.72062 0.10360 3.63948 1 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 2 3.58526 0.11344 3.62802 2.93853 2 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 3 3.58526 0.11344 3.62802 2.93853 3 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 4 3.22322 0.19760 3.27897 2.28465 4 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 5 2.45755 3.43624 0.16660 3.33445 5 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 6 0.12555 3.51297 2.88754 3.42748 6 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 7 0.12555 3.51297 2.88754 3.42748 7 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 8 3.03800 3.72062 0.10360 3.63948 8 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 9 3.58526 0.11344 3.62802 2.93853 9 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 10 3.58526 0.11344 3.62802 2.93853 10 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 11 0.61343 2.31223 2.08242 1.44883 11 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 12 3.05803 2.27604 3.10788 0.21612 12 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 13 2.92548 2.00153 2.98079 0.27381 13 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 14 0.12555 3.51297 2.88754 3.42748 14 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 15 3.03800 3.72062 0.10360 3.63948 15 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 16 2.94024 3.23793 0.13365 3.41110 16 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 17 3.58526 0.11344 3.62802 2.93853 17 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 18 3.23244 0.16906 2.94715 2.75527 18 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 19 2.11016 2.43820 0.51231 1.64843 19 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 20 0.12555 3.51297 2.88754 3.42748 20 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 21 3.03800 3.72062 0.10360 3.63948 21 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 22 3.03800 3.72062 0.10360 3.63948 22 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 23 3.03800 3.72062 0.10360 3.63948 23 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 24 3.58526 0.11344 3.62802 2.93853 24 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 25 0.12555 3.51297 2.88754 3.42748 25 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 26 3.58526 0.11344 3.62802 2.93853 26 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 27 3.03800 3.72062 0.10360 3.63948 27 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 28 3.22464 2.68145 3.26752 0.15822 28 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 29 3.58526 0.11344 3.62802 2.93853 29 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 30 3.22464 2.68145 3.26752 0.15822 30 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 31 3.03800 3.72062 0.10360 3.63948 31 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 32 3.58526 0.11344 3.62802 2.93853 32 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 33 1.52707 0.55184 2.39442 2.15661 33 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 34 3.22464 2.68145 3.26752 0.15822 34 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 35 3.03800 3.72062 0.10360 3.63948 35 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 36 3.03800 3.72062 0.10360 3.63948 36 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 37 3.03800 3.72062 0.10360 3.63948 37 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 38 3.58526 0.11344 3.62802 2.93853 38 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 39 3.03800 3.72062 0.10360 3.63948 39 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 40 3.22464 2.68145 3.26752 0.15822 40 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 41 3.58526 0.11344 3.62802 2.93853 41 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 42 0.12555 3.51297 2.88754 3.42748 42 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 43 3.58526 0.11344 3.62802 2.93853 43 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 44 2.33055 3.35882 0.18721 3.25152 44 - - 1.38629 1.38629 1.38629 1.38629 0.03408 4.08910 4.08910 1.46634 0.26236 1.09861 0.40547 45 3.15566 0.21804 3.21353 2.17963 45 - - 1.38629 1.38629 1.38629 1.38629 0.01719 4.07220 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_sixteena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:00:03 2012 NSEQ 2 EFFN 2.000000 CKSUM 4271773268 STATS LOCAL MSV -7.4881 0.72737 STATS LOCAL VITERBI -8.2452 0.72737 STATS LOCAL FORWARD -3.2511 0.72737 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.74640 1.19459 1.17033 1.54879 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_sixteenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:00:16 2012 NSEQ 2 EFFN 2.000000 CKSUM 3116648824 STATS LOCAL MSV -7.5374 0.72780 STATS LOCAL VITERBI -8.1699 0.72780 STATS LOCAL FORWARD -3.2302 0.72780 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.63616 1.14978 1.19874 1.67669 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.92825 2.28391 0.95698 2.13014 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.23862 2.84929 2.43386 2.70756 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.57915 2.25909 2.64442 0.28946 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_sixteenc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:00:32 2012 NSEQ 2 EFFN 2.000000 CKSUM 3328582486 STATS LOCAL MSV -7.5913 0.72754 STATS LOCAL VITERBI -8.2420 0.72754 STATS LOCAL FORWARD -3.2668 0.72754 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.58895 1.23335 1.11811 1.72796 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.15554 1.00938 2.23102 0.88601 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_sixteend_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:00:44 2012 NSEQ 2 EFFN 2.000000 CKSUM 2690199688 STATS LOCAL MSV -7.4512 0.72744 STATS LOCAL VITERBI -8.1553 0.72744 STATS LOCAL FORWARD -3.0217 0.72744 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.52139 1.23657 1.11708 1.80803 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.23862 2.84929 2.43386 2.70756 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.15554 1.00938 2.23102 0.88601 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_sixteene_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:00:52 2012 NSEQ 2 EFFN 2.000000 CKSUM 1246193707 STATS LOCAL MSV -7.6594 0.72693 STATS LOCAL VITERBI -8.3817 0.72693 STATS LOCAL FORWARD -3.2424 0.72693 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.67229 1.06970 1.17261 1.83562 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.23862 2.84929 2.43386 2.70756 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_sixteenf_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:00:59 2012 NSEQ 4 EFFN 3.324219 CKSUM 2175191417 STATS LOCAL MSV -8.1113 0.71931 STATS LOCAL VITERBI -7.7973 0.71931 STATS LOCAL FORWARD -4.0579 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.81924 1.35994 1.13918 1.34288 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 0.00000 * 1 2.94787 3.58826 0.11710 3.49298 1 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 2 3.43368 0.13014 3.48311 2.82941 2 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 3 3.43368 0.13014 3.48311 2.82941 3 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 4 3.43368 0.13014 3.48311 2.82941 4 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 5 2.94787 3.58826 0.11710 3.49298 5 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 6 0.14183 3.38076 2.80224 3.28247 6 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 7 0.14183 3.38076 2.80224 3.28247 7 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 8 2.94787 3.58826 0.11710 3.49298 8 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 9 3.43368 0.13014 3.48311 2.82941 9 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 10 3.43368 0.13014 3.48311 2.82941 10 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 11 3.08911 2.59546 3.13724 0.17860 11 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 12 3.08911 2.59546 3.13724 0.17860 12 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 13 3.08911 2.59546 3.13724 0.17860 13 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 14 2.40564 0.95744 2.47775 0.81648 14 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 15 2.94787 3.58826 0.11710 3.49298 15 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 16 2.94787 3.58826 0.11710 3.49298 16 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 17 3.08911 2.59546 3.13724 0.17860 17 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 18 3.08911 2.59546 3.13724 0.17860 18 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 19 2.94787 3.58826 0.11710 3.49298 19 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 20 0.14183 3.38076 2.80224 3.28247 20 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 21 2.94787 3.58826 0.11710 3.49298 21 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 22 2.94787 3.58826 0.11710 3.49298 22 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 23 2.94787 3.58826 0.11710 3.49298 23 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 24 3.43368 0.13014 3.48311 2.82941 24 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 25 0.14183 3.38076 2.80224 3.28247 25 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 26 3.43368 0.13014 3.48311 2.82941 26 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 27 2.94787 3.58826 0.11710 3.49298 27 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 28 3.08911 2.59546 3.13724 0.17860 28 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 29 3.43368 0.13014 3.48311 2.82941 29 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 30 3.08911 2.59546 3.13724 0.17860 30 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 31 2.94787 3.58826 0.11710 3.49298 31 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 32 3.43368 0.13014 3.48311 2.82941 32 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 33 3.43368 0.13014 3.48311 2.82941 33 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 34 3.08911 2.59546 3.13724 0.17860 34 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 35 2.94787 3.58826 0.11710 3.49298 35 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 36 2.94787 3.58826 0.11710 3.49298 36 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 37 2.94787 3.58826 0.11710 3.49298 37 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 38 3.08911 2.59546 3.13724 0.17860 38 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 39 2.94787 3.58826 0.11710 3.49298 39 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 40 3.08911 2.59546 3.13724 0.17860 40 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 41 3.43368 0.13014 3.48311 2.82941 41 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 42 0.14183 3.38076 2.80224 3.28247 42 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 43 3.08911 2.59546 3.13724 0.17860 43 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 44 0.14183 3.38076 2.80224 3.28247 44 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 45 3.08911 2.59546 3.13724 0.17860 45 - - 1.38629 1.38629 1.38629 1.38629 0.01861 3.99346 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_sixteeng_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:01:05 2012 NSEQ 259 EFFN 5.876663 CKSUM 2080383098 STATS LOCAL MSV -6.8494 0.71932 STATS LOCAL VITERBI -7.5742 0.71932 STATS LOCAL FORWARD -3.8484 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.87146 1.09869 1.04791 1.81939 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 0.00000 * 1 3.25652 3.98041 0.09166 3.49372 1 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 2 4.05846 0.07481 4.07906 3.27320 2 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 3 4.05846 0.07481 4.07906 3.27320 3 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 4 3.38016 0.16154 3.62148 2.42607 4 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 5 2.10689 3.33236 0.21172 3.39658 5 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 6 0.09953 3.84657 3.13639 3.50842 6 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 7 0.58852 1.86574 1.96016 1.90225 7 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 8 3.11584 4.08330 0.08205 4.04115 8 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 9 3.98375 0.08968 4.00891 3.01571 9 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 10 4.05846 0.07481 4.07906 3.27320 10 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 11 1.04282 2.08610 1.36256 1.31913 11 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 12 3.24936 2.16890 3.03079 0.22487 12 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 13 2.50608 0.69859 2.71663 1.03556 13 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 14 0.58777 2.03139 1.77080 1.94430 14 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 15 3.31584 4.12580 0.07173 4.08866 15 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 16 3.31584 4.12580 0.07173 4.08866 16 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 17 3.43429 0.22420 3.48624 1.98066 17 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 18 2.47272 0.88431 2.68831 0.83322 18 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 19 2.85814 3.67483 0.12005 3.49358 19 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 20 0.08513 3.94327 3.17054 3.89984 20 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 21 3.31584 4.12580 0.07173 4.08866 21 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 22 3.31584 4.12580 0.07173 4.08866 22 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 23 3.31584 4.12580 0.07173 4.08866 23 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 24 4.05846 0.07481 4.07906 3.27320 24 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 25 0.10856 3.36623 3.11658 3.72778 25 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 26 4.05846 0.07481 4.07906 3.27320 26 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 27 3.31584 4.12580 0.07173 4.08866 27 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 28 2.82645 0.90413 2.89292 0.73299 28 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 29 4.05846 0.07481 4.07906 3.27320 29 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 30 3.69746 2.98870 3.72201 0.10461 30 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 31 3.31584 4.12580 0.07173 4.08866 31 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 32 4.05846 0.07481 4.07906 3.27320 32 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 33 3.99165 0.08810 4.01633 3.03977 33 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 34 3.69746 2.98870 3.72201 0.10461 34 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 35 3.31584 4.12580 0.07173 4.08866 35 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 36 3.31584 4.12580 0.07173 4.08866 36 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 37 3.31584 4.12580 0.07173 4.08866 37 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 38 2.82444 0.75591 2.89169 0.87805 38 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 39 3.11214 4.08241 0.08226 4.04015 39 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 40 3.69746 2.98870 3.72201 0.10461 40 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 41 4.01227 0.08399 4.03568 3.10564 41 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 42 0.15862 3.32760 2.98983 2.80508 42 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 43 3.41107 0.16215 3.37951 2.49351 43 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 44 2.11068 3.32108 0.21182 3.39258 44 - - 1.38629 1.38629 1.38629 1.38629 0.02507 4.39156 4.39156 1.46634 0.26236 1.09861 0.40547 45 1.65342 0.56510 2.50870 1.83929 45 - - 1.38629 1.38629 1.38629 1.38629 0.01262 4.37911 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_ten_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:57:35 2012 NSEQ 5 EFFN 3.413086 CKSUM 238757557 STATS LOCAL MSV -7.3971 0.71933 STATS LOCAL VITERBI -7.6738 0.71933 STATS LOCAL FORWARD -3.6720 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.81443 1.10894 1.07074 1.80542 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 0.00000 * 1 2.96731 3.61661 0.11405 3.52429 1 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 2 3.46593 0.12636 3.51399 2.85283 2 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 3 3.46593 0.12636 3.51399 2.85283 3 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 4 3.46593 0.12636 3.51399 2.85283 4 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 5 2.96731 3.61661 0.11405 3.52429 5 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 6 0.13819 3.40877 2.82041 3.31315 6 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 7 0.13819 3.40877 2.82041 3.31315 7 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 8 2.96731 3.61661 0.11405 3.52429 8 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 9 3.46593 0.12636 3.51399 2.85283 9 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 10 3.46593 0.12636 3.51399 2.85283 10 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 11 3.11748 2.61349 3.16453 0.17409 11 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 12 3.11748 2.61349 3.16453 0.17409 12 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 13 0.13819 3.40877 2.82041 3.31315 13 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 14 2.13860 2.15474 1.21038 0.75894 14 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 15 2.96731 3.61661 0.11405 3.52429 15 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 16 2.96731 3.61661 0.11405 3.52429 16 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 17 2.45133 0.72657 2.52364 1.04957 17 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 18 3.46593 0.12636 3.51399 2.85283 18 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 19 2.96731 3.61661 0.11405 3.52429 19 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 20 0.13819 3.40877 2.82041 3.31315 20 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 21 2.96731 3.61661 0.11405 3.52429 21 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 22 2.96731 3.61661 0.11405 3.52429 22 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 23 2.96731 3.61661 0.11405 3.52429 23 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 24 3.46593 0.12636 3.51399 2.85283 24 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 25 0.13819 3.40877 2.82041 3.31315 25 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 26 3.46593 0.12636 3.51399 2.85283 26 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 27 2.96731 3.61661 0.11405 3.52429 27 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 28 2.46209 1.18607 2.53225 0.63517 28 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 29 3.46593 0.12636 3.51399 2.85283 29 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 30 3.11748 2.61349 3.16453 0.17409 30 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 31 2.96731 3.61661 0.11405 3.52429 31 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 32 3.46593 0.12636 3.51399 2.85283 32 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 33 3.46593 0.12636 3.51399 2.85283 33 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 34 3.11748 2.61349 3.16453 0.17409 34 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 35 2.96731 3.61661 0.11405 3.52429 35 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 36 2.96731 3.61661 0.11405 3.52429 36 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 37 2.96731 3.61661 0.11405 3.52429 37 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 38 3.46593 0.12636 3.51399 2.85283 38 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 39 2.96731 3.61661 0.11405 3.52429 39 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 40 3.11748 2.61349 3.16453 0.17409 40 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 41 3.46593 0.12636 3.51399 2.85283 41 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 42 0.13819 3.40877 2.82041 3.31315 42 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 43 3.46593 0.12636 3.51399 2.85283 43 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 44 2.96731 3.61661 0.11405 3.52429 44 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 45 3.46593 0.12636 3.51399 2.85283 45 - - 1.38629 1.38629 1.38629 1.38629 0.01831 4.00971 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_thirteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:58:21 2012 NSEQ 14 EFFN 3.250488 CKSUM 2478405586 STATS LOCAL MSV -8.0795 0.71932 STATS LOCAL VITERBI -7.7238 0.71932 STATS LOCAL FORWARD -3.7587 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.03469 1.11219 1.04046 1.67584 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 0.00000 * 1 2.93114 3.56396 0.11980 3.46618 1 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 2 3.40613 0.13347 3.45673 2.80932 2 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 3 3.40613 0.13347 3.45673 2.80932 3 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 4 3.40613 0.13347 3.45673 2.80932 4 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 5 2.93114 3.56396 0.11980 3.46618 5 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 6 0.14502 3.35687 2.78670 3.25633 6 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 7 2.93114 3.56396 0.11980 3.46618 7 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 8 2.93114 3.56396 0.11980 3.46618 8 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 9 3.40613 0.13347 3.45673 2.80932 9 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 10 3.40613 0.13347 3.45673 2.80932 10 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 11 3.06506 2.58015 3.11411 0.18252 11 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 12 3.40613 0.13347 3.45673 2.80932 12 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 13 1.67950 0.50222 2.40121 2.13927 13 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 14 3.06506 2.58015 3.11411 0.18252 14 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 15 2.93114 3.56396 0.11980 3.46618 15 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 16 2.93114 3.56396 0.11980 3.46618 16 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 17 2.62030 1.64607 2.68493 0.40618 17 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 18 3.40613 0.13347 3.45673 2.80932 18 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 19 2.93114 3.56396 0.11980 3.46618 19 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 20 0.14502 3.35687 2.78670 3.25633 20 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 21 2.93114 3.56396 0.11980 3.46618 21 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 22 2.93114 3.56396 0.11980 3.46618 22 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 23 2.93114 3.56396 0.11980 3.46618 23 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 24 3.40613 0.13347 3.45673 2.80932 24 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 25 0.14502 3.35687 2.78670 3.25633 25 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 26 3.40613 0.13347 3.45673 2.80932 26 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 27 2.93114 3.56396 0.11980 3.46618 27 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 28 3.06506 2.58015 3.11411 0.18252 28 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 29 3.40613 0.13347 3.45673 2.80932 29 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 30 3.06506 2.58015 3.11411 0.18252 30 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 31 2.93114 3.56396 0.11980 3.46618 31 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 32 3.40613 0.13347 3.45673 2.80932 32 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 33 3.40613 0.13347 3.45673 2.80932 33 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 34 3.06506 2.58015 3.11411 0.18252 34 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 35 2.93114 3.56396 0.11980 3.46618 35 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 36 2.93114 3.56396 0.11980 3.46618 36 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 37 2.93114 3.56396 0.11980 3.46618 37 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 38 3.06506 2.58015 3.11411 0.18252 38 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 39 2.93114 3.56396 0.11980 3.46618 39 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 40 3.06506 2.58015 3.11411 0.18252 40 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 41 3.40613 0.13347 3.45673 2.80932 41 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 42 0.14502 3.35687 2.78670 3.25633 42 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 43 3.40613 0.13347 3.45673 2.80932 43 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 44 2.93114 3.56396 0.11980 3.46618 44 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 45 3.40613 0.13347 3.45673 2.80932 45 - - 1.38629 1.38629 1.38629 1.38629 0.01887 3.97977 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_thirty_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:08:56 2012 NSEQ 33 EFFN 3.452271 CKSUM 3012843748 STATS LOCAL MSV -7.5469 0.71933 STATS LOCAL VITERBI -7.9147 0.71933 STATS LOCAL FORWARD -3.6482 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.70070 1.09199 1.06893 1.97677 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 0.00000 * 1 3.47984 0.12477 3.52729 2.86289 1 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 2 2.97564 3.62879 0.11277 3.53776 2 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 3 3.47984 0.12477 3.52729 2.86289 3 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 4 3.47984 0.12477 3.52729 2.86289 4 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 5 3.47984 0.12477 3.52729 2.86289 5 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 6 2.97564 3.62879 0.11277 3.53776 6 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 7 0.13665 3.42087 2.82823 3.32641 7 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 8 2.97564 3.62879 0.11277 3.53776 8 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 9 2.97564 3.62879 0.11277 3.53776 9 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 10 2.97564 3.62879 0.11277 3.53776 10 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 11 0.13665 3.42087 2.82823 3.32641 11 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 12 2.42773 0.91647 2.49970 0.84461 12 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 13 3.47984 0.12477 3.52729 2.86289 13 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 14 1.95486 0.41962 2.53145 2.10723 14 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 15 2.11863 2.15518 1.09102 0.84852 15 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 16 3.47984 0.12477 3.52729 2.86289 16 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 17 3.47984 0.12477 3.52729 2.86289 17 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 18 3.47984 0.12477 3.52729 2.86289 18 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 19 2.52351 3.40230 0.16305 3.29746 19 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 20 0.13665 3.42087 2.82823 3.32641 20 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 21 2.97564 3.62879 0.11277 3.53776 21 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 22 2.97564 3.62879 0.11277 3.53776 22 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 23 2.97564 3.62879 0.11277 3.53776 23 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 24 3.47984 0.12477 3.52729 2.86289 24 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 25 0.13665 3.42087 2.82823 3.32641 25 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 26 3.47984 0.12477 3.52729 2.86289 26 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 27 2.97564 3.62879 0.11277 3.53776 27 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 28 3.47984 0.12477 3.52729 2.86289 28 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 29 3.47984 0.12477 3.52729 2.86289 29 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 30 3.12979 2.62130 3.17636 0.17218 30 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 31 2.97564 3.62879 0.11277 3.53776 31 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 32 3.47984 0.12477 3.52729 2.86289 32 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 33 3.47984 0.12477 3.52729 2.86289 33 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 34 3.12979 2.62130 3.17636 0.17218 34 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 35 2.97564 3.62879 0.11277 3.53776 35 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 36 2.97564 3.62879 0.11277 3.53776 36 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 37 2.97564 3.62879 0.11277 3.53776 37 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 38 3.47984 0.12477 3.52729 2.86289 38 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 39 2.97564 3.62879 0.11277 3.53776 39 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 40 3.12979 2.62130 3.17636 0.17218 40 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 41 2.37199 2.46336 2.81060 0.27261 41 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 42 0.13665 3.42087 2.82823 3.32641 42 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 43 2.97564 3.62879 0.11277 3.53776 43 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 44 0.13665 3.42087 2.82823 3.32641 44 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03464 4.03464 1.46634 0.26236 1.09861 0.40547 45 0.13665 3.42087 2.82823 3.32641 45 - - 1.38629 1.38629 1.38629 1.38629 0.01817 4.01679 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_thirtyfive_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:11:30 2012 NSEQ 3 EFFN 3.000000 CKSUM 526989836 STATS LOCAL MSV -7.9616 0.72013 STATS LOCAL VITERBI -7.8039 0.72013 STATS LOCAL FORWARD -4.0636 0.72013 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.63091 1.26577 1.25759 1.43595 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.86982 3.47591 0.13017 3.36931 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.97980 2.52563 3.03204 0.19727 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 0.15719 3.27118 2.73043 3.16274 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.15719 3.27118 2.73043 3.16274 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.97980 2.52563 3.03204 0.19727 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.97980 2.52563 3.03204 0.19727 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.97980 2.52563 3.03204 0.19727 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.30705 0.14631 3.36166 2.73626 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.15719 3.27118 2.73043 3.16274 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.97980 2.52563 3.03204 0.19727 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 3.30705 0.14631 3.36166 2.73626 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.30705 0.14631 3.36166 2.73626 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.30705 0.14631 3.36166 2.73626 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 0.15719 3.27118 2.73043 3.16274 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.97980 2.52563 3.03204 0.19727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_thirtyfoura_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:11:05 2012 NSEQ 31 EFFN 3.576050 CKSUM 1110488480 STATS LOCAL MSV -7.3906 0.71932 STATS LOCAL VITERBI -7.7243 0.71932 STATS LOCAL FORWARD -4.1047 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.73194 1.44969 1.07683 1.39536 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 0.00000 * 1 3.00104 3.66608 0.10894 3.57903 1 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 2 3.52251 0.12003 3.56809 2.89364 2 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 3 0.41720 2.55354 2.39138 1.76141 3 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 4 3.52251 0.12003 3.56809 2.89364 4 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 5 3.00104 3.66608 0.10894 3.57903 5 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 6 0.13204 3.45806 2.85223 3.36719 6 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 7 3.00104 3.66608 0.10894 3.57903 7 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 8 3.00104 3.66608 0.10894 3.57903 8 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 9 3.52251 0.12003 3.56809 2.89364 9 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 10 3.52251 0.12003 3.56809 2.89364 10 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 11 0.13204 3.45806 2.85223 3.36719 11 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 12 3.16784 2.64544 3.21293 0.16642 12 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 13 3.16784 2.64544 3.21293 0.16642 13 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 14 0.13204 3.45806 2.85223 3.36719 14 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 15 3.00104 3.66608 0.10894 3.57903 15 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 16 3.00104 3.66608 0.10894 3.57903 16 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 17 3.04861 2.35479 3.09836 0.20759 17 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 18 3.52251 0.12003 3.56809 2.89364 18 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 19 2.53822 3.43935 0.15855 3.33746 19 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 20 0.13204 3.45806 2.85223 3.36719 20 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 21 3.00104 3.66608 0.10894 3.57903 21 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 22 1.82346 2.21809 2.09443 0.49992 22 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 23 3.00104 3.66608 0.10894 3.57903 23 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 24 3.52251 0.12003 3.56809 2.89364 24 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 25 0.13204 3.45806 2.85223 3.36719 25 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 26 3.28078 0.17413 3.33457 2.44665 26 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 27 3.00104 3.66608 0.10894 3.57903 27 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 28 3.16784 2.64544 3.21293 0.16642 28 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 29 3.52251 0.12003 3.56809 2.89364 29 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 30 3.16784 2.64544 3.21293 0.16642 30 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 31 3.00104 3.66608 0.10894 3.57903 31 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 32 3.04861 2.35479 3.09836 0.20759 32 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 33 3.16784 2.64544 3.21293 0.16642 33 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 34 3.16784 2.64544 3.21293 0.16642 34 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 35 3.00104 3.66608 0.10894 3.57903 35 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 36 3.00104 3.66608 0.10894 3.57903 36 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 37 3.00104 3.66608 0.10894 3.57903 37 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 38 3.28078 0.17413 3.33457 2.44665 38 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 39 3.00104 3.66608 0.10894 3.57903 39 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 40 3.16784 2.64544 3.21293 0.16642 40 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 41 3.52251 0.12003 3.56809 2.89364 41 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 42 0.13204 3.45806 2.85223 3.36719 42 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 43 3.16784 2.64544 3.21293 0.16642 43 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 44 3.00104 3.66608 0.10894 3.57903 44 - - 1.38629 1.38629 1.38629 1.38629 0.03524 4.05630 4.05630 1.46634 0.26236 1.09861 0.40547 45 2.75448 1.75873 2.81555 0.35066 45 - - 1.38629 1.38629 1.38629 1.38629 0.01777 4.03884 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_thirtyfourb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:11:12 2012 NSEQ 2 EFFN 2.000000 CKSUM 3980991935 STATS LOCAL MSV -7.5533 0.72716 STATS LOCAL VITERBI -8.1522 0.72716 STATS LOCAL FORWARD -3.3295 0.72716 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.59501 1.20164 1.16801 1.68520 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.57915 2.25909 2.64442 0.28946 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.23862 2.84929 2.43386 2.70756 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.23862 2.84929 2.43386 2.70756 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_thirtyfourc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:11:18 2012 NSEQ 2 EFFN 2.000000 CKSUM 2098883129 STATS LOCAL MSV -7.5674 0.72732 STATS LOCAL VITERBI -8.2900 0.72732 STATS LOCAL FORWARD -3.4224 0.72732 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.58991 1.35237 1.11830 1.55782 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_thirtyone_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:09:07 2012 NSEQ 173 EFFN 3.861984 CKSUM 63343949 STATS LOCAL MSV -7.1647 0.71933 STATS LOCAL VITERBI -7.8521 0.71933 STATS LOCAL FORWARD -3.4105 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.98184 1.01410 1.02688 1.95663 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 0.00000 * 1 3.05490 3.74564 0.10125 3.66724 1 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 2 3.61417 0.11054 3.65561 2.95909 2 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 3 3.55107 0.12280 3.59487 2.82348 3 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 4 3.51251 0.13063 3.55781 2.74676 4 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 5 3.05490 3.74564 0.10125 3.66724 5 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 6 0.12267 3.53838 2.90385 3.45540 6 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 7 3.05490 3.74564 0.10125 3.66724 7 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 8 2.65459 3.36410 0.16732 3.01286 8 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 9 3.53248 0.12654 3.57701 2.78601 9 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 10 3.55272 0.12247 3.59646 2.82687 10 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 11 0.57727 2.28575 2.27808 1.45075 11 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 12 2.53138 1.12398 2.60080 0.65152 12 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 13 2.57887 1.26595 2.64667 0.55987 13 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 14 2.41793 0.66381 2.38111 1.19218 14 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 15 3.05490 3.74564 0.10125 3.66724 15 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 16 3.05490 3.74564 0.10125 3.66724 16 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 17 2.99017 0.28407 3.05277 1.89859 17 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 18 2.95520 0.29957 3.01868 1.84559 18 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 19 2.88765 3.67807 0.11477 3.59523 19 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 20 0.12267 3.53838 2.90385 3.45540 20 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 21 3.05490 3.74564 0.10125 3.66724 21 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 22 3.05490 3.74564 0.10125 3.66724 22 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 23 3.05490 3.74564 0.10125 3.66724 23 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 24 3.61417 0.11054 3.65561 2.95909 24 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 25 0.12267 3.53838 2.90385 3.45540 25 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 26 3.55229 0.12255 3.59605 2.82599 26 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 27 3.05490 3.74564 0.10125 3.66724 27 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 28 3.09504 0.24308 3.15479 2.05671 28 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 29 3.61417 0.11054 3.65561 2.95909 29 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 30 3.20860 2.58338 3.25216 0.16797 30 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 31 3.00222 3.63096 0.11692 3.37623 31 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 32 3.61417 0.11054 3.65561 2.95909 32 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 33 3.51186 0.13076 3.55719 2.74552 33 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 34 3.25118 2.69828 3.29301 0.15454 34 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 35 3.05490 3.74564 0.10125 3.66724 35 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 36 3.05490 3.74564 0.10125 3.66724 36 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 37 3.05490 3.74564 0.10125 3.66724 37 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 38 3.54985 0.12304 3.59370 2.82100 38 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 39 3.05490 3.74564 0.10125 3.66724 39 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 40 3.25118 2.69828 3.29301 0.15454 40 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 41 3.61417 0.11054 3.65561 2.95909 41 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 42 0.12267 3.53838 2.90385 3.45540 42 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 43 3.61417 0.11054 3.65561 2.95909 43 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 44 3.05490 3.74564 0.10125 3.66724 44 - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10462 4.10462 1.46634 0.26236 1.09861 0.40547 45 3.61417 0.11054 3.65561 2.95909 45 - - 1.38629 1.38629 1.38629 1.38629 0.01692 4.08799 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_thirtyseven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:11:43 2012 NSEQ 2 EFFN 2.000000 CKSUM 52418213 STATS LOCAL MSV -7.4325 0.72761 STATS LOCAL VITERBI -8.1937 0.72761 STATS LOCAL FORWARD -3.7303 0.72761 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.66301 1.34714 1.16496 1.43333 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.53331 3.02441 0.20344 2.88069 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.23862 2.84929 2.43386 2.70756 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23862 2.84929 2.43386 2.70756 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.57915 2.25909 2.64442 0.28946 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.57915 2.25909 2.64442 0.28946 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_thirtythreea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:09:29 2012 NSEQ 18 EFFN 3.783691 CKSUM 550039999 STATS LOCAL MSV -6.9143 0.71933 STATS LOCAL VITERBI -7.6760 0.71933 STATS LOCAL FORWARD -3.7559 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.04129 1.19714 1.03285 1.55075 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 0.00000 * 1 3.04077 3.72472 0.10321 3.64403 1 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 2 3.58999 0.11296 3.63254 2.94190 2 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 3 3.58999 0.11296 3.63254 2.94190 3 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 4 2.62908 1.41927 2.69499 0.48058 4 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 5 3.04077 3.72472 0.10321 3.64403 5 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 6 0.12508 3.51713 2.89021 3.43205 6 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 7 3.04077 3.72472 0.10321 3.64403 7 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 8 3.04077 3.72472 0.10321 3.64403 8 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 9 3.58999 0.11296 3.63254 2.94190 9 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 10 3.58999 0.11296 3.63254 2.94190 10 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 11 3.22897 2.68419 3.27168 0.15761 11 - - 1.38629 1.38629 1.38629 1.38629 0.18717 4.09162 1.87089 1.46634 0.26236 1.09861 0.40547 12 2.37027 0.74634 2.44366 1.06246 12 - - 1.38629 1.38629 1.38629 1.38629 0.03951 3.94396 3.94396 1.46634 0.26236 0.19644 1.72402 13 2.90813 1.96059 2.96416 0.28363 13 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 14 3.22897 2.68419 3.27168 0.15761 14 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 15 3.04077 3.72472 0.10321 3.64403 15 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 16 3.04077 3.72472 0.10321 3.64403 16 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 17 2.90813 1.96059 2.96416 0.28363 17 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 18 2.48587 0.87739 2.55718 0.85954 18 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 19 3.04077 3.72472 0.10321 3.64403 19 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 20 0.12508 3.51713 2.89021 3.43205 20 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 21 1.83922 3.03603 0.30309 2.90955 21 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 22 3.04077 3.72472 0.10321 3.64403 22 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 23 3.04077 3.72472 0.10321 3.64403 23 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 24 3.58999 0.11296 3.63254 2.94190 24 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 25 0.12508 3.51713 2.89021 3.43205 25 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 26 3.58999 0.11296 3.63254 2.94190 26 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 27 3.04077 3.72472 0.10321 3.64403 27 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 28 3.22897 2.68419 3.27168 0.15761 28 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 29 3.58999 0.11296 3.63254 2.94190 29 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 30 3.22897 2.68419 3.27168 0.15761 30 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 31 3.04077 3.72472 0.10321 3.64403 31 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 32 3.58999 0.11296 3.63254 2.94190 32 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 33 3.07424 0.24642 3.13451 2.05058 33 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 34 3.22897 2.68419 3.27168 0.15761 34 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 35 3.04077 3.72472 0.10321 3.64403 35 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 36 3.04077 3.72472 0.10321 3.64403 36 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 37 3.04077 3.72472 0.10321 3.64403 37 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 38 3.58999 0.11296 3.63254 2.94190 38 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 39 3.04077 3.72472 0.10321 3.64403 39 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 40 3.22897 2.68419 3.27168 0.15761 40 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 41 3.58999 0.11296 3.63254 2.94190 41 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 42 0.12508 3.51713 2.89021 3.43205 42 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 43 3.58999 0.11296 3.63254 2.94190 43 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 44 3.04077 3.72472 0.10321 3.64403 44 - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 45 3.14070 0.22357 3.19904 2.15167 45 - - 1.38629 1.38629 1.38629 1.38629 0.01714 4.07477 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_thirtythreeb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:09:37 2012 NSEQ 11 EFFN 3.112549 CKSUM 3927138524 STATS LOCAL MSV -8.3070 0.71933 STATS LOCAL VITERBI -7.8443 0.71933 STATS LOCAL FORWARD -3.5924 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.85214 1.06036 1.04445 1.93184 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 0.00000 * 1 2.89827 3.51656 0.12526 3.41398 1 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 2 3.35264 0.14023 3.40543 2.77003 2 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 3 3.35264 0.14023 3.40543 2.77003 3 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 4 3.35264 0.14023 3.40543 2.77003 4 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 5 2.89827 3.51656 0.12526 3.41398 5 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 6 0.15146 3.31057 2.75641 3.20573 6 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 7 2.89827 3.51656 0.12526 3.41398 7 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 8 2.89827 3.51656 0.12526 3.41398 8 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 9 3.35264 0.14023 3.40543 2.77003 9 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 10 3.35264 0.14023 3.40543 2.77003 10 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 11 0.43962 2.47168 2.31836 1.75538 11 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 12 3.35264 0.14023 3.40543 2.77003 12 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 13 3.01880 2.55062 3.06959 0.19035 13 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 14 0.15146 3.31057 2.75641 3.20573 14 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 15 2.89827 3.51656 0.12526 3.41398 15 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 16 2.89827 3.51656 0.12526 3.41398 16 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 17 3.01880 2.55062 3.06959 0.19035 17 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 18 3.35264 0.14023 3.40543 2.77003 18 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 19 2.89827 3.51656 0.12526 3.41398 19 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 20 0.15146 3.31057 2.75641 3.20573 20 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 21 2.89827 3.51656 0.12526 3.41398 21 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 22 2.89827 3.51656 0.12526 3.41398 22 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 23 2.89827 3.51656 0.12526 3.41398 23 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 24 3.35264 0.14023 3.40543 2.77003 24 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 25 0.15146 3.31057 2.75641 3.20573 25 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 26 3.35264 0.14023 3.40543 2.77003 26 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 27 2.89827 3.51656 0.12526 3.41398 27 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 28 3.35264 0.14023 3.40543 2.77003 28 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 29 3.35264 0.14023 3.40543 2.77003 29 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 30 3.01880 2.55062 3.06959 0.19035 30 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 31 2.89827 3.51656 0.12526 3.41398 31 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 32 3.35264 0.14023 3.40543 2.77003 32 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 33 3.35264 0.14023 3.40543 2.77003 33 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 34 3.01880 2.55062 3.06959 0.19035 34 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 35 2.89827 3.51656 0.12526 3.41398 35 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 36 2.89827 3.51656 0.12526 3.41398 36 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 37 2.89827 3.51656 0.12526 3.41398 37 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 38 3.35264 0.14023 3.40543 2.77003 38 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 39 2.89827 3.51656 0.12526 3.41398 39 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 40 3.01880 2.55062 3.06959 0.19035 40 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 41 3.35264 0.14023 3.40543 2.77003 41 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 42 0.15146 3.31057 2.75641 3.20573 42 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 43 3.35264 0.14023 3.40543 2.77003 43 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 44 2.89827 3.51656 0.12526 3.41398 44 - - 1.38629 1.38629 1.38629 1.38629 0.03837 3.97266 3.97266 1.46634 0.26236 1.09861 0.40547 45 3.35264 0.14023 3.40543 2.77003 45 - - 1.38629 1.38629 1.38629 1.38629 0.01937 3.95365 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_thirtythreec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:10:01 2012 NSEQ 2 EFFN 2.000000 CKSUM 2397806016 STATS LOCAL MSV -7.4839 0.72750 STATS LOCAL VITERBI -8.2729 0.72750 STATS LOCAL FORWARD -3.2715 0.72750 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.66442 1.29311 1.16721 1.49143 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.23862 2.84929 2.43386 2.70756 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.23862 2.84929 2.43386 2.70756 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_thirtythreed_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:10:10 2012 NSEQ 2 EFFN 2.000000 CKSUM 344474445 STATS LOCAL MSV -7.3987 0.72853 STATS LOCAL VITERBI -8.1953 0.72853 STATS LOCAL FORWARD -3.3486 0.72853 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.58413 1.25576 1.21039 1.55149 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.15554 1.00938 2.23102 0.88601 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.15554 1.00938 2.23102 0.88601 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_thirtythreee_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:10:27 2012 NSEQ 2 EFFN 2.000000 CKSUM 3848995925 STATS LOCAL MSV -7.4459 0.72796 STATS LOCAL VITERBI -8.2472 0.72796 STATS LOCAL FORWARD -3.2509 0.72796 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.56353 1.28022 1.16180 1.61092 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.23862 2.84929 2.43386 2.70756 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.53331 3.02441 0.20344 2.88069 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23862 2.84929 2.43386 2.70756 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 1.01448 1.11006 1.95471 1.79419 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_thirtythreef_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:10:35 2012 NSEQ 2 EFFN 2.000000 CKSUM 2055483089 STATS LOCAL MSV -7.5686 0.72740 STATS LOCAL VITERBI -8.0498 0.72740 STATS LOCAL FORWARD -3.3915 0.72740 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.52192 1.35165 1.16450 1.55678 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.23862 2.84929 2.43386 2.70756 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.23862 2.84929 2.43386 2.70756 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23862 2.84929 2.43386 2.70756 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.53331 3.02441 0.20344 2.88069 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_thirtytwo_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:09:18 2012 NSEQ 17 EFFN 3.357666 CKSUM 685826610 STATS LOCAL MSV -8.2223 0.71932 STATS LOCAL VITERBI -7.8316 0.71932 STATS LOCAL FORWARD -4.1028 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.73227 1.24820 1.13451 1.53936 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 0.00000 * 1 2.95528 3.59904 0.11593 3.50489 1 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 2 3.44594 0.12869 3.49485 2.83833 2 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 3 3.44594 0.12869 3.49485 2.83833 3 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 4 3.44594 0.12869 3.49485 2.83833 4 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 5 2.95528 3.59904 0.11593 3.50489 5 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 6 0.14043 3.39140 2.80915 3.29412 6 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 7 2.95528 3.59904 0.11593 3.50489 7 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 8 2.95528 3.59904 0.11593 3.50489 8 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 9 3.44594 0.12869 3.49485 2.83833 9 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 10 3.44594 0.12869 3.49485 2.83833 10 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 11 3.09986 2.60230 3.14759 0.17687 11 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 12 3.09986 2.60230 3.14759 0.17687 12 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 13 2.55050 1.44909 2.61765 0.48744 13 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 14 3.19210 0.18897 3.24878 2.38295 14 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 15 2.95528 3.59904 0.11593 3.50489 15 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 16 2.95528 3.59904 0.11593 3.50489 16 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 17 3.09986 2.60230 3.14759 0.17687 17 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 18 3.44594 0.12869 3.49485 2.83833 18 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 19 2.95528 3.59904 0.11593 3.50489 19 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 20 0.14043 3.39140 2.80915 3.29412 20 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 21 2.95528 3.59904 0.11593 3.50489 21 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 22 2.95528 3.59904 0.11593 3.50489 22 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 23 2.95528 3.59904 0.11593 3.50489 23 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 24 3.44594 0.12869 3.49485 2.83833 24 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 25 0.14043 3.39140 2.80915 3.29412 25 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 26 3.44594 0.12869 3.49485 2.83833 26 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 27 0.14043 3.39140 2.80915 3.29412 27 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 28 3.09986 2.60230 3.14759 0.17687 28 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 29 3.44594 0.12869 3.49485 2.83833 29 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 30 3.09986 2.60230 3.14759 0.17687 30 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 31 2.95528 3.59904 0.11593 3.50489 31 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 32 3.44594 0.12869 3.49485 2.83833 32 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 33 3.09986 2.60230 3.14759 0.17687 33 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 34 3.09986 2.60230 3.14759 0.17687 34 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 35 2.95528 3.59904 0.11593 3.50489 35 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 36 2.95528 3.59904 0.11593 3.50489 36 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 37 2.95528 3.59904 0.11593 3.50489 37 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 38 3.44594 0.12869 3.49485 2.83833 38 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 39 2.95528 3.59904 0.11593 3.50489 39 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 40 3.09986 2.60230 3.14759 0.17687 40 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 41 2.71645 1.78494 2.77818 0.35107 41 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 42 0.24390 3.06038 2.14653 2.94357 42 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 43 0.14043 3.39140 2.80915 3.29412 43 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 44 0.14043 3.39140 2.80915 3.29412 44 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 45 3.44594 0.12869 3.49485 2.83833 45 - - 1.38629 1.38629 1.38629 1.38629 0.01849 3.99961 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:55:32 2012 NSEQ 13 EFFN 3.081787 CKSUM 3827031248 STATS LOCAL MSV -8.2836 0.71932 STATS LOCAL VITERBI -7.6501 0.71932 STATS LOCAL FORWARD -3.8247 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.82182 1.10900 1.09622 1.74728 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 0.00000 * 1 2.89064 3.50563 0.12656 3.40196 1 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 2 3.34036 0.14184 3.39364 2.76096 2 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 3 3.34036 0.14184 3.39364 2.76096 3 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 4 3.34036 0.14184 3.39364 2.76096 4 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 5 2.89064 3.50563 0.12656 3.40196 5 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 6 0.15298 3.29995 2.74942 3.19413 6 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 7 0.15298 3.29995 2.74942 3.19413 7 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 8 2.89064 3.50563 0.12656 3.40196 8 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 9 3.34036 0.14184 3.39364 2.76096 9 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 10 3.34036 0.14184 3.39364 2.76096 10 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 11 3.00825 2.54387 3.05944 0.19219 11 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 12 3.34036 0.14184 3.39364 2.76096 12 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 13 3.00825 2.54387 3.05944 0.19219 13 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 14 0.15298 3.29995 2.74942 3.19413 14 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 15 2.89064 3.50563 0.12656 3.40196 15 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 16 2.89064 3.50563 0.12656 3.40196 16 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 17 3.34036 0.14184 3.39364 2.76096 17 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 18 3.00825 2.54387 3.05944 0.19219 18 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 19 2.89064 3.50563 0.12656 3.40196 19 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 20 0.15298 3.29995 2.74942 3.19413 20 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 21 2.89064 3.50563 0.12656 3.40196 21 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 22 2.89064 3.50563 0.12656 3.40196 22 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 23 2.89064 3.50563 0.12656 3.40196 23 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 24 3.34036 0.14184 3.39364 2.76096 24 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 25 0.15298 3.29995 2.74942 3.19413 25 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 26 3.34036 0.14184 3.39364 2.76096 26 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 27 2.89064 3.50563 0.12656 3.40196 27 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 28 3.00825 2.54387 3.05944 0.19219 28 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 29 3.34036 0.14184 3.39364 2.76096 29 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 30 3.00825 2.54387 3.05944 0.19219 30 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 31 2.89064 3.50563 0.12656 3.40196 31 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 32 3.34036 0.14184 3.39364 2.76096 32 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 33 3.34036 0.14184 3.39364 2.76096 33 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 34 3.00825 2.54387 3.05944 0.19219 34 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 35 2.89064 3.50563 0.12656 3.40196 35 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 36 2.89064 3.50563 0.12656 3.40196 36 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 37 2.89064 3.50563 0.12656 3.40196 37 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 38 3.34036 0.14184 3.39364 2.76096 38 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 39 2.89064 3.50563 0.12656 3.40196 39 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 40 3.00825 2.54387 3.05944 0.19219 40 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 41 3.34036 0.14184 3.39364 2.76096 41 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 42 0.15298 3.29995 2.74942 3.19413 42 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 43 3.34036 0.14184 3.39364 2.76096 43 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 44 2.89064 3.50563 0.12656 3.40196 44 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96685 3.96685 1.46634 0.26236 1.09861 0.40547 45 3.34036 0.14184 3.39364 2.76096 45 - - 1.38629 1.38629 1.38629 1.38629 0.01949 3.94774 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twelve_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:57:55 2012 NSEQ 23 EFFN 3.697632 CKSUM 3343583042 STATS LOCAL MSV -7.2508 0.71933 STATS LOCAL VITERBI -7.6026 0.71933 STATS LOCAL FORWARD -3.9055 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.75713 1.13224 1.13965 1.68621 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 0.00000 * 1 3.02472 3.70099 0.10549 3.61771 1 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 2 3.56263 0.11577 3.60642 2.92238 2 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 3 3.56263 0.11577 3.60642 2.92238 3 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 4 3.56263 0.11577 3.60642 2.92238 4 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 5 3.02472 3.70099 0.10549 3.61771 5 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 6 0.12785 3.49313 2.87479 3.40569 6 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 7 0.12785 3.49313 2.87479 3.40569 7 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 8 3.02472 3.70099 0.10549 3.61771 8 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 9 3.56263 0.11577 3.60642 2.92238 9 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 10 3.56263 0.11577 3.60642 2.92238 10 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 11 0.65686 2.30315 2.24844 1.28730 11 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 12 3.20403 2.66838 3.24772 0.16114 12 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 13 3.02224 0.26115 3.08388 1.99983 13 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 14 2.89152 0.31846 2.95642 1.80037 14 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 15 3.02472 3.70099 0.10549 3.61771 15 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 16 3.02472 3.70099 0.10549 3.61771 16 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 17 2.58153 1.35406 2.64872 0.51850 17 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 18 2.95974 2.10353 3.01346 0.25229 18 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 19 1.88853 3.05068 0.29074 2.92499 19 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 20 0.12785 3.49313 2.87479 3.40569 20 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 21 3.02472 3.70099 0.10549 3.61771 21 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 22 3.02472 3.70099 0.10549 3.61771 22 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 23 3.02472 3.70099 0.10549 3.61771 23 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 24 3.56263 0.11577 3.60642 2.92238 24 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 25 0.12785 3.49313 2.87479 3.40569 25 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 26 2.58153 1.35406 2.64872 0.51850 26 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 27 3.02472 3.70099 0.10549 3.61771 27 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 28 3.20403 2.66838 3.24772 0.16114 28 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 29 3.56263 0.11577 3.60642 2.92238 29 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 30 3.20403 2.66838 3.24772 0.16114 30 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 31 3.02472 3.70099 0.10549 3.61771 31 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 32 3.56263 0.11577 3.60642 2.92238 32 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 33 3.56263 0.11577 3.60642 2.92238 33 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 34 3.20403 2.66838 3.24772 0.16114 34 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 35 3.02472 3.70099 0.10549 3.61771 35 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 36 3.02472 3.70099 0.10549 3.61771 36 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 37 3.02472 3.70099 0.10549 3.61771 37 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 38 3.56263 0.11577 3.60642 2.92238 38 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 39 3.02472 3.70099 0.10549 3.61771 39 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 40 3.20403 2.66838 3.24772 0.16114 40 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 41 3.56263 0.11577 3.60642 2.92238 41 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 42 0.12785 3.49313 2.87479 3.40569 42 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 43 3.56263 0.11577 3.60642 2.92238 43 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 44 0.12785 3.49313 2.87479 3.40569 44 - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07714 4.07714 1.46634 0.26236 1.09861 0.40547 45 3.56263 0.11577 3.60642 2.92238 45 - - 1.38629 1.38629 1.38629 1.38629 0.01740 4.06003 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentya_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:03:14 2012 NSEQ 6 EFFN 3.178711 CKSUM 3928551301 STATS LOCAL MSV -8.3552 0.71933 STATS LOCAL VITERBI -7.9466 0.71933 STATS LOCAL FORWARD -3.4318 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.92867 1.00410 1.04349 1.99465 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 0.00000 * 1 2.91430 3.53962 0.12257 3.43936 1 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 2 3.37862 0.13690 3.43035 2.78916 2 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 3 3.37862 0.13690 3.43035 2.78916 3 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 4 3.37862 0.13690 3.43035 2.78916 4 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 5 2.37921 0.95205 2.45172 0.83176 5 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 6 0.14829 3.33304 2.77114 3.23028 6 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 7 2.91430 3.53962 0.12257 3.43936 7 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 8 2.91430 3.53962 0.12257 3.43936 8 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 9 3.37862 0.13690 3.43035 2.78916 9 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 10 3.37862 0.13690 3.43035 2.78916 10 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 11 2.91430 3.53962 0.12257 3.43936 11 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 12 3.04119 2.56493 3.09115 0.18651 12 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 13 3.37862 0.13690 3.43035 2.78916 13 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 14 0.14829 3.33304 2.77114 3.23028 14 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 15 2.91430 3.53962 0.12257 3.43936 15 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 16 2.91430 3.53962 0.12257 3.43936 16 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 17 2.79199 0.32979 2.85893 1.81835 17 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 18 3.37862 0.13690 3.43035 2.78916 18 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 19 2.91430 3.53962 0.12257 3.43936 19 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 20 0.14829 3.33304 2.77114 3.23028 20 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 21 2.91430 3.53962 0.12257 3.43936 21 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 22 2.91430 3.53962 0.12257 3.43936 22 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 23 2.91430 3.53962 0.12257 3.43936 23 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 24 3.37862 0.13690 3.43035 2.78916 24 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 25 0.14829 3.33304 2.77114 3.23028 25 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 26 3.37862 0.13690 3.43035 2.78916 26 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 27 2.91430 3.53962 0.12257 3.43936 27 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 28 3.37862 0.13690 3.43035 2.78916 28 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 29 3.37862 0.13690 3.43035 2.78916 29 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 30 3.04119 2.56493 3.09115 0.18651 30 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 31 2.91430 3.53962 0.12257 3.43936 31 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 32 3.37862 0.13690 3.43035 2.78916 32 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 33 3.37862 0.13690 3.43035 2.78916 33 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 34 3.04119 2.56493 3.09115 0.18651 34 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 35 2.91430 3.53962 0.12257 3.43936 35 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 36 2.91430 3.53962 0.12257 3.43936 36 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 37 2.91430 3.53962 0.12257 3.43936 37 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 38 3.37862 0.13690 3.43035 2.78916 38 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 39 2.91430 3.53962 0.12257 3.43936 39 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 40 3.04119 2.56493 3.09115 0.18651 40 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 41 3.37862 0.13690 3.43035 2.78916 41 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 42 0.14829 3.33304 2.77114 3.23028 42 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 43 3.37862 0.13690 3.43035 2.78916 43 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 44 2.91430 3.53962 0.12257 3.43936 44 - - 1.38629 1.38629 1.38629 1.38629 0.03789 3.98503 3.98503 1.46634 0.26236 1.09861 0.40547 45 3.37862 0.13690 3.43035 2.78916 45 - - 1.38629 1.38629 1.38629 1.38629 0.01913 3.96627 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentyb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:03:24 2012 NSEQ 331 EFFN 4.139015 CKSUM 3119287144 STATS LOCAL MSV -6.8068 0.71933 STATS LOCAL VITERBI -7.6332 0.71933 STATS LOCAL FORWARD -3.8434 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.88004 1.11445 1.11094 1.66036 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 0.00000 * 1 2.98484 3.77251 0.10347 3.69876 1 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 2 3.58373 0.11709 3.47125 2.96333 2 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 3 3.60558 0.11989 3.64702 2.81772 3 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 4 3.59530 0.12193 3.63718 2.79664 4 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 5 2.51204 3.44490 0.16604 3.21952 5 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 6 0.11500 3.60943 2.94947 3.53352 6 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 7 0.11500 3.60943 2.94947 3.53352 7 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 8 2.97178 3.76747 0.10449 3.69331 8 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 9 3.63724 0.11371 3.67733 2.88474 9 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 10 3.69453 0.10292 3.73224 3.01595 10 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 11 1.34835 2.18781 2.05143 0.69391 11 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 12 3.28125 2.61853 3.32212 0.15849 12 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 13 2.71505 1.44191 2.77923 0.45376 13 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 14 2.29898 0.84042 2.15999 1.04191 14 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 15 3.10155 3.81486 0.09505 3.74413 15 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 16 3.10155 3.81486 0.09505 3.74413 16 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 17 3.41770 0.16079 3.46689 2.47072 17 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 18 2.86277 0.19468 3.07992 2.60603 18 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 19 1.99349 3.21682 0.25020 3.09992 19 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 20 0.11500 3.60943 2.94947 3.53352 20 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 21 3.10155 3.81486 0.09505 3.74413 21 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 22 3.10155 3.81486 0.09505 3.74413 22 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 23 3.10155 3.81486 0.09505 3.74413 23 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 24 3.69453 0.10292 3.73224 3.01595 24 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 25 0.11500 3.60943 2.94947 3.53352 25 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 26 3.69453 0.10292 3.73224 3.01595 26 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 27 3.10155 3.81486 0.09505 3.74413 27 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 28 3.15346 2.30352 3.20031 0.20256 28 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 29 3.06185 0.27103 3.12281 1.92022 29 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 30 3.32628 2.74598 3.36515 0.14464 30 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 31 3.10155 3.81486 0.09505 3.74413 31 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 32 3.69453 0.10292 3.73224 3.01595 32 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 33 3.69453 0.10292 3.73224 3.01595 33 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 34 3.32628 2.74598 3.36515 0.14464 34 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 35 3.10155 3.81486 0.09505 3.74413 35 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 36 3.10155 3.81486 0.09505 3.74413 36 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 37 3.10155 3.81486 0.09505 3.74413 37 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 38 3.28884 2.63924 3.32935 0.15610 38 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 39 3.10155 3.81486 0.09505 3.74413 39 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 40 3.32628 2.74598 3.36515 0.14464 40 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 41 3.69453 0.10292 3.73224 3.01595 41 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 42 0.11500 3.60943 2.94947 3.53352 42 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 43 3.55874 0.12936 3.60218 2.72411 43 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 44 1.65203 2.17464 0.87123 1.28643 44 - - 1.38629 1.38629 1.38629 1.38629 0.03206 4.14931 4.14931 1.46634 0.26236 1.09861 0.40547 45 3.62344 0.11638 3.66411 2.85511 45 - - 1.38629 1.38629 1.38629 1.38629 0.01616 4.13341 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentyeight_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:08:23 2012 NSEQ 75 EFFN 3.941345 CKSUM 725606151 STATS LOCAL MSV -7.0112 0.71932 STATS LOCAL VITERBI -7.6002 0.71932 STATS LOCAL FORWARD -3.6299 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.99178 1.05713 1.03677 1.82326 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 0.00000 * 1 3.06877 3.76621 0.09936 3.69008 1 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 2 3.63800 0.10822 3.67835 2.97600 2 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 3 3.63800 0.10822 3.67835 2.97600 3 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 4 3.63800 0.10822 3.67835 2.97600 4 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 5 2.74031 3.44624 0.15224 3.10552 5 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 6 1.96078 3.15215 0.26363 3.03173 6 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 7 0.13630 3.49554 2.74789 3.41053 7 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 8 3.06877 3.76621 0.09936 3.69008 8 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 9 3.63800 0.10822 3.67835 2.97600 9 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 10 3.63800 0.10822 3.67835 2.97600 10 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 11 1.38932 2.16314 2.00609 0.69060 11 - - 1.38629 1.38629 1.38629 1.38629 0.10050 4.11763 2.53411 1.46634 0.26236 1.09861 0.40547 12 3.06519 2.40438 3.11421 0.20014 12 - - 1.38629 1.38629 1.38629 1.38629 0.03538 4.05250 4.05250 1.46634 0.26236 0.34394 1.23432 13 2.10122 0.84967 1.59245 1.39955 13 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 14 1.70851 1.97438 2.39563 0.52950 14 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 15 3.06877 3.76621 0.09936 3.69008 15 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 16 2.76288 2.58563 0.20594 3.04372 16 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 17 3.63800 0.10822 3.67835 2.97600 17 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 18 3.63800 0.10822 3.67835 2.97600 18 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 19 3.06877 3.76621 0.09936 3.69008 19 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 20 0.12035 3.55938 2.91733 3.47849 20 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 21 2.97532 3.27524 0.12788 3.46721 21 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 22 3.06877 3.76621 0.09936 3.69008 22 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 23 3.06877 3.76621 0.09936 3.69008 23 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 24 3.63800 0.10822 3.67835 2.97600 24 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 25 0.12035 3.55938 2.91733 3.47849 25 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 26 3.63800 0.10822 3.67835 2.97600 26 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 27 3.06877 3.76621 0.09936 3.69008 27 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 28 2.95522 1.98156 3.00992 0.27341 28 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 29 3.63800 0.10822 3.67835 2.97600 29 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 30 3.27324 2.71227 3.31420 0.15156 30 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 31 3.06877 3.76621 0.09936 3.69008 31 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 32 3.63800 0.10822 3.67835 2.97600 32 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 33 3.26436 0.19316 3.31889 2.29033 33 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 34 3.27324 2.71227 3.31420 0.15156 34 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 35 3.06877 3.76621 0.09936 3.69008 35 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 36 3.06877 3.76621 0.09936 3.69008 36 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 37 3.06877 3.76621 0.09936 3.69008 37 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 38 2.71123 0.21164 3.12806 2.51972 38 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 39 3.06877 3.76621 0.09936 3.69008 39 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 40 3.27324 2.71227 3.31420 0.15156 40 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 41 3.63800 0.10822 3.67835 2.97600 41 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 42 0.12035 3.55938 2.91733 3.47849 42 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 43 3.63800 0.10822 3.67835 2.97600 43 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 44 2.08904 3.23944 0.23189 3.12420 44 - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11763 4.11763 1.46634 0.26236 1.09861 0.40547 45 3.63800 0.10822 3.67835 2.97600 45 - - 1.38629 1.38629 1.38629 1.38629 0.01669 4.10121 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentyfive_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:07:40 2012 NSEQ 2 EFFN 2.000000 CKSUM 3506156002 STATS LOCAL MSV -7.5008 0.72748 STATS LOCAL VITERBI -8.1864 0.72748 STATS LOCAL FORWARD -3.4958 0.72748 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.52125 1.29579 1.21643 1.55308 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.23862 2.84929 2.43386 2.70756 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentyfour_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:07:23 2012 NSEQ 54 EFFN 4.030884 CKSUM 1457287590 STATS LOCAL MSV -7.1491 0.71932 STATS LOCAL VITERBI -7.6747 0.71932 STATS LOCAL FORWARD -3.4488 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.04535 1.11942 0.98371 1.77033 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 0.00000 * 1 3.08392 3.78870 0.09735 3.71506 1 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 2 3.45031 0.14947 3.49811 2.56596 2 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 3 3.08392 3.78870 0.09735 3.71506 3 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 4 3.66410 0.10573 3.70323 2.99446 4 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 5 3.66410 0.10573 3.70323 2.99446 5 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 6 3.66410 0.10573 3.70323 2.99446 6 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 7 3.08392 3.78870 0.09735 3.71506 7 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 8 0.13796 3.50238 2.71853 3.41818 8 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 9 3.08392 3.78870 0.09735 3.71506 9 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 10 3.08392 3.78870 0.09735 3.71506 10 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 11 3.66410 0.10573 3.70323 2.99446 11 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 12 2.52879 0.85000 2.59963 0.87101 12 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 13 3.22583 2.53318 3.26898 0.17099 13 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 14 2.92148 0.32796 2.98592 1.74147 14 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 15 3.08392 3.78870 0.09735 3.71506 15 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 16 3.08392 3.78870 0.09735 3.71506 16 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 17 3.38134 0.16580 3.43180 2.44814 17 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 18 3.33523 0.17750 3.38738 2.37261 18 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 19 1.64990 2.96161 0.36060 2.83134 19 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 20 0.11785 3.58244 2.93213 3.50384 20 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 21 3.08392 3.78870 0.09735 3.71506 21 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 22 3.08392 3.78870 0.09735 3.71506 22 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 23 3.08392 3.78870 0.09735 3.71506 23 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 24 3.66410 0.10573 3.70323 2.99446 24 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 25 0.11785 3.58244 2.93213 3.50384 25 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 26 3.66410 0.10573 3.70323 2.99446 26 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 27 2.99000 3.28184 0.12599 3.48914 27 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 28 3.03317 2.09684 3.08495 0.24429 28 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 29 3.51507 0.13525 3.56027 2.68353 29 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 30 3.29760 2.72774 3.33760 0.14834 30 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 31 3.08392 3.78870 0.09735 3.71506 31 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 32 3.38134 0.16580 3.43180 2.44814 32 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 33 2.71137 1.47995 2.77533 0.44071 33 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 34 3.29760 2.72774 3.33760 0.14834 34 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 35 3.08392 3.78870 0.09735 3.71506 35 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 36 3.08392 3.78870 0.09735 3.71506 36 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 37 3.08392 3.78870 0.09735 3.71506 37 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 38 3.03328 0.27630 3.09490 1.91071 38 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 39 3.08392 3.78870 0.09735 3.71506 39 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 40 3.29760 2.72774 3.33760 0.14834 40 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 41 3.66410 0.10573 3.70323 2.99446 41 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 42 3.08392 3.78870 0.09735 3.71506 42 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 43 2.77698 0.33436 2.64739 1.88956 43 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 44 0.11785 3.58244 2.93213 3.50384 44 - - 1.38629 1.38629 1.38629 1.38629 0.03262 4.13210 4.13210 1.46634 0.26236 1.09861 0.40547 45 2.61157 0.59203 2.68190 1.18763 45 - - 1.38629 1.38629 1.38629 1.38629 0.01645 4.11592 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentynine_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:08:34 2012 NSEQ 75 EFFN 3.520203 CKSUM 4214802283 STATS LOCAL MSV -7.3205 0.71933 STATS LOCAL VITERBI -7.8616 0.71933 STATS LOCAL FORWARD -3.4501 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.61407 1.13672 1.12900 1.85344 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 0.00000 * 1 3.50349 0.12212 3.54991 2.87996 1 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 2 3.50349 0.12212 3.54991 2.87996 2 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 3 2.73573 3.53280 0.13493 3.43720 3 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 4 0.13407 3.44147 2.84153 3.34899 4 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 5 2.98975 3.64948 0.11062 3.56065 5 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 6 2.98975 3.64948 0.11062 3.56065 6 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 7 2.98975 3.64948 0.11062 3.56065 7 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 8 0.13407 3.44147 2.84153 3.34899 8 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 9 2.87305 0.31464 2.93828 1.82969 9 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 10 3.50349 0.12212 3.54991 2.87996 10 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 11 1.14532 0.98332 2.08943 1.69252 11 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 12 2.36639 2.27561 1.70310 0.47590 12 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 13 3.50349 0.12212 3.54991 2.87996 13 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 14 3.50349 0.12212 3.54991 2.87996 14 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 15 3.50349 0.12212 3.54991 2.87996 15 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 16 2.98975 3.64948 0.11062 3.56065 16 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 17 0.13407 3.44147 2.84153 3.34899 17 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 18 2.98975 3.64948 0.11062 3.56065 18 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 19 2.98975 3.64948 0.11062 3.56065 19 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 20 2.98975 3.64948 0.11062 3.56065 20 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 21 3.50349 0.12212 3.54991 2.87996 21 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 22 0.13407 3.44147 2.84153 3.34899 22 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 23 3.50349 0.12212 3.54991 2.87996 23 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 24 2.46147 3.38186 0.17088 3.27586 24 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 25 3.50349 0.12212 3.54991 2.87996 25 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 26 3.50349 0.12212 3.54991 2.87996 26 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 27 3.15082 2.63465 3.19658 0.16897 27 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 28 2.98975 3.64948 0.11062 3.56065 28 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 29 3.50349 0.12212 3.54991 2.87996 29 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 30 3.50349 0.12212 3.54991 2.87996 30 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 31 3.15082 2.63465 3.19658 0.16897 31 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 32 3.50349 0.12212 3.54991 2.87996 32 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 33 0.28595 2.82529 2.54517 2.19872 33 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 34 3.02876 2.33986 3.07919 0.21160 34 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 35 2.98975 3.64948 0.11062 3.56065 35 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 36 2.98975 3.64948 0.11062 3.56065 36 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 37 2.98975 3.64948 0.11062 3.56065 37 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 38 3.50349 0.12212 3.54991 2.87996 38 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 39 2.98975 3.64948 0.11062 3.56065 39 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 40 3.15082 2.63465 3.19658 0.16897 40 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 41 3.15082 2.63465 3.19658 0.16897 41 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 42 0.13407 3.44147 2.84153 3.34899 42 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 43 2.98975 3.64948 0.11062 3.56065 43 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 44 0.13407 3.44147 2.84153 3.34899 44 - - 1.38629 1.38629 1.38629 1.38629 0.03559 4.04659 4.04659 1.46634 0.26236 1.09861 0.40547 45 0.13407 3.44147 2.84153 3.34899 45 - - 1.38629 1.38629 1.38629 1.38629 0.01795 4.02895 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentyone_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:03:41 2012 NSEQ 599 EFFN 5.927299 CKSUM 1282541197 STATS LOCAL MSV -6.8074 0.71932 STATS LOCAL VITERBI -7.4983 0.71932 STATS LOCAL FORWARD -3.9068 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.84517 1.10322 1.09393 1.74124 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 0.00000 * 1 3.11256 4.08891 0.08199 4.04723 1 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 2 3.81774 0.11010 3.52105 2.94300 2 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 3 3.98691 0.09021 4.01203 3.00368 3 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 4 3.38589 0.15019 3.66582 2.52544 4 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 5 2.03947 2.89434 0.32975 2.34900 5 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 6 0.09766 3.90429 2.96151 3.85617 6 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 7 0.33071 2.80869 1.87991 2.67802 7 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 8 3.10925 4.03118 0.08877 3.79183 8 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 9 3.78449 0.11940 3.58445 2.77939 9 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 10 3.72335 0.09223 3.96663 3.10079 10 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 11 0.84822 2.26890 2.03445 1.08576 11 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 12 2.81992 2.18962 3.09378 0.24450 12 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 13 2.99698 1.64338 2.86722 0.35685 13 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 14 1.40865 1.26890 2.10752 1.04172 14 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 15 3.16915 4.10190 0.07882 4.06186 15 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 16 3.14358 4.09614 0.08023 4.05537 16 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 17 2.79155 0.43147 2.79190 1.47923 17 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 18 2.39051 0.74458 2.65229 1.01338 18 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 19 2.56871 3.83022 0.13378 3.61632 19 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 20 0.09594 3.87393 3.14889 3.58261 20 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 21 3.11814 3.67838 0.09316 3.93998 21 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 22 3.32075 4.13261 0.07128 4.09614 22 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 23 3.27757 3.64613 0.08626 3.97203 23 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 24 4.06640 0.07430 4.08665 3.27894 24 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 25 0.08455 3.95086 3.17582 3.90811 25 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 26 3.77969 0.09699 3.80767 3.04909 26 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 27 3.05181 4.07394 0.08561 4.03033 27 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 28 3.28089 1.82051 3.32900 0.26836 28 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 29 4.06640 0.07430 4.08665 3.27894 29 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 30 3.51518 2.93205 3.11370 0.13635 30 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 31 3.25461 3.97089 0.09364 3.44412 31 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 32 3.91257 0.09557 3.67161 3.08517 32 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 33 3.93957 0.09981 3.96755 2.87147 33 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 34 3.70623 2.99468 3.73046 0.10381 34 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 35 3.32075 4.13261 0.07128 4.09614 35 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 36 3.27358 4.01580 0.08725 3.58801 36 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 37 3.32075 4.13261 0.07128 4.09614 37 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 38 3.26724 0.28921 3.32491 1.73127 38 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 39 3.17845 4.10395 0.07832 4.06416 39 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 40 3.67419 2.86107 3.70040 0.11349 40 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 41 4.02320 0.08293 4.04609 3.11914 41 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 42 0.11990 3.74285 2.95937 3.28474 42 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 43 3.55391 0.10863 3.86661 2.93008 43 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 44 0.86136 2.72729 0.84837 2.47808 44 - - 1.38629 1.38629 1.38629 1.38629 0.02492 4.39781 4.39781 1.46634 0.26236 1.09861 0.40547 45 3.37898 0.16398 3.61810 2.40435 45 - - 1.38629 1.38629 1.38629 1.38629 0.01254 4.38543 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentysevena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:07:57 2012 NSEQ 16 EFFN 3.308594 CKSUM 3310407156 STATS LOCAL MSV -8.2848 0.71933 STATS LOCAL VITERBI -7.9184 0.71933 STATS LOCAL FORWARD -3.7813 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.17979 1.20305 1.04053 1.45504 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 0.00000 * 1 3.42790 0.13083 3.47758 2.82520 1 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 2 2.94437 3.58317 0.11766 3.48736 2 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 3 3.42790 0.13083 3.47758 2.82520 3 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 4 3.08405 2.59224 3.13238 0.17941 4 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 5 3.42790 0.13083 3.47758 2.82520 5 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 6 2.94437 3.58317 0.11766 3.48736 6 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 7 0.14249 3.37574 2.79899 3.27698 7 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 8 2.94437 3.58317 0.11766 3.48736 8 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 9 2.94437 3.58317 0.11766 3.48736 9 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 10 3.42790 0.13083 3.47758 2.82520 10 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 11 1.89641 2.30749 2.51977 0.40062 11 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 12 2.94437 3.58317 0.11766 3.48736 12 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 13 2.90666 2.18699 2.96140 0.24674 13 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 14 2.90666 2.18699 2.96140 0.24674 14 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 15 0.14249 3.37574 2.79899 3.27698 15 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 16 2.94437 3.58317 0.11766 3.48736 16 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 17 3.42790 0.13083 3.47758 2.82520 17 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 18 3.42790 0.13083 3.47758 2.82520 18 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 19 2.94437 3.58317 0.11766 3.48736 19 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 20 0.14249 3.37574 2.79899 3.27698 20 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 21 2.94437 3.58317 0.11766 3.48736 21 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 22 2.94437 3.58317 0.11766 3.48736 22 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 23 2.94437 3.58317 0.11766 3.48736 23 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 24 3.42790 0.13083 3.47758 2.82520 24 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 25 2.94437 3.58317 0.11766 3.48736 25 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 26 3.08405 2.59224 3.13238 0.17941 26 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 27 2.94437 3.58317 0.11766 3.48736 27 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 28 3.42790 0.13083 3.47758 2.82520 28 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 29 3.42790 0.13083 3.47758 2.82520 29 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 30 3.08405 2.59224 3.13238 0.17941 30 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 31 2.94437 3.58317 0.11766 3.48736 31 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 32 3.42790 0.13083 3.47758 2.82520 32 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 33 3.42790 0.13083 3.47758 2.82520 33 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 34 3.08405 2.59224 3.13238 0.17941 34 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 35 2.94437 3.58317 0.11766 3.48736 35 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 36 2.94437 3.58317 0.11766 3.48736 36 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 37 2.94437 3.58317 0.11766 3.48736 37 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 38 3.42790 0.13083 3.47758 2.82520 38 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 39 2.94437 3.58317 0.11766 3.48736 39 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 40 3.08405 2.59224 3.13238 0.17941 40 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 41 3.42790 0.13083 3.47758 2.82520 41 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 42 3.08405 2.59224 3.13238 0.17941 42 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 43 3.08405 2.59224 3.13238 0.17941 43 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 44 3.08405 2.59224 3.13238 0.17941 44 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 45 2.96271 0.26173 3.02575 2.03961 45 - - 1.38629 1.38629 1.38629 1.38629 0.01866 3.99057 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentysevenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:08:03 2012 NSEQ 5 EFFN 3.071289 CKSUM 2888586029 STATS LOCAL MSV -8.1248 0.71931 STATS LOCAL VITERBI -7.8960 0.71931 STATS LOCAL FORWARD -3.7218 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.54970 1.27953 1.04201 1.85294 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 0.00000 * 1 3.33613 0.14240 3.38959 2.75784 1 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 2 2.88802 3.50187 0.12701 3.39782 2 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 3 3.33613 0.14240 3.38959 2.75784 3 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 4 3.33613 0.14240 3.38959 2.75784 4 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 5 3.33613 0.14240 3.38959 2.75784 5 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 6 2.88802 3.50187 0.12701 3.39782 6 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 7 0.15351 3.29630 2.74702 3.19015 7 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 8 2.88802 3.50187 0.12701 3.39782 8 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 9 2.88802 3.50187 0.12701 3.39782 9 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 10 0.15351 3.29630 2.74702 3.19015 10 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 11 3.00463 2.54156 3.05596 0.19283 11 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 12 2.88802 3.50187 0.12701 3.39782 12 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 13 3.33613 0.14240 3.38959 2.75784 13 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 14 0.15351 3.29630 2.74702 3.19015 14 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 15 0.15351 3.29630 2.74702 3.19015 15 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 16 2.88802 3.50187 0.12701 3.39782 16 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 17 3.33613 0.14240 3.38959 2.75784 17 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 18 3.33613 0.14240 3.38959 2.75784 18 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 19 2.88802 3.50187 0.12701 3.39782 19 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 20 0.15351 3.29630 2.74702 3.19015 20 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 21 2.88802 3.50187 0.12701 3.39782 21 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 22 2.88802 3.50187 0.12701 3.39782 22 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 23 2.88802 3.50187 0.12701 3.39782 23 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 24 3.33613 0.14240 3.38959 2.75784 24 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 25 0.15351 3.29630 2.74702 3.19015 25 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 26 3.33613 0.14240 3.38959 2.75784 26 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 27 2.88802 3.50187 0.12701 3.39782 27 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 28 3.33613 0.14240 3.38959 2.75784 28 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 29 3.33613 0.14240 3.38959 2.75784 29 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 30 3.00463 2.54156 3.05596 0.19283 30 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 31 2.88802 3.50187 0.12701 3.39782 31 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 32 3.33613 0.14240 3.38959 2.75784 32 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 33 0.15351 3.29630 2.74702 3.19015 33 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 34 3.00463 2.54156 3.05596 0.19283 34 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 35 2.88802 3.50187 0.12701 3.39782 35 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 36 2.88802 3.50187 0.12701 3.39782 36 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 37 2.88802 3.50187 0.12701 3.39782 37 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 38 3.00463 2.54156 3.05596 0.19283 38 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 39 2.88802 3.50187 0.12701 3.39782 39 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 40 3.00463 2.54156 3.05596 0.19283 40 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 41 0.15351 3.29630 2.74702 3.19015 41 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 42 0.15351 3.29630 2.74702 3.19015 42 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 43 3.00463 2.54156 3.05596 0.19283 43 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 44 2.88802 3.50187 0.12701 3.39782 44 - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 45 3.33613 0.14240 3.38959 2.75784 45 - - 1.38629 1.38629 1.38629 1.38629 0.01953 3.94571 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentysevenc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:08:11 2012 NSEQ 6 EFFN 3.102539 CKSUM 2734064390 STATS LOCAL MSV -8.2115 0.71931 STATS LOCAL VITERBI -7.8157 0.71931 STATS LOCAL FORWARD -3.5385 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.71970 1.27293 1.04361 1.66765 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 0.00000 * 1 3.34866 0.14075 3.40161 2.76709 1 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 2 2.89580 3.51302 0.12568 3.41008 2 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 3 3.34866 0.14075 3.40161 2.76709 3 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 4 3.34866 0.14075 3.40161 2.76709 4 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 5 3.34866 0.14075 3.40161 2.76709 5 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 6 0.15195 3.30713 2.75414 3.20197 6 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 7 0.15195 3.30713 2.75414 3.20197 7 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 8 2.89580 3.51302 0.12568 3.41008 8 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 9 2.89580 3.51302 0.12568 3.41008 9 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 10 3.01538 2.54843 3.06630 0.19095 10 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 11 3.01538 2.54843 3.06630 0.19095 11 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 12 2.89580 3.51302 0.12568 3.41008 12 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 13 3.34866 0.14075 3.40161 2.76709 13 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 14 0.15195 3.30713 2.75414 3.20197 14 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 15 3.34866 0.14075 3.40161 2.76709 15 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 16 2.89580 3.51302 0.12568 3.41008 16 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 17 3.34866 0.14075 3.40161 2.76709 17 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 18 3.34866 0.14075 3.40161 2.76709 18 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 19 2.89580 3.51302 0.12568 3.41008 19 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 20 0.15195 3.30713 2.75414 3.20197 20 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 21 2.89580 3.51302 0.12568 3.41008 21 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 22 2.89580 3.51302 0.12568 3.41008 22 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 23 2.89580 3.51302 0.12568 3.41008 23 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 24 3.34866 0.14075 3.40161 2.76709 24 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 25 0.15195 3.30713 2.75414 3.20197 25 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 26 3.34866 0.14075 3.40161 2.76709 26 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 27 2.89580 3.51302 0.12568 3.41008 27 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 28 3.01538 2.54843 3.06630 0.19095 28 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 29 3.34866 0.14075 3.40161 2.76709 29 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 30 3.01538 2.54843 3.06630 0.19095 30 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 31 2.89580 3.51302 0.12568 3.41008 31 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 32 3.34866 0.14075 3.40161 2.76709 32 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 33 0.15195 3.30713 2.75414 3.20197 33 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 34 3.01538 2.54843 3.06630 0.19095 34 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 35 2.89580 3.51302 0.12568 3.41008 35 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 36 2.89580 3.51302 0.12568 3.41008 36 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 37 2.89580 3.51302 0.12568 3.41008 37 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 38 3.01538 2.54843 3.06630 0.19095 38 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 39 2.89580 3.51302 0.12568 3.41008 39 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 40 3.01538 2.54843 3.06630 0.19095 40 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 41 2.89580 3.51302 0.12568 3.41008 41 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 42 0.15195 3.30713 2.75414 3.20197 42 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 43 3.01538 2.54843 3.06630 0.19095 43 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 44 2.89580 3.51302 0.12568 3.41008 44 - - 1.38629 1.38629 1.38629 1.38629 0.03845 3.97077 3.97077 1.46634 0.26236 1.09861 0.40547 45 3.34866 0.14075 3.40161 2.76709 45 - - 1.38629 1.38629 1.38629 1.38629 0.01941 3.95173 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentythree_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:07:10 2012 NSEQ 95 EFFN 3.273163 CKSUM 688352655 STATS LOCAL MSV -8.2001 0.71932 STATS LOCAL VITERBI -7.8064 0.71932 STATS LOCAL FORWARD -3.7937 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.81877 1.14736 1.03868 1.79350 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 0.00000 * 1 2.93635 3.57151 0.11895 3.47450 1 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 2 3.41468 0.13243 3.46492 2.81556 2 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 3 3.41468 0.13243 3.46492 2.81556 3 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 4 3.41468 0.13243 3.46492 2.81556 4 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 5 2.93635 3.57151 0.11895 3.47450 5 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 6 0.14402 3.36428 2.79153 3.26443 6 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 7 0.14402 3.36428 2.79153 3.26443 7 - - 1.38629 1.38629 1.38629 1.38629 0.04998 4.00244 3.49078 1.46634 0.26236 1.09861 0.40547 8 2.92085 3.54908 0.12148 3.44977 8 - - 1.38629 1.38629 1.38629 1.38629 0.03770 3.99016 3.99016 1.46634 0.26236 0.78800 0.60651 9 3.41468 0.13243 3.46492 2.81556 9 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 10 3.41468 0.13243 3.46492 2.81556 10 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 11 0.27430 2.83445 2.53617 2.28302 11 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 12 3.07250 2.58489 3.12127 0.18129 12 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 13 1.59713 1.94122 2.26115 0.59827 13 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 14 3.41468 0.13243 3.46492 2.81556 14 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 15 2.93635 3.57151 0.11895 3.47450 15 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 16 2.93635 3.57151 0.11895 3.47450 16 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 17 3.41468 0.13243 3.46492 2.81556 17 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 18 3.41468 0.13243 3.46492 2.81556 18 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 19 2.93635 3.57151 0.11895 3.47450 19 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 20 0.14402 3.36428 2.79153 3.26443 20 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 21 2.93635 3.57151 0.11895 3.47450 21 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 22 2.93635 3.57151 0.11895 3.47450 22 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 23 2.93635 3.57151 0.11895 3.47450 23 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 24 3.41468 0.13243 3.46492 2.81556 24 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 25 0.14402 3.36428 2.79153 3.26443 25 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 26 3.41468 0.13243 3.46492 2.81556 26 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 27 2.93635 3.57151 0.11895 3.47450 27 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 28 3.41468 0.13243 3.46492 2.81556 28 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 29 3.41468 0.13243 3.46492 2.81556 29 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 30 3.07250 2.58489 3.12127 0.18129 30 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 31 2.93635 3.57151 0.11895 3.47450 31 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 32 3.41468 0.13243 3.46492 2.81556 32 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 33 3.41468 0.13243 3.46492 2.81556 33 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 34 3.07250 2.58489 3.12127 0.18129 34 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 35 2.93635 3.57151 0.11895 3.47450 35 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 36 2.93635 3.57151 0.11895 3.47450 36 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 37 2.93635 3.57151 0.11895 3.47450 37 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 38 2.80462 1.99740 2.86304 0.29211 38 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 39 2.93635 3.57151 0.11895 3.47450 39 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 40 3.07250 2.58489 3.12127 0.18129 40 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 41 3.41468 0.13243 3.46492 2.81556 41 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 42 2.93635 3.57151 0.11895 3.47450 42 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 43 3.07250 2.58489 3.12127 0.18129 43 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 44 2.86288 3.24962 0.14204 3.30981 44 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00244 4.00244 1.46634 0.26236 1.09861 0.40547 45 0.14402 3.36428 2.79153 3.26443 45 - - 1.38629 1.38629 1.38629 1.38629 0.01879 3.98400 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwoa_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:03:52 2012 NSEQ 29 EFFN 3.260376 CKSUM 1765464125 STATS LOCAL MSV -8.1194 0.71933 STATS LOCAL VITERBI -7.9339 0.71933 STATS LOCAL FORWARD -3.8106 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.05609 1.07633 1.09226 1.63094 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 0.00000 * 1 2.93342 3.56726 0.11943 3.46982 1 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 2 3.40987 0.13301 3.46030 2.81205 2 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 3 3.40987 0.13301 3.46030 2.81205 3 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 4 3.40987 0.13301 3.46030 2.81205 4 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 5 2.93342 3.56726 0.11943 3.46982 5 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 6 3.40987 0.13301 3.46030 2.81205 6 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 7 2.93342 3.56726 0.11943 3.46982 7 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 8 2.93342 3.56726 0.11943 3.46982 8 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 9 3.06831 2.58222 3.11724 0.18198 9 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 10 3.11459 0.20711 3.17359 2.29441 10 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 11 3.06831 2.58222 3.11724 0.18198 11 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 12 3.06831 2.58222 3.11724 0.18198 12 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 13 2.62442 0.44765 2.69452 1.51042 13 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 14 3.06831 2.58222 3.11724 0.18198 14 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 15 2.93342 3.56726 0.11943 3.46982 15 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 16 2.93342 3.56726 0.11943 3.46982 16 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 17 3.40987 0.13301 3.46030 2.81205 17 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 18 3.40987 0.13301 3.46030 2.81205 18 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 19 0.14459 3.36011 2.78881 3.25987 19 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 20 0.14459 3.36011 2.78881 3.25987 20 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 21 2.93342 3.56726 0.11943 3.46982 21 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 22 2.93342 3.56726 0.11943 3.46982 22 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 23 2.93342 3.56726 0.11943 3.46982 23 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 24 3.40987 0.13301 3.46030 2.81205 24 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 25 0.14459 3.36011 2.78881 3.25987 25 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 26 3.40987 0.13301 3.46030 2.81205 26 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 27 2.93342 3.56726 0.11943 3.46982 27 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 28 3.06831 2.58222 3.11724 0.18198 28 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 29 3.40987 0.13301 3.46030 2.81205 29 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 30 3.06831 2.58222 3.11724 0.18198 30 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 31 2.93342 3.56726 0.11943 3.46982 31 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 32 3.40987 0.13301 3.46030 2.81205 32 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 33 3.40987 0.13301 3.46030 2.81205 33 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 34 3.06831 2.58222 3.11724 0.18198 34 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 35 2.93342 3.56726 0.11943 3.46982 35 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 36 2.93342 3.56726 0.11943 3.46982 36 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 37 2.93342 3.56726 0.11943 3.46982 37 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 38 3.40987 0.13301 3.46030 2.81205 38 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 39 2.93342 3.56726 0.11943 3.46982 39 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 40 3.06831 2.58222 3.11724 0.18198 40 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 41 3.40987 0.13301 3.46030 2.81205 41 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 42 0.14459 3.36011 2.78881 3.25987 42 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 43 2.90443 0.28254 2.96888 1.96615 43 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 44 3.40987 0.13301 3.46030 2.81205 44 - - 1.38629 1.38629 1.38629 1.38629 0.03732 4.00010 4.00010 1.46634 0.26236 1.09861 0.40547 45 2.93342 3.56726 0.11943 3.46982 45 - - 1.38629 1.38629 1.38629 1.38629 0.01883 3.98162 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwob_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:04:01 2012 NSEQ 3 EFFN 3.000000 CKSUM 2537645075 STATS LOCAL MSV -8.1699 0.71983 STATS LOCAL VITERBI -7.8032 0.71983 STATS LOCAL FORWARD -3.6142 0.71983 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.92558 1.10604 1.15098 1.57495 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.86982 3.47591 0.13017 3.36931 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.97980 2.52563 3.03204 0.19727 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.86982 3.47591 0.13017 3.36931 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.86982 3.47591 0.13017 3.36931 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.97980 2.52563 3.03204 0.19727 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 3.30705 0.14631 3.36166 2.73626 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.30705 0.14631 3.36166 2.73626 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.15719 3.27118 2.73043 3.16274 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.97980 2.52563 3.03204 0.19727 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 3.30705 0.14631 3.36166 2.73626 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.30705 0.14631 3.36166 2.73626 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.30705 0.14631 3.36166 2.73626 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.30705 0.14631 3.36166 2.73626 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.86982 3.47591 0.13017 3.36931 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwoc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:04:10 2012 NSEQ 2 EFFN 2.000000 CKSUM 1546457202 STATS LOCAL MSV -7.4416 0.72715 STATS LOCAL VITERBI -8.2310 0.72715 STATS LOCAL FORWARD -2.9315 0.72715 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.66948 1.15317 1.17024 1.68346 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.53331 3.02441 0.20344 2.88069 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwod_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:04:17 2012 NSEQ 3 EFFN 3.000000 CKSUM 3142111401 STATS LOCAL MSV -8.1951 0.71984 STATS LOCAL VITERBI -7.8511 0.71984 STATS LOCAL FORWARD -3.4557 0.71984 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.63362 1.16016 1.20167 1.65731 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.86982 3.47591 0.13017 3.36931 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.86982 3.47591 0.13017 3.36931 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.86982 3.47591 0.13017 3.36931 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.97980 2.52563 3.03204 0.19727 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 0.15719 3.27118 2.73043 3.16274 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.15719 3.27118 2.73043 3.16274 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 0.15719 3.27118 2.73043 3.16274 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 3.30705 0.14631 3.36166 2.73626 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.30705 0.14631 3.36166 2.73626 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.97980 2.52563 3.03204 0.19727 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.86982 3.47591 0.13017 3.36931 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwoe_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:04:32 2012 NSEQ 14 EFFN 3.182129 CKSUM 3263474986 STATS LOCAL MSV -8.2849 0.71931 STATS LOCAL VITERBI -7.9060 0.71931 STATS LOCAL FORWARD -3.3628 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.04320 1.23915 0.94907 1.64167 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 0.00000 * 1 2.91511 3.54080 0.12243 3.44065 1 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 2 3.37995 0.13673 3.43163 2.79013 2 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 3 3.37995 0.13673 3.43163 2.79013 3 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 4 3.37995 0.13673 3.43163 2.79013 4 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 5 2.91511 3.54080 0.12243 3.44065 5 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 6 0.14813 3.33419 2.77189 3.23153 6 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 7 2.91511 3.54080 0.12243 3.44065 7 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 8 2.91511 3.54080 0.12243 3.44065 8 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 9 3.37995 0.13673 3.43163 2.79013 9 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 10 2.44259 0.65730 2.51520 1.15845 10 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 11 3.04234 2.56566 3.09225 0.18632 11 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 12 3.04234 2.56566 3.09225 0.18632 12 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 13 2.91511 3.54080 0.12243 3.44065 13 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 14 3.04234 2.56566 3.09225 0.18632 14 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 15 2.91511 3.54080 0.12243 3.44065 15 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 16 2.91511 3.54080 0.12243 3.44065 16 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 17 3.37995 0.13673 3.43163 2.79013 17 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 18 3.37995 0.13673 3.43163 2.79013 18 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 19 2.91511 3.54080 0.12243 3.44065 19 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 20 0.14813 3.33419 2.77189 3.23153 20 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 21 2.91511 3.54080 0.12243 3.44065 21 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 22 2.91511 3.54080 0.12243 3.44065 22 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 23 2.91511 3.54080 0.12243 3.44065 23 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 24 3.37995 0.13673 3.43163 2.79013 24 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 25 0.14813 3.33419 2.77189 3.23153 25 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 26 3.37995 0.13673 3.43163 2.79013 26 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 27 2.91511 3.54080 0.12243 3.44065 27 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 28 3.37995 0.13673 3.43163 2.79013 28 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 29 3.37995 0.13673 3.43163 2.79013 29 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 30 3.04234 2.56566 3.09225 0.18632 30 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 31 2.91511 3.54080 0.12243 3.44065 31 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 32 3.37995 0.13673 3.43163 2.79013 32 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 33 3.04234 2.56566 3.09225 0.18632 33 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 34 3.04234 2.56566 3.09225 0.18632 34 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 35 2.91511 3.54080 0.12243 3.44065 35 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 36 2.91511 3.54080 0.12243 3.44065 36 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 37 2.91511 3.54080 0.12243 3.44065 37 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 38 3.37995 0.13673 3.43163 2.79013 38 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 39 2.91511 3.54080 0.12243 3.44065 39 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 40 3.04234 2.56566 3.09225 0.18632 40 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 41 3.37995 0.13673 3.43163 2.79013 41 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 42 0.14813 3.33419 2.77189 3.23153 42 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 43 3.04234 2.56566 3.09225 0.18632 43 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 44 2.91511 3.54080 0.12243 3.44065 44 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98567 3.98567 1.46634 0.26236 1.09861 0.40547 45 2.91511 3.54080 0.12243 3.44065 45 - - 1.38629 1.38629 1.38629 1.38629 0.01911 3.96691 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwof_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:04:41 2012 NSEQ 6 EFFN 3.219727 CKSUM 3873813818 STATS LOCAL MSV -8.1728 0.71932 STATS LOCAL VITERBI -7.6377 0.71932 STATS LOCAL FORWARD -4.0506 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.82052 1.38584 1.14282 1.31294 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 0.00000 * 1 2.92399 3.55362 0.12096 3.45477 1 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 2 3.39443 0.13492 3.44551 2.80075 2 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 3 3.39443 0.13492 3.44551 2.80075 3 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 4 3.05488 2.57367 3.10432 0.18421 4 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 5 2.92399 3.55362 0.12096 3.45477 5 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 6 0.14640 3.34673 2.78009 3.24524 6 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 7 3.05488 2.57367 3.10432 0.18421 7 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 8 2.92399 3.55362 0.12096 3.45477 8 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 9 3.39443 0.13492 3.44551 2.80075 9 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 10 3.39443 0.13492 3.44551 2.80075 10 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 11 0.14640 3.34673 2.78009 3.24524 11 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 12 3.05488 2.57367 3.10432 0.18421 12 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 13 3.05488 2.57367 3.10432 0.18421 13 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 14 3.05488 2.57367 3.10432 0.18421 14 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 15 2.92399 3.55362 0.12096 3.45477 15 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 16 2.92399 3.55362 0.12096 3.45477 16 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 17 3.05488 2.57367 3.10432 0.18421 17 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 18 2.92399 3.55362 0.12096 3.45477 18 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 19 2.92399 3.55362 0.12096 3.45477 19 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 20 0.14640 3.34673 2.78009 3.24524 20 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 21 2.92399 3.55362 0.12096 3.45477 21 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 22 2.92399 3.55362 0.12096 3.45477 22 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 23 2.92399 3.55362 0.12096 3.45477 23 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 24 3.39443 0.13492 3.44551 2.80075 24 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 25 0.14640 3.34673 2.78009 3.24524 25 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 26 3.39443 0.13492 3.44551 2.80075 26 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 27 0.14640 3.34673 2.78009 3.24524 27 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 28 3.05488 2.57367 3.10432 0.18421 28 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 29 3.39443 0.13492 3.44551 2.80075 29 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 30 3.05488 2.57367 3.10432 0.18421 30 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 31 2.92399 3.55362 0.12096 3.45477 31 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 32 3.39443 0.13492 3.44551 2.80075 32 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 33 3.39443 0.13492 3.44551 2.80075 33 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 34 3.05488 2.57367 3.10432 0.18421 34 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 35 2.92399 3.55362 0.12096 3.45477 35 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 36 3.05488 2.57367 3.10432 0.18421 36 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 37 2.92399 3.55362 0.12096 3.45477 37 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 38 3.05488 2.57367 3.10432 0.18421 38 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 39 2.92399 3.55362 0.12096 3.45477 39 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 40 3.05488 2.57367 3.10432 0.18421 40 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 41 3.39443 0.13492 3.44551 2.80075 41 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 42 0.14640 3.34673 2.78009 3.24524 42 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 43 3.39443 0.13492 3.44551 2.80075 43 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 44 2.92399 3.55362 0.12096 3.45477 44 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 45 3.05488 2.57367 3.10432 0.18421 45 - - 1.38629 1.38629 1.38629 1.38629 0.01898 3.97401 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwog_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:04:50 2012 NSEQ 2 EFFN 2.000000 CKSUM 4189612609 STATS LOCAL MSV -7.5585 0.72798 STATS LOCAL VITERBI -8.2493 0.72798 STATS LOCAL FORWARD -3.2939 0.72798 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.52018 1.19407 1.24915 1.65237 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.23862 2.84929 2.43386 2.70756 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.23862 2.84929 2.43386 2.70756 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 1.89532 1.96405 1.06955 1.00436 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwoh_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:05:00 2012 NSEQ 2 EFFN 2.000000 CKSUM 731096773 STATS LOCAL MSV -7.5025 0.72838 STATS LOCAL VITERBI -8.3209 0.72838 STATS LOCAL FORWARD -3.2627 0.72838 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.63166 1.32411 1.21084 1.42541 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 1.01448 1.11006 1.95471 1.79419 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.23862 2.84929 2.43386 2.70756 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwoi_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:05:07 2012 NSEQ 3 EFFN 3.000000 CKSUM 367268286 STATS LOCAL MSV -8.1402 0.72004 STATS LOCAL VITERBI -7.7871 0.72004 STATS LOCAL FORWARD -3.9309 0.72004 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.62474 1.46447 1.09052 1.44479 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.86982 3.47591 0.13017 3.36931 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.97980 2.52563 3.03204 0.19727 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 0.15719 3.27118 2.73043 3.16274 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.86982 3.47591 0.13017 3.36931 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 0.15719 3.27118 2.73043 3.16274 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.97980 2.52563 3.03204 0.19727 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.97980 2.52563 3.03204 0.19727 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.97980 2.52563 3.03204 0.19727 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.97980 2.52563 3.03204 0.19727 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.30705 0.14631 3.36166 2.73626 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.86982 3.47591 0.13017 3.36931 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwoj_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:05:15 2012 NSEQ 5 EFFN 3.364258 CKSUM 36523570 STATS LOCAL MSV -8.1118 0.71932 STATS LOCAL VITERBI -7.5667 0.71932 STATS LOCAL FORWARD -3.6845 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.81723 1.29833 1.10024 1.46212 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 0.00000 * 1 2.95673 3.60115 0.11570 3.50722 1 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 2 3.44834 0.12841 3.49715 2.84007 2 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 3 3.44834 0.12841 3.49715 2.84007 3 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 4 3.10197 2.60364 3.14962 0.17654 4 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 5 2.95673 3.60115 0.11570 3.50722 5 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 6 3.44834 0.12841 3.49715 2.84007 6 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 7 0.14016 3.39348 2.81050 3.29640 7 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 8 2.95673 3.60115 0.11570 3.50722 8 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 9 3.44834 0.12841 3.49715 2.84007 9 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 10 3.44834 0.12841 3.49715 2.84007 10 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 11 0.14016 3.39348 2.81050 3.29640 11 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 12 2.45545 1.19657 2.52565 0.63123 12 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 13 3.10197 2.60364 3.14962 0.17654 13 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 14 0.14016 3.39348 2.81050 3.29640 14 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 15 2.95673 3.60115 0.11570 3.50722 15 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 16 2.95673 3.60115 0.11570 3.50722 16 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 17 3.44834 0.12841 3.49715 2.84007 17 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 18 3.44834 0.12841 3.49715 2.84007 18 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 19 2.36626 1.91759 0.39750 2.43947 19 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 20 0.14016 3.39348 2.81050 3.29640 20 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 21 2.95673 3.60115 0.11570 3.50722 21 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 22 2.95673 3.60115 0.11570 3.50722 22 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 23 2.95673 3.60115 0.11570 3.50722 23 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 24 3.44834 0.12841 3.49715 2.84007 24 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 25 0.14016 3.39348 2.81050 3.29640 25 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 26 3.44834 0.12841 3.49715 2.84007 26 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 27 2.95673 3.60115 0.11570 3.50722 27 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 28 3.10197 2.60364 3.14962 0.17654 28 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 29 3.10197 2.60364 3.14962 0.17654 29 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 30 3.10197 2.60364 3.14962 0.17654 30 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 31 2.95673 3.60115 0.11570 3.50722 31 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 32 3.44834 0.12841 3.49715 2.84007 32 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 33 3.10197 2.60364 3.14962 0.17654 33 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 34 3.10197 2.60364 3.14962 0.17654 34 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 35 2.95673 3.60115 0.11570 3.50722 35 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 36 2.95673 3.60115 0.11570 3.50722 36 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 37 2.95673 3.60115 0.11570 3.50722 37 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 38 3.10197 2.60364 3.14962 0.17654 38 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 39 2.95673 3.60115 0.11570 3.50722 39 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 40 3.10197 2.60364 3.14962 0.17654 40 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 41 3.44834 0.12841 3.49715 2.84007 41 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 42 0.14016 3.39348 2.81050 3.29640 42 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 43 3.10197 2.60364 3.14962 0.17654 43 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 44 2.95673 3.60115 0.11570 3.50722 44 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 45 3.44834 0.12841 3.49715 2.84007 45 - - 1.38629 1.38629 1.38629 1.38629 0.01847 4.00081 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwok_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:05:22 2012 NSEQ 7 EFFN 3.448730 CKSUM 3430059084 STATS LOCAL MSV -7.3025 0.71933 STATS LOCAL VITERBI -7.6783 0.71933 STATS LOCAL FORWARD -3.9356 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.76008 1.42979 1.13365 1.32143 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 0.00000 * 1 2.97490 3.62770 0.11288 3.53655 1 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 2 3.47859 0.12491 3.52610 2.86199 2 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 3 3.47859 0.12491 3.52610 2.86199 3 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 4 3.12868 2.62060 3.17529 0.17235 4 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 5 3.47859 0.12491 3.52610 2.86199 5 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 6 0.13679 3.41978 2.82753 3.32522 6 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 7 0.58968 2.32944 2.25016 1.41567 7 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 8 2.97490 3.62770 0.11288 3.53655 8 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 9 3.47859 0.12491 3.52610 2.86199 9 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 10 3.47859 0.12491 3.52610 2.86199 10 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 11 0.13679 3.41978 2.82753 3.32522 11 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 12 3.12868 2.62060 3.17529 0.17235 12 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 13 3.12868 2.62060 3.17529 0.17235 13 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 14 0.13679 3.41978 2.82753 3.32522 14 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 15 2.97490 3.62770 0.11288 3.53655 15 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 16 2.97490 3.62770 0.11288 3.53655 16 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 17 3.12868 2.62060 3.17529 0.17235 17 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 18 3.12868 2.62060 3.17529 0.17235 18 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 19 2.97490 3.62770 0.11288 3.53655 19 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 20 0.13679 3.41978 2.82753 3.32522 20 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 21 2.97490 3.62770 0.11288 3.53655 21 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 22 2.97490 3.62770 0.11288 3.53655 22 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 23 2.97490 3.62770 0.11288 3.53655 23 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 24 3.47859 0.12491 3.52610 2.86199 24 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 25 0.13679 3.41978 2.82753 3.32522 25 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 26 3.47859 0.12491 3.52610 2.86199 26 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 27 2.97490 3.62770 0.11288 3.53655 27 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 28 2.45321 1.12645 2.52382 0.67404 28 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 29 3.12868 2.62060 3.17529 0.17235 29 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 30 3.12868 2.62060 3.17529 0.17235 30 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 31 2.97490 3.62770 0.11288 3.53655 31 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 32 3.47859 0.12491 3.52610 2.86199 32 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 33 3.12868 2.62060 3.17529 0.17235 33 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 34 3.12868 2.62060 3.17529 0.17235 34 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 35 2.97490 3.62770 0.11288 3.53655 35 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 36 2.97490 3.62770 0.11288 3.53655 36 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 37 2.97490 3.62770 0.11288 3.53655 37 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 38 3.12868 2.62060 3.17529 0.17235 38 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 39 2.97490 3.62770 0.11288 3.53655 39 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 40 3.12868 2.62060 3.17529 0.17235 40 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 41 3.47859 0.12491 3.52610 2.86199 41 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 42 0.13679 3.41978 2.82753 3.32522 42 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 43 3.12868 2.62060 3.17529 0.17235 43 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 44 2.97490 3.62770 0.11288 3.53655 44 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03402 4.03402 1.46634 0.26236 1.09861 0.40547 45 3.47859 0.12491 3.52610 2.86199 45 - - 1.38629 1.38629 1.38629 1.38629 0.01819 4.01615 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwol_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:05:41 2012 NSEQ 116 EFFN 3.961304 CKSUM 538949657 STATS LOCAL MSV -7.1544 0.71931 STATS LOCAL VITERBI -7.8271 0.71931 STATS LOCAL FORWARD -3.3492 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.70967 1.06073 1.05535 2.08105 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 0.00000 * 1 3.07219 3.77129 0.09890 3.69572 1 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 2 3.64389 0.10765 3.68396 2.98017 2 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 3 3.64389 0.10765 3.68396 2.98017 3 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 4 3.35116 0.17078 3.40267 2.42285 4 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 5 3.07219 3.77129 0.09890 3.69572 5 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 6 0.11978 3.56458 2.92066 3.48420 6 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 7 3.07219 3.77129 0.09890 3.69572 7 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 8 3.07219 3.77129 0.09890 3.69572 8 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 9 3.57056 0.12179 3.61350 2.82067 9 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 10 3.64389 0.10765 3.68396 2.98017 10 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 11 0.22681 3.05073 2.68861 2.43467 11 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 12 0.30585 3.01533 1.83789 2.89466 12 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 13 2.51625 0.86740 2.58719 0.85810 13 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 14 3.08039 0.14719 3.42228 2.84230 14 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 15 2.98457 3.58256 0.12541 3.23158 15 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 16 3.07219 3.77129 0.09890 3.69572 16 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 17 2.70822 0.46588 2.77703 1.41248 17 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 18 3.29513 0.18546 3.34863 2.33222 18 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 19 0.83191 2.61877 0.89684 2.47654 19 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 20 0.11978 3.56458 2.92066 3.48420 20 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 21 3.07219 3.77129 0.09890 3.69572 21 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 22 3.07219 3.77129 0.09890 3.69572 22 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 23 3.07219 3.77129 0.09890 3.69572 23 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 24 3.64389 0.10765 3.68396 2.98017 24 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 25 0.11978 3.56458 2.92066 3.48420 25 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 26 3.64389 0.10765 3.68396 2.98017 26 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 27 3.07219 3.77129 0.09890 3.69572 27 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 28 3.27872 2.71575 3.31947 0.15083 28 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 29 3.17025 0.22248 3.22784 2.13851 29 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 30 2.85803 0.35730 2.92386 1.66428 30 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 31 3.07219 3.77129 0.09890 3.69572 31 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 32 3.64389 0.10765 3.68396 2.98017 32 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 33 3.54039 0.12787 3.58455 2.76016 33 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 34 3.27872 2.71575 3.31947 0.15083 34 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 35 3.07219 3.77129 0.09890 3.69572 35 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 36 3.07219 3.77129 0.09890 3.69572 36 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 37 3.07219 3.77129 0.09890 3.69572 37 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 38 3.64389 0.10765 3.68396 2.98017 38 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 39 3.07219 3.77129 0.09890 3.69572 39 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 40 3.27872 2.71575 3.31947 0.15083 40 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 41 3.64389 0.10765 3.68396 2.98017 41 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 42 0.11978 3.56458 2.92066 3.48420 42 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 43 0.18025 3.34188 2.40153 3.24455 43 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 44 2.25273 2.47350 0.29035 2.77099 44 - - 1.38629 1.38629 1.38629 1.38629 0.03300 4.12087 4.12087 1.46634 0.26236 1.09861 0.40547 45 3.64389 0.10765 3.68396 2.98017 45 - - 1.38629 1.38629 1.38629 1.38629 0.01664 4.10451 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwom_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:05:48 2012 NSEQ 5 EFFN 3.012695 CKSUM 3140000806 STATS LOCAL MSV -8.2727 0.71934 STATS LOCAL VITERBI -7.9956 0.71934 STATS LOCAL FORWARD -3.4801 0.71934 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72318 1.06872 1.04741 2.06195 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 0.00000 * 1 2.87311 3.48058 0.12960 3.37444 1 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 2 3.31228 0.14560 3.36668 2.74015 2 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 3 3.31228 0.14560 3.36668 2.74015 3 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 4 3.31228 0.14560 3.36668 2.74015 4 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 5 2.87311 3.48058 0.12960 3.37444 5 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 6 0.15652 3.27570 2.73342 3.16767 6 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 7 2.87311 3.48058 0.12960 3.37444 7 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 8 2.87311 3.48058 0.12960 3.37444 8 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 9 3.31228 0.14560 3.36668 2.74015 9 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 10 3.31228 0.14560 3.36668 2.74015 10 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 11 2.87311 3.48058 0.12960 3.37444 11 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 12 2.98425 2.52849 3.03633 0.19646 12 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 13 3.31228 0.14560 3.36668 2.74015 13 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 14 0.15652 3.27570 2.73342 3.16767 14 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 15 2.87311 3.48058 0.12960 3.37444 15 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 16 2.87311 3.48058 0.12960 3.37444 16 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 17 3.31228 0.14560 3.36668 2.74015 17 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 18 3.31228 0.14560 3.36668 2.74015 18 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 19 0.15652 3.27570 2.73342 3.16767 19 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 20 0.15652 3.27570 2.73342 3.16767 20 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 21 2.87311 3.48058 0.12960 3.37444 21 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 22 2.87311 3.48058 0.12960 3.37444 22 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 23 2.87311 3.48058 0.12960 3.37444 23 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 24 3.31228 0.14560 3.36668 2.74015 24 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 25 0.15652 3.27570 2.73342 3.16767 25 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 26 3.31228 0.14560 3.36668 2.74015 26 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 27 2.87311 3.48058 0.12960 3.37444 27 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 28 2.98425 2.52849 3.03633 0.19646 28 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 29 3.31228 0.14560 3.36668 2.74015 29 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 30 3.31228 0.14560 3.36668 2.74015 30 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 31 2.87311 3.48058 0.12960 3.37444 31 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 32 3.31228 0.14560 3.36668 2.74015 32 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 33 3.31228 0.14560 3.36668 2.74015 33 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 34 2.98425 2.52849 3.03633 0.19646 34 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 35 2.87311 3.48058 0.12960 3.37444 35 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 36 2.87311 3.48058 0.12960 3.37444 36 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 37 2.87311 3.48058 0.12960 3.37444 37 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 38 3.31228 0.14560 3.36668 2.74015 38 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 39 2.87311 3.48058 0.12960 3.37444 39 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 40 2.98425 2.52849 3.03633 0.19646 40 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 41 3.31228 0.14560 3.36668 2.74015 41 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 42 0.15652 3.27570 2.73342 3.16767 42 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 43 0.15652 3.27570 2.73342 3.16767 43 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 44 2.87311 3.48058 0.12960 3.37444 44 - - 1.38629 1.38629 1.38629 1.38629 0.03912 3.95368 3.95368 1.46634 0.26236 1.09861 0.40547 45 3.31228 0.14560 3.36668 2.74015 45 - - 1.38629 1.38629 1.38629 1.38629 0.01975 3.93431 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwon_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:05:56 2012 NSEQ 89 EFFN 3.805206 CKSUM 1005965737 STATS LOCAL MSV -7.3815 0.71932 STATS LOCAL VITERBI -7.8302 0.71932 STATS LOCAL FORWARD -3.5553 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.64251 1.12328 1.08155 1.95033 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 0.00000 * 1 3.04470 3.73053 0.10266 3.65047 1 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 2 3.59670 0.11228 3.63895 2.94668 2 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 3 3.59670 0.11228 3.63895 2.94668 3 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 4 2.66051 1.47511 2.72546 0.45284 4 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 5 2.97092 3.57249 0.12491 3.26803 5 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 6 0.12440 3.52302 2.89399 3.43852 6 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 7 2.97300 3.57677 0.12426 3.27724 7 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 8 3.04470 3.73053 0.10266 3.65047 8 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 9 3.59670 0.11228 3.63895 2.94668 9 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 10 3.46992 0.13784 3.51689 2.68896 10 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 11 0.12440 3.52302 2.89399 3.43852 11 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 12 0.20209 3.02215 2.58211 2.83581 12 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 13 3.44636 0.14295 3.49423 2.64547 13 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 14 2.70171 2.30113 2.96020 0.24724 14 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 15 2.64615 3.54987 0.14062 3.45677 15 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 16 3.04470 3.73053 0.10266 3.65047 16 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 17 3.45477 0.14111 3.50232 2.66087 17 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 18 2.89013 0.32717 2.95513 1.76379 18 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 19 0.19587 3.26763 2.32726 3.16474 19 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 20 0.12440 3.52302 2.89399 3.43852 20 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 21 2.61866 3.53526 0.14397 3.44103 21 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 22 3.04470 3.73053 0.10266 3.65047 22 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 23 3.04470 3.73053 0.10266 3.65047 23 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 24 3.59670 0.11228 3.63895 2.94668 24 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 25 0.12440 3.52302 2.89399 3.43852 25 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 26 3.50014 0.13147 3.54596 2.74642 26 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 27 3.04470 3.73053 0.10266 3.65047 27 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 28 3.15922 2.49068 3.20480 0.18138 28 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 29 3.08200 0.24476 3.14207 2.05534 29 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 30 3.44545 0.14315 3.49335 2.64381 30 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 31 3.04470 3.73053 0.10266 3.65047 31 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 32 3.59670 0.11228 3.63895 2.94668 32 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 33 3.38625 0.15662 3.43637 2.53892 33 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 34 3.23512 2.68809 3.27758 0.15675 34 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 35 3.04470 3.73053 0.10266 3.65047 35 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 36 3.04470 3.73053 0.10266 3.65047 36 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 37 3.04470 3.73053 0.10266 3.65047 37 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 38 2.88303 0.26842 2.66900 2.20610 38 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 39 3.04470 3.73053 0.10266 3.65047 39 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 40 3.23512 2.68809 3.27758 0.15675 40 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 41 3.24277 0.19357 3.29791 2.30284 41 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 42 0.12440 3.52302 2.89399 3.43852 42 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 43 0.23909 2.99369 2.65083 2.38640 43 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 44 2.26597 3.32606 0.19816 3.21653 44 - - 1.38629 1.38629 1.38629 1.38629 0.03387 4.09521 4.09521 1.46634 0.26236 1.09861 0.40547 45 3.44691 0.14283 3.49476 2.64649 45 - - 1.38629 1.38629 1.38629 1.38629 0.01708 4.07842 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwoo_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:06:04 2012 NSEQ 6 EFFN 3.120117 CKSUM 1384330421 STATS LOCAL MSV -8.0965 0.71932 STATS LOCAL VITERBI -7.8574 0.71932 STATS LOCAL FORWARD -3.6227 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.63454 1.21367 1.14412 1.66418 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 0.00000 * 1 2.90013 3.51923 0.12494 3.41691 1 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 2 3.35564 0.13984 3.40831 2.77225 2 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 3 3.35564 0.13984 3.40831 2.77225 3 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 4 3.35564 0.13984 3.40831 2.77225 4 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 5 2.90013 3.51923 0.12494 3.41691 5 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 6 0.15109 3.31317 2.75811 3.20856 6 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 7 2.90013 3.51923 0.12494 3.41691 7 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 8 2.90013 3.51923 0.12494 3.41691 8 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 9 3.35564 0.13984 3.40831 2.77225 9 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 10 3.35564 0.13984 3.40831 2.77225 10 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 11 0.15109 3.31317 2.75811 3.20856 11 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 12 0.15109 3.31317 2.75811 3.20856 12 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 13 3.35564 0.13984 3.40831 2.77225 13 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 14 3.35564 0.13984 3.40831 2.77225 14 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 15 2.90013 3.51923 0.12494 3.41691 15 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 16 2.90013 3.51923 0.12494 3.41691 16 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 17 3.02138 2.55227 3.07208 0.18991 17 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 18 3.35564 0.13984 3.40831 2.77225 18 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 19 0.15109 3.31317 2.75811 3.20856 19 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 20 0.15109 3.31317 2.75811 3.20856 20 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 21 2.90013 3.51923 0.12494 3.41691 21 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 22 2.90013 3.51923 0.12494 3.41691 22 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 23 2.90013 3.51923 0.12494 3.41691 23 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 24 3.35564 0.13984 3.40831 2.77225 24 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 25 0.15109 3.31317 2.75811 3.20856 25 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 26 3.35564 0.13984 3.40831 2.77225 26 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 27 2.90013 3.51923 0.12494 3.41691 27 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 28 3.02138 2.55227 3.07208 0.18991 28 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 29 3.02138 2.55227 3.07208 0.18991 29 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 30 3.02138 2.55227 3.07208 0.18991 30 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 31 3.02138 2.55227 3.07208 0.18991 31 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 32 3.35564 0.13984 3.40831 2.77225 32 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 33 3.35564 0.13984 3.40831 2.77225 33 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 34 3.02138 2.55227 3.07208 0.18991 34 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 35 2.90013 3.51923 0.12494 3.41691 35 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 36 2.90013 3.51923 0.12494 3.41691 36 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 37 2.90013 3.51923 0.12494 3.41691 37 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 38 3.02138 2.55227 3.07208 0.18991 38 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 39 2.90013 3.51923 0.12494 3.41691 39 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 40 3.02138 2.55227 3.07208 0.18991 40 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 41 3.35564 0.13984 3.40831 2.77225 41 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 42 0.15109 3.31317 2.75811 3.20856 42 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 43 0.15109 3.31317 2.75811 3.20856 43 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 44 2.90013 3.51923 0.12494 3.41691 44 - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97408 3.97408 1.46634 0.26236 1.09861 0.40547 45 3.35564 0.13984 3.40831 2.77225 45 - - 1.38629 1.38629 1.38629 1.38629 0.01934 3.95510 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwop_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:06:14 2012 NSEQ 3 EFFN 3.000000 CKSUM 1100070553 STATS LOCAL MSV -8.1489 0.71969 STATS LOCAL VITERBI -7.8550 0.71969 STATS LOCAL FORWARD -3.7050 0.71969 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.55400 1.11344 1.20131 1.83651 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.86982 3.47591 0.13017 3.36931 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.97980 2.52563 3.03204 0.19727 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 0.15719 3.27118 2.73043 3.16274 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.97980 2.52563 3.03204 0.19727 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 3.30705 0.14631 3.36166 2.73626 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.30705 0.14631 3.36166 2.73626 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.15719 3.27118 2.73043 3.16274 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.97980 2.52563 3.03204 0.19727 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 3.30705 0.14631 3.36166 2.73626 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.30705 0.14631 3.36166 2.73626 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.86982 3.47591 0.13017 3.36931 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwoq_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:06:22 2012 NSEQ 3 EFFN 3.000000 CKSUM 4026879485 STATS LOCAL MSV -8.2087 0.71964 STATS LOCAL VITERBI -7.9281 0.71964 STATS LOCAL FORWARD -3.2659 0.71964 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.71764 1.21985 1.04576 1.74978 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.86982 3.47591 0.13017 3.36931 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 0.15719 3.27118 2.73043 3.16274 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.86982 3.47591 0.13017 3.36931 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.97980 2.52563 3.03204 0.19727 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.97980 2.52563 3.03204 0.19727 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 3.30705 0.14631 3.36166 2.73626 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 3.30705 0.14631 3.36166 2.73626 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.86982 3.47591 0.13017 3.36931 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.30705 0.14631 3.36166 2.73626 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.15719 3.27118 2.73043 3.16274 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.30705 0.14631 3.36166 2.73626 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.86982 3.47591 0.13017 3.36931 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.97980 2.52563 3.03204 0.19727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwor_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:06:32 2012 NSEQ 2 EFFN 2.000000 CKSUM 2741897416 STATS LOCAL MSV -7.7301 0.72718 STATS LOCAL VITERBI -8.3714 0.72718 STATS LOCAL FORWARD -3.1304 0.72718 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.83360 1.15080 1.12517 1.61354 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwos_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:06:39 2012 NSEQ 4 EFFN 3.175781 CKSUM 1647101817 STATS LOCAL MSV -8.1934 0.71933 STATS LOCAL VITERBI -7.6964 0.71933 STATS LOCAL FORWARD -3.7242 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.05058 1.08581 1.04413 1.70534 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 0.00000 * 1 2.91360 3.53861 0.12268 3.43825 1 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 2 3.37748 0.13704 3.42926 2.78832 2 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 3 3.37748 0.13704 3.42926 2.78832 3 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 4 3.37748 0.13704 3.42926 2.78832 4 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 5 2.91360 3.53861 0.12268 3.43825 5 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 6 2.91360 3.53861 0.12268 3.43825 6 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 7 0.14843 3.33206 2.77050 3.22920 7 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 8 2.91360 3.53861 0.12268 3.43825 8 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 9 3.37748 0.13704 3.42926 2.78832 9 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 10 3.37748 0.13704 3.42926 2.78832 10 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 11 3.04021 2.56430 3.09020 0.18668 11 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 12 3.04021 2.56430 3.09020 0.18668 12 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 13 3.37748 0.13704 3.42926 2.78832 13 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 14 3.04021 2.56430 3.09020 0.18668 14 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 15 2.91360 3.53861 0.12268 3.43825 15 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 16 2.91360 3.53861 0.12268 3.43825 16 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 17 3.37748 0.13704 3.42926 2.78832 17 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 18 3.37748 0.13704 3.42926 2.78832 18 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 19 2.91360 3.53861 0.12268 3.43825 19 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 20 0.14843 3.33206 2.77050 3.22920 20 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 21 2.91360 3.53861 0.12268 3.43825 21 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 22 2.91360 3.53861 0.12268 3.43825 22 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 23 2.91360 3.53861 0.12268 3.43825 23 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 24 3.37748 0.13704 3.42926 2.78832 24 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 25 0.14843 3.33206 2.77050 3.22920 25 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 26 3.37748 0.13704 3.42926 2.78832 26 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 27 2.91360 3.53861 0.12268 3.43825 27 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 28 3.04021 2.56430 3.09020 0.18668 28 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 29 3.37748 0.13704 3.42926 2.78832 29 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 30 3.04021 2.56430 3.09020 0.18668 30 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 31 2.91360 3.53861 0.12268 3.43825 31 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 32 3.37748 0.13704 3.42926 2.78832 32 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 33 3.37748 0.13704 3.42926 2.78832 33 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 34 3.04021 2.56430 3.09020 0.18668 34 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 35 2.91360 3.53861 0.12268 3.43825 35 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 36 2.91360 3.53861 0.12268 3.43825 36 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 37 2.91360 3.53861 0.12268 3.43825 37 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 38 3.37748 0.13704 3.42926 2.78832 38 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 39 2.91360 3.53861 0.12268 3.43825 39 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 40 3.04021 2.56430 3.09020 0.18668 40 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 41 3.37748 0.13704 3.42926 2.78832 41 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 42 0.14843 3.33206 2.77050 3.22920 42 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 43 2.37895 0.96228 2.45142 0.82289 43 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 44 2.91360 3.53861 0.12268 3.43825 44 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 45 3.37748 0.13704 3.42926 2.78832 45 - - 1.38629 1.38629 1.38629 1.38629 0.01914 3.96571 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwot_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:06:47 2012 NSEQ 3 EFFN 3.000000 CKSUM 3561680478 STATS LOCAL MSV -8.2737 0.71962 STATS LOCAL VITERBI -7.7056 0.71962 STATS LOCAL FORWARD -3.6667 0.71962 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72378 1.06331 1.14947 1.83576 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.86982 3.47591 0.13017 3.36931 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 0.15719 3.27118 2.73043 3.16274 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.86982 3.47591 0.13017 3.36931 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.97980 2.52563 3.03204 0.19727 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 0.15719 3.27118 2.73043 3.16274 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.30705 0.14631 3.36166 2.73626 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 3.30705 0.14631 3.36166 2.73626 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.30705 0.14631 3.36166 2.73626 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.97980 2.52563 3.03204 0.19727 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.30705 0.14631 3.36166 2.73626 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 0.15719 3.27118 2.73043 3.16274 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_twentytwou_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 01:06:56 2012 NSEQ 2 EFFN 2.000000 CKSUM 240493008 STATS LOCAL MSV -7.5228 0.72718 STATS LOCAL VITERBI -8.2769 0.72718 STATS LOCAL FORWARD -3.1256 0.72718 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.83332 1.15081 1.12531 1.61351 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Tracheophyta_58S_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Feb 18 00:55:23 2012 NSEQ 29 EFFN 3.246216 CKSUM 3154564610 STATS LOCAL MSV -8.3504 0.71932 STATS LOCAL VITERBI -7.5845 0.71932 STATS LOCAL FORWARD -3.8947 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.81993 1.14571 1.08965 1.69482 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 0.00000 * 1 2.93015 3.56253 0.11996 3.46460 1 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 2 3.40451 0.13367 3.45517 2.80813 2 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 3 3.40451 0.13367 3.45517 2.80813 3 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 4 3.11719 0.20567 3.17613 2.30386 4 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 5 2.93015 3.56253 0.11996 3.46460 5 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 6 0.14521 3.35547 2.78579 3.25479 6 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 7 0.14521 3.35547 2.78579 3.25479 7 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 8 2.93015 3.56253 0.11996 3.46460 8 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 9 3.40451 0.13367 3.45517 2.80813 9 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 10 3.40451 0.13367 3.45517 2.80813 10 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 11 3.06365 2.57925 3.11275 0.18275 11 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 12 3.06365 2.57925 3.11275 0.18275 12 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 13 3.06365 2.57925 3.11275 0.18275 13 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 14 0.14521 3.35547 2.78579 3.25479 14 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 15 2.93015 3.56253 0.11996 3.46460 15 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 16 2.93015 3.56253 0.11996 3.46460 16 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 17 2.69737 1.80003 2.75945 0.35098 17 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 18 3.40451 0.13367 3.45517 2.80813 18 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 19 2.93015 3.56253 0.11996 3.46460 19 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 20 0.14521 3.35547 2.78579 3.25479 20 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 21 2.93015 3.56253 0.11996 3.46460 21 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 22 2.93015 3.56253 0.11996 3.46460 22 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 23 2.93015 3.56253 0.11996 3.46460 23 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 24 3.40451 0.13367 3.45517 2.80813 24 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 25 0.14521 3.35547 2.78579 3.25479 25 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 26 3.40451 0.13367 3.45517 2.80813 26 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 27 2.93015 3.56253 0.11996 3.46460 27 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 28 2.59719 1.60135 2.66254 0.42446 28 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 29 3.40451 0.13367 3.45517 2.80813 29 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 30 3.06365 2.57925 3.11275 0.18275 30 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 31 2.93015 3.56253 0.11996 3.46460 31 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 32 3.40451 0.13367 3.45517 2.80813 32 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 33 3.40451 0.13367 3.45517 2.80813 33 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 34 3.06365 2.57925 3.11275 0.18275 34 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 35 2.93015 3.56253 0.11996 3.46460 35 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 36 2.93015 3.56253 0.11996 3.46460 36 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 37 2.93015 3.56253 0.11996 3.46460 37 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 38 3.40451 0.13367 3.45517 2.80813 38 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 39 2.93015 3.56253 0.11996 3.46460 39 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 40 3.06365 2.57925 3.11275 0.18275 40 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 41 3.40451 0.13367 3.45517 2.80813 41 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 42 0.14521 3.35547 2.78579 3.25479 42 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 43 3.40451 0.13367 3.45517 2.80813 43 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 44 2.93015 3.56253 0.11996 3.46460 44 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99751 3.99751 1.46634 0.26236 1.09861 0.40547 45 3.40451 0.13367 3.45517 2.80813 45 - - 1.38629 1.38629 1.38629 1.38629 0.01888 3.97897 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_eight_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:00:21 2012 NSEQ 18 EFFN 3.300293 CKSUM 3900505399 STATS LOCAL MSV -8.0180 0.71934 STATS LOCAL VITERBI -7.6250 0.71934 STATS LOCAL FORWARD -4.2046 0.71934 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40393 1.38116 1.37967 1.38063 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 0.00000 * 1 3.08135 2.59052 3.12978 0.17985 1 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 2 2.94250 3.58045 0.11796 3.48436 2 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 3 0.14285 3.37307 2.79725 3.27405 3 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 4 3.42482 0.13120 3.47463 2.82296 4 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 5 3.08135 2.59052 3.12978 0.17985 5 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 6 3.42482 0.13120 3.47463 2.82296 6 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 7 3.08135 2.59052 3.12978 0.17985 7 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 8 3.42482 0.13120 3.47463 2.82296 8 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 9 2.94250 3.58045 0.11796 3.48436 9 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 10 2.94250 3.58045 0.11796 3.48436 10 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 11 3.42482 0.13120 3.47463 2.82296 11 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 12 0.14285 3.37307 2.79725 3.27405 12 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 13 0.14285 3.37307 2.79725 3.27405 13 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 14 2.71603 1.81090 2.77762 0.34507 14 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 15 2.94250 3.58045 0.11796 3.48436 15 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 16 2.94250 3.58045 0.11796 3.48436 16 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 17 0.14285 3.37307 2.79725 3.27405 17 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 18 3.08135 2.59052 3.12978 0.17985 18 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 19 0.14285 3.37307 2.79725 3.27405 19 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 20 3.08135 2.59052 3.12978 0.17985 20 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 21 3.42482 0.13120 3.47463 2.82296 21 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 22 3.08135 2.59052 3.12978 0.17985 22 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 23 3.42482 0.13120 3.47463 2.82296 23 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 24 2.94250 3.58045 0.11796 3.48436 24 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 25 2.94250 3.58045 0.11796 3.48436 25 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 26 3.42482 0.13120 3.47463 2.82296 26 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 27 3.08135 2.59052 3.12978 0.17985 27 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 28 3.42482 0.13120 3.47463 2.82296 28 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 29 3.08135 2.59052 3.12978 0.17985 29 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 30 3.08135 2.59052 3.12978 0.17985 30 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 31 2.94250 3.58045 0.11796 3.48436 31 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 32 3.42482 0.13120 3.47463 2.82296 32 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 33 0.14285 3.37307 2.79725 3.27405 33 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 34 3.08135 2.59052 3.12978 0.17985 34 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 35 3.42482 0.13120 3.47463 2.82296 35 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 36 2.94250 3.58045 0.11796 3.48436 36 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 37 0.14285 3.37307 2.79725 3.27405 37 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 38 3.08135 2.59052 3.12978 0.17985 38 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 39 2.94250 3.58045 0.11796 3.48436 39 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 40 0.14285 3.37307 2.79725 3.27405 40 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 41 0.14285 3.37307 2.79725 3.27405 41 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 42 2.94250 3.58045 0.11796 3.48436 42 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 43 0.14285 3.37307 2.79725 3.27405 43 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 44 0.14285 3.37307 2.79725 3.27405 44 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00739 4.00739 1.46634 0.26236 1.09861 0.40547 45 3.42482 0.13120 3.47463 2.82296 45 - - 1.38629 1.38629 1.38629 1.38629 0.01869 3.98904 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_elevena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:15:03 2012 NSEQ 5 EFFN 3.198242 CKSUM 492245523 STATS LOCAL MSV -8.0269 0.71932 STATS LOCAL VITERBI -7.6136 0.71932 STATS LOCAL FORWARD -3.7504 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34311 1.20704 1.45350 1.57922 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 0.00000 * 1 3.38618 0.13595 3.43760 2.79470 1 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 2 2.91894 3.54631 0.12180 3.44673 2 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 3 0.14739 3.33958 2.77542 3.23743 3 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 4 3.38618 0.13595 3.43760 2.79470 4 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 5 3.04773 2.56910 3.09744 0.18541 5 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 6 3.38618 0.13595 3.43760 2.79470 6 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 7 3.04773 2.56910 3.09744 0.18541 7 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 8 3.38618 0.13595 3.43760 2.79470 8 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 9 2.91894 3.54631 0.12180 3.44673 9 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 10 0.14739 3.33958 2.77542 3.23743 10 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 11 3.38618 0.13595 3.43760 2.79470 11 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 12 0.14739 3.33958 2.77542 3.23743 12 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 13 0.14739 3.33958 2.77542 3.23743 13 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 14 3.38618 0.13595 3.43760 2.79470 14 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 15 2.91894 3.54631 0.12180 3.44673 15 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 16 2.91894 3.54631 0.12180 3.44673 16 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 17 0.14739 3.33958 2.77542 3.23743 17 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 18 3.04773 2.56910 3.09744 0.18541 18 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 19 0.14739 3.33958 2.77542 3.23743 19 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 20 3.04773 2.56910 3.09744 0.18541 20 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 21 3.38618 0.13595 3.43760 2.79470 21 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 22 3.04773 2.56910 3.09744 0.18541 22 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 23 3.38618 0.13595 3.43760 2.79470 23 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 24 2.91894 3.54631 0.12180 3.44673 24 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 25 2.91894 3.54631 0.12180 3.44673 25 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 26 3.38618 0.13595 3.43760 2.79470 26 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 27 3.04773 2.56910 3.09744 0.18541 27 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 28 3.38618 0.13595 3.43760 2.79470 28 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 29 3.04773 2.56910 3.09744 0.18541 29 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 30 3.38618 0.13595 3.43760 2.79470 30 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 31 2.91894 3.54631 0.12180 3.44673 31 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 32 3.38618 0.13595 3.43760 2.79470 32 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 33 0.14739 3.33958 2.77542 3.23743 33 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 34 3.04773 2.56910 3.09744 0.18541 34 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 35 3.38618 0.13595 3.43760 2.79470 35 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 36 2.91894 3.54631 0.12180 3.44673 36 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 37 0.14739 3.33958 2.77542 3.23743 37 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 38 3.04773 2.56910 3.09744 0.18541 38 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 39 2.91894 3.54631 0.12180 3.44673 39 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 40 0.14739 3.33958 2.77542 3.23743 40 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 41 0.14739 3.33958 2.77542 3.23743 41 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 42 2.91894 3.54631 0.12180 3.44673 42 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 43 0.14739 3.33958 2.77542 3.23743 43 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 44 0.14739 3.33958 2.77542 3.23743 44 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 45 3.38618 0.13595 3.43760 2.79470 45 - - 1.38629 1.38629 1.38629 1.38629 0.01905 3.96996 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_elevenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:15:08 2012 NSEQ 6 EFFN 3.249023 CKSUM 1930426942 STATS LOCAL MSV -8.0932 0.71932 STATS LOCAL VITERBI -7.5450 0.71932 STATS LOCAL FORWARD -4.0595 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27768 1.39135 1.44912 1.43632 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 0.00000 * 1 3.06457 2.57984 3.11364 0.18260 1 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 2 2.93080 3.56347 0.11985 3.46564 2 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 3 0.14509 3.35639 2.78639 3.25580 3 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 4 3.40558 0.13354 3.45619 2.80891 4 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 5 3.06457 2.57984 3.11364 0.18260 5 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 6 3.40558 0.13354 3.45619 2.80891 6 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 7 3.06457 2.57984 3.11364 0.18260 7 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 8 3.40558 0.13354 3.45619 2.80891 8 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 9 2.93080 3.56347 0.11985 3.46564 9 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 10 0.14509 3.35639 2.78639 3.25580 10 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 11 3.40558 0.13354 3.45619 2.80891 11 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 12 0.14509 3.35639 2.78639 3.25580 12 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 13 0.14509 3.35639 2.78639 3.25580 13 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 14 3.40558 0.13354 3.45619 2.80891 14 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 15 2.93080 3.56347 0.11985 3.46564 15 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 16 2.93080 3.56347 0.11985 3.46564 16 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 17 0.14509 3.35639 2.78639 3.25580 17 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 18 3.06457 2.57984 3.11364 0.18260 18 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 19 0.14509 3.35639 2.78639 3.25580 19 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 20 3.06457 2.57984 3.11364 0.18260 20 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 21 3.40558 0.13354 3.45619 2.80891 21 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 22 3.06457 2.57984 3.11364 0.18260 22 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 23 0.14509 3.35639 2.78639 3.25580 23 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 24 2.93080 3.56347 0.11985 3.46564 24 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 25 2.93080 3.56347 0.11985 3.46564 25 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 26 3.40558 0.13354 3.45619 2.80891 26 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 27 3.06457 2.57984 3.11364 0.18260 27 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 28 3.40558 0.13354 3.45619 2.80891 28 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 29 3.06457 2.57984 3.11364 0.18260 29 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 30 3.06457 2.57984 3.11364 0.18260 30 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 31 2.93080 3.56347 0.11985 3.46564 31 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 32 3.40558 0.13354 3.45619 2.80891 32 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 33 0.14509 3.35639 2.78639 3.25580 33 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 34 3.06457 2.57984 3.11364 0.18260 34 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 35 3.40558 0.13354 3.45619 2.80891 35 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 36 2.93080 3.56347 0.11985 3.46564 36 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 37 0.14509 3.35639 2.78639 3.25580 37 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 38 3.06457 2.57984 3.11364 0.18260 38 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 39 2.93080 3.56347 0.11985 3.46564 39 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 40 0.14509 3.35639 2.78639 3.25580 40 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 41 0.14509 3.35639 2.78639 3.25580 41 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 42 2.93080 3.56347 0.11985 3.46564 42 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 43 0.14509 3.35639 2.78639 3.25580 43 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 44 0.14509 3.35639 2.78639 3.25580 44 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 45 3.40558 0.13354 3.45619 2.80891 45 - - 1.38629 1.38629 1.38629 1.38629 0.01887 3.97950 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_elevenc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:15:15 2012 NSEQ 4 EFFN 3.175781 CKSUM 329736315 STATS LOCAL MSV -8.1238 0.71932 STATS LOCAL VITERBI -7.6526 0.71932 STATS LOCAL FORWARD -3.7764 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34425 1.15438 1.45439 1.65827 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 0.00000 * 1 3.37748 0.13704 3.42926 2.78832 1 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 2 2.91360 3.53861 0.12268 3.43825 2 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 3 0.14843 3.33206 2.77050 3.22920 3 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 4 3.37748 0.13704 3.42926 2.78832 4 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 5 3.04021 2.56430 3.09020 0.18668 5 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 6 3.37748 0.13704 3.42926 2.78832 6 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 7 3.04021 2.56430 3.09020 0.18668 7 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 8 3.37748 0.13704 3.42926 2.78832 8 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 9 2.91360 3.53861 0.12268 3.43825 9 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 10 0.14843 3.33206 2.77050 3.22920 10 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 11 3.37748 0.13704 3.42926 2.78832 11 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 12 0.14843 3.33206 2.77050 3.22920 12 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 13 0.14843 3.33206 2.77050 3.22920 13 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 14 3.37748 0.13704 3.42926 2.78832 14 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 15 2.91360 3.53861 0.12268 3.43825 15 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 16 2.91360 3.53861 0.12268 3.43825 16 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 17 0.14843 3.33206 2.77050 3.22920 17 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 18 3.04021 2.56430 3.09020 0.18668 18 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 19 0.14843 3.33206 2.77050 3.22920 19 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 20 3.04021 2.56430 3.09020 0.18668 20 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 21 3.37748 0.13704 3.42926 2.78832 21 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 22 3.37748 0.13704 3.42926 2.78832 22 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 23 3.37748 0.13704 3.42926 2.78832 23 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 24 2.91360 3.53861 0.12268 3.43825 24 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 25 2.91360 3.53861 0.12268 3.43825 25 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 26 3.37748 0.13704 3.42926 2.78832 26 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 27 3.04021 2.56430 3.09020 0.18668 27 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 28 3.37748 0.13704 3.42926 2.78832 28 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 29 3.04021 2.56430 3.09020 0.18668 29 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 30 3.37748 0.13704 3.42926 2.78832 30 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 31 2.91360 3.53861 0.12268 3.43825 31 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 32 3.37748 0.13704 3.42926 2.78832 32 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 33 0.14843 3.33206 2.77050 3.22920 33 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 34 3.04021 2.56430 3.09020 0.18668 34 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 35 3.37748 0.13704 3.42926 2.78832 35 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 36 2.91360 3.53861 0.12268 3.43825 36 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 37 0.14843 3.33206 2.77050 3.22920 37 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 38 3.04021 2.56430 3.09020 0.18668 38 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 39 2.91360 3.53861 0.12268 3.43825 39 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 40 0.14843 3.33206 2.77050 3.22920 40 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 41 0.14843 3.33206 2.77050 3.22920 41 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 42 2.91360 3.53861 0.12268 3.43825 42 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 43 0.14843 3.33206 2.77050 3.22920 43 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 44 0.14843 3.33206 2.77050 3.22920 44 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 45 3.37748 0.13704 3.42926 2.78832 45 - - 1.38629 1.38629 1.38629 1.38629 0.01914 3.96571 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_elevend_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:15:21 2012 NSEQ 5 EFFN 3.413086 CKSUM 4236102742 STATS LOCAL MSV -7.4888 0.71931 STATS LOCAL VITERBI -7.5745 0.71931 STATS LOCAL FORWARD -4.1218 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40009 1.35456 1.43150 1.36096 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 0.00000 * 1 3.11748 2.61349 3.16453 0.17409 1 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 2 2.96731 3.61661 0.11405 3.52429 2 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 3 0.13819 3.40877 2.82041 3.31315 3 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 4 3.46593 0.12636 3.51399 2.85283 4 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 5 3.11748 2.61349 3.16453 0.17409 5 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 6 3.46593 0.12636 3.51399 2.85283 6 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 7 3.11748 2.61349 3.16453 0.17409 7 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 8 3.46593 0.12636 3.51399 2.85283 8 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 9 2.96731 3.61661 0.11405 3.52429 9 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 10 2.96731 3.61661 0.11405 3.52429 10 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 11 3.46593 0.12636 3.51399 2.85283 11 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 12 0.13819 3.40877 2.82041 3.31315 12 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 13 0.13819 3.40877 2.82041 3.31315 13 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 14 3.46593 0.12636 3.51399 2.85283 14 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 15 2.96731 3.61661 0.11405 3.52429 15 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 16 2.96731 3.61661 0.11405 3.52429 16 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 17 0.13819 3.40877 2.82041 3.31315 17 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 18 3.11748 2.61349 3.16453 0.17409 18 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 19 0.13819 3.40877 2.82041 3.31315 19 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 20 3.11748 2.61349 3.16453 0.17409 20 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 21 3.46593 0.12636 3.51399 2.85283 21 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 22 3.11748 2.61349 3.16453 0.17409 22 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 23 3.11748 2.61349 3.16453 0.17409 23 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 24 2.10789 0.81520 1.20364 1.99617 24 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 25 2.96731 3.61661 0.11405 3.52429 25 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 26 3.46593 0.12636 3.51399 2.85283 26 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 27 3.11748 2.61349 3.16453 0.17409 27 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 28 3.46593 0.12636 3.51399 2.85283 28 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 29 3.11748 2.61349 3.16453 0.17409 29 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 30 3.11748 2.61349 3.16453 0.17409 30 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 31 2.96731 3.61661 0.11405 3.52429 31 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 32 3.46593 0.12636 3.51399 2.85283 32 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 33 0.13819 3.40877 2.82041 3.31315 33 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 34 3.11748 2.61349 3.16453 0.17409 34 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 35 3.46593 0.12636 3.51399 2.85283 35 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 36 2.96731 3.61661 0.11405 3.52429 36 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 37 0.13819 3.40877 2.82041 3.31315 37 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 38 3.11748 2.61349 3.16453 0.17409 38 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 39 2.96731 3.61661 0.11405 3.52429 39 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 40 0.13819 3.40877 2.82041 3.31315 40 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 41 0.13819 3.40877 2.82041 3.31315 41 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 42 2.96731 3.61661 0.11405 3.52429 42 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 43 0.13819 3.40877 2.82041 3.31315 43 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 44 0.13819 3.40877 2.82041 3.31315 44 - - 1.38629 1.38629 1.38629 1.38629 0.03628 4.02769 4.02769 1.46634 0.26236 1.09861 0.40547 45 3.46593 0.12636 3.51399 2.85283 45 - - 1.38629 1.38629 1.38629 1.38629 0.01831 4.00971 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_elevene_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:15:26 2012 NSEQ 2 EFFN 2.000000 CKSUM 1433949084 STATS LOCAL MSV -7.5231 0.72801 STATS LOCAL VITERBI -8.1368 0.72801 STATS LOCAL FORWARD -3.4187 0.72801 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.29217 1.29112 1.49927 1.48250 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.23862 2.84929 2.43386 2.70756 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_elevenf_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:15:34 2012 NSEQ 3158 EFFN 3.653196 CKSUM 2420636055 STATS LOCAL MSV -7.8226 0.71933 STATS LOCAL VITERBI -7.6855 0.71933 STATS LOCAL FORWARD -3.9132 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.39185 1.23333 1.38511 1.56175 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 0.00000 * 1 2.57583 0.45001 2.63698 1.53848 1 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 2 2.88582 3.63349 0.11775 3.54577 2 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 3 0.13788 3.44636 2.77956 3.35604 3 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 4 3.54821 0.11728 3.59265 2.91207 4 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 5 3.19098 2.66011 3.23517 0.16302 5 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 6 3.42986 0.13697 3.40536 2.77390 6 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 7 3.09775 2.42630 3.14563 0.19426 7 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 8 3.44877 0.13309 3.42268 2.81007 8 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 9 3.01623 3.68846 0.10671 3.60382 9 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 10 2.48283 3.36876 0.17283 3.19955 10 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 11 3.50423 0.12601 3.55014 2.81999 11 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 12 0.12934 3.48051 2.86668 3.39184 12 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 13 0.13749 3.44790 2.78335 3.35766 13 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 14 3.49938 0.12700 3.54546 2.81022 14 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 15 2.92829 3.65209 0.11396 3.56553 15 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 16 2.92829 3.65209 0.11396 3.56553 16 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 17 0.12934 3.48051 2.86668 3.39184 17 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 18 3.19098 2.66011 3.23517 0.16302 18 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 19 0.12934 3.48051 2.86668 3.39184 19 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 20 3.00669 2.63039 3.15909 0.17909 20 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 21 3.47468 0.13208 3.52163 2.76138 21 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 22 3.14563 2.54221 3.19154 0.17774 22 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 23 2.40428 0.27051 2.83402 2.43148 23 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 24 3.01623 3.68846 0.10671 3.60382 24 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 25 2.92872 3.60390 0.11987 3.43317 25 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 26 3.50426 0.12601 3.55016 2.82005 26 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 27 3.11209 2.57957 3.08463 0.18160 27 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 28 3.35857 0.13687 3.41010 2.81184 28 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 29 2.91314 2.56174 3.10427 0.19399 29 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 30 3.25253 0.18463 3.30727 2.37201 30 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 31 2.92597 3.51246 0.12332 3.42391 31 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 32 3.54821 0.11728 3.59265 2.91207 32 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 33 0.13749 3.44790 2.78335 3.35766 33 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 34 3.00658 2.63037 3.15904 0.17910 34 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 35 3.48190 0.13058 3.52860 2.77550 35 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 36 2.92829 3.65209 0.11396 3.56553 36 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 37 0.13762 3.44739 2.78209 3.35712 37 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 38 3.16097 2.58108 3.20628 0.17267 38 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 39 2.93744 3.44619 0.13024 3.29028 39 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 40 0.12934 3.48051 2.86668 3.39184 40 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 41 0.12934 3.48051 2.86668 3.39184 41 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 42 2.89162 3.48850 0.12826 3.37134 42 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 43 0.13762 3.44739 2.78209 3.35712 43 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 44 0.13812 3.44543 2.77725 3.35505 44 - - 1.38629 1.38629 1.38629 1.38629 0.03477 4.06960 4.06960 1.46634 0.26236 1.09861 0.40547 45 3.50165 0.12654 3.54765 2.81479 45 - - 1.38629 1.38629 1.38629 1.38629 0.01753 4.05237 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_fivea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:56:00 2012 NSEQ 2 EFFN 2.000000 CKSUM 501771485 STATS LOCAL MSV -7.3842 0.72813 STATS LOCAL VITERBI -8.0347 0.72813 STATS LOCAL FORWARD -3.2361 0.72813 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.29099 1.34237 1.49789 1.42639 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23862 2.84929 2.43386 2.70756 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_fiveb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:56:11 2012 NSEQ 2 EFFN 2.000000 CKSUM 3891266361 STATS LOCAL MSV -7.4753 0.72874 STATS LOCAL VITERBI -8.0224 0.72874 STATS LOCAL FORWARD -3.8081 0.72874 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.23536 1.43285 1.49047 1.40497 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.23862 2.84929 2.43386 2.70756 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.15554 1.00938 2.23102 0.88601 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_fivec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:56:17 2012 NSEQ 2 EFFN 2.000000 CKSUM 173117858 STATS LOCAL MSV -7.4090 0.72884 STATS LOCAL VITERBI -8.1631 0.72884 STATS LOCAL FORWARD -3.4359 0.72884 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33846 1.31931 1.47459 1.42064 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 1.88179 1.10717 1.04597 1.79675 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_fived_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:56:22 2012 NSEQ 5 EFFN 3.315430 CKSUM 2978653859 STATS LOCAL MSV -8.0586 0.71933 STATS LOCAL VITERBI -7.5706 0.71933 STATS LOCAL FORWARD -4.2608 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33912 1.45202 1.52718 1.24939 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 0.00000 * 1 3.08626 2.59365 3.13451 0.17906 1 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 2 2.94591 3.58540 0.11742 3.48982 2 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 3 0.14220 3.37794 2.80041 3.27938 3 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 4 3.43043 0.13053 3.48000 2.82705 4 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 5 3.08626 2.59365 3.13451 0.17906 5 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 6 3.43043 0.13053 3.48000 2.82705 6 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 7 3.08626 2.59365 3.13451 0.17906 7 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 8 3.43043 0.13053 3.48000 2.82705 8 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 9 0.14220 3.37794 2.80041 3.27938 9 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 10 2.94591 3.58540 0.11742 3.48982 10 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 11 3.43043 0.13053 3.48000 2.82705 11 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 12 0.14220 3.37794 2.80041 3.27938 12 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 13 0.14220 3.37794 2.80041 3.27938 13 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 14 3.08626 2.59365 3.13451 0.17906 14 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 15 2.94591 3.58540 0.11742 3.48982 15 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 16 2.94591 3.58540 0.11742 3.48982 16 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 17 0.14220 3.37794 2.80041 3.27938 17 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 18 3.08626 2.59365 3.13451 0.17906 18 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 19 0.14220 3.37794 2.80041 3.27938 19 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 20 3.08626 2.59365 3.13451 0.17906 20 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 21 3.43043 0.13053 3.48000 2.82705 21 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 22 3.08626 2.59365 3.13451 0.17906 22 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 23 3.43043 0.13053 3.48000 2.82705 23 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 24 3.08626 2.59365 3.13451 0.17906 24 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 25 2.94591 3.58540 0.11742 3.48982 25 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 26 3.43043 0.13053 3.48000 2.82705 26 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 27 3.08626 2.59365 3.13451 0.17906 27 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 28 3.43043 0.13053 3.48000 2.82705 28 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 29 3.08626 2.59365 3.13451 0.17906 29 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 30 3.08626 2.59365 3.13451 0.17906 30 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 31 2.94591 3.58540 0.11742 3.48982 31 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 32 3.43043 0.13053 3.48000 2.82705 32 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 33 0.14220 3.37794 2.80041 3.27938 33 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 34 3.08626 2.59365 3.13451 0.17906 34 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 35 3.08626 2.59365 3.13451 0.17906 35 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 36 2.94591 3.58540 0.11742 3.48982 36 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 37 0.14220 3.37794 2.80041 3.27938 37 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 38 3.08626 2.59365 3.13451 0.17906 38 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 39 2.94591 3.58540 0.11742 3.48982 39 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 40 0.14220 3.37794 2.80041 3.27938 40 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 41 0.14220 3.37794 2.80041 3.27938 41 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 42 2.94591 3.58540 0.11742 3.48982 42 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 43 0.14220 3.37794 2.80041 3.27938 43 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 44 0.14220 3.37794 2.80041 3.27938 44 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 45 3.43043 0.13053 3.48000 2.82705 45 - - 1.38629 1.38629 1.38629 1.38629 0.01864 3.99184 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_fivee_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:56:29 2012 NSEQ 2 EFFN 2.000000 CKSUM 1491573942 STATS LOCAL MSV -7.4671 0.72818 STATS LOCAL VITERBI -8.1834 0.72818 STATS LOCAL FORWARD -3.2586 0.72818 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.19248 1.28747 1.64165 1.48324 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.23862 2.84929 2.43386 2.70756 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23862 2.84929 2.43386 2.70756 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_fivef_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:56:33 2012 NSEQ 2 EFFN 2.000000 CKSUM 984617909 STATS LOCAL MSV -7.5814 0.72836 STATS LOCAL VITERBI -8.2385 0.72836 STATS LOCAL FORWARD -3.3826 0.72836 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34307 1.39264 1.49794 1.32070 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.23862 2.84929 2.43386 2.70756 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.57915 2.25909 2.64442 0.28946 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.57915 2.25909 2.64442 0.28946 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_fiveg_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:56:41 2012 NSEQ 2 EFFN 2.000000 CKSUM 3312256803 STATS LOCAL MSV -7.4483 0.72806 STATS LOCAL VITERBI -8.3980 0.72806 STATS LOCAL FORWARD -3.4369 0.72806 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.45962 1.33786 1.37657 1.37506 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_fiveh_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:56:46 2012 NSEQ 3 EFFN 3.000000 CKSUM 4174493381 STATS LOCAL MSV -8.1279 0.72052 STATS LOCAL VITERBI -7.7403 0.72052 STATS LOCAL FORWARD -4.4656 0.72052 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40219 1.52691 1.37723 1.25717 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.97980 2.52563 3.03204 0.19727 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.15719 3.27118 2.73043 3.16274 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.97980 2.52563 3.03204 0.19727 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 0.15719 3.27118 2.73043 3.16274 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.30705 0.14631 3.36166 2.73626 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.15719 3.27118 2.73043 3.16274 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.15719 3.27118 2.73043 3.16274 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.97980 2.52563 3.03204 0.19727 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.30705 0.14631 3.36166 2.73626 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.97980 2.52563 3.03204 0.19727 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.97980 2.52563 3.03204 0.19727 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.86982 3.47591 0.13017 3.36931 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.97980 2.52563 3.03204 0.19727 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.97980 2.52563 3.03204 0.19727 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 0.15719 3.27118 2.73043 3.16274 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.15719 3.27118 2.73043 3.16274 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.86982 3.47591 0.13017 3.36931 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.86982 3.47591 0.13017 3.36931 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_fivei_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:56:52 2012 NSEQ 210 EFFN 4.367523 CKSUM 2838594260 STATS LOCAL MSV -7.0126 0.71932 STATS LOCAL VITERBI -7.5941 0.71932 STATS LOCAL FORWARD -4.2002 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40037 1.31676 1.37571 1.45743 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 0.00000 * 1 2.06832 0.85930 1.87569 1.21438 1 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 2 2.21347 3.41443 0.19689 3.31032 2 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 3 0.10951 3.66353 2.98433 3.59304 3 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 4 3.75517 0.09755 3.79001 3.05864 4 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 5 3.38437 2.78305 3.42094 0.13746 5 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 6 3.75517 0.09755 3.79001 3.05864 6 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 7 3.20676 2.31317 3.25195 0.19618 7 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 8 3.66275 0.11496 3.70176 2.84291 8 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 9 2.49528 3.58698 0.15135 3.49677 9 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 10 0.89228 2.68555 0.81279 2.54492 10 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 11 3.75517 0.09755 3.79001 3.05864 11 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 12 0.10951 3.66353 2.98433 3.59304 12 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 13 0.10951 3.66353 2.98433 3.59304 13 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 14 2.82816 1.56588 2.88915 0.39104 14 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 15 2.95597 3.80384 0.10338 3.73372 15 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 16 2.85847 3.54253 0.12043 3.60575 16 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 17 0.10951 3.66353 2.98433 3.59304 17 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 18 3.38437 2.78305 3.42094 0.13746 18 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 19 0.10951 3.66353 2.98433 3.59304 19 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 20 3.38437 2.78305 3.42094 0.13746 20 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 21 3.75517 0.09755 3.79001 3.05864 21 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 22 3.38437 2.78305 3.42094 0.13746 22 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 23 2.22540 0.66248 2.48298 1.22789 23 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 24 3.13660 3.86684 0.09067 3.80190 24 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 25 3.04672 3.52420 0.11688 3.40166 25 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 26 3.75517 0.09755 3.79001 3.05864 26 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 27 3.38437 2.78305 3.42094 0.13746 27 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 28 3.75517 0.09755 3.79001 3.05864 28 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 29 3.34206 2.65762 3.38062 0.15025 29 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 30 2.92715 0.35120 2.99176 1.64813 30 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 31 3.13660 3.86684 0.09067 3.80190 31 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 32 3.75517 0.09755 3.79001 3.05864 32 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 33 0.12502 3.60124 2.80014 3.52587 33 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 34 3.38437 2.78305 3.42094 0.13746 34 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 35 3.67538 0.11251 3.71382 2.87022 35 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 36 3.13660 3.86684 0.09067 3.80190 36 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 37 0.10951 3.66353 2.98433 3.59304 37 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 38 3.38437 2.78305 3.42094 0.13746 38 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 39 3.13660 3.86684 0.09067 3.80190 39 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 40 0.10951 3.66353 2.98433 3.59304 40 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 41 0.10951 3.66353 2.98433 3.59304 41 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 42 3.13660 3.86684 0.09067 3.80190 42 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 43 0.10951 3.66353 2.98433 3.59304 43 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 44 1.34862 2.84454 0.48510 2.70893 44 - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18472 4.18472 1.46634 0.26236 1.09861 0.40547 45 3.67026 0.11350 3.70893 2.85909 45 - - 1.38629 1.38629 1.38629 1.38629 0.01558 4.16938 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_fivej_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:56:56 2012 NSEQ 33 EFFN 3.258911 CKSUM 3363897177 STATS LOCAL MSV -7.9849 0.71934 STATS LOCAL VITERBI -7.6114 0.71934 STATS LOCAL FORWARD -4.3755 0.71934 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.47461 1.45701 1.31474 1.31061 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 0.00000 * 1 3.06783 2.58191 3.11677 0.18206 1 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 2 2.93308 3.56677 0.11948 3.46928 2 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 3 0.14465 3.35963 2.78850 3.25935 3 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 4 3.40931 0.13308 3.45978 2.81164 4 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 5 3.06783 2.58191 3.11677 0.18206 5 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 6 3.40931 0.13308 3.45978 2.81164 6 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 7 3.40931 0.13308 3.45978 2.81164 7 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 8 3.06783 2.58191 3.11677 0.18206 8 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 9 2.93308 3.56677 0.11948 3.46928 9 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 10 2.93308 3.56677 0.11948 3.46928 10 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 11 3.40931 0.13308 3.45978 2.81164 11 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 12 0.14465 3.35963 2.78850 3.25935 12 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 13 0.14465 3.35963 2.78850 3.25935 13 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 14 3.06783 2.58191 3.11677 0.18206 14 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 15 2.93308 3.56677 0.11948 3.46928 15 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 16 2.93308 3.56677 0.11948 3.46928 16 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 17 0.14465 3.35963 2.78850 3.25935 17 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 18 3.06783 2.58191 3.11677 0.18206 18 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 19 0.14465 3.35963 2.78850 3.25935 19 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 20 3.06783 2.58191 3.11677 0.18206 20 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 21 3.40931 0.13308 3.45978 2.81164 21 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 22 3.06783 2.58191 3.11677 0.18206 22 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 23 3.06783 2.58191 3.11677 0.18206 23 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 24 2.93308 3.56677 0.11948 3.46928 24 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 25 2.93308 3.56677 0.11948 3.46928 25 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 26 3.40931 0.13308 3.45978 2.81164 26 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 27 3.06783 2.58191 3.11677 0.18206 27 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 28 3.40931 0.13308 3.45978 2.81164 28 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 29 3.06783 2.58191 3.11677 0.18206 29 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 30 3.40931 0.13308 3.45978 2.81164 30 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 31 2.93308 3.56677 0.11948 3.46928 31 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 32 3.06783 2.58191 3.11677 0.18206 32 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 33 2.93308 3.56677 0.11948 3.46928 33 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 34 3.06783 2.58191 3.11677 0.18206 34 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 35 3.40931 0.13308 3.45978 2.81164 35 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 36 2.93308 3.56677 0.11948 3.46928 36 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 37 0.14465 3.35963 2.78850 3.25935 37 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 38 3.06783 2.58191 3.11677 0.18206 38 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 39 2.93308 3.56677 0.11948 3.46928 39 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 40 0.14465 3.35963 2.78850 3.25935 40 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 41 0.14465 3.35963 2.78850 3.25935 41 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 42 2.93308 3.56677 0.11948 3.46928 42 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 43 0.14465 3.35963 2.78850 3.25935 43 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 44 0.14465 3.35963 2.78850 3.25935 44 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99983 3.99983 1.46634 0.26236 1.09861 0.40547 45 3.40931 0.13308 3.45978 2.81164 45 - - 1.38629 1.38629 1.38629 1.38629 0.01884 3.98135 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_fivek_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:57:01 2012 NSEQ 50 EFFN 3.543091 CKSUM 2127064808 STATS LOCAL MSV -7.5080 0.71932 STATS LOCAL VITERBI -7.6308 0.71932 STATS LOCAL FORWARD -3.8861 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.39994 1.20823 1.38023 1.59384 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 0.00000 * 1 2.86575 0.31993 2.93116 1.81078 1 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 2 2.99441 3.65633 0.10993 3.56823 2 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 3 0.13323 3.44830 2.84594 3.35649 3 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 4 3.51133 0.12125 3.55740 2.88560 4 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 5 3.15782 2.63909 3.20331 0.16791 5 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 6 3.51133 0.12125 3.55740 2.88560 6 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 7 3.15782 2.63909 3.20331 0.16791 7 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 8 3.51133 0.12125 3.55740 2.88560 8 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 9 2.99441 3.65633 0.10993 3.56823 9 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 10 2.99441 3.65633 0.10993 3.56823 10 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 11 3.51133 0.12125 3.55740 2.88560 11 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 12 0.13323 3.44830 2.84594 3.35649 12 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 13 0.13323 3.44830 2.84594 3.35649 13 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 14 3.51133 0.12125 3.55740 2.88560 14 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 15 2.99441 3.65633 0.10993 3.56823 15 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 16 2.99441 3.65633 0.10993 3.56823 16 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 17 0.13323 3.44830 2.84594 3.35649 17 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 18 3.15782 2.63909 3.20331 0.16791 18 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 19 0.13323 3.44830 2.84594 3.35649 19 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 20 3.15782 2.63909 3.20331 0.16791 20 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 21 3.51133 0.12125 3.55740 2.88560 21 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 22 3.15782 2.63909 3.20331 0.16791 22 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 23 3.51133 0.12125 3.55740 2.88560 23 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 24 2.99441 3.65633 0.10993 3.56823 24 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 25 2.99441 3.65633 0.10993 3.56823 25 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 26 3.51133 0.12125 3.55740 2.88560 26 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 27 2.76636 1.79629 2.82691 0.33968 27 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 28 3.51133 0.12125 3.55740 2.88560 28 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 29 3.15782 2.63909 3.20331 0.16791 29 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 30 3.35467 0.15484 3.40598 2.58554 30 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 31 2.46606 3.38987 0.16971 3.28447 31 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 32 3.23974 0.18362 3.29488 2.39143 32 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 33 3.23974 0.18362 3.29488 2.39143 33 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 34 0.16997 3.24763 2.75938 2.91677 34 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 35 3.24462 0.16325 3.04612 2.74743 35 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 36 2.99441 3.65633 0.10993 3.56823 36 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 37 0.13323 3.44830 2.84594 3.35649 37 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 38 3.15782 2.63909 3.20331 0.16791 38 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 39 2.99441 3.65633 0.10993 3.56823 39 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 40 0.13323 3.44830 2.84594 3.35649 40 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 41 0.13323 3.44830 2.84594 3.35649 41 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 42 2.99441 3.65633 0.10993 3.56823 42 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 43 0.13323 3.44830 2.84594 3.35649 43 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 44 0.13323 3.44830 2.84594 3.35649 44 - - 1.38629 1.38629 1.38629 1.38629 0.03545 4.05058 4.05058 1.46634 0.26236 1.09861 0.40547 45 2.62759 1.52536 2.69282 0.44236 45 - - 1.38629 1.38629 1.38629 1.38629 0.01788 4.03302 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_ninea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:12:28 2012 NSEQ 18 EFFN 3.229980 CKSUM 3069628549 STATS LOCAL MSV -8.0656 0.71932 STATS LOCAL VITERBI -7.7526 0.71932 STATS LOCAL FORWARD -4.0010 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40657 1.32294 1.38185 1.43736 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 0.00000 * 1 3.39834 0.13443 3.44926 2.80362 1 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 2 2.92638 3.55708 0.12057 3.45859 2 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 3 0.14594 3.35012 2.78230 3.24895 3 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 4 3.39834 0.13443 3.44926 2.80362 4 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 5 3.05828 2.57583 3.10759 0.18364 5 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 6 3.39834 0.13443 3.44926 2.80362 6 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 7 3.05828 2.57583 3.10759 0.18364 7 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 8 3.05828 2.57583 3.10759 0.18364 8 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 9 2.92638 3.55708 0.12057 3.45859 9 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 10 2.92638 3.55708 0.12057 3.45859 10 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 11 3.39834 0.13443 3.44926 2.80362 11 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 12 0.14594 3.35012 2.78230 3.24895 12 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 13 0.14594 3.35012 2.78230 3.24895 13 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 14 3.39834 0.13443 3.44926 2.80362 14 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 15 2.92638 3.55708 0.12057 3.45859 15 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 16 2.92638 3.55708 0.12057 3.45859 16 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 17 0.14594 3.35012 2.78230 3.24895 17 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 18 3.05828 2.57583 3.10759 0.18364 18 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 19 0.14594 3.35012 2.78230 3.24895 19 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 20 3.05828 2.57583 3.10759 0.18364 20 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 21 3.39834 0.13443 3.44926 2.80362 21 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 22 3.05828 2.57583 3.10759 0.18364 22 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 23 3.05828 2.57583 3.10759 0.18364 23 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 24 2.92638 3.55708 0.12057 3.45859 24 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 25 2.92638 3.55708 0.12057 3.45859 25 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 26 3.39834 0.13443 3.44926 2.80362 26 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 27 3.05828 2.57583 3.10759 0.18364 27 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 28 3.39834 0.13443 3.44926 2.80362 28 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 29 3.05828 2.57583 3.10759 0.18364 29 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 30 3.39834 0.13443 3.44926 2.80362 30 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 31 2.92638 3.55708 0.12057 3.45859 31 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 32 3.39834 0.13443 3.44926 2.80362 32 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 33 0.14594 3.35012 2.78230 3.24895 33 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 34 3.05828 2.57583 3.10759 0.18364 34 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 35 3.39834 0.13443 3.44926 2.80362 35 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 36 2.92638 3.55708 0.12057 3.45859 36 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 37 0.14594 3.35012 2.78230 3.24895 37 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 38 3.05828 2.57583 3.10759 0.18364 38 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 39 2.92638 3.55708 0.12057 3.45859 39 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 40 0.14594 3.35012 2.78230 3.24895 40 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 41 0.14594 3.35012 2.78230 3.24895 41 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 42 2.92638 3.55708 0.12057 3.45859 42 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 43 0.14594 3.35012 2.78230 3.24895 43 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 44 0.14594 3.35012 2.78230 3.24895 44 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99452 3.99452 1.46634 0.26236 1.09861 0.40547 45 3.39834 0.13443 3.44926 2.80362 45 - - 1.38629 1.38629 1.38629 1.38629 0.01894 3.97593 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_nineb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:12:35 2012 NSEQ 5 EFFN 3.227539 CKSUM 4226317241 STATS LOCAL MSV -7.9655 0.71933 STATS LOCAL VITERBI -7.5560 0.71933 STATS LOCAL FORWARD -4.1456 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40657 1.32285 1.38184 1.43748 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 0.00000 * 1 3.39741 0.13455 3.44837 2.80294 1 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 2 2.92582 3.55626 0.12066 3.45768 2 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 3 0.14605 3.34931 2.78177 3.24806 3 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 4 3.39741 0.13455 3.44837 2.80294 4 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 5 3.05748 2.57532 3.10682 0.18378 5 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 6 3.39741 0.13455 3.44837 2.80294 6 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 7 3.05748 2.57532 3.10682 0.18378 7 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 8 3.39741 0.13455 3.44837 2.80294 8 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 9 2.92582 3.55626 0.12066 3.45768 9 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 10 2.92582 3.55626 0.12066 3.45768 10 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 11 3.39741 0.13455 3.44837 2.80294 11 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 12 0.14605 3.34931 2.78177 3.24806 12 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 13 0.14605 3.34931 2.78177 3.24806 13 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 14 3.39741 0.13455 3.44837 2.80294 14 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 15 2.92582 3.55626 0.12066 3.45768 15 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 16 2.92582 3.55626 0.12066 3.45768 16 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 17 0.14605 3.34931 2.78177 3.24806 17 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 18 3.05748 2.57532 3.10682 0.18378 18 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 19 0.14605 3.34931 2.78177 3.24806 19 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 20 3.05748 2.57532 3.10682 0.18378 20 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 21 3.39741 0.13455 3.44837 2.80294 21 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 22 3.05748 2.57532 3.10682 0.18378 22 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 23 3.05748 2.57532 3.10682 0.18378 23 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 24 2.92582 3.55626 0.12066 3.45768 24 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 25 2.92582 3.55626 0.12066 3.45768 25 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 26 3.39741 0.13455 3.44837 2.80294 26 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 27 3.05748 2.57532 3.10682 0.18378 27 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 28 3.39741 0.13455 3.44837 2.80294 28 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 29 3.05748 2.57532 3.10682 0.18378 29 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 30 3.05748 2.57532 3.10682 0.18378 30 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 31 2.92582 3.55626 0.12066 3.45768 31 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 32 3.39741 0.13455 3.44837 2.80294 32 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 33 0.14605 3.34931 2.78177 3.24806 33 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 34 3.05748 2.57532 3.10682 0.18378 34 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 35 3.39741 0.13455 3.44837 2.80294 35 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 36 2.92582 3.55626 0.12066 3.45768 36 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 37 0.14605 3.34931 2.78177 3.24806 37 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 38 3.05748 2.57532 3.10682 0.18378 38 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 39 2.92582 3.55626 0.12066 3.45768 39 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 40 0.14605 3.34931 2.78177 3.24806 40 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 41 0.14605 3.34931 2.78177 3.24806 41 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 42 2.92582 3.55626 0.12066 3.45768 42 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 43 0.14605 3.34931 2.78177 3.24806 43 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 44 0.14605 3.34931 2.78177 3.24806 44 - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99407 3.99407 1.46634 0.26236 1.09861 0.40547 45 3.39741 0.13455 3.44837 2.80294 45 - - 1.38629 1.38629 1.38629 1.38629 0.01895 3.97547 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_ninec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:13:12 2012 NSEQ 8 EFFN 3.324219 CKSUM 3298544435 STATS LOCAL MSV -8.1167 0.71931 STATS LOCAL VITERBI -7.6959 0.71931 STATS LOCAL FORWARD -3.8829 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40353 1.30597 1.37945 1.46255 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 0.00000 * 1 3.43368 0.13014 3.48311 2.82941 1 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 2 2.94787 3.58825 0.11710 3.49298 2 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 3 0.14183 3.38075 2.80224 3.28247 3 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 4 3.43368 0.13014 3.48311 2.82941 4 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 5 3.08911 2.59546 3.13724 0.17860 5 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 6 3.43368 0.13014 3.48311 2.82941 6 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 7 3.08911 2.59546 3.13724 0.17860 7 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 8 3.43368 0.13014 3.48311 2.82941 8 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 9 2.94787 3.58825 0.11710 3.49298 9 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 10 2.94787 3.58825 0.11710 3.49298 10 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 11 3.43368 0.13014 3.48311 2.82941 11 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 12 0.14183 3.38075 2.80224 3.28247 12 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 13 0.14183 3.38075 2.80224 3.28247 13 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 14 3.43368 0.13014 3.48311 2.82941 14 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 15 2.94787 3.58825 0.11710 3.49298 15 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 16 2.94787 3.58825 0.11710 3.49298 16 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 17 0.14183 3.38075 2.80224 3.28247 17 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 18 3.08911 2.59546 3.13724 0.17860 18 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 19 0.14183 3.38075 2.80224 3.28247 19 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 20 3.08911 2.59546 3.13724 0.17860 20 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 21 3.43368 0.13014 3.48311 2.82941 21 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 22 3.08911 2.59546 3.13724 0.17860 22 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 23 2.46372 1.24860 2.53351 0.60039 23 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 24 2.94787 3.58825 0.11710 3.49298 24 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 25 2.94787 3.58825 0.11710 3.49298 25 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 26 3.08911 2.59546 3.13724 0.17860 26 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 27 3.08911 2.59546 3.13724 0.17860 27 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 28 3.43368 0.13014 3.48311 2.82941 28 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 29 3.08911 2.59546 3.13724 0.17860 29 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 30 3.43368 0.13014 3.48311 2.82941 30 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 31 2.94787 3.58825 0.11710 3.49298 31 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 32 3.43368 0.13014 3.48311 2.82941 32 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 33 0.14183 3.38075 2.80224 3.28247 33 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 34 3.08911 2.59546 3.13724 0.17860 34 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 35 3.43368 0.13014 3.48311 2.82941 35 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 36 2.94787 3.58825 0.11710 3.49298 36 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 37 0.14183 3.38075 2.80224 3.28247 37 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 38 3.08911 2.59546 3.13724 0.17860 38 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 39 2.94787 3.58825 0.11710 3.49298 39 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 40 0.14183 3.38075 2.80224 3.28247 40 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 41 0.14183 3.38075 2.80224 3.28247 41 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 42 2.94787 3.58825 0.11710 3.49298 42 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 43 0.14183 3.38075 2.80224 3.28247 43 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 44 0.14183 3.38075 2.80224 3.28247 44 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 45 3.43368 0.13014 3.48311 2.82941 45 - - 1.38629 1.38629 1.38629 1.38629 0.01861 3.99346 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_nined_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:13:19 2012 NSEQ 2 EFFN 2.000000 CKSUM 1082156861 STATS LOCAL MSV -7.3499 0.72787 STATS LOCAL VITERBI -8.1292 0.72787 STATS LOCAL FORWARD -3.4541 0.72787 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.45932 1.34452 1.31900 1.42905 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_ninee_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:13:26 2012 NSEQ 6 EFFN 3.231445 CKSUM 4098161730 STATS LOCAL MSV -8.0790 0.71932 STATS LOCAL VITERBI -7.6106 0.71932 STATS LOCAL FORWARD -4.0689 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40654 1.32502 1.38182 1.43509 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 0.00000 * 1 3.05877 2.57614 3.10806 0.18356 1 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 2 2.92673 3.55757 0.12052 3.45913 2 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 3 0.14587 3.35060 2.78262 3.24948 3 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 4 3.39890 0.13436 3.44980 2.80403 4 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 5 3.05877 2.57614 3.10806 0.18356 5 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 6 3.39890 0.13436 3.44980 2.80403 6 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 7 3.05877 2.57614 3.10806 0.18356 7 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 8 3.39890 0.13436 3.44980 2.80403 8 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 9 2.92673 3.55757 0.12052 3.45913 9 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 10 2.92673 3.55757 0.12052 3.45913 10 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 11 3.39890 0.13436 3.44980 2.80403 11 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 12 0.14587 3.35060 2.78262 3.24948 12 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 13 0.14587 3.35060 2.78262 3.24948 13 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 14 3.39890 0.13436 3.44980 2.80403 14 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 15 2.92673 3.55757 0.12052 3.45913 15 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 16 2.92673 3.55757 0.12052 3.45913 16 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 17 0.14587 3.35060 2.78262 3.24948 17 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 18 3.05877 2.57614 3.10806 0.18356 18 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 19 0.14587 3.35060 2.78262 3.24948 19 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 20 3.05877 2.57614 3.10806 0.18356 20 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 21 3.39890 0.13436 3.44980 2.80403 21 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 22 3.05877 2.57614 3.10806 0.18356 22 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 23 3.39890 0.13436 3.44980 2.80403 23 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 24 2.92673 3.55757 0.12052 3.45913 24 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 25 2.92673 3.55757 0.12052 3.45913 25 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 26 3.39890 0.13436 3.44980 2.80403 26 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 27 3.05877 2.57614 3.10806 0.18356 27 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 28 3.39890 0.13436 3.44980 2.80403 28 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 29 3.05877 2.57614 3.10806 0.18356 29 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 30 3.05877 2.57614 3.10806 0.18356 30 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 31 2.92673 3.55757 0.12052 3.45913 31 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 32 3.39890 0.13436 3.44980 2.80403 32 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 33 0.14587 3.35060 2.78262 3.24948 33 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 34 3.05877 2.57614 3.10806 0.18356 34 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 35 3.39890 0.13436 3.44980 2.80403 35 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 36 2.92673 3.55757 0.12052 3.45913 36 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 37 0.14587 3.35060 2.78262 3.24948 37 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 38 3.05877 2.57614 3.10806 0.18356 38 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 39 2.92673 3.55757 0.12052 3.45913 39 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 40 0.14587 3.35060 2.78262 3.24948 40 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 41 0.14587 3.35060 2.78262 3.24948 41 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 42 2.92673 3.55757 0.12052 3.45913 42 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 43 0.14587 3.35060 2.78262 3.24948 43 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 44 0.14587 3.35060 2.78262 3.24948 44 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 45 3.39890 0.13436 3.44980 2.80403 45 - - 1.38629 1.38629 1.38629 1.38629 0.01893 3.97621 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_ninef_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:13:31 2012 NSEQ 10 EFFN 3.325195 CKSUM 4174405568 STATS LOCAL MSV -8.2243 0.71932 STATS LOCAL VITERBI -7.7459 0.71932 STATS LOCAL FORWARD -3.8937 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.37952 1.26100 1.37730 1.54801 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 0.00000 * 1 0.97492 2.14294 2.15833 0.94174 1 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 2 2.94809 3.58857 0.11707 3.49333 2 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 3 0.14179 3.38107 2.80245 3.28281 3 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 4 3.43404 0.13010 3.48346 2.82967 4 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 5 3.08942 2.59566 3.13755 0.17855 5 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 6 3.43404 0.13010 3.48346 2.82967 6 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 7 3.08942 2.59566 3.13755 0.17855 7 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 8 3.43404 0.13010 3.48346 2.82967 8 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 9 2.94809 3.58857 0.11707 3.49333 9 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 10 2.94809 3.58857 0.11707 3.49333 10 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 11 3.43404 0.13010 3.48346 2.82967 11 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 12 0.14179 3.38107 2.80245 3.28281 12 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 13 0.14179 3.38107 2.80245 3.28281 13 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 14 3.43404 0.13010 3.48346 2.82967 14 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 15 2.94809 3.58857 0.11707 3.49333 15 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 16 2.94809 3.58857 0.11707 3.49333 16 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 17 0.14179 3.38107 2.80245 3.28281 17 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 18 3.08942 2.59566 3.13755 0.17855 18 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 19 0.14179 3.38107 2.80245 3.28281 19 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 20 3.08942 2.59566 3.13755 0.17855 20 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 21 3.43404 0.13010 3.48346 2.82967 21 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 22 3.08942 2.59566 3.13755 0.17855 22 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 23 3.43404 0.13010 3.48346 2.82967 23 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 24 2.94809 3.58857 0.11707 3.49333 24 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 25 2.94809 3.58857 0.11707 3.49333 25 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 26 3.43404 0.13010 3.48346 2.82967 26 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 27 3.08942 2.59566 3.13755 0.17855 27 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 28 3.43404 0.13010 3.48346 2.82967 28 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 29 3.08942 2.59566 3.13755 0.17855 29 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 30 3.43404 0.13010 3.48346 2.82967 30 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 31 2.94809 3.58857 0.11707 3.49333 31 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 32 3.43404 0.13010 3.48346 2.82967 32 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 33 0.14179 3.38107 2.80245 3.28281 33 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 34 3.08942 2.59566 3.13755 0.17855 34 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 35 3.43404 0.13010 3.48346 2.82967 35 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 36 2.94809 3.58857 0.11707 3.49333 36 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 37 0.14179 3.38107 2.80245 3.28281 37 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 38 3.08942 2.59566 3.13755 0.17855 38 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 39 2.94809 3.58857 0.11707 3.49333 39 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 40 0.14179 3.38107 2.80245 3.28281 40 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 41 0.14179 3.38107 2.80245 3.28281 41 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 42 2.94809 3.58857 0.11707 3.49333 42 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 43 0.14179 3.38107 2.80245 3.28281 43 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 44 0.14179 3.38107 2.80245 3.28281 44 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 45 3.43404 0.13010 3.48346 2.82967 45 - - 1.38629 1.38629 1.38629 1.38629 0.01860 3.99364 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_nineg_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:13:36 2012 NSEQ 25 EFFN 3.213501 CKSUM 1199603924 STATS LOCAL MSV -8.0844 0.71932 STATS LOCAL VITERBI -7.5542 0.71932 STATS LOCAL FORWARD -4.1984 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34047 1.32612 1.38036 1.50831 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 0.00000 * 1 3.39204 0.13522 3.44322 2.79900 1 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 2 2.92253 3.55151 0.12120 3.45245 2 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 3 0.14669 3.34466 2.77874 3.24298 3 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 4 3.39204 0.13522 3.44322 2.79900 4 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 5 3.05282 2.57235 3.10233 0.18456 5 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 6 3.39204 0.13522 3.44322 2.79900 6 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 7 3.05282 2.57235 3.10233 0.18456 7 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 8 3.39204 0.13522 3.44322 2.79900 8 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 9 2.92253 3.55151 0.12120 3.45245 9 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 10 2.92253 3.55151 0.12120 3.45245 10 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 11 3.39204 0.13522 3.44322 2.79900 11 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 12 0.14669 3.34466 2.77874 3.24298 12 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 13 0.14669 3.34466 2.77874 3.24298 13 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 14 3.39204 0.13522 3.44322 2.79900 14 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 15 2.92253 3.55151 0.12120 3.45245 15 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 16 2.92253 3.55151 0.12120 3.45245 16 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 17 0.14669 3.34466 2.77874 3.24298 17 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 18 3.05282 2.57235 3.10233 0.18456 18 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 19 0.14669 3.34466 2.77874 3.24298 19 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 20 3.05282 2.57235 3.10233 0.18456 20 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 21 3.39204 0.13522 3.44322 2.79900 21 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 22 3.05282 2.57235 3.10233 0.18456 22 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 23 0.14669 3.34466 2.77874 3.24298 23 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 24 2.92253 3.55151 0.12120 3.45245 24 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 25 2.92253 3.55151 0.12120 3.45245 25 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 26 3.39204 0.13522 3.44322 2.79900 26 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 27 3.05282 2.57235 3.10233 0.18456 27 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 28 3.39204 0.13522 3.44322 2.79900 28 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 29 3.05282 2.57235 3.10233 0.18456 29 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 30 3.05282 2.57235 3.10233 0.18456 30 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 31 2.92253 3.55151 0.12120 3.45245 31 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 32 3.39204 0.13522 3.44322 2.79900 32 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 33 0.14669 3.34466 2.77874 3.24298 33 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 34 3.05282 2.57235 3.10233 0.18456 34 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 35 3.39204 0.13522 3.44322 2.79900 35 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 36 2.92253 3.55151 0.12120 3.45245 36 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 37 0.14669 3.34466 2.77874 3.24298 37 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 38 3.05282 2.57235 3.10233 0.18456 38 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 39 2.92253 3.55151 0.12120 3.45245 39 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 40 0.14669 3.34466 2.77874 3.24298 40 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 41 0.14669 3.34466 2.77874 3.24298 41 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 42 2.92253 3.55151 0.12120 3.45245 42 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 43 0.14669 3.34466 2.77874 3.24298 43 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 44 0.14669 3.34466 2.77874 3.24298 44 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99148 3.99148 1.46634 0.26236 1.09861 0.40547 45 3.39204 0.13522 3.44322 2.79900 45 - - 1.38629 1.38629 1.38629 1.38629 0.01900 3.97284 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_nineh_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:13:41 2012 NSEQ 2 EFFN 2.000000 CKSUM 3988372655 STATS LOCAL MSV -7.3866 0.72804 STATS LOCAL VITERBI -8.1091 0.72804 STATS LOCAL FORWARD -3.4400 0.72804 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34404 1.34309 1.43461 1.42727 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23862 2.84929 2.43386 2.70756 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_ninei_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:13:47 2012 NSEQ 2 EFFN 2.000000 CKSUM 3812300370 STATS LOCAL MSV -7.4061 0.72764 STATS LOCAL VITERBI -8.1319 0.72764 STATS LOCAL FORWARD -3.4528 0.72764 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.46216 1.24196 1.32139 1.54796 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_ninej_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:13:53 2012 NSEQ 29 EFFN 3.189575 CKSUM 2074168776 STATS LOCAL MSV -8.0345 0.71933 STATS LOCAL VITERBI -7.6855 0.71933 STATS LOCAL FORWARD -3.9179 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34160 1.26671 1.38128 1.58202 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 0.00000 * 1 3.38283 0.13637 3.43439 2.79225 1 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 2 2.91688 3.54335 0.12214 3.44346 2 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 3 0.14779 3.33669 2.77353 3.23426 3 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 4 3.38283 0.13637 3.43439 2.79225 4 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 5 3.04483 2.56726 3.09465 0.18590 5 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 6 3.38283 0.13637 3.43439 2.79225 6 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 7 3.04483 2.56726 3.09465 0.18590 7 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 8 3.38283 0.13637 3.43439 2.79225 8 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 9 2.91688 3.54335 0.12214 3.44346 9 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 10 2.91688 3.54335 0.12214 3.44346 10 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 11 3.38283 0.13637 3.43439 2.79225 11 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 12 0.14779 3.33669 2.77353 3.23426 12 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 13 0.14779 3.33669 2.77353 3.23426 13 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 14 3.38283 0.13637 3.43439 2.79225 14 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 15 2.91688 3.54335 0.12214 3.44346 15 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 16 2.91688 3.54335 0.12214 3.44346 16 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 17 0.14779 3.33669 2.77353 3.23426 17 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 18 3.04483 2.56726 3.09465 0.18590 18 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 19 0.14779 3.33669 2.77353 3.23426 19 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 20 3.04483 2.56726 3.09465 0.18590 20 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 21 3.38283 0.13637 3.43439 2.79225 21 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 22 3.04483 2.56726 3.09465 0.18590 22 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 23 3.38283 0.13637 3.43439 2.79225 23 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 24 2.91688 3.54335 0.12214 3.44346 24 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 25 2.91688 3.54335 0.12214 3.44346 25 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 26 3.38283 0.13637 3.43439 2.79225 26 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 27 3.04483 2.56726 3.09465 0.18590 27 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 28 3.38283 0.13637 3.43439 2.79225 28 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 29 0.14779 3.33669 2.77353 3.23426 29 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 30 3.04483 2.56726 3.09465 0.18590 30 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 31 2.91688 3.54335 0.12214 3.44346 31 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 32 3.38283 0.13637 3.43439 2.79225 32 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 33 0.14779 3.33669 2.77353 3.23426 33 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 34 3.04483 2.56726 3.09465 0.18590 34 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 35 3.38283 0.13637 3.43439 2.79225 35 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 36 2.91688 3.54335 0.12214 3.44346 36 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 37 0.14779 3.33669 2.77353 3.23426 37 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 38 3.04483 2.56726 3.09465 0.18590 38 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 39 2.91688 3.54335 0.12214 3.44346 39 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 40 0.14779 3.33669 2.77353 3.23426 40 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 41 0.14779 3.33669 2.77353 3.23426 41 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 42 2.91688 3.54335 0.12214 3.44346 42 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 43 0.14779 3.33669 2.77353 3.23426 43 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 44 0.14779 3.33669 2.77353 3.23426 44 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98705 3.98705 1.46634 0.26236 1.09861 0.40547 45 3.38283 0.13637 3.43439 2.79225 45 - - 1.38629 1.38629 1.38629 1.38629 0.01909 3.96832 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_ninek_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:13:58 2012 NSEQ 10 EFFN 3.383789 CKSUM 3321732590 STATS LOCAL MSV -7.5222 0.71932 STATS LOCAL VITERBI -7.6007 0.71932 STATS LOCAL FORWARD -4.1158 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.39575 1.33634 1.39319 1.42186 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 0.00000 * 1 3.10820 2.60760 3.15560 0.17555 1 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 2 2.96099 3.60737 0.11504 3.51408 2 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 3 0.13936 3.39963 2.81449 3.30313 3 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 4 3.45541 0.12758 3.50392 2.84521 4 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 5 3.10820 2.60760 3.15560 0.17555 5 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 6 3.45541 0.12758 3.50392 2.84521 6 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 7 3.10820 2.60760 3.15560 0.17555 7 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 8 3.45541 0.12758 3.50392 2.84521 8 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 9 2.96099 3.60737 0.11504 3.51408 9 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 10 2.96099 3.60737 0.11504 3.51408 10 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 11 3.45541 0.12758 3.50392 2.84521 11 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 12 0.13936 3.39963 2.81449 3.30313 12 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 13 0.13936 3.39963 2.81449 3.30313 13 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 14 3.45541 0.12758 3.50392 2.84521 14 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 15 2.96099 3.60737 0.11504 3.51408 15 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 16 2.96099 3.60737 0.11504 3.51408 16 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 17 0.13936 3.39963 2.81449 3.30313 17 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 18 3.10820 2.60760 3.15560 0.17555 18 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 19 0.13936 3.39963 2.81449 3.30313 19 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 20 3.10820 2.60760 3.15560 0.17555 20 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 21 3.45541 0.12758 3.50392 2.84521 21 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 22 3.10820 2.60760 3.15560 0.17555 22 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 23 3.45541 0.12758 3.50392 2.84521 23 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 24 2.96099 3.60737 0.11504 3.51408 24 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 25 2.96099 3.60737 0.11504 3.51408 25 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 26 3.45541 0.12758 3.50392 2.84521 26 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 27 3.10820 2.60760 3.15560 0.17555 27 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 28 3.45541 0.12758 3.50392 2.84521 28 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 29 3.10820 2.60760 3.15560 0.17555 29 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 30 3.10820 2.60760 3.15560 0.17555 30 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 31 2.96099 3.60737 0.11504 3.51408 31 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 32 3.45541 0.12758 3.50392 2.84521 32 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 33 0.13936 3.39963 2.81449 3.30313 33 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 34 3.10820 2.60760 3.15560 0.17555 34 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 35 3.45541 0.12758 3.50392 2.84521 35 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 36 2.96099 3.60737 0.11504 3.51408 36 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 37 0.13936 3.39963 2.81449 3.30313 37 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 38 3.10820 2.60760 3.15560 0.17555 38 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 39 2.96099 3.60737 0.11504 3.51408 39 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 40 0.13936 3.39963 2.81449 3.30313 40 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 41 0.13936 3.39963 2.81449 3.30313 41 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 42 1.86508 2.96676 0.30783 2.83696 42 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 43 0.13936 3.39963 2.81449 3.30313 43 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 44 0.13936 3.39963 2.81449 3.30313 44 - - 1.38629 1.38629 1.38629 1.38629 0.03648 4.02245 4.02245 1.46634 0.26236 1.09861 0.40547 45 2.76591 0.36141 2.83341 1.70606 45 - - 1.38629 1.38629 1.38629 1.38629 0.01840 4.00438 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_ninel_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:14:04 2012 NSEQ 27 EFFN 3.318970 CKSUM 640933778 STATS LOCAL MSV -7.9871 0.71932 STATS LOCAL VITERBI -7.6291 0.71932 STATS LOCAL FORWARD -4.2511 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40354 1.38599 1.39206 1.36401 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 0.00000 * 1 3.08741 2.59438 3.13561 0.17887 1 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 2 2.94670 3.58655 0.11729 3.49109 2 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 3 0.14205 3.37907 2.80115 3.28063 3 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 4 3.43174 0.13037 3.48126 2.82800 4 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 5 3.08741 2.59438 3.13561 0.17887 5 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 6 3.43174 0.13037 3.48126 2.82800 6 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 7 3.08741 2.59438 3.13561 0.17887 7 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 8 3.43174 0.13037 3.48126 2.82800 8 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 9 2.94670 3.58655 0.11729 3.49109 9 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 10 2.54971 2.86852 0.27680 2.23581 10 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 11 3.43174 0.13037 3.48126 2.82800 11 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 12 0.14205 3.37907 2.80115 3.28063 12 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 13 0.14205 3.37907 2.80115 3.28063 13 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 14 3.08741 2.59438 3.13561 0.17887 14 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 15 2.94670 3.58655 0.11729 3.49109 15 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 16 2.94670 3.58655 0.11729 3.49109 16 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 17 0.14205 3.37907 2.80115 3.28063 17 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 18 3.08741 2.59438 3.13561 0.17887 18 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 19 0.14205 3.37907 2.80115 3.28063 19 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 20 3.08741 2.59438 3.13561 0.17887 20 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 21 3.43174 0.13037 3.48126 2.82800 21 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 22 3.08741 2.59438 3.13561 0.17887 22 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 23 3.43174 0.13037 3.48126 2.82800 23 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 24 2.94670 3.58655 0.11729 3.49109 24 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 25 2.94670 3.58655 0.11729 3.49109 25 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 26 3.43174 0.13037 3.48126 2.82800 26 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 27 3.08741 2.59438 3.13561 0.17887 27 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 28 3.43174 0.13037 3.48126 2.82800 28 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 29 3.08741 2.59438 3.13561 0.17887 29 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 30 3.08741 2.59438 3.13561 0.17887 30 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 31 2.94670 3.58655 0.11729 3.49109 31 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 32 3.43174 0.13037 3.48126 2.82800 32 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 33 0.14205 3.37907 2.80115 3.28063 33 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 34 3.08741 2.59438 3.13561 0.17887 34 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 35 3.43174 0.13037 3.48126 2.82800 35 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 36 2.94670 3.58655 0.11729 3.49109 36 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 37 0.14205 3.37907 2.80115 3.28063 37 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 38 3.08741 2.59438 3.13561 0.17887 38 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 39 2.94670 3.58655 0.11729 3.49109 39 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 40 0.14205 3.37907 2.80115 3.28063 40 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 41 0.14205 3.37907 2.80115 3.28063 41 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 42 2.94670 3.58655 0.11729 3.49109 42 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 43 0.14205 3.37907 2.80115 3.28063 43 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 44 0.14205 3.37907 2.80115 3.28063 44 - - 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.09861 0.40547 45 3.43174 0.13037 3.48126 2.82800 45 - - 1.38629 1.38629 1.38629 1.38629 0.01863 3.99249 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_ninem_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:14:09 2012 NSEQ 8 EFFN 3.207031 CKSUM 388308972 STATS LOCAL MSV -8.1606 0.71932 STATS LOCAL VITERBI -7.7611 0.71932 STATS LOCAL FORWARD -4.0593 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40764 1.26351 1.38278 1.50624 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 0.00000 * 1 3.38956 0.13553 3.44084 2.79718 1 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 2 2.92101 3.54931 0.12145 3.45003 2 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 3 0.14698 3.34251 2.77733 3.24063 3 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 4 3.38956 0.13553 3.44084 2.79718 4 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 5 3.05066 2.57097 3.10026 0.18492 5 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 6 3.38956 0.13553 3.44084 2.79718 6 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 7 3.05066 2.57097 3.10026 0.18492 7 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 8 3.38956 0.13553 3.44084 2.79718 8 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 9 2.92101 3.54931 0.12145 3.45003 9 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 10 2.92101 3.54931 0.12145 3.45003 10 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 11 3.38956 0.13553 3.44084 2.79718 11 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 12 0.14698 3.34251 2.77733 3.24063 12 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 13 0.14698 3.34251 2.77733 3.24063 13 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 14 3.05066 2.57097 3.10026 0.18492 14 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 15 2.92101 3.54931 0.12145 3.45003 15 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 16 2.92101 3.54931 0.12145 3.45003 16 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 17 0.14698 3.34251 2.77733 3.24063 17 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 18 3.05066 2.57097 3.10026 0.18492 18 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 19 0.14698 3.34251 2.77733 3.24063 19 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 20 3.05066 2.57097 3.10026 0.18492 20 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 21 3.38956 0.13553 3.44084 2.79718 21 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 22 3.05066 2.57097 3.10026 0.18492 22 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 23 3.38956 0.13553 3.44084 2.79718 23 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 24 2.92101 3.54931 0.12145 3.45003 24 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 25 2.92101 3.54931 0.12145 3.45003 25 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 26 3.38956 0.13553 3.44084 2.79718 26 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 27 3.05066 2.57097 3.10026 0.18492 27 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 28 3.38956 0.13553 3.44084 2.79718 28 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 29 3.05066 2.57097 3.10026 0.18492 29 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 30 3.38956 0.13553 3.44084 2.79718 30 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 31 2.92101 3.54931 0.12145 3.45003 31 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 32 3.38956 0.13553 3.44084 2.79718 32 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 33 0.14698 3.34251 2.77733 3.24063 33 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 34 3.05066 2.57097 3.10026 0.18492 34 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 35 3.38956 0.13553 3.44084 2.79718 35 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 36 2.92101 3.54931 0.12145 3.45003 36 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 37 0.14698 3.34251 2.77733 3.24063 37 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 38 3.05066 2.57097 3.10026 0.18492 38 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 39 2.92101 3.54931 0.12145 3.45003 39 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 40 0.14698 3.34251 2.77733 3.24063 40 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 41 0.14698 3.34251 2.77733 3.24063 41 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 42 2.92101 3.54931 0.12145 3.45003 42 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 43 0.14698 3.34251 2.77733 3.24063 43 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 44 0.14698 3.34251 2.77733 3.24063 44 - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 45 3.38956 0.13553 3.44084 2.79718 45 - - 1.38629 1.38629 1.38629 1.38629 0.01902 3.97162 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_ninen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:14:13 2012 NSEQ 2 EFFN 2.000000 CKSUM 194503138 STATS LOCAL MSV -7.4789 0.72807 STATS LOCAL VITERBI -8.2229 0.72807 STATS LOCAL FORWARD -3.6133 0.72807 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.39870 1.39791 1.37392 1.37493 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_nineo_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:14:18 2012 NSEQ 3 EFFN 3.000000 CKSUM 3592650123 STATS LOCAL MSV -7.9344 0.72076 STATS LOCAL VITERBI -7.6721 0.72076 STATS LOCAL FORWARD -3.7518 0.72076 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.26182 1.31519 1.42658 1.56874 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 1.21118 1.33798 1.26855 1.84174 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.15719 3.27118 2.73043 3.16274 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 0.15719 3.27118 2.73043 3.16274 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.30705 0.14631 3.36166 2.73626 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 3.30705 0.14631 3.36166 2.73626 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.15719 3.27118 2.73043 3.16274 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.15719 3.27118 2.73043 3.16274 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.97980 2.52563 3.03204 0.19727 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.30705 0.14631 3.36166 2.73626 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.97980 2.52563 3.03204 0.19727 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 3.30705 0.14631 3.36166 2.73626 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.86982 3.47591 0.13017 3.36931 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.97980 2.52563 3.03204 0.19727 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 0.15719 3.27118 2.73043 3.16274 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 0.15719 3.27118 2.73043 3.16274 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.15719 3.27118 2.73043 3.16274 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.86982 3.47591 0.13017 3.36931 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 0.15719 3.27118 2.73043 3.16274 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_ninep_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:14:24 2012 NSEQ 12 EFFN 3.190430 CKSUM 2049545075 STATS LOCAL MSV -8.0345 0.71932 STATS LOCAL VITERBI -7.6858 0.71932 STATS LOCAL FORWARD -3.9181 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34160 1.26670 1.38129 1.58203 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 0.00000 * 1 3.38316 0.13633 3.43471 2.79249 1 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 2 2.91709 3.54364 0.12210 3.44379 2 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 3 0.14775 3.33697 2.77371 3.23457 3 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 4 3.38316 0.13633 3.43471 2.79249 4 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 5 3.04512 2.56744 3.09493 0.18585 5 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 6 3.38316 0.13633 3.43471 2.79249 6 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 7 3.04512 2.56744 3.09493 0.18585 7 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 8 3.38316 0.13633 3.43471 2.79249 8 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 9 2.91709 3.54364 0.12210 3.44379 9 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 10 2.91709 3.54364 0.12210 3.44379 10 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 11 3.38316 0.13633 3.43471 2.79249 11 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 12 0.14775 3.33697 2.77371 3.23457 12 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 13 0.14775 3.33697 2.77371 3.23457 13 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 14 3.38316 0.13633 3.43471 2.79249 14 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 15 2.91709 3.54364 0.12210 3.44379 15 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 16 2.91709 3.54364 0.12210 3.44379 16 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 17 0.14775 3.33697 2.77371 3.23457 17 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 18 3.04512 2.56744 3.09493 0.18585 18 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 19 0.14775 3.33697 2.77371 3.23457 19 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 20 3.04512 2.56744 3.09493 0.18585 20 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 21 3.38316 0.13633 3.43471 2.79249 21 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 22 3.04512 2.56744 3.09493 0.18585 22 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 23 3.38316 0.13633 3.43471 2.79249 23 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 24 2.91709 3.54364 0.12210 3.44379 24 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 25 2.91709 3.54364 0.12210 3.44379 25 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 26 3.38316 0.13633 3.43471 2.79249 26 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 27 3.04512 2.56744 3.09493 0.18585 27 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 28 3.38316 0.13633 3.43471 2.79249 28 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 29 0.14775 3.33697 2.77371 3.23457 29 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 30 3.04512 2.56744 3.09493 0.18585 30 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 31 2.91709 3.54364 0.12210 3.44379 31 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 32 3.38316 0.13633 3.43471 2.79249 32 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 33 0.14775 3.33697 2.77371 3.23457 33 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 34 3.04512 2.56744 3.09493 0.18585 34 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 35 3.38316 0.13633 3.43471 2.79249 35 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 36 2.91709 3.54364 0.12210 3.44379 36 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 37 0.14775 3.33697 2.77371 3.23457 37 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 38 3.04512 2.56744 3.09493 0.18585 38 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 39 2.91709 3.54364 0.12210 3.44379 39 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 40 0.14775 3.33697 2.77371 3.23457 40 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 41 0.14775 3.33697 2.77371 3.23457 41 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 42 2.91709 3.54364 0.12210 3.44379 42 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 43 0.14775 3.33697 2.77371 3.23457 43 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 44 0.14775 3.33697 2.77371 3.23457 44 - - 1.38629 1.38629 1.38629 1.38629 0.03781 3.98721 3.98721 1.46634 0.26236 1.09861 0.40547 45 3.38316 0.13633 3.43471 2.79249 45 - - 1.38629 1.38629 1.38629 1.38629 0.01908 3.96848 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_nineq_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:14:31 2012 NSEQ 15 EFFN 3.336182 CKSUM 3271186430 STATS LOCAL MSV -8.0468 0.71932 STATS LOCAL VITERBI -7.6643 0.71932 STATS LOCAL FORWARD -4.0052 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33355 1.35898 1.37681 1.48212 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 0.00000 * 1 0.14133 3.38458 2.80473 3.28665 1 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 2 2.95053 3.59213 0.11668 3.49725 2 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 3 0.14133 3.38458 2.80473 3.28665 3 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 4 3.43808 0.12962 3.48733 2.83261 4 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 5 3.09296 2.59791 3.14095 0.17798 5 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 6 3.43808 0.12962 3.48733 2.83261 6 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 7 3.09296 2.59791 3.14095 0.17798 7 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 8 3.43808 0.12962 3.48733 2.83261 8 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 9 2.95053 3.59213 0.11668 3.49725 9 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 10 2.95053 3.59213 0.11668 3.49725 10 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 11 3.43808 0.12962 3.48733 2.83261 11 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 12 0.14133 3.38458 2.80473 3.28665 12 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 13 0.14133 3.38458 2.80473 3.28665 13 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 14 3.43808 0.12962 3.48733 2.83261 14 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 15 2.95053 3.59213 0.11668 3.49725 15 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 16 2.95053 3.59213 0.11668 3.49725 16 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 17 0.14133 3.38458 2.80473 3.28665 17 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 18 3.09296 2.59791 3.14095 0.17798 18 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 19 0.14133 3.38458 2.80473 3.28665 19 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 20 3.09296 2.59791 3.14095 0.17798 20 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 21 3.43808 0.12962 3.48733 2.83261 21 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 22 3.09296 2.59791 3.14095 0.17798 22 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 23 3.09296 2.59791 3.14095 0.17798 23 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 24 2.95053 3.59213 0.11668 3.49725 24 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 25 2.95053 3.59213 0.11668 3.49725 25 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 26 3.43808 0.12962 3.48733 2.83261 26 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 27 3.09296 2.59791 3.14095 0.17798 27 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 28 3.43808 0.12962 3.48733 2.83261 28 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 29 3.09296 2.59791 3.14095 0.17798 29 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 30 2.43538 0.73697 2.50788 1.04289 30 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 31 2.95053 3.59213 0.11668 3.49725 31 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 32 3.43808 0.12962 3.48733 2.83261 32 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 33 0.14133 3.38458 2.80473 3.28665 33 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 34 3.09296 2.59791 3.14095 0.17798 34 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 35 3.43808 0.12962 3.48733 2.83261 35 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 36 2.95053 3.59213 0.11668 3.49725 36 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 37 0.14133 3.38458 2.80473 3.28665 37 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 38 3.09296 2.59791 3.14095 0.17798 38 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 39 2.95053 3.59213 0.11668 3.49725 39 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 40 0.14133 3.38458 2.80473 3.28665 40 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 41 0.14133 3.38458 2.80473 3.28665 41 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 42 2.95053 3.59213 0.11668 3.49725 42 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 43 0.14133 3.38458 2.80473 3.28665 43 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 44 0.14133 3.38458 2.80473 3.28665 44 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01389 4.01389 1.46634 0.26236 1.09861 0.40547 45 3.43808 0.12962 3.48733 2.83261 45 - - 1.38629 1.38629 1.38629 1.38629 0.01857 3.99566 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_niner_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:14:40 2012 NSEQ 1631 EFFN 3.673956 CKSUM 3384115276 STATS LOCAL MSV -7.6208 0.71933 STATS LOCAL VITERBI -7.6410 0.71933 STATS LOCAL FORWARD -3.9735 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.38082 1.26665 1.37302 1.54405 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 0.00000 * 1 2.37824 0.62590 2.43334 1.25609 1 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 2 2.77685 3.58728 0.12807 3.49652 2 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 3 0.12864 3.48642 2.87047 3.39832 3 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 4 3.55496 0.11657 3.59909 2.91689 4 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 5 3.19708 2.66398 3.24103 0.16214 5 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 6 3.55496 0.11657 3.59909 2.91689 6 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 7 3.10118 2.42316 3.14895 0.19423 7 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 8 3.45468 0.13230 3.42439 2.81744 8 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 9 3.02021 3.69433 0.10614 3.61032 9 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 10 2.92544 3.65523 0.11393 3.56912 10 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 11 3.45801 0.12993 3.39292 2.86926 11 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 12 0.13702 3.45284 2.78437 3.36310 12 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 13 0.12864 3.48642 2.87047 3.39832 13 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 14 3.50366 0.12675 3.54954 2.80967 14 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 15 3.02021 3.69433 0.10614 3.61032 15 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 16 3.02021 3.69433 0.10614 3.61032 16 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 17 0.12864 3.48642 2.87047 3.39832 17 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 18 3.19708 2.66398 3.24103 0.16214 18 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 19 0.12864 3.48642 2.87047 3.39832 19 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 20 3.19708 2.66398 3.24103 0.16214 20 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 21 3.55496 0.11657 3.59909 2.91689 21 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 22 3.19708 2.66398 3.24103 0.16214 22 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 23 3.23252 0.16301 3.36338 2.57256 23 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 24 2.98023 3.47991 0.11807 3.51415 24 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 25 3.02021 3.69433 0.10614 3.61032 25 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 26 3.50767 0.12594 3.55341 2.81776 26 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 27 3.19708 2.66398 3.24103 0.16214 27 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 28 3.55496 0.11657 3.59909 2.91689 28 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 29 1.49008 2.22189 2.28320 0.57220 29 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 30 2.48276 1.06693 2.55323 0.70402 30 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 31 2.92531 3.65518 0.11394 3.56906 31 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 32 3.55496 0.11657 3.59909 2.91689 32 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 33 0.12864 3.48642 2.87047 3.39832 33 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 34 3.19708 2.66398 3.24103 0.16214 34 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 35 3.55496 0.11657 3.59909 2.91689 35 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 36 3.02021 3.69433 0.10614 3.61032 36 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 37 0.12864 3.48642 2.87047 3.39832 37 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 38 3.19708 2.66398 3.24103 0.16214 38 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 39 3.02021 3.69433 0.10614 3.61032 39 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 40 0.12864 3.48642 2.87047 3.39832 40 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 41 0.12864 3.48642 2.87047 3.39832 41 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 42 3.02021 3.69433 0.10614 3.61032 42 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 43 0.12864 3.48642 2.87047 3.39832 43 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 44 0.12864 3.48642 2.87047 3.39832 44 - - 1.38629 1.38629 1.38629 1.38629 0.03464 4.07312 4.07312 1.46634 0.26236 1.09861 0.40547 45 3.55496 0.11657 3.59909 2.91689 45 - - 1.38629 1.38629 1.38629 1.38629 0.01747 4.05595 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_onea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:54:43 2012 NSEQ 8 EFFN 3.597656 CKSUM 3069228844 STATS LOCAL MSV -7.7371 0.71932 STATS LOCAL VITERBI -7.6193 0.71932 STATS LOCAL FORWARD -4.1725 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.32040 1.29960 1.63507 1.32655 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 0.00000 * 1 3.17435 2.64957 3.21919 0.16545 1 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 2 2.16721 0.30824 2.78013 2.42212 2 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 3 0.13127 3.46439 2.85631 3.37414 3 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 4 3.52976 0.11925 3.57502 2.89885 4 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 5 3.17435 2.64957 3.21919 0.16545 5 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 6 3.17435 2.64957 3.21919 0.16545 6 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 7 3.17435 2.64957 3.21919 0.16545 7 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 8 3.52976 0.11925 3.57502 2.89885 8 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 9 0.13127 3.46439 2.85631 3.37414 9 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 10 0.13127 3.46439 2.85631 3.37414 10 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 11 3.52976 0.11925 3.57502 2.89885 11 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 12 0.13127 3.46439 2.85631 3.37414 12 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 13 0.13127 3.46439 2.85631 3.37414 13 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 14 2.45394 0.94651 2.52541 0.80760 14 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 15 3.00534 3.67241 0.10830 3.58603 15 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 16 3.00534 3.67241 0.10830 3.58603 16 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 17 0.13127 3.46439 2.85631 3.37414 17 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 18 3.17435 2.64957 3.21919 0.16545 18 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 19 3.52976 0.11925 3.57502 2.89885 19 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 20 3.17435 2.64957 3.21919 0.16545 20 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 21 3.52976 0.11925 3.57502 2.89885 21 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 22 3.17435 2.64957 3.21919 0.16545 22 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 23 3.17435 2.64957 3.21919 0.16545 23 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 24 3.00534 3.67241 0.10830 3.58603 24 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 25 3.00534 3.67241 0.10830 3.58603 25 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 26 3.52976 0.11925 3.57502 2.89885 26 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 27 3.17435 2.64957 3.21919 0.16545 27 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 28 3.52976 0.11925 3.57502 2.89885 28 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 29 3.17435 2.64957 3.21919 0.16545 29 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 30 3.52976 0.11925 3.57502 2.89885 30 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 31 3.00534 3.67241 0.10830 3.58603 31 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 32 3.52976 0.11925 3.57502 2.89885 32 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 33 0.13127 3.46439 2.85631 3.37414 33 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 34 3.17435 2.64957 3.21919 0.16545 34 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 35 3.52976 0.11925 3.57502 2.89885 35 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 36 3.00534 3.67241 0.10830 3.58603 36 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 37 0.13127 3.46439 2.85631 3.37414 37 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 38 3.17435 2.64957 3.21919 0.16545 38 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 39 3.00534 3.67241 0.10830 3.58603 39 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 40 0.13127 3.46439 2.85631 3.37414 40 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 41 0.13127 3.46439 2.85631 3.37414 41 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 42 1.68040 2.89345 0.36377 2.76041 42 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 43 0.13127 3.46439 2.85631 3.37414 43 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 44 0.13127 3.46439 2.85631 3.37414 44 - - 1.38629 1.38629 1.38629 1.38629 0.03511 4.06004 4.06004 1.46634 0.26236 1.09861 0.40547 45 3.52976 0.11925 3.57502 2.89885 45 - - 1.38629 1.38629 1.38629 1.38629 0.01771 4.04264 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_oneb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:54:52 2012 NSEQ 3 EFFN 3.000000 CKSUM 2894283180 STATS LOCAL MSV -8.1544 0.72049 STATS LOCAL VITERBI -7.7198 0.72049 STATS LOCAL FORWARD -4.0031 0.72049 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40519 1.31757 1.52716 1.31028 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 3.30705 0.14631 3.36166 2.73626 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 0.15719 3.27118 2.73043 3.16274 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.15719 3.27118 2.73043 3.16274 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.97980 2.52563 3.03204 0.19727 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.97980 2.52563 3.03204 0.19727 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.30705 0.14631 3.36166 2.73626 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 3.30705 0.14631 3.36166 2.73626 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.15719 3.27118 2.73043 3.16274 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.30705 0.14631 3.36166 2.73626 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.97980 2.52563 3.03204 0.19727 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.30705 0.14631 3.36166 2.73626 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.97980 2.52563 3.03204 0.19727 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.97980 2.52563 3.03204 0.19727 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.86982 3.47591 0.13017 3.36931 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.97980 2.52563 3.03204 0.19727 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.97980 2.52563 3.03204 0.19727 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 0.15719 3.27118 2.73043 3.16274 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.15719 3.27118 2.73043 3.16274 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.86982 3.47591 0.13017 3.36931 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 0.15719 3.27118 2.73043 3.16274 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_onec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:55:02 2012 NSEQ 44 EFFN 3.649658 CKSUM 2327022651 STATS LOCAL MSV -7.5756 0.71932 STATS LOCAL VITERBI -7.5779 0.71932 STATS LOCAL FORWARD -3.9495 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.21489 1.46036 1.53943 1.36023 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 0.00000 * 1 0.29652 2.21705 2.54287 2.67327 1 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 2 0.12947 3.47946 2.86600 3.39068 2 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 3 0.12947 3.47946 2.86600 3.39068 3 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 4 3.54700 0.11741 3.59149 2.91120 4 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 5 3.18989 2.65942 3.23412 0.16318 5 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 6 3.18989 2.65942 3.23412 0.16318 6 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 7 3.18989 2.65942 3.23412 0.16318 7 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 8 2.94187 0.29151 3.00554 1.89321 8 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 9 0.12947 3.47946 2.86600 3.39068 9 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 10 0.12947 3.47946 2.86600 3.39068 10 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 11 3.54700 0.11741 3.59149 2.91120 11 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 12 0.12947 3.47946 2.86600 3.39068 12 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 13 0.12947 3.47946 2.86600 3.39068 13 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 14 3.02953 0.25564 3.09094 2.02663 14 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 15 3.01552 3.68741 0.10682 3.60266 15 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 16 3.01552 3.68741 0.10682 3.60266 16 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 17 0.12947 3.47946 2.86600 3.39068 17 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 18 3.18989 2.65942 3.23412 0.16318 18 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 19 3.54700 0.11741 3.59149 2.91120 19 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 20 3.18989 2.65942 3.23412 0.16318 20 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 21 3.54700 0.11741 3.59149 2.91120 21 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 22 3.18989 2.65942 3.23412 0.16318 22 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 23 3.18989 2.65942 3.23412 0.16318 23 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 24 3.01552 3.68741 0.10682 3.60266 24 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 25 3.01552 3.68741 0.10682 3.60266 25 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 26 2.97399 2.15606 3.02698 0.24251 26 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 27 3.18989 2.65942 3.23412 0.16318 27 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 28 3.54700 0.11741 3.59149 2.91120 28 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 29 2.98242 2.17364 3.03507 0.23890 29 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 30 2.52061 2.13933 0.31228 2.65809 30 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 31 3.01552 3.68741 0.10682 3.60266 31 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 32 3.54700 0.11741 3.59149 2.91120 32 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 33 0.12947 3.47946 2.86600 3.39068 33 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 34 3.18989 2.65942 3.23412 0.16318 34 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 35 3.54700 0.11741 3.59149 2.91120 35 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 36 3.01552 3.68741 0.10682 3.60266 36 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 37 0.12947 3.47946 2.86600 3.39068 37 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 38 3.18989 2.65942 3.23412 0.16318 38 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 39 3.01552 3.68741 0.10682 3.60266 39 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 40 0.12947 3.47946 2.86600 3.39068 40 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 41 0.12947 3.47946 2.86600 3.39068 41 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 42 3.01552 3.68741 0.10682 3.60266 42 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 43 0.12947 3.47946 2.86600 3.39068 43 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 44 0.12947 3.47946 2.86600 3.39068 44 - - 1.38629 1.38629 1.38629 1.38629 0.03479 4.06897 4.06897 1.46634 0.26236 1.09861 0.40547 45 3.54700 0.11741 3.59149 2.91120 45 - - 1.38629 1.38629 1.38629 1.38629 0.01755 4.05173 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_sevena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:57:27 2012 NSEQ 33 EFFN 3.307251 CKSUM 3974060790 STATS LOCAL MSV -8.1230 0.71931 STATS LOCAL VITERBI -7.6737 0.71931 STATS LOCAL FORWARD -4.1389 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40155 1.34561 1.31245 1.49502 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 0.00000 * 1 2.94407 3.58273 0.11771 3.48688 1 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 2 2.94407 3.58273 0.11771 3.48688 2 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 3 0.14255 3.37531 2.79871 3.27650 3 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 4 3.42740 0.13089 3.47710 2.82484 4 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 5 3.08361 2.59196 3.13196 0.17948 5 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 6 3.42740 0.13089 3.47710 2.82484 6 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 7 3.42740 0.13089 3.47710 2.82484 7 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 8 3.42740 0.13089 3.47710 2.82484 8 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 9 2.94407 3.58273 0.11771 3.48688 9 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 10 0.14255 3.37531 2.79871 3.27650 10 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 11 3.42740 0.13089 3.47710 2.82484 11 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 12 0.14255 3.37531 2.79871 3.27650 12 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 13 0.14255 3.37531 2.79871 3.27650 13 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 14 3.08361 2.59196 3.13196 0.17948 14 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 15 2.94407 3.58273 0.11771 3.48688 15 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 16 2.94407 3.58273 0.11771 3.48688 16 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 17 0.14255 3.37531 2.79871 3.27650 17 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 18 3.08361 2.59196 3.13196 0.17948 18 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 19 0.14255 3.37531 2.79871 3.27650 19 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 20 3.08361 2.59196 3.13196 0.17948 20 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 21 3.42740 0.13089 3.47710 2.82484 21 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 22 3.08361 2.59196 3.13196 0.17948 22 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 23 3.08361 2.59196 3.13196 0.17948 23 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 24 2.94407 3.58273 0.11771 3.48688 24 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 25 2.94407 3.58273 0.11771 3.48688 25 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 26 3.42740 0.13089 3.47710 2.82484 26 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 27 3.08361 2.59196 3.13196 0.17948 27 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 28 3.42740 0.13089 3.47710 2.82484 28 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 29 3.08361 2.59196 3.13196 0.17948 29 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 30 2.65063 0.43216 2.72028 1.53976 30 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 31 2.67056 3.44980 0.14636 3.34717 31 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 32 3.42740 0.13089 3.47710 2.82484 32 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 33 0.14255 3.37531 2.79871 3.27650 33 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 34 3.08361 2.59196 3.13196 0.17948 34 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 35 3.42740 0.13089 3.47710 2.82484 35 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 36 2.94407 3.58273 0.11771 3.48688 36 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 37 0.14255 3.37531 2.79871 3.27650 37 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 38 3.08361 2.59196 3.13196 0.17948 38 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 39 2.94407 3.58273 0.11771 3.48688 39 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 40 0.14255 3.37531 2.79871 3.27650 40 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 41 0.14255 3.37531 2.79871 3.27650 41 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 42 2.94407 3.58273 0.11771 3.48688 42 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 43 0.14255 3.37531 2.79871 3.27650 43 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 44 2.94407 3.58273 0.11771 3.48688 44 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00865 4.00865 1.46634 0.26236 1.09861 0.40547 45 3.42740 0.13089 3.47710 2.82484 45 - - 1.38629 1.38629 1.38629 1.38629 0.01867 3.99033 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_sevenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:57:34 2012 NSEQ 2 EFFN 2.000000 CKSUM 345249460 STATS LOCAL MSV -7.4451 0.72877 STATS LOCAL VITERBI -8.2827 0.72877 STATS LOCAL FORWARD -3.2802 0.72877 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27023 1.23254 1.61372 1.47606 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.92825 2.28391 0.95698 2.13014 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_sevenc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:57:45 2012 NSEQ 2 EFFN 2.000000 CKSUM 984252909 STATS LOCAL MSV -7.6013 0.72797 STATS LOCAL VITERBI -8.1244 0.72797 STATS LOCAL FORWARD -3.5282 0.72797 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34254 1.39917 1.37271 1.43299 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_sevend_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:57:51 2012 NSEQ 4 EFFN 3.183594 CKSUM 890420045 STATS LOCAL MSV -8.1260 0.71933 STATS LOCAL VITERBI -7.7591 0.71933 STATS LOCAL FORWARD -3.7309 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40872 1.20773 1.38372 1.57976 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 0.00000 * 1 3.38051 0.13666 3.43217 2.79055 1 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 2 2.91546 3.54130 0.12237 3.44120 2 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 3 0.14807 3.33468 2.77222 3.23207 3 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 4 3.38051 0.13666 3.43217 2.79055 4 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 5 3.04283 2.56598 3.09273 0.18624 5 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 6 3.38051 0.13666 3.43217 2.79055 6 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 7 3.04283 2.56598 3.09273 0.18624 7 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 8 3.38051 0.13666 3.43217 2.79055 8 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 9 2.91546 3.54130 0.12237 3.44120 9 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 10 2.91546 3.54130 0.12237 3.44120 10 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 11 3.38051 0.13666 3.43217 2.79055 11 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 12 0.14807 3.33468 2.77222 3.23207 12 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 13 0.14807 3.33468 2.77222 3.23207 13 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 14 3.38051 0.13666 3.43217 2.79055 14 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 15 2.91546 3.54130 0.12237 3.44120 15 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 16 2.91546 3.54130 0.12237 3.44120 16 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 17 0.14807 3.33468 2.77222 3.23207 17 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 18 3.04283 2.56598 3.09273 0.18624 18 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 19 0.14807 3.33468 2.77222 3.23207 19 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 20 3.04283 2.56598 3.09273 0.18624 20 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 21 3.38051 0.13666 3.43217 2.79055 21 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 22 3.04283 2.56598 3.09273 0.18624 22 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 23 3.38051 0.13666 3.43217 2.79055 23 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 24 2.91546 3.54130 0.12237 3.44120 24 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 25 3.38051 0.13666 3.43217 2.79055 25 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 26 2.91546 3.54130 0.12237 3.44120 26 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 27 3.04283 2.56598 3.09273 0.18624 27 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 28 3.38051 0.13666 3.43217 2.79055 28 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 29 3.04283 2.56598 3.09273 0.18624 29 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 30 3.38051 0.13666 3.43217 2.79055 30 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 31 2.91546 3.54130 0.12237 3.44120 31 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 32 3.38051 0.13666 3.43217 2.79055 32 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 33 0.14807 3.33468 2.77222 3.23207 33 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 34 3.04283 2.56598 3.09273 0.18624 34 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 35 3.38051 0.13666 3.43217 2.79055 35 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 36 2.91546 3.54130 0.12237 3.44120 36 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 37 0.14807 3.33468 2.77222 3.23207 37 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 38 3.04283 2.56598 3.09273 0.18624 38 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 39 2.91546 3.54130 0.12237 3.44120 39 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 40 0.14807 3.33468 2.77222 3.23207 40 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 41 0.14807 3.33468 2.77222 3.23207 41 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 42 2.91546 3.54130 0.12237 3.44120 42 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 43 0.14807 3.33468 2.77222 3.23207 43 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 44 0.14807 3.33468 2.77222 3.23207 44 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 45 3.38051 0.13666 3.43217 2.79055 45 - - 1.38629 1.38629 1.38629 1.38629 0.01911 3.96719 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_sevene_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:57:57 2012 NSEQ 2 EFFN 2.000000 CKSUM 2718696898 STATS LOCAL MSV -7.4885 0.72793 STATS LOCAL VITERBI -8.0276 0.72793 STATS LOCAL FORWARD -3.5798 0.72793 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.29079 1.34425 1.43332 1.48857 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_sevenf_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:58:01 2012 NSEQ 2 EFFN 2.000000 CKSUM 1738718247 STATS LOCAL MSV -7.5475 0.72825 STATS LOCAL VITERBI -8.3216 0.72825 STATS LOCAL FORWARD -3.4732 0.72825 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.28986 1.39643 1.49646 1.37323 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.23862 2.84929 2.43386 2.70756 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.23862 2.84929 2.43386 2.70756 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.57915 2.25909 2.64442 0.28946 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_seveng_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:58:06 2012 NSEQ 8 EFFN 3.160156 CKSUM 1659179232 STATS LOCAL MSV -7.9878 0.71933 STATS LOCAL VITERBI -7.5924 0.71933 STATS LOCAL FORWARD -3.9345 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40981 1.15513 1.38466 1.65870 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 0.00000 * 1 3.37140 0.13782 3.42342 2.78385 1 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 2 2.90985 3.53322 0.12331 3.43230 2 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 3 0.14916 3.32679 2.76705 3.22344 3 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 4 3.37140 0.13782 3.42342 2.78385 4 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 5 3.03495 2.56095 3.08514 0.18757 5 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 6 3.37140 0.13782 3.42342 2.78385 6 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 7 3.03495 2.56095 3.08514 0.18757 7 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 8 3.37140 0.13782 3.42342 2.78385 8 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 9 2.90985 3.53322 0.12331 3.43230 9 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 10 2.90985 3.53322 0.12331 3.43230 10 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 11 3.37140 0.13782 3.42342 2.78385 11 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 12 0.14916 3.32679 2.76705 3.22344 12 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 13 0.14916 3.32679 2.76705 3.22344 13 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 14 3.37140 0.13782 3.42342 2.78385 14 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 15 2.90985 3.53322 0.12331 3.43230 15 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 16 2.90985 3.53322 0.12331 3.43230 16 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 17 0.14916 3.32679 2.76705 3.22344 17 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 18 3.03495 2.56095 3.08514 0.18757 18 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 19 0.14916 3.32679 2.76705 3.22344 19 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 20 3.03495 2.56095 3.08514 0.18757 20 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 21 3.37140 0.13782 3.42342 2.78385 21 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 22 3.03495 2.56095 3.08514 0.18757 22 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 23 3.03495 2.56095 3.08514 0.18757 23 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 24 2.90985 3.53322 0.12331 3.43230 24 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 25 2.90985 3.53322 0.12331 3.43230 25 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 26 3.37140 0.13782 3.42342 2.78385 26 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 27 3.03495 2.56095 3.08514 0.18757 27 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 28 3.37140 0.13782 3.42342 2.78385 28 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 29 3.37140 0.13782 3.42342 2.78385 29 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 30 3.37140 0.13782 3.42342 2.78385 30 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 31 2.90985 3.53322 0.12331 3.43230 31 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 32 3.37140 0.13782 3.42342 2.78385 32 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 33 3.37140 0.13782 3.42342 2.78385 33 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 34 0.14916 3.32679 2.76705 3.22344 34 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 35 3.37140 0.13782 3.42342 2.78385 35 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 36 2.90985 3.53322 0.12331 3.43230 36 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 37 0.14916 3.32679 2.76705 3.22344 37 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 38 3.03495 2.56095 3.08514 0.18757 38 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 39 2.90985 3.53322 0.12331 3.43230 39 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 40 0.14916 3.32679 2.76705 3.22344 40 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 41 0.14916 3.32679 2.76705 3.22344 41 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 42 2.90985 3.53322 0.12331 3.43230 42 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 43 0.14916 3.32679 2.76705 3.22344 43 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 44 0.14916 3.32679 2.76705 3.22344 44 - - 1.38629 1.38629 1.38629 1.38629 0.03803 3.98158 3.98158 1.46634 0.26236 1.09861 0.40547 45 3.37140 0.13782 3.42342 2.78385 45 - - 1.38629 1.38629 1.38629 1.38629 0.01919 3.96275 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_sevenh_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:58:12 2012 NSEQ 3 EFFN 3.000000 CKSUM 3370148041 STATS LOCAL MSV -8.0586 0.72009 STATS LOCAL VITERBI -7.6977 0.72009 STATS LOCAL FORWARD -3.8459 0.72009 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34211 1.26931 1.38024 1.57910 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 3.30705 0.14631 3.36166 2.73626 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.15719 3.27118 2.73043 3.16274 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.30705 0.14631 3.36166 2.73626 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 3.30705 0.14631 3.36166 2.73626 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.15719 3.27118 2.73043 3.16274 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.15719 3.27118 2.73043 3.16274 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.97980 2.52563 3.03204 0.19727 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.30705 0.14631 3.36166 2.73626 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.97980 2.52563 3.03204 0.19727 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 3.30705 0.14631 3.36166 2.73626 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.86982 3.47591 0.13017 3.36931 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.97980 2.52563 3.03204 0.19727 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.97980 2.52563 3.03204 0.19727 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 0.15719 3.27118 2.73043 3.16274 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.15719 3.27118 2.73043 3.16274 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.86982 3.47591 0.13017 3.36931 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 0.15719 3.27118 2.73043 3.16274 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_seveni_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:58:18 2012 NSEQ 3 EFFN 3.000000 CKSUM 2759242053 STATS LOCAL MSV -7.9338 0.72035 STATS LOCAL VITERBI -7.6316 0.72035 STATS LOCAL FORWARD -3.8921 0.72035 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.28091 1.32591 1.52215 1.43375 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.97980 2.52563 3.03204 0.19727 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.15719 3.27118 2.73043 3.16274 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 0.15719 3.27118 2.73043 3.16274 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.30705 0.14631 3.36166 2.73626 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 3.30705 0.14631 3.36166 2.73626 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.15719 3.27118 2.73043 3.16274 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.15719 3.27118 2.73043 3.16274 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.97980 2.52563 3.03204 0.19727 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.30705 0.14631 3.36166 2.73626 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.97980 2.52563 3.03204 0.19727 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 3.30705 0.14631 3.36166 2.73626 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.86982 3.47591 0.13017 3.36931 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.97980 2.52563 3.03204 0.19727 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.97980 2.52563 3.03204 0.19727 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.15719 3.27118 2.73043 3.16274 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 0.15719 3.27118 2.73043 3.16274 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.15719 3.27118 2.73043 3.16274 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.86982 3.47591 0.13017 3.36931 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 0.15719 3.27118 2.73043 3.16274 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_sevenj_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:58:24 2012 NSEQ 4 EFFN 3.230469 CKSUM 1413873171 STATS LOCAL MSV -8.0313 0.71932 STATS LOCAL VITERBI -7.5228 0.71932 STATS LOCAL FORWARD -4.0558 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40654 1.32503 1.38182 1.43510 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 0.00000 * 1 3.05845 2.57594 3.10775 0.18362 1 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 2 2.92650 3.55724 0.12055 3.45877 2 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 3 0.14592 3.35028 2.78241 3.24912 3 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 4 3.39853 0.13441 3.44944 2.80375 4 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 5 3.05845 2.57594 3.10775 0.18362 5 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 6 3.39853 0.13441 3.44944 2.80375 6 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 7 3.05845 2.57594 3.10775 0.18362 7 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 8 3.39853 0.13441 3.44944 2.80375 8 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 9 2.92650 3.55724 0.12055 3.45877 9 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 10 2.92650 3.55724 0.12055 3.45877 10 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 11 3.39853 0.13441 3.44944 2.80375 11 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 12 0.14592 3.35028 2.78241 3.24912 12 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 13 0.14592 3.35028 2.78241 3.24912 13 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 14 3.39853 0.13441 3.44944 2.80375 14 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 15 2.92650 3.55724 0.12055 3.45877 15 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 16 2.92650 3.55724 0.12055 3.45877 16 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 17 0.14592 3.35028 2.78241 3.24912 17 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 18 3.05845 2.57594 3.10775 0.18362 18 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 19 0.14592 3.35028 2.78241 3.24912 19 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 20 3.05845 2.57594 3.10775 0.18362 20 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 21 3.39853 0.13441 3.44944 2.80375 21 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 22 3.05845 2.57594 3.10775 0.18362 22 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 23 3.05845 2.57594 3.10775 0.18362 23 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 24 2.92650 3.55724 0.12055 3.45877 24 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 25 2.92650 3.55724 0.12055 3.45877 25 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 26 3.39853 0.13441 3.44944 2.80375 26 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 27 3.05845 2.57594 3.10775 0.18362 27 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 28 3.39853 0.13441 3.44944 2.80375 28 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 29 3.39853 0.13441 3.44944 2.80375 29 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 30 3.39853 0.13441 3.44944 2.80375 30 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 31 2.92650 3.55724 0.12055 3.45877 31 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 32 3.05845 2.57594 3.10775 0.18362 32 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 33 0.14592 3.35028 2.78241 3.24912 33 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 34 3.05845 2.57594 3.10775 0.18362 34 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 35 3.39853 0.13441 3.44944 2.80375 35 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 36 2.92650 3.55724 0.12055 3.45877 36 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 37 0.14592 3.35028 2.78241 3.24912 37 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 38 3.05845 2.57594 3.10775 0.18362 38 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 39 2.92650 3.55724 0.12055 3.45877 39 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 40 0.14592 3.35028 2.78241 3.24912 40 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 41 0.14592 3.35028 2.78241 3.24912 41 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 42 2.92650 3.55724 0.12055 3.45877 42 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 43 0.14592 3.35028 2.78241 3.24912 43 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 44 0.14592 3.35028 2.78241 3.24912 44 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 45 3.39853 0.13441 3.44944 2.80375 45 - - 1.38629 1.38629 1.38629 1.38629 0.01894 3.97602 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_sevenk_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:58:30 2012 NSEQ 5 EFFN 3.217773 CKSUM 3068909412 STATS LOCAL MSV -8.0273 0.71930 STATS LOCAL VITERBI -7.4396 0.71930 STATS LOCAL FORWARD -3.9665 0.71930 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34043 1.32830 1.38034 1.50578 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 0.00000 * 1 3.05424 2.57325 3.10370 0.18432 1 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 2 2.92353 3.55295 0.12104 3.45404 2 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 3 0.14649 3.34608 2.77966 3.24453 3 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 4 3.39368 0.13501 3.44479 2.80020 4 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 5 3.05424 2.57325 3.10370 0.18432 5 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 6 3.39368 0.13501 3.44479 2.80020 6 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 7 3.05424 2.57325 3.10370 0.18432 7 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 8 3.39368 0.13501 3.44479 2.80020 8 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 9 2.92353 3.55295 0.12104 3.45404 9 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 10 2.92353 3.55295 0.12104 3.45404 10 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 11 3.39368 0.13501 3.44479 2.80020 11 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 12 0.14649 3.34608 2.77966 3.24453 12 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 13 0.14649 3.34608 2.77966 3.24453 13 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 14 3.39368 0.13501 3.44479 2.80020 14 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 15 2.92353 3.55295 0.12104 3.45404 15 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 16 2.92353 3.55295 0.12104 3.45404 16 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 17 0.14649 3.34608 2.77966 3.24453 17 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 18 3.05424 2.57325 3.10370 0.18432 18 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 19 0.14649 3.34608 2.77966 3.24453 19 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 20 3.05424 2.57325 3.10370 0.18432 20 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 21 3.39368 0.13501 3.44479 2.80020 21 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 22 3.05424 2.57325 3.10370 0.18432 22 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 23 0.14649 3.34608 2.77966 3.24453 23 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 24 2.92353 3.55295 0.12104 3.45404 24 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 25 2.92353 3.55295 0.12104 3.45404 25 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 26 3.39368 0.13501 3.44479 2.80020 26 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 27 3.05424 2.57325 3.10370 0.18432 27 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 28 3.39368 0.13501 3.44479 2.80020 28 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 29 3.05424 2.57325 3.10370 0.18432 29 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 30 3.05424 2.57325 3.10370 0.18432 30 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 31 2.92353 3.55295 0.12104 3.45404 31 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 32 3.39368 0.13501 3.44479 2.80020 32 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 33 3.39368 0.13501 3.44479 2.80020 33 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 34 0.14649 3.34608 2.77966 3.24453 34 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 35 3.39368 0.13501 3.44479 2.80020 35 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 36 2.92353 3.55295 0.12104 3.45404 36 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 37 0.14649 3.34608 2.77966 3.24453 37 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 38 3.05424 2.57325 3.10370 0.18432 38 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 39 2.92353 3.55295 0.12104 3.45404 39 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 40 0.14649 3.34608 2.77966 3.24453 40 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 41 0.14649 3.34608 2.77966 3.24453 41 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 42 2.92353 3.55295 0.12104 3.45404 42 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 43 0.14649 3.34608 2.77966 3.24453 43 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 44 0.14649 3.34608 2.77966 3.24453 44 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 45 3.39368 0.13501 3.44479 2.80020 45 - - 1.38629 1.38629 1.38629 1.38629 0.01898 3.97364 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_sevenl_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:58:36 2012 NSEQ 6 EFFN 3.260742 CKSUM 1522618069 STATS LOCAL MSV -7.9109 0.71931 STATS LOCAL VITERBI -7.6232 0.71931 STATS LOCAL FORWARD -4.3580 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33594 1.46037 1.37844 1.37450 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 0.00000 * 1 0.14457 3.36023 2.78889 3.26000 1 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 2 2.93350 3.56738 0.11941 3.46995 2 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 3 0.14457 3.36023 2.78889 3.26000 3 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 4 3.41001 0.13300 3.46044 2.81215 4 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 5 3.06843 2.58230 3.11735 0.18196 5 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 6 3.41001 0.13300 3.46044 2.81215 6 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 7 3.06843 2.58230 3.11735 0.18196 7 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 8 3.06843 2.58230 3.11735 0.18196 8 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 9 2.93350 3.56738 0.11941 3.46995 9 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 10 2.93350 3.56738 0.11941 3.46995 10 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 11 3.41001 0.13300 3.46044 2.81215 11 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 12 0.14457 3.36023 2.78889 3.26000 12 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 13 0.14457 3.36023 2.78889 3.26000 13 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 14 3.06843 2.58230 3.11735 0.18196 14 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 15 2.93350 3.56738 0.11941 3.46995 15 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 16 2.93350 3.56738 0.11941 3.46995 16 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 17 0.14457 3.36023 2.78889 3.26000 17 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 18 3.06843 2.58230 3.11735 0.18196 18 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 19 0.14457 3.36023 2.78889 3.26000 19 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 20 3.06843 2.58230 3.11735 0.18196 20 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 21 3.41001 0.13300 3.46044 2.81215 21 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 22 3.06843 2.58230 3.11735 0.18196 22 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 23 3.41001 0.13300 3.46044 2.81215 23 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 24 2.93350 3.56738 0.11941 3.46995 24 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 25 2.93350 3.56738 0.11941 3.46995 25 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 26 3.41001 0.13300 3.46044 2.81215 26 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 27 3.06843 2.58230 3.11735 0.18196 27 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 28 3.41001 0.13300 3.46044 2.81215 28 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 29 3.06843 2.58230 3.11735 0.18196 29 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 30 3.06843 2.58230 3.11735 0.18196 30 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 31 2.93350 3.56738 0.11941 3.46995 31 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 32 3.41001 0.13300 3.46044 2.81215 32 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 33 0.14457 3.36023 2.78889 3.26000 33 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 34 3.06843 2.58230 3.11735 0.18196 34 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 35 3.41001 0.13300 3.46044 2.81215 35 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 36 2.93350 3.56738 0.11941 3.46995 36 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 37 0.14457 3.36023 2.78889 3.26000 37 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 38 3.06843 2.58230 3.11735 0.18196 38 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 39 2.93350 3.56738 0.11941 3.46995 39 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 40 0.14457 3.36023 2.78889 3.26000 40 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 41 0.14457 3.36023 2.78889 3.26000 41 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 42 2.93350 3.56738 0.11941 3.46995 42 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 43 0.14457 3.36023 2.78889 3.26000 43 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 44 0.14457 3.36023 2.78889 3.26000 44 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 45 3.41001 0.13300 3.46044 2.81215 45 - - 1.38629 1.38629 1.38629 1.38629 0.01883 3.98169 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_sevenm_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:58:41 2012 NSEQ 3 EFFN 3.000000 CKSUM 3456743413 STATS LOCAL MSV -7.9235 0.72006 STATS LOCAL VITERBI -7.5962 0.72006 STATS LOCAL FORWARD -3.5311 0.72006 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.28260 1.21341 1.44975 1.65613 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 3.30705 0.14631 3.36166 2.73626 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.15719 3.27118 2.73043 3.16274 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 0.15719 3.27118 2.73043 3.16274 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.30705 0.14631 3.36166 2.73626 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 3.30705 0.14631 3.36166 2.73626 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.15719 3.27118 2.73043 3.16274 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.15719 3.27118 2.73043 3.16274 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.97980 2.52563 3.03204 0.19727 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.30705 0.14631 3.36166 2.73626 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.97980 2.52563 3.03204 0.19727 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.97980 2.52563 3.03204 0.19727 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.86982 3.47591 0.13017 3.36931 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 0.15719 3.27118 2.73043 3.16274 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 0.15719 3.27118 2.73043 3.16274 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.15719 3.27118 2.73043 3.16274 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.86982 3.47591 0.13017 3.36931 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 0.15719 3.27118 2.73043 3.16274 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_sevenn_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:58:46 2012 NSEQ 3 EFFN 3.000000 CKSUM 239138404 STATS LOCAL MSV -7.8873 0.72025 STATS LOCAL VITERBI -7.6451 0.72025 STATS LOCAL FORWARD -3.8332 0.72025 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40577 1.32699 1.38047 1.43511 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.97980 2.52563 3.03204 0.19727 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.15719 3.27118 2.73043 3.16274 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.30705 0.14631 3.36166 2.73626 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 3.30705 0.14631 3.36166 2.73626 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.15719 3.27118 2.73043 3.16274 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.15719 3.27118 2.73043 3.16274 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.97980 2.52563 3.03204 0.19727 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.30705 0.14631 3.36166 2.73626 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.97980 2.52563 3.03204 0.19727 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.97980 2.52563 3.03204 0.19727 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.86982 3.47591 0.13017 3.36931 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.97980 2.52563 3.03204 0.19727 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 0.15719 3.27118 2.73043 3.16274 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.15719 3.27118 2.73043 3.16274 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.86982 3.47591 0.13017 3.36931 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 0.15719 3.27118 2.73043 3.16274 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_seveno_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:58:53 2012 NSEQ 25 EFFN 3.305054 CKSUM 615057231 STATS LOCAL MSV -8.1082 0.71933 STATS LOCAL VITERBI -7.6429 0.71933 STATS LOCAL FORWARD -3.7763 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.36993 1.20241 1.43339 1.57550 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 0.00000 * 1 3.42658 0.13099 3.47632 2.82425 1 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 2 2.94358 3.58201 0.11779 3.48608 2 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 3 0.14264 3.37460 2.79825 3.27573 3 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 4 3.42658 0.13099 3.47632 2.82425 4 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 5 3.08290 2.59151 3.13127 0.17960 5 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 6 3.42658 0.13099 3.47632 2.82425 6 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 7 3.08290 2.59151 3.13127 0.17960 7 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 8 3.42658 0.13099 3.47632 2.82425 8 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 9 2.94358 3.58201 0.11779 3.48608 9 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 10 0.64013 2.55391 1.18659 2.41084 10 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 11 3.42658 0.13099 3.47632 2.82425 11 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 12 0.14264 3.37460 2.79825 3.27573 12 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 13 0.14264 3.37460 2.79825 3.27573 13 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 14 3.42658 0.13099 3.47632 2.82425 14 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 15 2.94358 3.58201 0.11779 3.48608 15 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 16 2.94358 3.58201 0.11779 3.48608 16 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 17 0.14264 3.37460 2.79825 3.27573 17 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 18 3.08290 2.59151 3.13127 0.17960 18 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 19 0.14264 3.37460 2.79825 3.27573 19 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 20 3.08290 2.59151 3.13127 0.17960 20 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 21 3.42658 0.13099 3.47632 2.82425 21 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 22 3.08290 2.59151 3.13127 0.17960 22 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 23 3.42658 0.13099 3.47632 2.82425 23 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 24 2.94358 3.58201 0.11779 3.48608 24 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 25 2.94358 3.58201 0.11779 3.48608 25 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 26 3.42658 0.13099 3.47632 2.82425 26 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 27 3.08290 2.59151 3.13127 0.17960 27 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 28 3.42658 0.13099 3.47632 2.82425 28 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 29 3.08290 2.59151 3.13127 0.17960 29 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 30 3.42658 0.13099 3.47632 2.82425 30 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 31 2.94358 3.58201 0.11779 3.48608 31 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 32 3.42658 0.13099 3.47632 2.82425 32 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 33 0.14264 3.37460 2.79825 3.27573 33 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 34 3.08290 2.59151 3.13127 0.17960 34 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 35 3.42658 0.13099 3.47632 2.82425 35 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 36 2.94358 3.58201 0.11779 3.48608 36 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 37 0.14264 3.37460 2.79825 3.27573 37 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 38 3.08290 2.59151 3.13127 0.17960 38 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 39 2.94358 3.58201 0.11779 3.48608 39 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 40 0.14264 3.37460 2.79825 3.27573 40 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 41 0.14264 3.37460 2.79825 3.27573 41 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 42 2.94358 3.58201 0.11779 3.48608 42 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 43 0.14264 3.37460 2.79825 3.27573 43 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 44 0.14264 3.37460 2.79825 3.27573 44 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00825 4.00825 1.46634 0.26236 1.09861 0.40547 45 3.42658 0.13099 3.47632 2.82425 45 - - 1.38629 1.38629 1.38629 1.38629 0.01867 3.98992 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_sevenp_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:58:57 2012 NSEQ 4 EFFN 3.191406 CKSUM 3224455691 STATS LOCAL MSV -8.0922 0.71932 STATS LOCAL VITERBI -7.4985 0.71932 STATS LOCAL FORWARD -3.9868 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34156 1.26862 1.38126 1.57949 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 0.00000 * 1 3.04545 2.56765 3.09524 0.18579 1 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 2 2.91732 3.54398 0.12206 3.44415 2 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 3 0.14770 3.33730 2.77393 3.23493 3 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 4 3.38354 0.13628 3.43507 2.79277 4 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 5 3.04545 2.56765 3.09524 0.18579 5 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 6 3.38354 0.13628 3.43507 2.79277 6 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 7 3.38354 0.13628 3.43507 2.79277 7 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 8 3.38354 0.13628 3.43507 2.79277 8 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 9 2.91732 3.54398 0.12206 3.44415 9 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 10 2.91732 3.54398 0.12206 3.44415 10 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 11 3.38354 0.13628 3.43507 2.79277 11 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 12 0.14770 3.33730 2.77393 3.23493 12 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 13 0.14770 3.33730 2.77393 3.23493 13 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 14 3.38354 0.13628 3.43507 2.79277 14 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 15 2.91732 3.54398 0.12206 3.44415 15 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 16 2.91732 3.54398 0.12206 3.44415 16 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 17 0.14770 3.33730 2.77393 3.23493 17 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 18 3.04545 2.56765 3.09524 0.18579 18 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 19 0.14770 3.33730 2.77393 3.23493 19 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 20 3.04545 2.56765 3.09524 0.18579 20 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 21 3.38354 0.13628 3.43507 2.79277 21 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 22 3.04545 2.56765 3.09524 0.18579 22 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 23 0.14770 3.33730 2.77393 3.23493 23 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 24 2.91732 3.54398 0.12206 3.44415 24 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 25 2.91732 3.54398 0.12206 3.44415 25 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 26 3.38354 0.13628 3.43507 2.79277 26 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 27 3.04545 2.56765 3.09524 0.18579 27 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 28 3.38354 0.13628 3.43507 2.79277 28 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 29 3.04545 2.56765 3.09524 0.18579 29 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 30 3.38354 0.13628 3.43507 2.79277 30 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 31 2.91732 3.54398 0.12206 3.44415 31 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 32 3.38354 0.13628 3.43507 2.79277 32 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 33 0.14770 3.33730 2.77393 3.23493 33 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 34 3.04545 2.56765 3.09524 0.18579 34 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 35 3.38354 0.13628 3.43507 2.79277 35 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 36 2.91732 3.54398 0.12206 3.44415 36 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 37 0.14770 3.33730 2.77393 3.23493 37 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 38 3.04545 2.56765 3.09524 0.18579 38 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 39 2.91732 3.54398 0.12206 3.44415 39 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 40 0.14770 3.33730 2.77393 3.23493 40 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 41 0.14770 3.33730 2.77393 3.23493 41 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 42 2.91732 3.54398 0.12206 3.44415 42 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 43 0.14770 3.33730 2.77393 3.23493 43 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 44 0.14770 3.33730 2.77393 3.23493 44 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 45 3.38354 0.13628 3.43507 2.79277 45 - - 1.38629 1.38629 1.38629 1.38629 0.01908 3.96867 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_sevenr_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:59:15 2012 NSEQ 74 EFFN 3.184204 CKSUM 2229931290 STATS LOCAL MSV -8.1546 0.71932 STATS LOCAL VITERBI -7.7675 0.71932 STATS LOCAL FORWARD -3.8541 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40873 1.20772 1.38372 1.57976 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 0.00000 * 1 3.38075 0.13663 3.43240 2.79072 1 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 2 2.91561 3.54151 0.12235 3.44143 2 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 3 0.14804 3.33489 2.77235 3.23229 3 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 4 3.38075 0.13663 3.43240 2.79072 4 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 5 3.04304 2.56611 3.09292 0.18620 5 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 6 3.38075 0.13663 3.43240 2.79072 6 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 7 3.04304 2.56611 3.09292 0.18620 7 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 8 3.38075 0.13663 3.43240 2.79072 8 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 9 2.91561 3.54151 0.12235 3.44143 9 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 10 2.91561 3.54151 0.12235 3.44143 10 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 11 3.38075 0.13663 3.43240 2.79072 11 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 12 0.14804 3.33489 2.77235 3.23229 12 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 13 0.14804 3.33489 2.77235 3.23229 13 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 14 3.38075 0.13663 3.43240 2.79072 14 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 15 2.91561 3.54151 0.12235 3.44143 15 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 16 2.91561 3.54151 0.12235 3.44143 16 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 17 0.14804 3.33489 2.77235 3.23229 17 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 18 3.04304 2.56611 3.09292 0.18620 18 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 19 0.14804 3.33489 2.77235 3.23229 19 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 20 3.04304 2.56611 3.09292 0.18620 20 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 21 3.38075 0.13663 3.43240 2.79072 21 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 22 3.04304 2.56611 3.09292 0.18620 22 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 23 3.38075 0.13663 3.43240 2.79072 23 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 24 2.91561 3.54151 0.12235 3.44143 24 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 25 2.91561 3.54151 0.12235 3.44143 25 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 26 3.38075 0.13663 3.43240 2.79072 26 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 27 3.04304 2.56611 3.09292 0.18620 27 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 28 3.38075 0.13663 3.43240 2.79072 28 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 29 3.04304 2.56611 3.09292 0.18620 29 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 30 3.38075 0.13663 3.43240 2.79072 30 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 31 2.91561 3.54151 0.12235 3.44143 31 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 32 3.38075 0.13663 3.43240 2.79072 32 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 33 0.14804 3.33489 2.77235 3.23229 33 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 34 3.04304 2.56611 3.09292 0.18620 34 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 35 3.38075 0.13663 3.43240 2.79072 35 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 36 2.91561 3.54151 0.12235 3.44143 36 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 37 0.14804 3.33489 2.77235 3.23229 37 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 38 3.04304 2.56611 3.09292 0.18620 38 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 39 2.91561 3.54151 0.12235 3.44143 39 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 40 0.14804 3.33489 2.77235 3.23229 40 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 41 0.14804 3.33489 2.77235 3.23229 41 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 42 2.91561 3.54151 0.12235 3.44143 42 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 43 0.14804 3.33489 2.77235 3.23229 43 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 44 0.14804 3.33489 2.77235 3.23229 44 - - 1.38629 1.38629 1.38629 1.38629 0.03785 3.98605 3.98605 1.46634 0.26236 1.09861 0.40547 45 3.38075 0.13663 3.43240 2.79072 45 - - 1.38629 1.38629 1.38629 1.38629 0.01911 3.96731 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_sevens_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:59:22 2012 NSEQ 26 EFFN 3.310303 CKSUM 3119625533 STATS LOCAL MSV -8.1714 0.71932 STATS LOCAL VITERBI -7.5462 0.71932 STATS LOCAL FORWARD -4.0110 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33741 1.25636 1.37825 1.60561 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 0.00000 * 1 3.42853 0.13075 3.47818 2.82567 1 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 2 2.94476 3.58372 0.11760 3.48798 2 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 3 0.14242 3.37629 2.79934 3.27758 3 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 4 3.42853 0.13075 3.47818 2.82567 4 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 5 3.08460 2.59259 3.13291 0.17932 5 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 6 3.42853 0.13075 3.47818 2.82567 6 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 7 2.48923 1.32755 2.55816 0.55433 7 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 8 3.42853 0.13075 3.47818 2.82567 8 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 9 2.94476 3.58372 0.11760 3.48798 9 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 10 2.94476 3.58372 0.11760 3.48798 10 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 11 3.42853 0.13075 3.47818 2.82567 11 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 12 0.14242 3.37629 2.79934 3.27758 12 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 13 0.14242 3.37629 2.79934 3.27758 13 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 14 3.42853 0.13075 3.47818 2.82567 14 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 15 2.94476 3.58372 0.11760 3.48798 15 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 16 2.94476 3.58372 0.11760 3.48798 16 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 17 0.14242 3.37629 2.79934 3.27758 17 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 18 3.08460 2.59259 3.13291 0.17932 18 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 19 0.14242 3.37629 2.79934 3.27758 19 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 20 3.08460 2.59259 3.13291 0.17932 20 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 21 3.10916 0.21109 3.16829 2.26736 21 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 22 3.08460 2.59259 3.13291 0.17932 22 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 23 0.14242 3.37629 2.79934 3.27758 23 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 24 2.94476 3.58372 0.11760 3.48798 24 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 25 2.94476 3.58372 0.11760 3.48798 25 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 26 3.42853 0.13075 3.47818 2.82567 26 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 27 3.08460 2.59259 3.13291 0.17932 27 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 28 3.42853 0.13075 3.47818 2.82567 28 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 29 3.08460 2.59259 3.13291 0.17932 29 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 30 3.42853 0.13075 3.47818 2.82567 30 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 31 2.94476 3.58372 0.11760 3.48798 31 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 32 3.42853 0.13075 3.47818 2.82567 32 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 33 0.14242 3.37629 2.79934 3.27758 33 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 34 3.08460 2.59259 3.13291 0.17932 34 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 35 3.42853 0.13075 3.47818 2.82567 35 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 36 2.94476 3.58372 0.11760 3.48798 36 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 37 0.14242 3.37629 2.79934 3.27758 37 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 38 3.08460 2.59259 3.13291 0.17932 38 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 39 2.94476 3.58372 0.11760 3.48798 39 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 40 0.14242 3.37629 2.79934 3.27758 40 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 41 0.14242 3.37629 2.79934 3.27758 41 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 42 2.94476 3.58372 0.11760 3.48798 42 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 43 0.14242 3.37629 2.79934 3.27758 43 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 44 0.14242 3.37629 2.79934 3.27758 44 - - 1.38629 1.38629 1.38629 1.38629 0.03697 4.00920 4.00920 1.46634 0.26236 1.09861 0.40547 45 3.42853 0.13075 3.47818 2.82567 45 - - 1.38629 1.38629 1.38629 1.38629 0.01866 3.99089 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_sevent_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:59:29 2012 NSEQ 45 EFFN 3.331604 CKSUM 206813971 STATS LOCAL MSV -8.1957 0.71932 STATS LOCAL VITERBI -7.6561 0.71932 STATS LOCAL FORWARD -3.8955 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.38293 1.23894 1.37747 1.57383 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 0.00000 * 1 3.43639 0.12982 3.48571 2.83139 1 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 2 2.94952 3.59065 0.11684 3.49562 2 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 3 0.14152 3.38311 2.80378 3.28505 3 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 4 3.43639 0.12982 3.48571 2.83139 4 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 5 3.09149 2.59697 3.13953 0.17821 5 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 6 3.43639 0.12982 3.48571 2.83139 6 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 7 3.09149 2.59697 3.13953 0.17821 7 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 8 3.43639 0.12982 3.48571 2.83139 8 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 9 2.94952 3.59065 0.11684 3.49562 9 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 10 2.94952 3.59065 0.11684 3.49562 10 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 11 3.43639 0.12982 3.48571 2.83139 11 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 12 0.14152 3.38311 2.80378 3.28505 12 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 13 0.14152 3.38311 2.80378 3.28505 13 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 14 3.43639 0.12982 3.48571 2.83139 14 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 15 2.94952 3.59065 0.11684 3.49562 15 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 16 2.94952 3.59065 0.11684 3.49562 16 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 17 0.14152 3.38311 2.80378 3.28505 17 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 18 3.09149 2.59697 3.13953 0.17821 18 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 19 0.14152 3.38311 2.80378 3.28505 19 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 20 3.09149 2.59697 3.13953 0.17821 20 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 21 3.43639 0.12982 3.48571 2.83139 21 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 22 3.09149 2.59697 3.13953 0.17821 22 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 23 1.05652 0.92289 2.14755 1.97908 23 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 24 2.94952 3.59065 0.11684 3.49562 24 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 25 2.94952 3.59065 0.11684 3.49562 25 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 26 3.43639 0.12982 3.48571 2.83139 26 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 27 3.09149 2.59697 3.13953 0.17821 27 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 28 3.43639 0.12982 3.48571 2.83139 28 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 29 3.09149 2.59697 3.13953 0.17821 29 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 30 3.43639 0.12982 3.48571 2.83139 30 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 31 2.94952 3.59065 0.11684 3.49562 31 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 32 3.43639 0.12982 3.48571 2.83139 32 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 33 0.14152 3.38311 2.80378 3.28505 33 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 34 3.09149 2.59697 3.13953 0.17821 34 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 35 3.43639 0.12982 3.48571 2.83139 35 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 36 2.94952 3.59065 0.11684 3.49562 36 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 37 0.14152 3.38311 2.80378 3.28505 37 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 38 3.09149 2.59697 3.13953 0.17821 38 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 39 2.94952 3.59065 0.11684 3.49562 39 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 40 0.14152 3.38311 2.80378 3.28505 40 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 41 0.14152 3.38311 2.80378 3.28505 41 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 42 2.94952 3.59065 0.11684 3.49562 42 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 43 0.14152 3.38311 2.80378 3.28505 43 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 44 0.14152 3.38311 2.80378 3.28505 44 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 45 3.43639 0.12982 3.48571 2.83139 45 - - 1.38629 1.38629 1.38629 1.38629 0.01858 3.99482 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_sevenu_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:59:44 2012 NSEQ 29 EFFN 3.196655 CKSUM 1208045264 STATS LOCAL MSV -8.0269 0.71932 STATS LOCAL VITERBI -7.6133 0.71932 STATS LOCAL FORWARD -3.7499 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34312 1.20706 1.45348 1.57920 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 0.00000 * 1 3.38556 0.13603 3.43701 2.79425 1 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 2 2.91856 3.54577 0.12186 3.44613 2 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 3 0.14746 3.33905 2.77507 3.23685 3 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 4 3.38556 0.13603 3.43701 2.79425 4 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 5 3.04720 2.56877 3.09693 0.18550 5 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 6 3.38556 0.13603 3.43701 2.79425 6 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 7 3.04720 2.56877 3.09693 0.18550 7 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 8 3.38556 0.13603 3.43701 2.79425 8 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 9 2.91856 3.54577 0.12186 3.44613 9 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 10 0.14746 3.33905 2.77507 3.23685 10 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 11 3.38556 0.13603 3.43701 2.79425 11 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 12 0.14746 3.33905 2.77507 3.23685 12 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 13 0.14746 3.33905 2.77507 3.23685 13 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 14 3.38556 0.13603 3.43701 2.79425 14 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 15 2.91856 3.54577 0.12186 3.44613 15 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 16 2.91856 3.54577 0.12186 3.44613 16 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 17 0.14746 3.33905 2.77507 3.23685 17 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 18 3.04720 2.56877 3.09693 0.18550 18 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 19 0.14746 3.33905 2.77507 3.23685 19 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 20 3.04720 2.56877 3.09693 0.18550 20 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 21 3.38556 0.13603 3.43701 2.79425 21 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 22 3.04720 2.56877 3.09693 0.18550 22 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 23 3.38556 0.13603 3.43701 2.79425 23 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 24 2.91856 3.54577 0.12186 3.44613 24 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 25 2.91856 3.54577 0.12186 3.44613 25 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 26 3.38556 0.13603 3.43701 2.79425 26 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 27 3.04720 2.56877 3.09693 0.18550 27 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 28 3.38556 0.13603 3.43701 2.79425 28 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 29 3.04720 2.56877 3.09693 0.18550 29 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 30 3.38556 0.13603 3.43701 2.79425 30 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 31 2.91856 3.54577 0.12186 3.44613 31 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 32 3.38556 0.13603 3.43701 2.79425 32 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 33 0.14746 3.33905 2.77507 3.23685 33 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 34 3.04720 2.56877 3.09693 0.18550 34 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 35 3.38556 0.13603 3.43701 2.79425 35 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 36 2.91856 3.54577 0.12186 3.44613 36 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 37 0.14746 3.33905 2.77507 3.23685 37 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 38 3.04720 2.56877 3.09693 0.18550 38 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 39 2.91856 3.54577 0.12186 3.44613 39 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 40 0.14746 3.33905 2.77507 3.23685 40 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 41 0.14746 3.33905 2.77507 3.23685 41 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 42 2.91856 3.54577 0.12186 3.44613 42 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 43 0.14746 3.33905 2.77507 3.23685 43 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 44 0.14746 3.33905 2.77507 3.23685 44 - - 1.38629 1.38629 1.38629 1.38629 0.03776 3.98836 3.98836 1.46634 0.26236 1.09861 0.40547 45 3.38556 0.13603 3.43701 2.79425 45 - - 1.38629 1.38629 1.38629 1.38629 0.01906 3.96966 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_six_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:57:14 2012 NSEQ 25 EFFN 3.634644 CKSUM 3375772547 STATS LOCAL MSV -7.6909 0.71933 STATS LOCAL VITERBI -7.6485 0.71933 STATS LOCAL FORWARD -4.2957 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.41402 1.35683 1.31536 1.46541 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 0.00000 * 1 3.01261 3.68311 0.10724 3.59789 1 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 2 3.01261 3.68311 0.10724 3.59789 2 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 3 0.20058 3.22612 2.32391 3.12033 3 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 4 3.54206 0.11793 3.58677 2.90766 4 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 5 3.18542 2.65659 3.22983 0.16383 5 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 6 3.54206 0.11793 3.58677 2.90766 6 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 7 2.45961 0.91446 2.53114 0.83418 7 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 8 3.54206 0.11793 3.58677 2.90766 8 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 9 1.15707 2.62856 0.63457 2.48594 9 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 10 0.63166 2.60938 1.17129 2.46809 10 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 11 3.54206 0.11793 3.58677 2.90766 11 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 12 0.12998 3.47513 2.86322 3.38593 12 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 13 0.12998 3.47513 2.86322 3.38593 13 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 14 3.18542 2.65659 3.22983 0.16383 14 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 15 3.01261 3.68311 0.10724 3.59789 15 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 16 3.01261 3.68311 0.10724 3.59789 16 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 17 0.12998 3.47513 2.86322 3.38593 17 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 18 3.18542 2.65659 3.22983 0.16383 18 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 19 0.12998 3.47513 2.86322 3.38593 19 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 20 3.18542 2.65659 3.22983 0.16383 20 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 21 3.54206 0.11793 3.58677 2.90766 21 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 22 3.18542 2.65659 3.22983 0.16383 22 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 23 3.18542 2.65659 3.22983 0.16383 23 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 24 3.01261 3.68311 0.10724 3.59789 24 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 25 3.01261 3.68311 0.10724 3.59789 25 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 26 3.54206 0.11793 3.58677 2.90766 26 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 27 3.18542 2.65659 3.22983 0.16383 27 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 28 3.54206 0.11793 3.58677 2.90766 28 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 29 3.18542 2.65659 3.22983 0.16383 29 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 30 3.54206 0.11793 3.58677 2.90766 30 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 31 3.01261 3.68311 0.10724 3.59789 31 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 32 3.54206 0.11793 3.58677 2.90766 32 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 33 0.12998 3.47513 2.86322 3.38593 33 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 34 3.18542 2.65659 3.22983 0.16383 34 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 35 3.54206 0.11793 3.58677 2.90766 35 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 36 3.01261 3.68311 0.10724 3.59789 36 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 37 0.12998 3.47513 2.86322 3.38593 37 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 38 3.18542 2.65659 3.22983 0.16383 38 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 39 3.01261 3.68311 0.10724 3.59789 39 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 40 0.12998 3.47513 2.86322 3.38593 40 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 41 0.12998 3.47513 2.86322 3.38593 41 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 42 3.01261 3.68311 0.10724 3.59789 42 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 43 0.12998 3.47513 2.86322 3.38593 43 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 44 3.01261 3.68311 0.10724 3.59789 44 - - 1.38629 1.38629 1.38629 1.38629 0.03488 4.06640 4.06640 1.46634 0.26236 1.09861 0.40547 45 3.54206 0.11793 3.58677 2.90766 45 - - 1.38629 1.38629 1.38629 1.38629 0.01759 4.04911 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_ten_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:14:50 2012 NSEQ 8 EFFN 3.410156 CKSUM 2247624815 STATS LOCAL MSV -7.6172 0.71932 STATS LOCAL VITERBI -7.5031 0.71932 STATS LOCAL FORWARD -4.1590 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33211 1.33801 1.36527 1.52141 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 0.00000 * 1 2.29532 0.53992 1.62521 2.12354 1 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 2 2.96668 3.61569 0.11415 3.52327 2 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 3 0.13830 3.40786 2.81982 3.31216 3 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 4 3.46489 0.12648 3.51299 2.85207 4 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 5 3.11656 2.61290 3.16364 0.17424 5 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 6 3.46489 0.12648 3.51299 2.85207 6 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 7 3.11656 2.61290 3.16364 0.17424 7 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 8 3.46489 0.12648 3.51299 2.85207 8 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 9 2.96668 3.61569 0.11415 3.52327 9 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 10 2.96668 3.61569 0.11415 3.52327 10 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 11 3.46489 0.12648 3.51299 2.85207 11 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 12 0.13830 3.40786 2.81982 3.31216 12 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 13 0.13830 3.40786 2.81982 3.31216 13 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 14 2.61100 1.55260 2.67637 0.43691 14 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 15 2.96668 3.61569 0.11415 3.52327 15 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 16 2.96668 3.61569 0.11415 3.52327 16 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 17 0.13830 3.40786 2.81982 3.31216 17 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 18 3.11656 2.61290 3.16364 0.17424 18 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 19 0.13830 3.40786 2.81982 3.31216 19 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 20 3.11656 2.61290 3.16364 0.17424 20 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 21 3.46489 0.12648 3.51299 2.85207 21 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 22 3.11656 2.61290 3.16364 0.17424 22 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 23 0.13830 3.40786 2.81982 3.31216 23 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 24 2.96668 3.61569 0.11415 3.52327 24 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 25 2.96668 3.61569 0.11415 3.52327 25 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 26 3.46489 0.12648 3.51299 2.85207 26 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 27 3.11656 2.61290 3.16364 0.17424 27 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 28 3.46489 0.12648 3.51299 2.85207 28 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 29 3.11656 2.61290 3.16364 0.17424 29 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 30 3.46489 0.12648 3.51299 2.85207 30 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 31 2.96668 3.61569 0.11415 3.52327 31 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 32 3.46489 0.12648 3.51299 2.85207 32 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 33 0.13830 3.40786 2.81982 3.31216 33 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 34 3.11656 2.61290 3.16364 0.17424 34 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 35 3.46489 0.12648 3.51299 2.85207 35 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 36 2.96668 3.61569 0.11415 3.52327 36 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 37 0.13830 3.40786 2.81982 3.31216 37 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 38 3.11656 2.61290 3.16364 0.17424 38 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 39 2.96668 3.61569 0.11415 3.52327 39 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 40 0.13830 3.40786 2.81982 3.31216 40 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 41 0.13830 3.40786 2.81982 3.31216 41 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 42 2.96668 3.61569 0.11415 3.52327 42 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 43 0.13830 3.40786 2.81982 3.31216 43 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 44 0.13830 3.40786 2.81982 3.31216 44 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02716 4.02716 1.46634 0.26236 1.09861 0.40547 45 3.46489 0.12648 3.51299 2.85207 45 - - 1.38629 1.38629 1.38629 1.38629 0.01832 4.00918 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:55:24 2012 NSEQ 2 EFFN 2.000000 CKSUM 3870492215 STATS LOCAL MSV -7.3319 0.72969 STATS LOCAL VITERBI -8.2230 0.72969 STATS LOCAL FORWARD -3.4162 0.72969 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.26546 1.40829 1.55378 1.33987 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.57915 2.25909 2.64442 0.28946 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.15554 1.00938 2.23102 0.88601 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.23862 2.84929 2.43386 2.70756 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23862 2.84929 2.43386 2.70756 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 1.01448 1.11006 1.95471 1.79419 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.81865 0.23582 2.88868 2.35662 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_twelve_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 16:15:47 2012 NSEQ 2 EFFN 2.000000 CKSUM 3193425339 STATS LOCAL MSV -7.4743 0.72839 STATS LOCAL VITERBI -8.4610 0.72839 STATS LOCAL FORWARD -3.5279 0.72839 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.18443 1.58899 1.49130 1.32852 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23862 2.84929 2.43386 2.70756 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23862 2.84929 2.43386 2.70756 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Tracheophyta_58S_start_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Feb 17 15:55:14 2012 NSEQ 33 EFFN 4.088745 CKSUM 2745058666 STATS LOCAL MSV -7.3007 0.71933 STATS LOCAL VITERBI -7.4981 0.71933 STATS LOCAL FORWARD -4.0745 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.24255 1.32691 1.51870 1.48254 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 0.00000 * 1 3.08151 0.26039 3.14187 1.96496 1 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 2 2.24934 2.22887 0.33370 2.65056 2 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 3 0.11631 3.59700 2.94148 3.51985 3 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 4 3.68053 0.10420 3.71889 3.00607 4 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 5 3.31305 2.73756 3.35243 0.14634 5 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 6 3.68053 0.10420 3.71889 3.00607 6 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 7 3.31305 2.73756 3.35243 0.14634 7 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 8 3.68053 0.10420 3.71889 3.00607 8 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 9 0.11631 3.59700 2.94148 3.51985 9 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 10 1.36081 2.35748 0.58452 2.39123 10 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 11 3.68053 0.10420 3.71889 3.00607 11 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 12 0.11631 3.59700 2.94148 3.51985 12 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 13 0.11631 3.59700 2.94148 3.51985 13 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 14 2.99284 0.29746 3.05557 1.83222 14 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 15 1.64325 2.96875 0.36128 2.83874 15 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 16 2.61746 3.59547 0.13977 3.50636 16 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 17 0.11631 3.59700 2.94148 3.51985 17 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 18 3.31305 2.73756 3.35243 0.14634 18 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 19 0.11631 3.59700 2.94148 3.51985 19 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 20 3.31305 2.73756 3.35243 0.14634 20 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 21 3.68053 0.10420 3.71889 3.00607 21 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 22 3.31305 2.73756 3.35243 0.14634 22 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 23 3.31305 2.73756 3.35243 0.14634 23 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 24 3.09344 3.80283 0.09610 3.73076 24 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 25 3.09344 3.80283 0.09610 3.73076 25 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 26 3.68053 0.10420 3.71889 3.00607 26 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 27 3.31305 2.73756 3.35243 0.14634 27 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 28 3.68053 0.10420 3.71889 3.00607 28 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 29 3.06578 2.13738 3.11637 0.23433 29 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 30 2.99489 1.99380 3.04848 0.26612 30 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 31 3.09344 3.80283 0.09610 3.73076 31 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 32 3.68053 0.10420 3.71889 3.00607 32 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 33 0.26910 2.27149 2.63136 2.80031 33 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 34 0.11631 3.59700 2.94148 3.51985 34 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 35 2.77040 0.31631 2.50093 2.06733 35 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 36 3.09344 3.80283 0.09610 3.73076 36 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 37 0.11631 3.59700 2.94148 3.51985 37 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 38 3.31305 2.73756 3.35243 0.14634 38 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 39 3.09344 3.80283 0.09610 3.73076 39 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 40 0.11631 3.59700 2.94148 3.51985 40 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 41 0.11631 3.59700 2.94148 3.51985 41 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 42 3.09344 3.80283 0.09610 3.73076 42 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 43 0.11631 3.59700 2.94148 3.51985 43 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 44 0.11631 3.59700 2.94148 3.51985 44 - - 1.38629 1.38629 1.38629 1.38629 0.03232 4.14135 4.14135 1.46634 0.26236 1.09861 0.40547 45 3.68053 0.10420 3.71889 3.00607 45 - - 1.38629 1.38629 1.38629 1.38629 0.01629 4.12532 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_eight_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:11:54 2012 NSEQ 2 EFFN 2.000000 CKSUM 4159611321 STATS LOCAL MSV -7.6630 0.72772 STATS LOCAL VITERBI -8.2445 0.72772 STATS LOCAL FORWARD -3.1773 0.72772 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.39536 1.28586 1.21082 1.72659 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.23862 2.84929 2.43386 2.70756 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.81865 0.23582 2.88868 2.35662 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.15554 1.00938 2.23102 0.88601 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_eighteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:20:42 2012 NSEQ 33 EFFN 3.331421 CKSUM 3818006769 STATS LOCAL MSV -8.2061 0.71933 STATS LOCAL VITERBI -7.9142 0.71933 STATS LOCAL FORWARD -3.6602 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33233 1.18916 1.25067 1.92862 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 0.00000 * 1 0.14153 3.38306 2.80374 3.28498 1 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 2 2.57793 1.52098 2.64414 0.45491 2 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 3 2.94948 3.59059 0.11685 3.49555 3 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 4 3.43633 0.12982 3.48565 2.83134 4 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 5 2.94948 3.59059 0.11685 3.49555 5 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 6 0.14153 3.38306 2.80374 3.28498 6 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 7 3.43633 0.12982 3.48565 2.83134 7 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 8 3.43633 0.12982 3.48565 2.83134 8 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 9 3.43633 0.12982 3.48565 2.83134 9 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 10 3.43633 0.12982 3.48565 2.83134 10 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 11 0.14153 3.38306 2.80374 3.28498 11 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 12 2.94948 3.59059 0.11685 3.49555 12 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 13 2.94948 3.59059 0.11685 3.49555 13 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 14 0.14153 3.38306 2.80374 3.28498 14 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 15 2.41105 1.01266 2.48283 0.76891 15 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 16 2.94948 3.59059 0.11685 3.49555 16 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 17 2.94948 3.59059 0.11685 3.49555 17 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 18 2.81354 3.03622 0.16108 3.19986 18 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 19 3.43633 0.12982 3.48565 2.83134 19 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 20 2.94948 3.59059 0.11685 3.49555 20 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 21 0.14153 3.38306 2.80374 3.28498 21 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 22 2.94948 3.59059 0.11685 3.49555 22 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 23 0.14153 3.38306 2.80374 3.28498 23 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 24 3.43633 0.12982 3.48565 2.83134 24 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 25 3.43633 0.12982 3.48565 2.83134 25 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 26 0.14153 3.38306 2.80374 3.28498 26 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 27 3.43633 0.12982 3.48565 2.83134 27 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 28 3.43633 0.12982 3.48565 2.83134 28 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 29 3.43633 0.12982 3.48565 2.83134 29 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 30 2.94948 3.59059 0.11685 3.49555 30 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 31 3.43633 0.12982 3.48565 2.83134 31 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 32 3.17556 0.19247 3.23275 2.36594 32 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 33 2.94948 3.59059 0.11685 3.49555 33 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 34 0.14153 3.38306 2.80374 3.28498 34 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 35 2.94948 3.59059 0.11685 3.49555 35 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 36 3.09143 2.59694 3.13948 0.17822 36 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 37 3.09143 2.59694 3.13948 0.17822 37 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 38 3.09143 2.59694 3.13948 0.17822 38 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 39 0.14153 3.38306 2.80374 3.28498 39 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 40 0.14153 3.38306 2.80374 3.28498 40 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 41 2.94948 3.59059 0.11685 3.49555 41 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 42 3.43633 0.12982 3.48565 2.83134 42 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 43 0.14153 3.38306 2.80374 3.28498 43 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 44 3.09143 2.59694 3.13948 0.17822 44 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01303 4.01303 1.46634 0.26236 1.09861 0.40547 45 0.14153 3.38306 2.80374 3.28498 45 - - 1.38629 1.38629 1.38629 1.38629 0.01858 3.99479 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_elevena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:14:33 2012 NSEQ 2 EFFN 2.000000 CKSUM 200537437 STATS LOCAL MSV -7.4731 0.72765 STATS LOCAL VITERBI -8.1305 0.72765 STATS LOCAL FORWARD -3.3552 0.72765 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40083 1.29332 1.32030 1.55025 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_elevenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:14:40 2012 NSEQ 2 EFFN 2.000000 CKSUM 4000050501 STATS LOCAL MSV -7.5058 0.72832 STATS LOCAL VITERBI -8.1521 0.72832 STATS LOCAL FORWARD -3.3219 0.72832 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34045 1.32657 1.37234 1.51698 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.23862 2.84929 2.43386 2.70756 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.15554 1.00938 2.23102 0.88601 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_elevenc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:14:47 2012 NSEQ 6 EFFN 3.295898 CKSUM 3809853014 STATS LOCAL MSV -8.2212 0.71931 STATS LOCAL VITERBI -7.9664 0.71931 STATS LOCAL FORWARD -3.6492 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33326 1.18308 1.24824 1.94465 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 0.00000 * 1 0.14304 3.37165 2.79633 3.27250 1 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 2 2.40035 0.95194 2.47256 0.82336 2 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 3 2.94151 3.57901 0.11812 3.48277 3 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 4 3.42318 0.13140 3.47306 2.82176 4 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 5 2.94151 3.57901 0.11812 3.48277 5 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 6 0.14304 3.37165 2.79633 3.27250 6 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 7 3.42318 0.13140 3.47306 2.82176 7 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 8 3.42318 0.13140 3.47306 2.82176 8 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 9 3.42318 0.13140 3.47306 2.82176 9 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 10 3.42318 0.13140 3.47306 2.82176 10 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 11 0.14304 3.37165 2.79633 3.27250 11 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 12 2.94151 3.57901 0.11812 3.48277 12 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 13 2.94151 3.57901 0.11812 3.48277 13 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 14 0.14304 3.37165 2.79633 3.27250 14 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 15 2.49506 1.35028 2.56376 0.54245 15 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 16 2.94151 3.57901 0.11812 3.48277 16 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 17 2.94151 3.57901 0.11812 3.48277 17 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 18 2.94151 3.57901 0.11812 3.48277 18 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 19 3.42318 0.13140 3.47306 2.82176 19 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 20 2.94151 3.57901 0.11812 3.48277 20 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 21 0.14304 3.37165 2.79633 3.27250 21 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 22 2.94151 3.57901 0.11812 3.48277 22 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 23 0.14304 3.37165 2.79633 3.27250 23 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 24 3.42318 0.13140 3.47306 2.82176 24 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 25 3.42318 0.13140 3.47306 2.82176 25 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 26 0.14304 3.37165 2.79633 3.27250 26 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 27 3.42318 0.13140 3.47306 2.82176 27 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 28 3.42318 0.13140 3.47306 2.82176 28 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 29 3.42318 0.13140 3.47306 2.82176 29 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 30 2.94151 3.57901 0.11812 3.48277 30 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 31 3.42318 0.13140 3.47306 2.82176 31 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 32 3.42318 0.13140 3.47306 2.82176 32 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 33 2.94151 3.57901 0.11812 3.48277 33 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 34 0.14304 3.37165 2.79633 3.27250 34 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 35 2.94151 3.57901 0.11812 3.48277 35 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 36 3.07992 2.58962 3.12841 0.18008 36 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 37 3.07992 2.58962 3.12841 0.18008 37 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 38 3.07992 2.58962 3.12841 0.18008 38 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 39 0.14304 3.37165 2.79633 3.27250 39 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 40 0.14304 3.37165 2.79633 3.27250 40 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 41 2.94151 3.57901 0.11812 3.48277 41 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 42 3.42318 0.13140 3.47306 2.82176 42 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 43 0.14304 3.37165 2.79633 3.27250 43 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 44 3.07992 2.58962 3.12841 0.18008 44 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00659 4.00659 1.46634 0.26236 1.09861 0.40547 45 0.14304 3.37165 2.79633 3.27250 45 - - 1.38629 1.38629 1.38629 1.38629 0.01871 3.98822 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_elevend_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:14:53 2012 NSEQ 2 EFFN 2.000000 CKSUM 3816763266 STATS LOCAL MSV -7.6158 0.72756 STATS LOCAL VITERBI -8.0459 0.72756 STATS LOCAL FORWARD -3.4869 0.72756 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.45842 1.29740 1.26599 1.55024 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_elevene_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:15:00 2012 NSEQ 95 EFFN 3.325348 CKSUM 977022747 STATS LOCAL MSV -8.2525 0.71931 STATS LOCAL VITERBI -7.5496 0.71931 STATS LOCAL FORWARD -4.0188 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.39073 1.34440 1.20697 1.65387 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 0.00000 * 1 0.14178 3.38112 2.80248 3.28286 1 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 2 2.81301 0.33032 2.87951 1.80109 2 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 3 2.94812 3.58862 0.11706 3.49338 3 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 4 0.14178 3.38112 2.80248 3.28286 4 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 5 2.94812 3.58862 0.11706 3.49338 5 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 6 0.14178 3.38112 2.80248 3.28286 6 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 7 3.43409 0.13009 3.48351 2.82971 7 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 8 3.43409 0.13009 3.48351 2.82971 8 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 9 3.08947 2.59569 3.13759 0.17854 9 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 10 3.43409 0.13009 3.48351 2.82971 10 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 11 0.14178 3.38112 2.80248 3.28286 11 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 12 2.94812 3.58862 0.11706 3.49338 12 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 13 2.94812 3.58862 0.11706 3.49338 13 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 14 3.08947 2.59569 3.13759 0.17854 14 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 15 3.43409 0.13009 3.48351 2.82971 15 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 16 0.14178 3.38112 2.80248 3.28286 16 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 17 2.75201 3.20744 0.18382 2.75424 17 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 18 2.94812 3.58862 0.11706 3.49338 18 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 19 3.43409 0.13009 3.48351 2.82971 19 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 20 2.94812 3.58862 0.11706 3.49338 20 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 21 2.94812 3.58862 0.11706 3.49338 21 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 22 2.94812 3.58862 0.11706 3.49338 22 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 23 2.94812 3.58862 0.11706 3.49338 23 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 24 3.43409 0.13009 3.48351 2.82971 24 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 25 3.08947 2.59569 3.13759 0.17854 25 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 26 0.14178 3.38112 2.80248 3.28286 26 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 27 3.43409 0.13009 3.48351 2.82971 27 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 28 3.43409 0.13009 3.48351 2.82971 28 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 29 3.43409 0.13009 3.48351 2.82971 29 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 30 2.94812 3.58862 0.11706 3.49338 30 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 31 3.43409 0.13009 3.48351 2.82971 31 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 32 3.08947 2.59569 3.13759 0.17854 32 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 33 2.94812 3.58862 0.11706 3.49338 33 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 34 0.14178 3.38112 2.80248 3.28286 34 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 35 2.00758 3.04727 0.26875 2.92129 35 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 36 3.08947 2.59569 3.13759 0.17854 36 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 37 3.08947 2.59569 3.13759 0.17854 37 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 38 3.08947 2.59569 3.13759 0.17854 38 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 39 0.14178 3.38112 2.80248 3.28286 39 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 40 0.14178 3.38112 2.80248 3.28286 40 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 41 2.58108 3.40516 0.15757 3.29989 41 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 42 3.43409 0.13009 3.48351 2.82971 42 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 43 0.14178 3.38112 2.80248 3.28286 43 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 44 3.08947 2.59569 3.13759 0.17854 44 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01193 4.01193 1.46634 0.26236 1.09861 0.40547 45 0.14178 3.38112 2.80248 3.28286 45 - - 1.38629 1.38629 1.38629 1.38629 0.01860 3.99367 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_elevenf_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:15:07 2012 NSEQ 4 EFFN 3.152344 CKSUM 36996361 STATS LOCAL MSV -8.2659 0.71931 STATS LOCAL VITERBI -7.8471 0.71931 STATS LOCAL FORWARD -3.9177 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40470 1.27199 1.25449 1.66568 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 0.00000 * 1 0.14954 3.32415 2.76532 3.22056 1 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 2 3.36834 0.13821 3.42049 2.78160 2 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 3 2.90797 3.53050 0.12362 3.42932 3 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 4 3.36834 0.13821 3.42049 2.78160 4 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 5 2.90797 3.53050 0.12362 3.42932 5 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 6 0.14954 3.32415 2.76532 3.22056 6 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 7 3.36834 0.13821 3.42049 2.78160 7 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 8 3.36834 0.13821 3.42049 2.78160 8 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 9 3.36834 0.13821 3.42049 2.78160 9 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 10 3.36834 0.13821 3.42049 2.78160 10 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 11 0.14954 3.32415 2.76532 3.22056 11 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 12 2.90797 3.53050 0.12362 3.42932 12 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 13 2.90797 3.53050 0.12362 3.42932 13 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 14 3.03232 2.55926 3.08260 0.18802 14 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 15 3.36834 0.13821 3.42049 2.78160 15 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 16 0.14954 3.32415 2.76532 3.22056 16 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 17 2.90797 3.53050 0.12362 3.42932 17 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 18 2.90797 3.53050 0.12362 3.42932 18 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 19 3.36834 0.13821 3.42049 2.78160 19 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 20 2.90797 3.53050 0.12362 3.42932 20 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 21 2.90797 3.53050 0.12362 3.42932 21 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 22 2.90797 3.53050 0.12362 3.42932 22 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 23 2.90797 3.53050 0.12362 3.42932 23 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 24 3.03232 2.55926 3.08260 0.18802 24 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 25 3.03232 2.55926 3.08260 0.18802 25 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 26 0.14954 3.32415 2.76532 3.22056 26 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 27 3.36834 0.13821 3.42049 2.78160 27 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 28 3.36834 0.13821 3.42049 2.78160 28 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 29 3.36834 0.13821 3.42049 2.78160 29 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 30 2.90797 3.53050 0.12362 3.42932 30 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 31 3.36834 0.13821 3.42049 2.78160 31 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 32 3.03232 2.55926 3.08260 0.18802 32 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 33 2.90797 3.53050 0.12362 3.42932 33 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 34 0.14954 3.32415 2.76532 3.22056 34 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 35 0.14954 3.32415 2.76532 3.22056 35 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 36 3.03232 2.55926 3.08260 0.18802 36 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 37 3.03232 2.55926 3.08260 0.18802 37 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 38 3.03232 2.55926 3.08260 0.18802 38 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 39 0.14954 3.32415 2.76532 3.22056 39 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 40 0.14954 3.32415 2.76532 3.22056 40 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 41 2.90797 3.53050 0.12362 3.42932 41 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 42 3.36834 0.13821 3.42049 2.78160 42 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 43 0.14954 3.32415 2.76532 3.22056 43 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 44 3.03232 2.55926 3.08260 0.18802 44 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 45 0.14954 3.32415 2.76532 3.22056 45 - - 1.38629 1.38629 1.38629 1.38629 0.01922 3.96126 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_eleveng_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:15:15 2012 NSEQ 344 EFFN 4.233337 CKSUM 1202060389 STATS LOCAL MSV -6.8339 0.71933 STATS LOCAL VITERBI -7.6903 0.71933 STATS LOCAL FORWARD -3.9091 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.44187 1.24554 1.23728 1.68439 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 0.00000 * 1 1.20841 1.13138 1.91937 1.46084 1 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 2 1.97635 0.81204 2.05225 1.24124 2 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 3 2.75429 3.48717 0.13644 3.40216 3 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 4 2.96058 0.21395 3.02381 2.38373 4 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 5 3.07463 3.74265 0.10550 3.49902 5 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 6 0.12189 3.59463 2.85353 3.51840 6 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 7 3.61242 0.12118 3.65360 2.79289 7 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 8 3.72015 0.10061 3.75665 3.03400 8 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 9 3.35125 0.18106 3.40307 2.32989 9 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 10 3.50821 0.13083 3.33406 2.86402 10 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 11 0.13598 3.48607 2.90585 3.17447 11 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 12 3.11636 3.83684 0.09317 3.76856 12 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 13 3.11636 3.83684 0.09317 3.76856 13 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 14 3.29803 2.61097 3.33834 0.15772 14 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 15 3.72015 0.10061 3.75665 3.03400 15 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 16 0.11265 3.63223 2.96414 3.55860 16 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 17 3.07489 3.74322 0.10542 3.50050 17 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 18 2.80390 3.71556 0.11793 3.63713 18 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 19 3.54721 0.13460 3.59123 2.66547 19 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 20 3.11636 3.83684 0.09317 3.76856 20 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 21 2.89306 3.09339 0.14401 3.40010 21 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 22 3.11636 3.83684 0.09317 3.76856 22 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 23 0.27775 3.11797 1.90629 3.00308 23 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 24 2.43721 0.67127 2.57917 1.12177 24 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 25 2.83665 1.95088 2.97818 0.28989 25 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 26 0.11265 3.63223 2.96414 3.55860 26 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 27 3.72015 0.10061 3.75665 3.03400 27 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 28 3.72015 0.10061 3.75665 3.03400 28 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 29 3.72015 0.10061 3.75665 3.03400 29 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 30 3.11636 3.83684 0.09317 3.76856 30 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 31 3.72015 0.10061 3.75665 3.03400 31 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 32 3.24554 2.47422 3.28838 0.17494 32 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 33 3.11636 3.83684 0.09317 3.76856 33 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 34 0.11265 3.63223 2.96414 3.55860 34 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 35 2.13801 3.33567 0.21466 3.22624 35 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 36 3.35066 2.76152 3.38856 0.14158 36 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 37 3.35066 2.76152 3.38856 0.14158 37 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 38 3.35066 2.76152 3.38856 0.14158 38 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 39 0.11265 3.63223 2.96414 3.55860 39 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 40 0.11265 3.63223 2.96414 3.55860 40 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 41 3.11636 3.83684 0.09317 3.76856 41 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 42 3.72015 0.10061 3.75665 3.03400 42 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 43 0.11265 3.63223 2.96414 3.55860 43 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 44 3.35066 2.76152 3.38856 0.14158 44 - - 1.38629 1.38629 1.38629 1.38629 0.03158 4.16408 4.16408 1.46634 0.26236 1.09861 0.40547 45 0.12194 3.59444 2.85299 3.51819 45 - - 1.38629 1.38629 1.38629 1.38629 0.01592 4.14841 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_fifteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:16:00 2012 NSEQ 92 EFFN 3.287720 CKSUM 1199922528 STATS LOCAL MSV -8.2231 0.71932 STATS LOCAL VITERBI -7.6942 0.71932 STATS LOCAL FORWARD -3.9730 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33730 1.39990 1.25149 1.58599 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 0.00000 * 1 0.14339 3.36900 2.79461 3.26960 1 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 2 2.99535 2.39116 3.04673 0.20956 2 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 3 2.93966 3.57632 0.11842 3.47981 3 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 4 0.14339 3.36900 2.79461 3.26960 4 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 5 2.93966 3.57632 0.11842 3.47981 5 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 6 0.14339 3.36900 2.79461 3.26960 6 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 7 3.42013 0.13177 3.47014 2.81954 7 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 8 3.42013 0.13177 3.47014 2.81954 8 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 9 3.07726 2.58792 3.12585 0.18052 9 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 10 3.42013 0.13177 3.47014 2.81954 10 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 11 0.14339 3.36900 2.79461 3.26960 11 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 12 2.79119 3.50709 0.13291 3.40756 12 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 13 2.93966 3.57632 0.11842 3.47981 13 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 14 3.07726 2.58792 3.12585 0.18052 14 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 15 3.42013 0.13177 3.47014 2.81954 15 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 16 0.14339 3.36900 2.79461 3.26960 16 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 17 2.93966 3.57632 0.11842 3.47981 17 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 18 2.72590 3.47419 0.14014 3.37283 18 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 19 3.42013 0.13177 3.47014 2.81954 19 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 20 2.93966 3.57632 0.11842 3.47981 20 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 21 2.93966 3.57632 0.11842 3.47981 21 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 22 2.93966 3.57632 0.11842 3.47981 22 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 23 2.50408 3.35218 0.16935 3.24339 23 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 24 3.07462 0.17317 3.25355 2.60153 24 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 25 3.07726 2.58792 3.12585 0.18052 25 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 26 0.14339 3.36900 2.79461 3.26960 26 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 27 3.42013 0.13177 3.47014 2.81954 27 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 28 3.42013 0.13177 3.47014 2.81954 28 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 29 3.42013 0.13177 3.47014 2.81954 29 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 30 2.93966 3.57632 0.11842 3.47981 30 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 31 3.42013 0.13177 3.47014 2.81954 31 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 32 3.07726 2.58792 3.12585 0.18052 32 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 33 2.93966 3.57632 0.11842 3.47981 33 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 34 0.14339 3.36900 2.79461 3.26960 34 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 35 0.24643 3.04265 2.14536 2.92474 35 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 36 3.07726 2.58792 3.12585 0.18052 36 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 37 3.07726 2.58792 3.12585 0.18052 37 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 38 3.07726 2.58792 3.12585 0.18052 38 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 39 0.14339 3.36900 2.79461 3.26960 39 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 40 0.14339 3.36900 2.79461 3.26960 40 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 41 2.93966 3.57632 0.11842 3.47981 41 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 42 3.42013 0.13177 3.47014 2.81954 42 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 43 0.14339 3.36900 2.79461 3.26960 43 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 44 3.07726 2.58792 3.12585 0.18052 44 - - 1.38629 1.38629 1.38629 1.38629 0.03713 4.00510 4.00510 1.46634 0.26236 1.09861 0.40547 45 0.14339 3.36900 2.79461 3.26960 45 - - 1.38629 1.38629 1.38629 1.38629 0.01874 3.98671 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:11:27 2012 NSEQ 157 EFFN 4.201935 CKSUM 3581575669 STATS LOCAL MSV -6.8273 0.71932 STATS LOCAL VITERBI -7.7042 0.71932 STATS LOCAL FORWARD -3.8808 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.46106 1.23380 1.22309 1.70095 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 0.00000 * 1 1.32983 0.93942 2.06623 1.52344 1 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 2 1.85908 0.77789 2.05547 1.35954 2 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 3 3.06034 3.71507 0.10895 3.44195 3 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 4 2.46516 0.30189 2.72397 2.20751 4 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 5 3.11149 3.82961 0.09379 3.76052 5 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 6 0.11342 3.62471 2.95930 3.55034 6 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 7 3.71171 0.10136 3.74861 3.02806 7 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 8 3.71171 0.10136 3.74861 3.02806 8 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 9 3.32228 0.18765 3.37511 2.29447 9 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 10 3.71171 0.10136 3.74861 3.02806 10 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 11 0.11342 3.62471 2.95930 3.55034 11 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 12 3.11149 3.82961 0.09379 3.76052 12 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 13 3.11149 3.82961 0.09379 3.76052 13 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 14 3.25469 2.51402 3.29698 0.17023 14 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 15 3.71171 0.10136 3.74861 3.02806 15 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 16 0.11342 3.62471 2.95930 3.55034 16 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 17 2.75306 3.68610 0.12329 3.60497 17 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 18 2.89640 3.54949 0.13581 3.14576 18 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 19 3.54044 0.13509 3.58471 2.66477 19 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 20 3.11149 3.82961 0.09379 3.76052 20 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 21 2.97710 3.12600 0.13567 3.44093 21 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 22 3.11149 3.82961 0.09379 3.76052 22 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 23 0.60645 2.70802 1.16635 2.56984 23 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 24 2.55747 0.37986 2.78908 1.73123 24 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 25 3.11326 2.18476 3.16216 0.22226 25 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 26 0.11342 3.62471 2.95930 3.55034 26 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 27 3.71171 0.10136 3.74861 3.02806 27 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 28 3.71171 0.10136 3.74861 3.02806 28 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 29 3.71171 0.10136 3.74861 3.02806 29 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 30 3.11149 3.82961 0.09379 3.76052 30 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 31 3.44260 0.13868 3.16422 2.89555 31 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 32 3.11580 2.67240 2.84404 0.18828 32 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 33 3.11149 3.82961 0.09379 3.76052 33 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 34 0.11342 3.62471 2.95930 3.55034 34 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 35 2.41235 3.50416 0.16583 3.40734 35 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 36 3.34261 2.75638 3.38083 0.14258 36 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 37 3.34261 2.75638 3.38083 0.14258 37 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 38 3.34261 2.75638 3.38083 0.14258 38 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 39 0.11342 3.62471 2.95930 3.55034 39 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 40 0.11342 3.62471 2.95930 3.55034 40 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 41 3.11149 3.82961 0.09379 3.76052 41 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 42 3.71171 0.10136 3.74861 3.02806 42 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 43 0.11342 3.62471 2.95930 3.55034 43 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 44 3.34261 2.75638 3.38083 0.14258 44 - - 1.38629 1.38629 1.38629 1.38629 0.03174 4.15918 4.15918 1.46634 0.26236 1.09861 0.40547 45 0.11342 3.62471 2.95930 3.55034 45 - - 1.38629 1.38629 1.38629 1.38629 0.01600 4.14344 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:11:19 2012 NSEQ 19 EFFN 3.363037 CKSUM 3416317619 STATS LOCAL MSV -8.2126 0.71933 STATS LOCAL VITERBI -7.7490 0.71933 STATS LOCAL FORWARD -3.7875 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.39475 1.27161 1.18437 1.79704 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 0.00000 * 1 0.14021 3.39310 2.81025 3.29598 1 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 2 3.10158 2.60339 3.14924 0.17660 2 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 3 2.95646 3.60076 0.11575 3.50679 3 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 4 3.44789 0.12846 3.49672 2.83975 4 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 5 2.95646 3.60076 0.11575 3.50679 5 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 6 0.14021 3.39310 2.81025 3.29598 6 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 7 3.44789 0.12846 3.49672 2.83975 7 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 8 3.44789 0.12846 3.49672 2.83975 8 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 9 3.44789 0.12846 3.49672 2.83975 9 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 10 3.44789 0.12846 3.49672 2.83975 10 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 11 0.14021 3.39310 2.81025 3.29598 11 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 12 2.95646 3.60076 0.11575 3.50679 12 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 13 2.95646 3.60076 0.11575 3.50679 13 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 14 0.14021 3.39310 2.81025 3.29598 14 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 15 2.83330 2.01058 2.89091 0.28536 15 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 16 2.95646 3.60076 0.11575 3.50679 16 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 17 2.95646 3.60076 0.11575 3.50679 17 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 18 2.95646 3.60076 0.11575 3.50679 18 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 19 3.44789 0.12846 3.49672 2.83975 19 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 20 2.95646 3.60076 0.11575 3.50679 20 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 21 0.14021 3.39310 2.81025 3.29598 21 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 22 2.95646 3.60076 0.11575 3.50679 22 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 23 2.95646 3.60076 0.11575 3.50679 23 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 24 2.36268 0.48681 2.04280 1.82275 24 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 25 3.44789 0.12846 3.49672 2.83975 25 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 26 0.14021 3.39310 2.81025 3.29598 26 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 27 3.44789 0.12846 3.49672 2.83975 27 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 28 3.44789 0.12846 3.49672 2.83975 28 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 29 3.44789 0.12846 3.49672 2.83975 29 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 30 2.95646 3.60076 0.11575 3.50679 30 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 31 3.44789 0.12846 3.49672 2.83975 31 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 32 2.44542 1.16167 2.51596 0.65477 32 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 33 2.95646 3.60076 0.11575 3.50679 33 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 34 0.14021 3.39310 2.81025 3.29598 34 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 35 2.95646 3.60076 0.11575 3.50679 35 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 36 3.10158 2.60339 3.14924 0.17660 36 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 37 3.10158 2.60339 3.14924 0.17660 37 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 38 3.10158 2.60339 3.14924 0.17660 38 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 39 0.14021 3.39310 2.81025 3.29598 39 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 40 0.14021 3.39310 2.81025 3.29598 40 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 41 2.95646 3.60076 0.11575 3.50679 41 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 42 3.44789 0.12846 3.49672 2.83975 42 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 43 0.14021 3.39310 2.81025 3.29598 43 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 44 3.10158 2.60339 3.14924 0.17660 44 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01873 4.01873 1.46634 0.26236 1.09861 0.40547 45 0.14021 3.39310 2.81025 3.29598 45 - - 1.38629 1.38629 1.38629 1.38629 0.01847 4.00059 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_fourteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:15:51 2012 NSEQ 140 EFFN 4.627075 CKSUM 3011099649 STATS LOCAL MSV -6.6527 0.71932 STATS LOCAL VITERBI -7.6496 0.71932 STATS LOCAL FORWARD -3.9115 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.43118 1.23274 1.27380 1.66224 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 0.00000 * 1 1.37717 1.60803 2.10525 0.85423 1 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 2 2.72518 0.45872 2.70806 1.44517 2 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 3 2.39521 1.56755 0.49190 2.42108 3 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 4 3.18104 0.14395 3.52007 2.76579 4 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 5 3.17322 3.92093 0.08634 3.86202 5 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 6 0.10403 3.72055 3.02131 3.65575 6 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 7 3.73295 0.10823 3.76892 2.88994 7 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 8 3.70997 0.11268 3.74707 2.83880 8 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 9 3.46625 0.16606 3.51430 2.38592 9 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 10 3.72711 0.10935 3.76336 2.87672 10 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 11 0.10403 3.72055 3.02131 3.65575 11 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 12 1.53211 2.99966 0.38944 2.87027 12 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 13 3.17322 3.92093 0.08634 3.86202 13 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 14 3.44646 2.82292 3.48058 0.13020 14 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 15 3.81848 0.09227 3.85031 3.10311 15 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 16 0.10403 3.72055 3.02131 3.65575 16 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 17 3.17322 3.92093 0.08634 3.86202 17 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 18 2.96577 3.85342 0.10022 3.78836 18 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 19 2.81556 0.45604 2.88277 1.38486 19 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 20 3.17322 3.92093 0.08634 3.86202 20 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 21 3.17322 3.92093 0.08634 3.86202 21 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 22 3.17322 3.92093 0.08634 3.86202 22 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 23 0.29522 3.14036 1.80891 3.02547 23 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 24 2.36283 0.62456 2.36537 1.28577 24 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 25 3.33089 2.48707 3.37093 0.16638 25 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 26 0.10403 3.72055 3.02131 3.65575 26 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 27 3.75492 0.10405 3.78981 2.94093 27 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 28 3.81848 0.09227 3.85031 3.10311 28 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 29 3.81848 0.09227 3.85031 3.10311 29 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 30 3.17322 3.92093 0.08634 3.86202 30 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 31 3.81848 0.09227 3.85031 3.10311 31 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 32 3.44646 2.82292 3.48058 0.13020 32 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 33 3.17322 3.92093 0.08634 3.86202 33 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 34 0.10403 3.72055 3.02131 3.65575 34 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 35 2.00667 3.32757 0.23624 3.21665 35 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 36 2.82308 1.45609 2.88511 0.42835 36 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 37 3.44646 2.82292 3.48058 0.13020 37 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 38 3.44646 2.82292 3.48058 0.13020 38 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 39 0.10403 3.72055 3.02131 3.65575 39 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 40 0.10403 3.72055 3.02131 3.65575 40 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 41 3.17322 3.92093 0.08634 3.86202 41 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 42 3.81848 0.09227 3.85031 3.10311 42 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 43 0.10403 3.72055 3.02131 3.65575 43 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 44 3.44646 2.82292 3.48058 0.13020 44 - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.22348 4.22348 1.46634 0.26236 1.09861 0.40547 45 0.10403 3.72055 3.02131 3.65575 45 - - 1.38629 1.38629 1.38629 1.38629 0.01498 4.20873 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_ninea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:12:04 2012 NSEQ 2 EFFN 2.000000 CKSUM 3826483507 STATS LOCAL MSV -7.6397 0.72761 STATS LOCAL VITERBI -8.2800 0.72761 STATS LOCAL FORWARD -3.2833 0.72761 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34637 1.24605 1.37655 1.61078 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.23862 2.84929 2.43386 2.70756 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_nineb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:12:11 2012 NSEQ 18 EFFN 3.133301 CKSUM 1046412576 STATS LOCAL MSV -8.2028 0.71931 STATS LOCAL VITERBI -7.6692 0.71931 STATS LOCAL FORWARD -4.0356 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.47236 1.33687 1.14083 1.66921 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 0.00000 * 1 0.15045 3.31767 2.76107 3.21348 1 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 2 3.36085 0.13917 3.41331 2.77609 2 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 3 2.90335 3.52386 0.12440 3.42200 3 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 4 2.90335 3.52386 0.12440 3.42200 4 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 5 2.90335 3.52386 0.12440 3.42200 5 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 6 0.15045 3.31767 2.76107 3.21348 6 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 7 3.36085 0.13917 3.41331 2.77609 7 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 8 3.36085 0.13917 3.41331 2.77609 8 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 9 3.02586 2.55514 3.07640 0.18913 9 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 10 3.36085 0.13917 3.41331 2.77609 10 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 11 0.15045 3.31767 2.76107 3.21348 11 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 12 2.90335 3.52386 0.12440 3.42200 12 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 13 2.90335 3.52386 0.12440 3.42200 13 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 14 3.02586 2.55514 3.07640 0.18913 14 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 15 3.36085 0.13917 3.41331 2.77609 15 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 16 0.15045 3.31767 2.76107 3.21348 16 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 17 2.90335 3.52386 0.12440 3.42200 17 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 18 2.90335 3.52386 0.12440 3.42200 18 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 19 3.36085 0.13917 3.41331 2.77609 19 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 20 2.90335 3.52386 0.12440 3.42200 20 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 21 2.90335 3.52386 0.12440 3.42200 21 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 22 2.90335 3.52386 0.12440 3.42200 22 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 23 2.90335 3.52386 0.12440 3.42200 23 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 24 3.36085 0.13917 3.41331 2.77609 24 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 25 3.02586 2.55514 3.07640 0.18913 25 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 26 0.15045 3.31767 2.76107 3.21348 26 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 27 3.36085 0.13917 3.41331 2.77609 27 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 28 3.36085 0.13917 3.41331 2.77609 28 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 29 3.36085 0.13917 3.41331 2.77609 29 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 30 2.90335 3.52386 0.12440 3.42200 30 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 31 3.36085 0.13917 3.41331 2.77609 31 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 32 3.02586 2.55514 3.07640 0.18913 32 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 33 2.90335 3.52386 0.12440 3.42200 33 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 34 0.15045 3.31767 2.76107 3.21348 34 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 35 2.90335 3.52386 0.12440 3.42200 35 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 36 3.02586 2.55514 3.07640 0.18913 36 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 37 3.02586 2.55514 3.07640 0.18913 37 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 38 3.02586 2.55514 3.07640 0.18913 38 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 39 0.15045 3.31767 2.76107 3.21348 39 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 40 0.15045 3.31767 2.76107 3.21348 40 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 41 2.90335 3.52386 0.12440 3.42200 41 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 42 3.36085 0.13917 3.41331 2.77609 42 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 43 0.15045 3.31767 2.76107 3.21348 43 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 44 3.02586 2.55514 3.07640 0.18913 44 - - 1.38629 1.38629 1.38629 1.38629 0.03822 3.97656 3.97656 1.46634 0.26236 1.09861 0.40547 45 0.15045 3.31767 2.76107 3.21348 45 - - 1.38629 1.38629 1.38629 1.38629 0.01929 3.95763 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_ninec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:12:17 2012 NSEQ 28 EFFN 3.195801 CKSUM 3247683125 STATS LOCAL MSV -8.1990 0.71931 STATS LOCAL VITERBI -7.6999 0.71931 STATS LOCAL FORWARD -3.8686 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.48734 1.27164 1.19063 1.66271 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 0.00000 * 1 0.31838 2.86951 1.88725 2.74175 1 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 2 3.04692 2.56858 3.09666 0.18555 2 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 3 2.91836 3.54548 0.12189 3.44581 3 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 4 3.38523 0.13607 3.43670 2.79401 4 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 5 2.91836 3.54548 0.12189 3.44581 5 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 6 0.14750 3.33877 2.77489 3.23653 6 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 7 3.38523 0.13607 3.43670 2.79401 7 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 8 3.38523 0.13607 3.43670 2.79401 8 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 9 3.38523 0.13607 3.43670 2.79401 9 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 10 3.38523 0.13607 3.43670 2.79401 10 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 11 0.14750 3.33877 2.77489 3.23653 11 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 12 2.91836 3.54548 0.12189 3.44581 12 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 13 2.91836 3.54548 0.12189 3.44581 13 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 14 3.04692 2.56858 3.09666 0.18555 14 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 15 3.38523 0.13607 3.43670 2.79401 15 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 16 0.14750 3.33877 2.77489 3.23653 16 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 17 2.91836 3.54548 0.12189 3.44581 17 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 18 2.91836 3.54548 0.12189 3.44581 18 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 19 3.38523 0.13607 3.43670 2.79401 19 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 20 2.91836 3.54548 0.12189 3.44581 20 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 21 2.91836 3.54548 0.12189 3.44581 21 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 22 2.91836 3.54548 0.12189 3.44581 22 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 23 2.91836 3.54548 0.12189 3.44581 23 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 24 3.38523 0.13607 3.43670 2.79401 24 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 25 3.04692 2.56858 3.09666 0.18555 25 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 26 0.14750 3.33877 2.77489 3.23653 26 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 27 3.38523 0.13607 3.43670 2.79401 27 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 28 3.38523 0.13607 3.43670 2.79401 28 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 29 3.38523 0.13607 3.43670 2.79401 29 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 30 2.91836 3.54548 0.12189 3.44581 30 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 31 3.38523 0.13607 3.43670 2.79401 31 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 32 3.04692 2.56858 3.09666 0.18555 32 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 33 2.91836 3.54548 0.12189 3.44581 33 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 34 0.14750 3.33877 2.77489 3.23653 34 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 35 2.91836 3.54548 0.12189 3.44581 35 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 36 3.04692 2.56858 3.09666 0.18555 36 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 37 3.04692 2.56858 3.09666 0.18555 37 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 38 3.04692 2.56858 3.09666 0.18555 38 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 39 0.14750 3.33877 2.77489 3.23653 39 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 40 0.14750 3.33877 2.77489 3.23653 40 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 41 2.91836 3.54548 0.12189 3.44581 41 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 42 3.38523 0.13607 3.43670 2.79401 42 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 43 0.14750 3.33877 2.77489 3.23653 43 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 44 3.04692 2.56858 3.09666 0.18555 44 - - 1.38629 1.38629 1.38629 1.38629 0.03777 3.98821 3.98821 1.46634 0.26236 1.09861 0.40547 45 0.14750 3.33877 2.77489 3.23653 45 - - 1.38629 1.38629 1.38629 1.38629 0.01906 3.96950 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_nined_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:12:22 2012 NSEQ 2 EFFN 2.000000 CKSUM 1933484248 STATS LOCAL MSV -7.3520 0.72782 STATS LOCAL VITERBI -8.2066 0.72782 STATS LOCAL FORWARD -3.1788 0.72782 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.29226 1.29514 1.43530 1.54437 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.23862 2.84929 2.43386 2.70756 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.57915 2.25909 2.64442 0.28946 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.81865 0.23582 2.88868 2.35662 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_ninee_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:12:27 2012 NSEQ 4 EFFN 3.152344 CKSUM 2253024799 STATS LOCAL MSV -8.1865 0.71933 STATS LOCAL VITERBI -7.7862 0.71933 STATS LOCAL FORWARD -3.8179 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33648 1.33706 1.25226 1.66730 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 0.00000 * 1 0.14954 3.32415 2.76532 3.22056 1 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 2 0.14954 3.32415 2.76532 3.22056 2 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 3 2.90797 3.53050 0.12362 3.42932 3 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 4 3.03232 2.55926 3.08260 0.18802 4 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 5 2.90797 3.53050 0.12362 3.42932 5 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 6 0.14954 3.32415 2.76532 3.22056 6 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 7 3.36834 0.13821 3.42049 2.78160 7 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 8 3.36834 0.13821 3.42049 2.78160 8 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 9 3.36834 0.13821 3.42049 2.78160 9 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 10 3.36834 0.13821 3.42049 2.78160 10 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 11 0.14954 3.32415 2.76532 3.22056 11 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 12 2.90797 3.53050 0.12362 3.42932 12 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 13 2.90797 3.53050 0.12362 3.42932 13 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 14 3.03232 2.55926 3.08260 0.18802 14 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 15 3.36834 0.13821 3.42049 2.78160 15 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 16 0.14954 3.32415 2.76532 3.22056 16 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 17 2.90797 3.53050 0.12362 3.42932 17 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 18 2.90797 3.53050 0.12362 3.42932 18 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 19 3.36834 0.13821 3.42049 2.78160 19 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 20 2.90797 3.53050 0.12362 3.42932 20 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 21 2.90797 3.53050 0.12362 3.42932 21 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 22 2.90797 3.53050 0.12362 3.42932 22 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 23 0.14954 3.32415 2.76532 3.22056 23 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 24 3.36834 0.13821 3.42049 2.78160 24 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 25 3.03232 2.55926 3.08260 0.18802 25 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 26 0.14954 3.32415 2.76532 3.22056 26 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 27 3.36834 0.13821 3.42049 2.78160 27 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 28 3.36834 0.13821 3.42049 2.78160 28 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 29 3.36834 0.13821 3.42049 2.78160 29 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 30 2.90797 3.53050 0.12362 3.42932 30 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 31 3.36834 0.13821 3.42049 2.78160 31 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 32 3.03232 2.55926 3.08260 0.18802 32 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 33 2.90797 3.53050 0.12362 3.42932 33 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 34 0.14954 3.32415 2.76532 3.22056 34 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 35 2.90797 3.53050 0.12362 3.42932 35 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 36 3.03232 2.55926 3.08260 0.18802 36 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 37 3.03232 2.55926 3.08260 0.18802 37 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 38 3.03232 2.55926 3.08260 0.18802 38 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 39 0.14954 3.32415 2.76532 3.22056 39 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 40 0.14954 3.32415 2.76532 3.22056 40 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 41 2.90797 3.53050 0.12362 3.42932 41 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 42 3.36834 0.13821 3.42049 2.78160 42 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 43 0.14954 3.32415 2.76532 3.22056 43 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 44 3.03232 2.55926 3.08260 0.18802 44 - - 1.38629 1.38629 1.38629 1.38629 0.03808 3.98012 3.98012 1.46634 0.26236 1.09861 0.40547 45 0.14954 3.32415 2.76532 3.22056 45 - - 1.38629 1.38629 1.38629 1.38629 0.01922 3.96126 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_ninef_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:12:35 2012 NSEQ 11 EFFN 3.182373 CKSUM 2259734906 STATS LOCAL MSV -8.2662 0.71933 STATS LOCAL VITERBI -7.7504 0.71933 STATS LOCAL FORWARD -3.8026 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.41753 1.21361 1.24880 1.75034 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 0.00000 * 1 0.14812 3.33427 2.77195 3.23162 1 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 2 3.38004 0.13672 3.43172 2.79020 2 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 3 2.91517 3.54088 0.12242 3.44074 3 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 4 3.38004 0.13672 3.43172 2.79020 4 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 5 2.91517 3.54088 0.12242 3.44074 5 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 6 0.14812 3.33427 2.77195 3.23162 6 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 7 3.38004 0.13672 3.43172 2.79020 7 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 8 3.38004 0.13672 3.43172 2.79020 8 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 9 3.38004 0.13672 3.43172 2.79020 9 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 10 3.38004 0.13672 3.43172 2.79020 10 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 11 0.14812 3.33427 2.77195 3.23162 11 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 12 2.91517 3.54088 0.12242 3.44074 12 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 13 2.91517 3.54088 0.12242 3.44074 13 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 14 3.04242 2.56572 3.09233 0.18630 14 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 15 3.38004 0.13672 3.43172 2.79020 15 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 16 0.14812 3.33427 2.77195 3.23162 16 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 17 0.32282 2.85901 1.87473 2.73070 17 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 18 2.91517 3.54088 0.12242 3.44074 18 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 19 3.38004 0.13672 3.43172 2.79020 19 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 20 2.91517 3.54088 0.12242 3.44074 20 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 21 2.91517 3.54088 0.12242 3.44074 21 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 22 2.91517 3.54088 0.12242 3.44074 22 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 23 2.91517 3.54088 0.12242 3.44074 23 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 24 3.38004 0.13672 3.43172 2.79020 24 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 25 3.04242 2.56572 3.09233 0.18630 25 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 26 0.14812 3.33427 2.77195 3.23162 26 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 27 3.38004 0.13672 3.43172 2.79020 27 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 28 3.38004 0.13672 3.43172 2.79020 28 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 29 3.38004 0.13672 3.43172 2.79020 29 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 30 2.91517 3.54088 0.12242 3.44074 30 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 31 3.38004 0.13672 3.43172 2.79020 31 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 32 3.04242 2.56572 3.09233 0.18630 32 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 33 2.91517 3.54088 0.12242 3.44074 33 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 34 0.14812 3.33427 2.77195 3.23162 34 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 35 2.91517 3.54088 0.12242 3.44074 35 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 36 3.04242 2.56572 3.09233 0.18630 36 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 37 3.04242 2.56572 3.09233 0.18630 37 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 38 3.04242 2.56572 3.09233 0.18630 38 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 39 0.14812 3.33427 2.77195 3.23162 39 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 40 0.14812 3.33427 2.77195 3.23162 40 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 41 2.91517 3.54088 0.12242 3.44074 41 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 42 3.38004 0.13672 3.43172 2.79020 42 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 43 0.14812 3.33427 2.77195 3.23162 43 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 44 3.04242 2.56572 3.09233 0.18630 44 - - 1.38629 1.38629 1.38629 1.38629 0.03787 3.98571 3.98571 1.46634 0.26236 1.09861 0.40547 45 0.14812 3.33427 2.77195 3.23162 45 - - 1.38629 1.38629 1.38629 1.38629 0.01911 3.96696 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_nineg_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:12:40 2012 NSEQ 3 EFFN 3.000000 CKSUM 3180213690 STATS LOCAL MSV -7.9951 0.71983 STATS LOCAL VITERBI -7.7998 0.71983 STATS LOCAL FORWARD -3.7258 0.71983 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33644 1.34183 1.19530 1.75307 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.15719 3.27118 2.73043 3.16274 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 0.15719 3.27118 2.73043 3.16274 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.86982 3.47591 0.13017 3.36931 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.86982 3.47591 0.13017 3.36931 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.86982 3.47591 0.13017 3.36931 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.30705 0.14631 3.36166 2.73626 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.15719 3.27118 2.73043 3.16274 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.86982 3.47591 0.13017 3.36931 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.30705 0.14631 3.36166 2.73626 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.86982 3.47591 0.13017 3.36931 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 0.15719 3.27118 2.73043 3.16274 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.97980 2.52563 3.03204 0.19727 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.15719 3.27118 2.73043 3.16274 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.86982 3.47591 0.13017 3.36931 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.97980 2.52563 3.03204 0.19727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.97980 2.52563 3.03204 0.19727 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.86982 3.47591 0.13017 3.36931 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.30705 0.14631 3.36166 2.73626 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 0.15719 3.27118 2.73043 3.16274 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_nineh_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:12:45 2012 NSEQ 5 EFFN 3.168945 CKSUM 177826028 STATS LOCAL MSV -8.0764 0.71931 STATS LOCAL VITERBI -7.7650 0.71931 STATS LOCAL FORWARD -3.8765 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.47768 1.27000 1.25567 1.57931 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 0.00000 * 1 3.03791 2.56284 3.08799 0.18707 1 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 2 3.03791 2.56284 3.08799 0.18707 2 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 3 2.91196 3.53626 0.12295 3.43565 3 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 4 3.37482 0.13738 3.42671 2.78637 4 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 5 2.91196 3.53626 0.12295 3.43565 5 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 6 0.14875 3.32976 2.76899 3.22669 6 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 7 3.37482 0.13738 3.42671 2.78637 7 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 8 3.37482 0.13738 3.42671 2.78637 8 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 9 3.37482 0.13738 3.42671 2.78637 9 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 10 3.37482 0.13738 3.42671 2.78637 10 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 11 0.14875 3.32976 2.76899 3.22669 11 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 12 2.91196 3.53626 0.12295 3.43565 12 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 13 2.91196 3.53626 0.12295 3.43565 13 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 14 3.03791 2.56284 3.08799 0.18707 14 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 15 3.37482 0.13738 3.42671 2.78637 15 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 16 0.14875 3.32976 2.76899 3.22669 16 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 17 2.91196 3.53626 0.12295 3.43565 17 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 18 2.91196 3.53626 0.12295 3.43565 18 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 19 3.37482 0.13738 3.42671 2.78637 19 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 20 2.91196 3.53626 0.12295 3.43565 20 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 21 2.91196 3.53626 0.12295 3.43565 21 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 22 2.91196 3.53626 0.12295 3.43565 22 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 23 0.14875 3.32976 2.76899 3.22669 23 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 24 3.03791 2.56284 3.08799 0.18707 24 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 25 3.37482 0.13738 3.42671 2.78637 25 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 26 0.14875 3.32976 2.76899 3.22669 26 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 27 3.37482 0.13738 3.42671 2.78637 27 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 28 3.37482 0.13738 3.42671 2.78637 28 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 29 3.37482 0.13738 3.42671 2.78637 29 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 30 2.91196 3.53626 0.12295 3.43565 30 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 31 3.37482 0.13738 3.42671 2.78637 31 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 32 3.03791 2.56284 3.08799 0.18707 32 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 33 2.91196 3.53626 0.12295 3.43565 33 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 34 0.14875 3.32976 2.76899 3.22669 34 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 35 2.91196 3.53626 0.12295 3.43565 35 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 36 3.03791 2.56284 3.08799 0.18707 36 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 37 3.03791 2.56284 3.08799 0.18707 37 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 38 3.03791 2.56284 3.08799 0.18707 38 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 39 0.14875 3.32976 2.76899 3.22669 39 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 40 0.14875 3.32976 2.76899 3.22669 40 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 41 2.91196 3.53626 0.12295 3.43565 41 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 42 3.37482 0.13738 3.42671 2.78637 42 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 43 0.14875 3.32976 2.76899 3.22669 43 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 44 3.03791 2.56284 3.08799 0.18707 44 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 45 0.14875 3.32976 2.76899 3.22669 45 - - 1.38629 1.38629 1.38629 1.38629 0.01916 3.96442 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_ninei_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:12:50 2012 NSEQ 7 EFFN 3.120605 CKSUM 2734349611 STATS LOCAL MSV -8.1916 0.71933 STATS LOCAL VITERBI -7.7361 0.71933 STATS LOCAL FORWARD -3.7364 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.47980 1.15880 1.25782 1.74766 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 0.00000 * 1 3.35584 0.13982 3.40850 2.77239 1 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 2 3.35584 0.13982 3.40850 2.77239 2 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 3 2.90025 3.51940 0.12492 3.41710 3 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 4 3.02155 2.55238 3.07224 0.18988 4 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 5 2.90025 3.51940 0.12492 3.41710 5 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 6 0.15106 3.31333 2.75822 3.20874 6 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 7 3.35584 0.13982 3.40850 2.77239 7 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 8 3.35584 0.13982 3.40850 2.77239 8 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 9 3.35584 0.13982 3.40850 2.77239 9 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 10 3.35584 0.13982 3.40850 2.77239 10 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 11 0.15106 3.31333 2.75822 3.20874 11 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 12 2.90025 3.51940 0.12492 3.41710 12 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 13 2.90025 3.51940 0.12492 3.41710 13 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 14 3.02155 2.55238 3.07224 0.18988 14 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 15 3.35584 0.13982 3.40850 2.77239 15 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 16 0.15106 3.31333 2.75822 3.20874 16 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 17 2.90025 3.51940 0.12492 3.41710 17 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 18 2.90025 3.51940 0.12492 3.41710 18 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 19 3.35584 0.13982 3.40850 2.77239 19 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 20 2.90025 3.51940 0.12492 3.41710 20 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 21 2.90025 3.51940 0.12492 3.41710 21 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 22 2.90025 3.51940 0.12492 3.41710 22 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 23 0.15106 3.31333 2.75822 3.20874 23 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 24 3.35584 0.13982 3.40850 2.77239 24 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 25 3.35584 0.13982 3.40850 2.77239 25 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 26 0.15106 3.31333 2.75822 3.20874 26 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 27 3.35584 0.13982 3.40850 2.77239 27 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 28 3.35584 0.13982 3.40850 2.77239 28 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 29 3.35584 0.13982 3.40850 2.77239 29 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 30 2.90025 3.51940 0.12492 3.41710 30 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 31 3.35584 0.13982 3.40850 2.77239 31 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 32 3.02155 2.55238 3.07224 0.18988 32 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 33 2.90025 3.51940 0.12492 3.41710 33 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 34 0.15106 3.31333 2.75822 3.20874 34 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 35 2.90025 3.51940 0.12492 3.41710 35 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 36 3.02155 2.55238 3.07224 0.18988 36 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 37 3.02155 2.55238 3.07224 0.18988 37 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 38 3.02155 2.55238 3.07224 0.18988 38 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 39 0.15106 3.31333 2.75822 3.20874 39 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 40 0.15106 3.31333 2.75822 3.20874 40 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 41 2.90025 3.51940 0.12492 3.41710 41 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 42 3.35584 0.13982 3.40850 2.77239 42 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 43 0.15106 3.31333 2.75822 3.20874 43 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 44 3.02155 2.55238 3.07224 0.18988 44 - - 1.38629 1.38629 1.38629 1.38629 0.03831 3.97417 3.97417 1.46634 0.26236 1.09861 0.40547 45 0.15106 3.31333 2.75822 3.20874 45 - - 1.38629 1.38629 1.38629 1.38629 0.01934 3.95520 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_ninej_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:12:54 2012 NSEQ 4 EFFN 3.136719 CKSUM 1347985792 STATS LOCAL MSV -8.1185 0.71931 STATS LOCAL VITERBI -7.6324 0.71931 STATS LOCAL FORWARD -3.7644 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.41001 1.15750 1.31861 1.74823 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 0.00000 * 1 3.36220 0.13900 3.41461 2.77708 1 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 2 3.36220 0.13900 3.41461 2.77708 2 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 3 2.90418 3.52506 0.12426 3.42332 3 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 4 3.36220 0.13900 3.41461 2.77708 4 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 5 2.90418 3.52506 0.12426 3.42332 5 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 6 0.15028 3.31884 2.76184 3.21476 6 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 7 3.36220 0.13900 3.41461 2.77708 7 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 8 3.36220 0.13900 3.41461 2.77708 8 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 9 3.36220 0.13900 3.41461 2.77708 9 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 10 3.36220 0.13900 3.41461 2.77708 10 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 11 0.15028 3.31884 2.76184 3.21476 11 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 12 2.90418 3.52506 0.12426 3.42332 12 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 13 2.90418 3.52506 0.12426 3.42332 13 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 14 3.02702 2.55588 3.07751 0.18893 14 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 15 3.36220 0.13900 3.41461 2.77708 15 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 16 0.15028 3.31884 2.76184 3.21476 16 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 17 2.90418 3.52506 0.12426 3.42332 17 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 18 0.15028 3.31884 2.76184 3.21476 18 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 19 3.36220 0.13900 3.41461 2.77708 19 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 20 2.90418 3.52506 0.12426 3.42332 20 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 21 2.90418 3.52506 0.12426 3.42332 21 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 22 2.90418 3.52506 0.12426 3.42332 22 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 23 0.15028 3.31884 2.76184 3.21476 23 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 24 3.36220 0.13900 3.41461 2.77708 24 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 25 3.02702 2.55588 3.07751 0.18893 25 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 26 0.15028 3.31884 2.76184 3.21476 26 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 27 3.36220 0.13900 3.41461 2.77708 27 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 28 3.36220 0.13900 3.41461 2.77708 28 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 29 3.36220 0.13900 3.41461 2.77708 29 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 30 2.90418 3.52506 0.12426 3.42332 30 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 31 3.36220 0.13900 3.41461 2.77708 31 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 32 3.02702 2.55588 3.07751 0.18893 32 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 33 2.90418 3.52506 0.12426 3.42332 33 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 34 0.15028 3.31884 2.76184 3.21476 34 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 35 2.90418 3.52506 0.12426 3.42332 35 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 36 3.02702 2.55588 3.07751 0.18893 36 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 37 3.02702 2.55588 3.07751 0.18893 37 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 38 3.02702 2.55588 3.07751 0.18893 38 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 39 0.15028 3.31884 2.76184 3.21476 39 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 40 0.15028 3.31884 2.76184 3.21476 40 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 41 2.90418 3.52506 0.12426 3.42332 41 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 42 3.36220 0.13900 3.41461 2.77708 42 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 43 0.15028 3.31884 2.76184 3.21476 43 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 44 3.02702 2.55588 3.07751 0.18893 44 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 45 0.15028 3.31884 2.76184 3.21476 45 - - 1.38629 1.38629 1.38629 1.38629 0.01928 3.95828 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_ninek_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:13:05 2012 NSEQ 9 EFFN 3.265137 CKSUM 2766384668 STATS LOCAL MSV -8.1227 0.71931 STATS LOCAL VITERBI -7.6635 0.71931 STATS LOCAL FORWARD -3.7620 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.50333 1.26598 1.24180 1.57607 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 0.00000 * 1 3.06987 2.58322 3.11874 0.18173 1 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 2 3.06987 2.58322 3.11874 0.18173 2 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 3 2.93451 3.56885 0.11925 3.47156 3 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 4 3.41166 0.13280 3.46202 2.81336 4 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 5 2.93451 3.56885 0.11925 3.47156 5 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 6 0.14438 3.36166 2.78983 3.26157 6 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 7 3.41166 0.13280 3.46202 2.81336 7 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 8 3.41166 0.13280 3.46202 2.81336 8 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 9 3.41166 0.13280 3.46202 2.81336 9 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 10 3.41166 0.13280 3.46202 2.81336 10 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 11 0.14438 3.36166 2.78983 3.26157 11 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 12 2.93451 3.56885 0.11925 3.47156 12 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 13 2.93451 3.56885 0.11925 3.47156 13 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 14 3.06987 2.58322 3.11874 0.18173 14 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 15 3.41166 0.13280 3.46202 2.81336 15 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 16 0.14438 3.36166 2.78983 3.26157 16 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 17 2.93451 3.56885 0.11925 3.47156 17 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 18 2.93451 3.56885 0.11925 3.47156 18 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 19 3.41166 0.13280 3.46202 2.81336 19 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 20 0.52310 2.61815 1.38438 2.47807 20 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 21 2.93451 3.56885 0.11925 3.47156 21 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 22 2.93451 3.56885 0.11925 3.47156 22 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 23 2.93451 3.56885 0.11925 3.47156 23 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 24 3.41166 0.13280 3.46202 2.81336 24 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 25 3.06987 2.58322 3.11874 0.18173 25 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 26 0.14438 3.36166 2.78983 3.26157 26 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 27 3.41166 0.13280 3.46202 2.81336 27 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 28 3.41166 0.13280 3.46202 2.81336 28 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 29 3.41166 0.13280 3.46202 2.81336 29 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 30 2.93451 3.56885 0.11925 3.47156 30 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 31 3.41166 0.13280 3.46202 2.81336 31 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 32 3.06987 2.58322 3.11874 0.18173 32 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 33 2.93451 3.56885 0.11925 3.47156 33 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 34 0.14438 3.36166 2.78983 3.26157 34 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 35 2.93451 3.56885 0.11925 3.47156 35 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 36 3.06987 2.58322 3.11874 0.18173 36 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 37 3.06987 2.58322 3.11874 0.18173 37 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 38 3.06987 2.58322 3.11874 0.18173 38 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 39 0.14438 3.36166 2.78983 3.26157 39 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 40 0.14438 3.36166 2.78983 3.26157 40 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 41 2.93451 3.56885 0.11925 3.47156 41 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 42 3.41166 0.13280 3.46202 2.81336 42 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 43 0.14438 3.36166 2.78983 3.26157 43 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 44 3.06987 2.58322 3.11874 0.18173 44 - - 1.38629 1.38629 1.38629 1.38629 0.03728 4.00097 4.00097 1.46634 0.26236 1.09861 0.40547 45 0.14438 3.36166 2.78983 3.26157 45 - - 1.38629 1.38629 1.38629 1.38629 0.01881 3.98251 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_ninel_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:13:10 2012 NSEQ 6 EFFN 3.131836 CKSUM 1499209124 STATS LOCAL MSV -8.0603 0.71933 STATS LOCAL VITERBI -7.7477 0.71933 STATS LOCAL FORWARD -3.6468 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40997 1.15883 1.31859 1.74593 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 0.00000 * 1 3.36028 0.13924 3.41276 2.77566 1 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 2 3.02537 2.55482 3.07592 0.18922 2 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 3 2.90299 3.52335 0.12446 3.42144 3 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 4 3.36028 0.13924 3.41276 2.77566 4 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 5 2.90299 3.52335 0.12446 3.42144 5 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 6 0.15052 3.31717 2.76074 3.21294 6 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 7 3.36028 0.13924 3.41276 2.77566 7 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 8 3.36028 0.13924 3.41276 2.77566 8 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 9 3.36028 0.13924 3.41276 2.77566 9 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 10 3.36028 0.13924 3.41276 2.77566 10 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 11 0.15052 3.31717 2.76074 3.21294 11 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 12 2.90299 3.52335 0.12446 3.42144 12 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 13 2.90299 3.52335 0.12446 3.42144 13 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 14 3.02537 2.55482 3.07592 0.18922 14 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 15 3.36028 0.13924 3.41276 2.77566 15 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 16 0.15052 3.31717 2.76074 3.21294 16 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 17 2.90299 3.52335 0.12446 3.42144 17 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 18 2.90299 3.52335 0.12446 3.42144 18 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 19 3.36028 0.13924 3.41276 2.77566 19 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 20 2.90299 3.52335 0.12446 3.42144 20 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 21 2.90299 3.52335 0.12446 3.42144 21 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 22 2.90299 3.52335 0.12446 3.42144 22 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 23 0.15052 3.31717 2.76074 3.21294 23 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 24 3.36028 0.13924 3.41276 2.77566 24 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 25 3.36028 0.13924 3.41276 2.77566 25 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 26 0.15052 3.31717 2.76074 3.21294 26 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 27 3.36028 0.13924 3.41276 2.77566 27 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 28 3.36028 0.13924 3.41276 2.77566 28 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 29 3.36028 0.13924 3.41276 2.77566 29 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 30 2.90299 3.52335 0.12446 3.42144 30 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 31 3.36028 0.13924 3.41276 2.77566 31 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 32 3.02537 2.55482 3.07592 0.18922 32 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 33 2.90299 3.52335 0.12446 3.42144 33 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 34 0.15052 3.31717 2.76074 3.21294 34 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 35 0.15052 3.31717 2.76074 3.21294 35 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 36 3.02537 2.55482 3.07592 0.18922 36 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 37 3.02537 2.55482 3.07592 0.18922 37 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 38 3.02537 2.55482 3.07592 0.18922 38 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 39 0.15052 3.31717 2.76074 3.21294 39 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 40 0.15052 3.31717 2.76074 3.21294 40 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 41 2.90299 3.52335 0.12446 3.42144 41 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 42 3.36028 0.13924 3.41276 2.77566 42 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 43 0.15052 3.31717 2.76074 3.21294 43 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 44 3.02537 2.55482 3.07592 0.18922 44 - - 1.38629 1.38629 1.38629 1.38629 0.03823 3.97628 3.97628 1.46634 0.26236 1.09861 0.40547 45 0.15052 3.31717 2.76074 3.21294 45 - - 1.38629 1.38629 1.38629 1.38629 0.01930 3.95735 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_ninem_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:13:15 2012 NSEQ 5 EFFN 3.168945 CKSUM 2727964424 STATS LOCAL MSV -8.0675 0.71932 STATS LOCAL VITERBI -7.7708 0.71932 STATS LOCAL FORWARD -3.8493 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34344 1.21077 1.38248 1.66004 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 0.00000 * 1 3.37482 0.13738 3.42671 2.78637 1 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 2 3.03791 2.56284 3.08799 0.18707 2 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 3 2.91196 3.53626 0.12295 3.43565 3 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 4 3.37482 0.13738 3.42671 2.78637 4 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 5 2.91196 3.53626 0.12295 3.43565 5 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 6 0.14875 3.32976 2.76899 3.22669 6 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 7 3.37482 0.13738 3.42671 2.78637 7 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 8 3.37482 0.13738 3.42671 2.78637 8 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 9 3.37482 0.13738 3.42671 2.78637 9 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 10 3.37482 0.13738 3.42671 2.78637 10 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 11 0.14875 3.32976 2.76899 3.22669 11 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 12 2.91196 3.53626 0.12295 3.43565 12 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 13 2.91196 3.53626 0.12295 3.43565 13 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 14 3.03791 2.56284 3.08799 0.18707 14 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 15 3.37482 0.13738 3.42671 2.78637 15 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 16 0.14875 3.32976 2.76899 3.22669 16 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 17 0.14875 3.32976 2.76899 3.22669 17 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 18 2.91196 3.53626 0.12295 3.43565 18 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 19 3.37482 0.13738 3.42671 2.78637 19 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 20 2.91196 3.53626 0.12295 3.43565 20 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 21 2.91196 3.53626 0.12295 3.43565 21 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 22 2.91196 3.53626 0.12295 3.43565 22 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 23 0.14875 3.32976 2.76899 3.22669 23 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 24 3.37482 0.13738 3.42671 2.78637 24 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 25 3.03791 2.56284 3.08799 0.18707 25 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 26 0.14875 3.32976 2.76899 3.22669 26 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 27 3.37482 0.13738 3.42671 2.78637 27 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 28 3.37482 0.13738 3.42671 2.78637 28 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 29 3.37482 0.13738 3.42671 2.78637 29 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 30 2.91196 3.53626 0.12295 3.43565 30 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 31 3.37482 0.13738 3.42671 2.78637 31 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 32 3.03791 2.56284 3.08799 0.18707 32 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 33 2.91196 3.53626 0.12295 3.43565 33 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 34 0.14875 3.32976 2.76899 3.22669 34 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 35 0.14875 3.32976 2.76899 3.22669 35 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 36 3.03791 2.56284 3.08799 0.18707 36 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 37 3.03791 2.56284 3.08799 0.18707 37 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 38 3.03791 2.56284 3.08799 0.18707 38 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 39 0.14875 3.32976 2.76899 3.22669 39 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 40 0.14875 3.32976 2.76899 3.22669 40 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 41 2.91196 3.53626 0.12295 3.43565 41 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 42 3.37482 0.13738 3.42671 2.78637 42 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 43 0.14875 3.32976 2.76899 3.22669 43 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 44 3.03791 2.56284 3.08799 0.18707 44 - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98322 3.98322 1.46634 0.26236 1.09861 0.40547 45 0.14875 3.32976 2.76899 3.22669 45 - - 1.38629 1.38629 1.38629 1.38629 0.01916 3.96442 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_ninen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:13:23 2012 NSEQ 4 EFFN 3.230469 CKSUM 2299958284 STATS LOCAL MSV -8.1930 0.71932 STATS LOCAL VITERBI -7.7386 0.71932 STATS LOCAL FORWARD -3.7873 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.46710 1.20843 1.27156 1.65891 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 0.00000 * 1 3.39853 0.13441 3.44944 2.80375 1 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 2 3.05845 2.57594 3.10775 0.18362 2 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 3 2.92650 3.55724 0.12055 3.45877 3 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 4 3.39853 0.13441 3.44944 2.80375 4 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 5 2.92650 3.55724 0.12055 3.45877 5 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 6 0.14592 3.35028 2.78241 3.24912 6 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 7 3.39853 0.13441 3.44944 2.80375 7 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 8 3.39853 0.13441 3.44944 2.80375 8 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 9 3.39853 0.13441 3.44944 2.80375 9 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 10 3.39853 0.13441 3.44944 2.80375 10 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 11 0.14592 3.35028 2.78241 3.24912 11 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 12 2.92650 3.55724 0.12055 3.45877 12 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 13 2.92650 3.55724 0.12055 3.45877 13 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 14 3.05845 2.57594 3.10775 0.18362 14 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 15 3.39853 0.13441 3.44944 2.80375 15 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 16 0.14592 3.35028 2.78241 3.24912 16 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 17 2.92650 3.55724 0.12055 3.45877 17 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 18 1.65135 2.79903 0.38930 2.66201 18 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 19 3.39853 0.13441 3.44944 2.80375 19 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 20 2.92650 3.55724 0.12055 3.45877 20 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 21 2.92650 3.55724 0.12055 3.45877 21 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 22 2.92650 3.55724 0.12055 3.45877 22 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 23 2.92650 3.55724 0.12055 3.45877 23 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 24 3.39853 0.13441 3.44944 2.80375 24 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 25 3.05845 2.57594 3.10775 0.18362 25 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 26 0.14592 3.35028 2.78241 3.24912 26 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 27 3.39853 0.13441 3.44944 2.80375 27 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 28 3.39853 0.13441 3.44944 2.80375 28 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 29 3.39853 0.13441 3.44944 2.80375 29 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 30 2.92650 3.55724 0.12055 3.45877 30 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 31 3.39853 0.13441 3.44944 2.80375 31 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 32 3.05845 2.57594 3.10775 0.18362 32 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 33 2.92650 3.55724 0.12055 3.45877 33 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 34 0.14592 3.35028 2.78241 3.24912 34 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 35 0.14592 3.35028 2.78241 3.24912 35 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 36 3.05845 2.57594 3.10775 0.18362 36 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 37 3.05845 2.57594 3.10775 0.18362 37 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 38 3.05845 2.57594 3.10775 0.18362 38 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 39 0.14592 3.35028 2.78241 3.24912 39 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 40 0.14592 3.35028 2.78241 3.24912 40 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 41 2.92650 3.55724 0.12055 3.45877 41 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 42 3.39853 0.13441 3.44944 2.80375 42 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 43 0.14592 3.35028 2.78241 3.24912 43 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 44 3.05845 2.57594 3.10775 0.18362 44 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 45 0.14592 3.35028 2.78241 3.24912 45 - - 1.38629 1.38629 1.38629 1.38629 0.01894 3.97602 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_nineo_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:13:30 2012 NSEQ 11 EFFN 3.440186 CKSUM 1151203971 STATS LOCAL MSV -7.5786 0.71933 STATS LOCAL VITERBI -7.5431 0.71933 STATS LOCAL FORWARD -4.0370 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.38732 1.33960 1.22064 1.64370 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 0.00000 * 1 0.13712 3.41716 2.82583 3.32234 1 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 2 3.47557 0.12526 3.52321 2.85981 2 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 3 2.97309 3.62505 0.11316 3.53363 3 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 4 0.13712 3.41716 2.82583 3.32234 4 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 5 2.97309 3.62505 0.11316 3.53363 5 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 6 0.13712 3.41716 2.82583 3.32234 6 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 7 3.47557 0.12526 3.52321 2.85981 7 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 8 3.47557 0.12526 3.52321 2.85981 8 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 9 3.12600 2.61890 3.17272 0.17277 9 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 10 2.61030 0.48486 2.68062 1.41805 10 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 11 0.13712 3.41716 2.82583 3.32234 11 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 12 2.97309 3.62505 0.11316 3.53363 12 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 13 2.97309 3.62505 0.11316 3.53363 13 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 14 3.12600 2.61890 3.17272 0.17277 14 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 15 3.47557 0.12526 3.52321 2.85981 15 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 16 0.13712 3.41716 2.82583 3.32234 16 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 17 2.97309 3.62505 0.11316 3.53363 17 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 18 2.97309 3.62505 0.11316 3.53363 18 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 19 3.47557 0.12526 3.52321 2.85981 19 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 20 2.97309 3.62505 0.11316 3.53363 20 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 21 2.97309 3.62505 0.11316 3.53363 21 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 22 2.97309 3.62505 0.11316 3.53363 22 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 23 2.97309 3.62505 0.11316 3.53363 23 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 24 3.47557 0.12526 3.52321 2.85981 24 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 25 3.12600 2.61890 3.17272 0.17277 25 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 26 0.13712 3.41716 2.82583 3.32234 26 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 27 3.47557 0.12526 3.52321 2.85981 27 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 28 3.47557 0.12526 3.52321 2.85981 28 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 29 3.47557 0.12526 3.52321 2.85981 29 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 30 2.97309 3.62505 0.11316 3.53363 30 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 31 3.47557 0.12526 3.52321 2.85981 31 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 32 3.12600 2.61890 3.17272 0.17277 32 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 33 2.24285 1.62386 0.52442 2.25562 33 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 34 0.13712 3.41716 2.82583 3.32234 34 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 35 1.94892 3.03443 0.28120 2.90791 35 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 36 3.12600 2.61890 3.17272 0.17277 36 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 37 3.12600 2.61890 3.17272 0.17277 37 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 38 3.12600 2.61890 3.17272 0.17277 38 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 39 0.13712 3.41716 2.82583 3.32234 39 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 40 0.13712 3.41716 2.82583 3.32234 40 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 41 2.97309 3.62505 0.11316 3.53363 41 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 42 3.47557 0.12526 3.52321 2.85981 42 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 43 0.13712 3.41716 2.82583 3.32234 43 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 44 3.12600 2.61890 3.17272 0.17277 44 - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 45 0.13712 3.41716 2.82583 3.32234 45 - - 1.38629 1.38629 1.38629 1.38629 0.01821 4.01461 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_ninep_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:13:35 2012 NSEQ 610 EFFN 4.007034 CKSUM 1262486263 STATS LOCAL MSV -7.0516 0.71933 STATS LOCAL VITERBI -7.7102 0.71933 STATS LOCAL FORWARD -3.8833 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.44177 1.25215 1.23730 1.67432 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 0.00000 * 1 1.14572 1.16543 2.09655 1.39700 1 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 2 1.81419 0.98237 2.18997 1.04787 2 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 3 2.86297 3.69678 0.11517 3.61619 3 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 4 2.98447 0.22606 2.95701 2.30470 4 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 5 3.07994 3.78278 0.09787 3.70849 5 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 6 0.11850 3.57637 2.92823 3.49716 6 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 7 3.65723 0.10638 3.69668 2.98961 7 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 8 3.65723 0.10638 3.69668 2.98961 8 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 9 3.56466 0.12429 3.60782 2.78941 9 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 10 3.60914 0.11551 3.65048 2.88174 10 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 11 0.11850 3.57637 2.92823 3.49716 11 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 12 3.07994 3.78278 0.09787 3.70849 12 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 13 3.07994 3.78278 0.09787 3.70849 13 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 14 3.29117 2.72365 3.33142 0.14918 14 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 15 3.65723 0.10638 3.69668 2.98961 15 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 16 0.11850 3.57637 2.92823 3.49716 16 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 17 2.93580 3.72759 0.10886 3.64948 17 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 18 2.87638 3.50440 0.14021 3.11409 18 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 19 3.60880 0.11558 3.65015 2.88101 19 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 20 2.86023 3.69559 0.11542 3.61490 20 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 21 2.94694 3.73212 0.10794 3.65437 21 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 22 3.07994 3.78278 0.09787 3.70849 22 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 23 0.27754 3.04298 1.98392 2.86236 23 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 24 2.22793 0.70822 2.44636 1.16116 24 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 25 3.07400 2.19331 3.12394 0.22535 25 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 26 0.12732 3.54052 2.82860 3.45911 26 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 27 3.65723 0.10638 3.69668 2.98961 27 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 28 3.60785 0.11576 3.64924 2.87898 28 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 29 3.65723 0.10638 3.69668 2.98961 29 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 30 2.95516 3.73544 0.10727 3.65794 30 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 31 3.65723 0.10638 3.69668 2.98961 31 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 32 3.25323 2.61818 3.29510 0.16093 32 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 33 3.07994 3.78278 0.09787 3.70849 33 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 34 0.12719 3.54105 2.83002 3.45968 34 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 35 2.59329 3.49128 0.15335 3.29870 35 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 36 3.24508 2.59646 3.28731 0.16353 36 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 37 3.29117 2.72365 3.33142 0.14918 37 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 38 3.29117 2.72365 3.33142 0.14918 38 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 39 0.11850 3.57637 2.92823 3.49716 39 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 40 0.11850 3.57637 2.92823 3.49716 40 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 41 3.07994 3.78278 0.09787 3.70849 41 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 42 3.65723 0.10638 3.69668 2.98961 42 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 43 0.11850 3.57637 2.92823 3.49716 43 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 44 3.29117 2.72365 3.33142 0.14918 44 - - 1.38629 1.38629 1.38629 1.38629 0.03275 4.12827 4.12827 1.46634 0.26236 1.09861 0.40547 45 0.13605 3.29324 2.88454 3.37586 45 - - 1.38629 1.38629 1.38629 1.38629 0.01651 4.11203 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_nineteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:20:52 2012 NSEQ 29 EFFN 4.053345 CKSUM 688373050 STATS LOCAL MSV -7.0323 0.71932 STATS LOCAL VITERBI -7.6275 0.71932 STATS LOCAL FORWARD -3.5999 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.53105 1.23724 1.21047 1.63245 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 0.00000 * 1 2.03882 1.06013 2.33707 0.85145 1 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 2 3.27048 0.19609 3.32492 2.26243 2 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 3 3.08764 3.79422 0.09686 3.72119 3 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 4 3.67051 0.10513 3.70935 2.99900 4 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 5 3.08764 3.79422 0.09686 3.72119 5 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 6 0.11725 3.58812 2.93578 3.51009 6 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 7 3.67051 0.10513 3.70935 2.99900 7 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 8 3.67051 0.10513 3.70935 2.99900 8 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 9 2.58614 0.64370 2.65678 1.11117 9 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 10 3.37684 0.16773 3.42749 2.43276 10 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 11 0.11725 3.58812 2.93578 3.51009 11 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 12 3.08764 3.79422 0.09686 3.72119 12 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 13 3.08764 3.79422 0.09686 3.72119 13 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 14 3.30362 2.73157 3.34338 0.14755 14 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 15 3.67051 0.10513 3.70935 2.99900 15 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 16 0.11725 3.58812 2.93578 3.51009 16 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 17 3.08764 3.79422 0.09686 3.72119 17 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 18 3.08764 3.79422 0.09686 3.72119 18 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 19 3.03310 2.08635 3.08496 0.24595 19 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 20 3.08764 3.79422 0.09686 3.72119 20 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 21 2.08863 1.84152 0.79800 1.31923 21 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 22 3.08764 3.79422 0.09686 3.72119 22 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 23 3.08764 3.79422 0.09686 3.72119 23 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 24 2.58614 0.64370 2.65678 1.11117 24 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 25 3.24588 0.20324 3.30115 2.22429 25 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 26 0.11725 3.58812 2.93578 3.51009 26 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 27 3.67051 0.10513 3.70935 2.99900 27 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 28 3.67051 0.10513 3.70935 2.99900 28 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 29 3.03310 2.08635 3.08496 0.24595 29 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 30 3.08764 3.79422 0.09686 3.72119 30 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 31 3.67051 0.10513 3.70935 2.99900 31 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 32 3.30362 2.73157 3.34338 0.14755 32 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 33 3.08764 3.79422 0.09686 3.72119 33 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 34 0.11725 3.58812 2.93578 3.51009 34 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 35 3.08764 3.79422 0.09686 3.72119 35 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 36 3.24588 0.20324 3.30115 2.22429 36 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 37 3.30362 2.73157 3.34338 0.14755 37 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 38 3.30362 2.73157 3.34338 0.14755 38 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 39 0.11725 3.58812 2.93578 3.51009 39 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 40 0.11725 3.58812 2.93578 3.51009 40 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 41 3.08764 3.79422 0.09686 3.72119 41 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 42 3.67051 0.10513 3.70935 2.99900 42 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 43 0.11725 3.58812 2.93578 3.51009 43 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 44 3.30362 2.73157 3.34338 0.14755 44 - - 1.38629 1.38629 1.38629 1.38629 0.03251 4.13570 4.13570 1.46634 0.26236 1.09861 0.40547 45 0.11725 3.58812 2.93578 3.51009 45 - - 1.38629 1.38629 1.38629 1.38629 0.01638 4.11958 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:10:54 2012 NSEQ 6 EFFN 3.225586 CKSUM 92353348 STATS LOCAL MSV -8.1186 0.71931 STATS LOCAL VITERBI -7.6232 0.71931 STATS LOCAL FORWARD -3.7345 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.35281 1.21043 1.37640 1.65584 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 0.00000 * 1 3.05683 2.57491 3.10619 0.18389 1 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 2 3.05683 2.57491 3.10619 0.18389 2 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 3 2.92536 3.55560 0.12074 3.45696 3 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 4 3.39667 0.13464 3.44765 2.80239 4 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 5 0.30359 2.90318 1.93256 2.77723 5 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 6 0.14614 3.34867 2.78135 3.24736 6 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 7 3.39667 0.13464 3.44765 2.80239 7 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 8 3.39667 0.13464 3.44765 2.80239 8 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 9 3.39667 0.13464 3.44765 2.80239 9 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 10 3.39667 0.13464 3.44765 2.80239 10 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 11 0.14614 3.34867 2.78135 3.24736 11 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 12 0.14614 3.34867 2.78135 3.24736 12 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 13 2.92536 3.55560 0.12074 3.45696 13 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 14 3.05683 2.57491 3.10619 0.18389 14 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 15 3.39667 0.13464 3.44765 2.80239 15 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 16 0.14614 3.34867 2.78135 3.24736 16 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 17 2.92536 3.55560 0.12074 3.45696 17 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 18 2.92536 3.55560 0.12074 3.45696 18 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 19 3.05683 2.57491 3.10619 0.18389 19 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 20 2.92536 3.55560 0.12074 3.45696 20 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 21 2.92536 3.55560 0.12074 3.45696 21 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 22 2.92536 3.55560 0.12074 3.45696 22 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 23 0.14614 3.34867 2.78135 3.24736 23 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 24 3.39667 0.13464 3.44765 2.80239 24 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 25 3.05683 2.57491 3.10619 0.18389 25 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 26 0.14614 3.34867 2.78135 3.24736 26 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 27 3.39667 0.13464 3.44765 2.80239 27 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 28 3.39667 0.13464 3.44765 2.80239 28 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 29 3.39667 0.13464 3.44765 2.80239 29 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 30 2.92536 3.55560 0.12074 3.45696 30 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 31 3.39667 0.13464 3.44765 2.80239 31 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 32 3.39667 0.13464 3.44765 2.80239 32 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 33 2.92536 3.55560 0.12074 3.45696 33 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 34 0.14614 3.34867 2.78135 3.24736 34 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 35 2.92536 3.55560 0.12074 3.45696 35 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 36 3.39667 0.13464 3.44765 2.80239 36 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 37 3.05683 2.57491 3.10619 0.18389 37 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 38 3.05683 2.57491 3.10619 0.18389 38 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 39 0.14614 3.34867 2.78135 3.24736 39 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 40 0.14614 3.34867 2.78135 3.24736 40 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 41 2.92536 3.55560 0.12074 3.45696 41 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 42 3.39667 0.13464 3.44765 2.80239 42 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 43 0.14614 3.34867 2.78135 3.24736 43 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 44 3.05683 2.57491 3.10619 0.18389 44 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 45 0.14614 3.34867 2.78135 3.24736 45 - - 1.38629 1.38629 1.38629 1.38629 0.01896 3.97511 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_seven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:11:44 2012 NSEQ 2 EFFN 2.000000 CKSUM 2919369856 STATS LOCAL MSV -7.6061 0.72738 STATS LOCAL VITERBI -8.1247 0.72738 STATS LOCAL FORWARD -3.1589 0.72738 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.39994 1.35690 1.20998 1.62087 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_seventeen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:20:31 2012 NSEQ 315 EFFN 3.917313 CKSUM 3308305825 STATS LOCAL MSV -6.8187 0.71931 STATS LOCAL VITERBI -7.7150 0.71931 STATS LOCAL FORWARD -3.9240 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.48096 1.28928 1.21174 1.61229 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 0.00000 * 1 1.70907 1.22019 1.38354 1.29791 1 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 2 2.55787 1.37120 2.56594 0.52445 2 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 3 3.06461 3.76005 0.09993 3.68324 3 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 4 3.09656 0.15677 3.38125 2.71979 4 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 5 3.06461 3.76005 0.09993 3.68324 5 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 6 0.12104 3.55308 2.91328 3.47156 6 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 7 2.74203 0.43166 2.81020 1.48749 7 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 8 3.63085 0.10891 3.67153 2.97093 8 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 9 3.52194 0.13035 3.56685 2.74224 9 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 10 3.63085 0.10891 3.67153 2.97093 10 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 11 0.12104 3.55308 2.91328 3.47156 11 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 12 3.06461 3.76005 0.09993 3.68324 12 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 13 3.06461 3.76005 0.09993 3.68324 13 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 14 3.26661 2.70806 3.30783 0.15245 14 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 15 3.63085 0.10891 3.67153 2.97093 15 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 16 0.12104 3.55308 2.91328 3.47156 16 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 17 3.06461 3.76005 0.09993 3.68324 17 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 18 3.06461 3.76005 0.09993 3.68324 18 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 19 3.63085 0.10891 3.67153 2.97093 19 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 20 3.06461 3.76005 0.09993 3.68324 20 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 21 3.06461 3.76005 0.09993 3.68324 21 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 22 3.06461 3.76005 0.09993 3.68324 22 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 23 0.53592 2.70900 1.30245 2.57174 23 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 24 2.44202 0.99805 2.46142 0.77848 24 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 25 2.98828 2.53537 3.16297 0.18863 25 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 26 0.12104 3.55308 2.91328 3.47156 26 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 27 3.63085 0.10891 3.67153 2.97093 27 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 28 3.63085 0.10891 3.67153 2.97093 28 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 29 3.63085 0.10891 3.67153 2.97093 29 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 30 3.06461 3.76005 0.09993 3.68324 30 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 31 3.63085 0.10891 3.67153 2.97093 31 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 32 3.26661 2.70806 3.30783 0.15245 32 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 33 3.06461 3.76005 0.09993 3.68324 33 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 34 0.12104 3.55308 2.91328 3.47156 34 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 35 3.06461 3.76005 0.09993 3.68324 35 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 36 3.26661 2.70806 3.30783 0.15245 36 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 37 3.26661 2.70806 3.30783 0.15245 37 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 38 3.26661 2.70806 3.30783 0.15245 38 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 39 0.12104 3.55308 2.91328 3.47156 39 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 40 0.12104 3.55308 2.91328 3.47156 40 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 41 3.06461 3.76005 0.09993 3.68324 41 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 42 3.63085 0.10891 3.67153 2.97093 42 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 43 0.12104 3.55308 2.91328 3.47156 43 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 44 3.26661 2.70806 3.30783 0.15245 44 - - 1.38629 1.38629 1.38629 1.38629 0.03324 4.11371 4.11371 1.46634 0.26236 1.09861 0.40547 45 0.12104 3.55308 2.91328 3.47156 45 - - 1.38629 1.38629 1.38629 1.38629 0.01676 4.09722 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_six_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:11:36 2012 NSEQ 16 EFFN 3.230469 CKSUM 3506547780 STATS LOCAL MSV -8.2747 0.71931 STATS LOCAL VITERBI -7.5578 0.71931 STATS LOCAL FORWARD -3.9985 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.39108 1.33292 1.20881 1.66636 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 0.00000 * 1 0.14592 3.35028 2.78241 3.24912 1 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 2 3.39853 0.13441 3.44944 2.80375 2 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 3 2.92650 3.55724 0.12055 3.45877 3 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 4 0.14592 3.35028 2.78241 3.24912 4 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 5 2.92650 3.55724 0.12055 3.45877 5 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 6 0.14592 3.35028 2.78241 3.24912 6 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 7 3.39853 0.13441 3.44944 2.80375 7 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 8 3.39853 0.13441 3.44944 2.80375 8 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 9 3.05845 2.57594 3.10775 0.18362 9 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 10 3.39853 0.13441 3.44944 2.80375 10 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 11 0.14592 3.35028 2.78241 3.24912 11 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 12 2.92650 3.55724 0.12055 3.45877 12 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 13 2.92650 3.55724 0.12055 3.45877 13 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 14 3.05845 2.57594 3.10775 0.18362 14 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 15 3.39853 0.13441 3.44944 2.80375 15 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 16 0.14592 3.35028 2.78241 3.24912 16 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 17 2.92650 3.55724 0.12055 3.45877 17 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 18 2.92650 3.55724 0.12055 3.45877 18 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 19 3.39853 0.13441 3.44944 2.80375 19 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 20 2.92650 3.55724 0.12055 3.45877 20 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 21 2.92650 3.55724 0.12055 3.45877 21 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 22 2.92650 3.55724 0.12055 3.45877 22 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 23 2.92650 3.55724 0.12055 3.45877 23 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 24 3.39853 0.13441 3.44944 2.80375 24 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 25 3.05845 2.57594 3.10775 0.18362 25 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 26 0.14592 3.35028 2.78241 3.24912 26 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 27 3.39853 0.13441 3.44944 2.80375 27 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 28 3.39853 0.13441 3.44944 2.80375 28 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 29 3.39853 0.13441 3.44944 2.80375 29 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 30 2.92650 3.55724 0.12055 3.45877 30 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 31 3.39853 0.13441 3.44944 2.80375 31 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 32 3.05845 2.57594 3.10775 0.18362 32 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 33 2.92650 3.55724 0.12055 3.45877 33 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 34 0.14592 3.35028 2.78241 3.24912 34 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 35 1.65135 2.79903 0.38930 2.66201 35 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 36 3.05845 2.57594 3.10775 0.18362 36 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 37 3.05845 2.57594 3.10775 0.18362 37 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 38 3.05845 2.57594 3.10775 0.18362 38 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 39 0.14592 3.35028 2.78241 3.24912 39 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 40 0.14592 3.35028 2.78241 3.24912 40 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 41 2.92650 3.55724 0.12055 3.45877 41 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 42 3.39853 0.13441 3.44944 2.80375 42 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 43 0.14592 3.35028 2.78241 3.24912 43 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 44 3.05845 2.57594 3.10775 0.18362 44 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 45 0.14592 3.35028 2.78241 3.24912 45 - - 1.38629 1.38629 1.38629 1.38629 0.01894 3.97602 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_sixteena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:16:12 2012 NSEQ 44 EFFN 3.585205 CKSUM 645047424 STATS LOCAL MSV -7.5020 0.71933 STATS LOCAL VITERBI -7.7177 0.71933 STATS LOCAL FORWARD -3.8505 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.44682 1.21642 1.26677 1.67850 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 0.00000 * 1 2.01891 0.44736 2.35801 2.01530 1 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 2 3.40225 0.14546 3.45187 2.65373 2 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 3 3.00287 3.66877 0.10867 3.58200 3 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 4 2.75860 0.19212 3.16597 2.67018 4 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 5 3.00287 3.66877 0.10867 3.58200 5 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 6 0.13171 3.46074 2.85396 3.37014 6 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 7 3.52559 0.11970 3.57103 2.89585 7 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 8 3.52559 0.11970 3.57103 2.89585 8 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 9 2.79989 0.18650 3.19116 2.68533 9 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 10 3.52559 0.11970 3.57103 2.89585 10 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 11 0.13171 3.46074 2.85396 3.37014 11 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 12 3.00287 3.66877 0.10867 3.58200 12 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 13 3.00287 3.66877 0.10867 3.58200 13 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 14 3.17060 2.64719 3.21559 0.16601 14 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 15 3.52559 0.11970 3.57103 2.89585 15 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 16 0.13171 3.46074 2.85396 3.37014 16 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 17 3.00287 3.66877 0.10867 3.58200 17 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 18 1.51507 2.79099 0.43315 2.65382 18 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 19 3.52559 0.11970 3.57103 2.89585 19 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 20 3.00287 3.66877 0.10867 3.58200 20 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 21 3.00287 3.66877 0.10867 3.58200 21 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 22 3.00287 3.66877 0.10867 3.58200 22 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 23 0.15890 3.35672 2.60794 3.26017 23 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 24 2.57661 1.39705 2.64361 0.50164 24 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 25 3.17060 2.64719 3.21559 0.16601 25 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 26 0.13171 3.46074 2.85396 3.37014 26 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 27 3.52559 0.11970 3.57103 2.89585 27 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 28 3.52559 0.11970 3.57103 2.89585 28 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 29 3.52559 0.11970 3.57103 2.89585 29 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 30 3.00287 3.66877 0.10867 3.58200 30 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 31 3.52559 0.11970 3.57103 2.89585 31 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 32 3.17060 2.64719 3.21559 0.16601 32 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 33 3.00287 3.66877 0.10867 3.58200 33 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 34 0.13171 3.46074 2.85396 3.37014 34 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 35 2.43762 3.38266 0.17325 3.27685 35 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 36 3.17060 2.64719 3.21559 0.16601 36 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 37 3.17060 2.64719 3.21559 0.16601 37 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 38 3.17060 2.64719 3.21559 0.16601 38 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 39 0.13171 3.46074 2.85396 3.37014 39 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 40 0.13171 3.46074 2.85396 3.37014 40 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 41 3.00287 3.66877 0.10867 3.58200 41 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 42 3.52559 0.11970 3.57103 2.89585 42 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 43 0.13171 3.46074 2.85396 3.37014 43 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 44 3.17060 2.64719 3.21559 0.16601 44 - - 1.38629 1.38629 1.38629 1.38629 0.03518 4.05789 4.05789 1.46634 0.26236 1.09861 0.40547 45 0.13171 3.46074 2.85396 3.37014 45 - - 1.38629 1.38629 1.38629 1.38629 0.01775 4.04045 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_sixteenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:16:20 2012 NSEQ 18 EFFN 3.238770 CKSUM 1315903361 STATS LOCAL MSV -8.3026 0.71933 STATS LOCAL VITERBI -7.5704 0.71933 STATS LOCAL FORWARD -4.0875 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.47286 1.23053 1.25337 1.64479 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 0.00000 * 1 0.14555 3.35302 2.78419 3.25212 1 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 2 2.56199 0.50253 2.63307 1.40246 2 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 3 2.92843 3.56004 0.12024 3.46185 3 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 4 3.40169 0.13402 3.45247 2.80607 4 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 5 2.92843 3.56004 0.12024 3.46185 5 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 6 0.14555 3.35302 2.78419 3.25212 6 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 7 3.40169 0.13402 3.45247 2.80607 7 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 8 3.40169 0.13402 3.45247 2.80607 8 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 9 3.06119 2.57769 3.11039 0.18316 9 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 10 3.40169 0.13402 3.45247 2.80607 10 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 11 0.14555 3.35302 2.78419 3.25212 11 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 12 2.92843 3.56004 0.12024 3.46185 12 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 13 3.40169 0.13402 3.45247 2.80607 13 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 14 3.06119 2.57769 3.11039 0.18316 14 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 15 3.40169 0.13402 3.45247 2.80607 15 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 16 0.14555 3.35302 2.78419 3.25212 16 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 17 2.92843 3.56004 0.12024 3.46185 17 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 18 2.92843 3.56004 0.12024 3.46185 18 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 19 3.40169 0.13402 3.45247 2.80607 19 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 20 2.92843 3.56004 0.12024 3.46185 20 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 21 2.92843 3.56004 0.12024 3.46185 21 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 22 2.92843 3.56004 0.12024 3.46185 22 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 23 2.92843 3.56004 0.12024 3.46185 23 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 24 3.40169 0.13402 3.45247 2.80607 24 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 25 3.06119 2.57769 3.11039 0.18316 25 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 26 0.14555 3.35302 2.78419 3.25212 26 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 27 3.40169 0.13402 3.45247 2.80607 27 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 28 3.40169 0.13402 3.45247 2.80607 28 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 29 3.40169 0.13402 3.45247 2.80607 29 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 30 2.92843 3.56004 0.12024 3.46185 30 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 31 3.40169 0.13402 3.45247 2.80607 31 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 32 3.06119 2.57769 3.11039 0.18316 32 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 33 2.92843 3.56004 0.12024 3.46185 33 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 34 0.14555 3.35302 2.78419 3.25212 34 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 35 2.92843 3.56004 0.12024 3.46185 35 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 36 3.06119 2.57769 3.11039 0.18316 36 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 37 3.06119 2.57769 3.11039 0.18316 37 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 38 3.06119 2.57769 3.11039 0.18316 38 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 39 0.14555 3.35302 2.78419 3.25212 39 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 40 0.14555 3.35302 2.78419 3.25212 40 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 41 2.92843 3.56004 0.12024 3.46185 41 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 42 3.40169 0.13402 3.45247 2.80607 42 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 43 0.14555 3.35302 2.78419 3.25212 43 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 44 3.06119 2.57769 3.11039 0.18316 44 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99614 3.99614 1.46634 0.26236 1.09861 0.40547 45 0.14555 3.35302 2.78419 3.25212 45 - - 1.38629 1.38629 1.38629 1.38629 0.01891 3.97758 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_sixteenc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:16:25 2012 NSEQ 77 EFFN 3.689270 CKSUM 597093898 STATS LOCAL MSV -7.5676 0.71931 STATS LOCAL VITERBI -7.7877 0.71931 STATS LOCAL FORWARD -3.9275 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.51890 1.43798 1.04634 1.64808 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 0.00000 * 1 2.40425 3.08130 0.22999 2.67035 1 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 2 3.01817 2.22960 3.06947 0.22679 2 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 3 2.61265 3.50636 0.14664 3.40965 3 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 4 2.00072 0.72874 2.10141 1.34721 4 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 5 2.31739 3.33257 0.19122 3.22347 5 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 6 0.12813 3.49076 2.87327 3.40309 6 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 7 3.45939 0.13642 3.50685 2.71682 7 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 8 3.55992 0.11605 3.60383 2.92044 8 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 9 3.30137 0.17320 3.35448 2.43877 9 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 10 3.38645 0.15256 3.43656 2.58377 10 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 11 0.12813 3.49076 2.87327 3.40309 11 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 12 3.02313 3.69864 0.10572 3.61510 12 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 13 3.02313 3.69864 0.10572 3.61510 13 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 14 0.15781 3.32082 2.80161 3.01275 14 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 15 3.20158 2.66683 3.24536 0.16149 15 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 16 3.02313 3.69864 0.10572 3.61510 16 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 17 3.02313 3.69864 0.10572 3.61510 17 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 18 2.94893 3.54129 0.12822 3.24501 18 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 19 3.33426 0.16497 3.38622 2.49375 19 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 20 3.02313 3.69864 0.10572 3.61510 20 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 21 3.02313 3.69864 0.10572 3.61510 21 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 22 3.02313 3.69864 0.10572 3.61510 22 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 23 1.90722 3.06142 0.28552 2.93628 23 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 24 3.20158 2.66683 3.24536 0.16149 24 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 25 2.74217 3.57362 0.13151 3.48193 25 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 26 0.12813 3.49076 2.87327 3.40309 26 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 27 3.55992 0.11605 3.60383 2.92044 27 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 28 3.55992 0.11605 3.60383 2.92044 28 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 29 3.46856 0.13448 3.51567 2.73426 29 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 30 3.02313 3.69864 0.10572 3.61510 30 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 31 3.55992 0.11605 3.60383 2.92044 31 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 32 2.94225 2.07204 2.99664 0.25959 32 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 33 3.02313 3.69864 0.10572 3.61510 33 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 34 0.12813 3.49076 2.87327 3.40309 34 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 35 2.82886 3.61528 0.12261 3.52664 35 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 36 3.20158 2.66683 3.24536 0.16149 36 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 37 3.20158 2.66683 3.24536 0.16149 37 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 38 3.20158 2.66683 3.24536 0.16149 38 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 39 0.12813 3.49076 2.87327 3.40309 39 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 40 0.12813 3.49076 2.87327 3.40309 40 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 41 3.02313 3.69864 0.10572 3.61510 41 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 42 3.55992 0.11605 3.60383 2.92044 42 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 43 0.12813 3.49076 2.87327 3.40309 43 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 44 3.20158 2.66683 3.24536 0.16149 44 - - 1.38629 1.38629 1.38629 1.38629 0.03455 4.07572 4.07572 1.46634 0.26236 1.09861 0.40547 45 0.12813 3.49076 2.87327 3.40309 45 - - 1.38629 1.38629 1.38629 1.38629 0.01742 4.05859 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_sixteend_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:16:31 2012 NSEQ 4 EFFN 3.183594 CKSUM 2286681022 STATS LOCAL MSV -8.2107 0.71933 STATS LOCAL VITERBI -7.8128 0.71933 STATS LOCAL FORWARD -3.7084 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40199 1.23646 1.19419 1.82924 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 0.00000 * 1 0.14807 3.33468 2.77222 3.23207 1 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 2 3.04283 2.56598 3.09273 0.18624 2 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 3 2.91546 3.54130 0.12237 3.44120 3 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 4 3.38051 0.13666 3.43217 2.79055 4 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 5 2.91546 3.54130 0.12237 3.44120 5 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 6 0.14807 3.33468 2.77222 3.23207 6 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 7 3.38051 0.13666 3.43217 2.79055 7 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 8 3.38051 0.13666 3.43217 2.79055 8 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 9 3.38051 0.13666 3.43217 2.79055 9 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 10 3.38051 0.13666 3.43217 2.79055 10 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 11 0.14807 3.33468 2.77222 3.23207 11 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 12 2.91546 3.54130 0.12237 3.44120 12 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 13 2.91546 3.54130 0.12237 3.44120 13 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 14 0.14807 3.33468 2.77222 3.23207 14 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 15 3.04283 2.56598 3.09273 0.18624 15 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 16 2.91546 3.54130 0.12237 3.44120 16 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 17 2.91546 3.54130 0.12237 3.44120 17 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 18 2.91546 3.54130 0.12237 3.44120 18 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 19 3.38051 0.13666 3.43217 2.79055 19 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 20 2.91546 3.54130 0.12237 3.44120 20 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 21 0.14807 3.33468 2.77222 3.23207 21 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 22 2.91546 3.54130 0.12237 3.44120 22 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 23 2.91546 3.54130 0.12237 3.44120 23 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 24 3.38051 0.13666 3.43217 2.79055 24 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 25 3.38051 0.13666 3.43217 2.79055 25 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 26 0.14807 3.33468 2.77222 3.23207 26 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 27 3.38051 0.13666 3.43217 2.79055 27 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 28 3.38051 0.13666 3.43217 2.79055 28 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 29 3.38051 0.13666 3.43217 2.79055 29 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 30 2.91546 3.54130 0.12237 3.44120 30 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 31 3.38051 0.13666 3.43217 2.79055 31 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 32 2.60042 0.45814 2.67092 1.49561 32 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 33 2.91546 3.54130 0.12237 3.44120 33 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 34 0.14807 3.33468 2.77222 3.23207 34 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 35 2.91546 3.54130 0.12237 3.44120 35 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 36 3.04283 2.56598 3.09273 0.18624 36 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 37 3.04283 2.56598 3.09273 0.18624 37 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 38 3.04283 2.56598 3.09273 0.18624 38 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 39 0.14807 3.33468 2.77222 3.23207 39 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 40 0.14807 3.33468 2.77222 3.23207 40 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 41 2.91546 3.54130 0.12237 3.44120 41 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 42 3.38051 0.13666 3.43217 2.79055 42 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 43 0.14807 3.33468 2.77222 3.23207 43 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 44 3.04283 2.56598 3.09273 0.18624 44 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98594 3.98594 1.46634 0.26236 1.09861 0.40547 45 0.14807 3.33468 2.77222 3.23207 45 - - 1.38629 1.38629 1.38629 1.38629 0.01911 3.96719 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_tena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:13:56 2012 NSEQ 26 EFFN 3.164307 CKSUM 3165523299 STATS LOCAL MSV -8.2319 0.71931 STATS LOCAL VITERBI -7.4689 0.71931 STATS LOCAL FORWARD -4.1879 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34091 1.26975 1.31625 1.66413 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 0.00000 * 1 3.37302 0.13761 3.42498 2.78504 1 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 2 3.37302 0.13761 3.42498 2.78504 2 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 3 0.14897 3.32819 2.76797 3.22498 3 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 4 3.03635 2.56184 3.08649 0.18734 4 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 5 2.91085 3.53465 0.12314 3.43388 5 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 6 0.14897 3.32819 2.76797 3.22498 6 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 7 3.37302 0.13761 3.42498 2.78504 7 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 8 3.37302 0.13761 3.42498 2.78504 8 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 9 3.03635 2.56184 3.08649 0.18734 9 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 10 3.37302 0.13761 3.42498 2.78504 10 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 11 0.14897 3.32819 2.76797 3.22498 11 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 12 2.91085 3.53465 0.12314 3.43388 12 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 13 0.14897 3.32819 2.76797 3.22498 13 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 14 3.03635 2.56184 3.08649 0.18734 14 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 15 3.37302 0.13761 3.42498 2.78504 15 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 16 0.14897 3.32819 2.76797 3.22498 16 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 17 2.91085 3.53465 0.12314 3.43388 17 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 18 0.14897 3.32819 2.76797 3.22498 18 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 19 3.37302 0.13761 3.42498 2.78504 19 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 20 2.91085 3.53465 0.12314 3.43388 20 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 21 2.91085 3.53465 0.12314 3.43388 21 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 22 2.91085 3.53465 0.12314 3.43388 22 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 23 2.91085 3.53465 0.12314 3.43388 23 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 24 3.37302 0.13761 3.42498 2.78504 24 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 25 2.91085 3.53465 0.12314 3.43388 25 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 26 0.14897 3.32819 2.76797 3.22498 26 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 27 3.37302 0.13761 3.42498 2.78504 27 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 28 3.37302 0.13761 3.42498 2.78504 28 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 29 3.37302 0.13761 3.42498 2.78504 29 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 30 2.91085 3.53465 0.12314 3.43388 30 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 31 3.37302 0.13761 3.42498 2.78504 31 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 32 3.03635 2.56184 3.08649 0.18734 32 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 33 2.91085 3.53465 0.12314 3.43388 33 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 34 0.14897 3.32819 2.76797 3.22498 34 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 35 2.91085 3.53465 0.12314 3.43388 35 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 36 3.03635 2.56184 3.08649 0.18734 36 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 37 3.03635 2.56184 3.08649 0.18734 37 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 38 3.03635 2.56184 3.08649 0.18734 38 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 39 0.14897 3.32819 2.76797 3.22498 39 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 40 0.14897 3.32819 2.76797 3.22498 40 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 41 2.91085 3.53465 0.12314 3.43388 41 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 42 3.37302 0.13761 3.42498 2.78504 42 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 43 0.14897 3.32819 2.76797 3.22498 43 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 44 3.03635 2.56184 3.08649 0.18734 44 - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98235 3.98235 1.46634 0.26236 1.09861 0.40547 45 0.14897 3.32819 2.76797 3.22498 45 - - 1.38629 1.38629 1.38629 1.38629 0.01918 3.96353 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_tenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:14:01 2012 NSEQ 3 EFFN 3.000000 CKSUM 2046295705 STATS LOCAL MSV -7.9249 0.71995 STATS LOCAL VITERBI -7.7263 0.71995 STATS LOCAL FORWARD -3.7672 0.71995 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33690 1.33800 1.25294 1.66437 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.15719 3.27118 2.73043 3.16274 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 0.15719 3.27118 2.73043 3.16274 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.86982 3.47591 0.13017 3.36931 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.86982 3.47591 0.13017 3.36931 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.86982 3.47591 0.13017 3.36931 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.30705 0.14631 3.36166 2.73626 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.15719 3.27118 2.73043 3.16274 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.86982 3.47591 0.13017 3.36931 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.30705 0.14631 3.36166 2.73626 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.86982 3.47591 0.13017 3.36931 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.15719 3.27118 2.73043 3.16274 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.97980 2.52563 3.03204 0.19727 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.97980 2.52563 3.03204 0.19727 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.15719 3.27118 2.73043 3.16274 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.86982 3.47591 0.13017 3.36931 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.97980 2.52563 3.03204 0.19727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.97980 2.52563 3.03204 0.19727 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.86982 3.47591 0.13017 3.36931 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.30705 0.14631 3.36166 2.73626 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 0.15719 3.27118 2.73043 3.16274 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_tenc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:14:06 2012 NSEQ 40 EFFN 3.530273 CKSUM 467818289 STATS LOCAL MSV -7.5640 0.71931 STATS LOCAL VITERBI -7.7188 0.71931 STATS LOCAL FORWARD -4.4311 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.32237 1.45329 1.27317 1.51525 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 0.00000 * 1 2.61303 2.95298 0.25551 2.30275 1 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 2 2.44058 2.33281 0.33394 2.30489 2 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 3 2.65822 2.42613 2.22125 0.31051 3 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 4 2.91618 2.09568 2.97112 0.25925 4 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 5 2.99181 3.65250 0.11032 3.56399 5 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 6 0.13370 3.44448 2.84348 3.35230 6 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 7 3.50695 0.12174 3.55321 2.88245 7 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 8 3.50695 0.12174 3.55321 2.88245 8 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 9 3.15391 2.63661 3.19955 0.16850 9 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 10 3.50695 0.12174 3.55321 2.88245 10 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 11 2.99181 3.65250 0.11032 3.56399 11 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 12 2.99181 3.65250 0.11032 3.56399 12 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 13 0.13370 3.44448 2.84348 3.35230 13 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 14 3.15391 2.63661 3.19955 0.16850 14 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 15 3.50695 0.12174 3.55321 2.88245 15 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 16 0.13370 3.44448 2.84348 3.35230 16 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 17 2.99181 3.65250 0.11032 3.56399 17 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 18 2.36092 3.32322 0.18704 3.21335 18 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 19 3.15391 2.63661 3.19955 0.16850 19 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 20 0.13370 3.44448 2.84348 3.35230 20 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 21 2.99181 3.65250 0.11032 3.56399 21 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 22 2.99181 3.65250 0.11032 3.56399 22 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 23 2.34723 3.31471 0.18943 3.20429 23 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 24 0.13370 3.44448 2.84348 3.35230 24 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 25 3.15391 2.63661 3.19955 0.16850 25 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 26 0.13370 3.44448 2.84348 3.35230 26 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 27 3.50695 0.12174 3.55321 2.88245 27 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 28 3.50695 0.12174 3.55321 2.88245 28 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 29 3.50695 0.12174 3.55321 2.88245 29 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 30 2.99181 3.65250 0.11032 3.56399 30 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 31 3.50695 0.12174 3.55321 2.88245 31 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 32 3.15391 2.63661 3.19955 0.16850 32 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 33 2.99181 3.65250 0.11032 3.56399 33 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 34 0.13370 3.44448 2.84348 3.35230 34 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 35 0.13370 3.44448 2.84348 3.35230 35 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 36 3.50695 0.12174 3.55321 2.88245 36 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 37 3.15391 2.63661 3.19955 0.16850 37 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 38 3.15391 2.63661 3.19955 0.16850 38 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 39 0.13370 3.44448 2.84348 3.35230 39 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 40 0.13370 3.44448 2.84348 3.35230 40 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 41 2.99181 3.65250 0.11032 3.56399 41 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 42 3.50695 0.12174 3.55321 2.88245 42 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 43 0.13370 3.44448 2.84348 3.35230 43 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 44 3.15391 2.63661 3.19955 0.16850 44 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 45 0.13370 3.44448 2.84348 3.35230 45 - - 1.38629 1.38629 1.38629 1.38629 0.01792 4.03074 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_tend_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:14:17 2012 NSEQ 2 EFFN 2.000000 CKSUM 1093890755 STATS LOCAL MSV -7.6566 0.72767 STATS LOCAL VITERBI -8.0882 0.72767 STATS LOCAL FORWARD -3.7441 0.72767 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.28646 1.40926 1.31540 1.55560 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.57915 2.25909 2.64442 0.28946 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_thirteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:15:42 2012 NSEQ 4 EFFN 3.261719 CKSUM 176532526 STATS LOCAL MSV -7.9592 0.71933 STATS LOCAL VITERBI -7.7561 0.71933 STATS LOCAL FORWARD -3.8855 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27518 1.32049 1.37718 1.60284 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 0.00000 * 1 2.58317 1.56516 2.64901 0.43899 1 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 2 0.14453 3.36055 2.78910 3.26035 2 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 3 2.93372 3.56771 0.11938 3.47031 3 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 4 3.41037 0.13295 3.46079 2.81242 4 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 5 2.93372 3.56771 0.11938 3.47031 5 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 6 0.14453 3.36055 2.78910 3.26035 6 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 7 3.41037 0.13295 3.46079 2.81242 7 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 8 3.41037 0.13295 3.46079 2.81242 8 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 9 3.41037 0.13295 3.46079 2.81242 9 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 10 3.41037 0.13295 3.46079 2.81242 10 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 11 0.14453 3.36055 2.78910 3.26035 11 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 12 0.14453 3.36055 2.78910 3.26035 12 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 13 2.93372 3.56771 0.11938 3.47031 13 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 14 3.06875 2.58250 3.11766 0.18191 14 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 15 3.41037 0.13295 3.46079 2.81242 15 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 16 0.14453 3.36055 2.78910 3.26035 16 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 17 2.93372 3.56771 0.11938 3.47031 17 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 18 2.93372 3.56771 0.11938 3.47031 18 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 19 3.06875 2.58250 3.11766 0.18191 19 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 20 2.93372 3.56771 0.11938 3.47031 20 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 21 2.93372 3.56771 0.11938 3.47031 21 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 22 2.93372 3.56771 0.11938 3.47031 22 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 23 0.14453 3.36055 2.78910 3.26035 23 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 24 3.06875 2.58250 3.11766 0.18191 24 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 25 3.06875 2.58250 3.11766 0.18191 25 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 26 0.14453 3.36055 2.78910 3.26035 26 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 27 3.41037 0.13295 3.46079 2.81242 27 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 28 3.41037 0.13295 3.46079 2.81242 28 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 29 3.41037 0.13295 3.46079 2.81242 29 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 30 2.93372 3.56771 0.11938 3.47031 30 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 31 3.41037 0.13295 3.46079 2.81242 31 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 32 3.06875 2.58250 3.11766 0.18191 32 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 33 2.93372 3.56771 0.11938 3.47031 33 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 34 0.14453 3.36055 2.78910 3.26035 34 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 35 0.14453 3.36055 2.78910 3.26035 35 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 36 3.41037 0.13295 3.46079 2.81242 36 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 37 3.06875 2.58250 3.11766 0.18191 37 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 38 3.06875 2.58250 3.11766 0.18191 38 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 39 0.14453 3.36055 2.78910 3.26035 39 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 40 0.14453 3.36055 2.78910 3.26035 40 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 41 2.93372 3.56771 0.11938 3.47031 41 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 42 3.41037 0.13295 3.46079 2.81242 42 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 43 0.14453 3.36055 2.78910 3.26035 43 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 44 3.06875 2.58250 3.11766 0.18191 44 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 45 0.14453 3.36055 2.78910 3.26035 45 - - 1.38629 1.38629 1.38629 1.38629 0.01883 3.98187 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_thirtyfive_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:23:58 2012 NSEQ 2 EFFN 2.000000 CKSUM 2544106313 STATS LOCAL MSV -7.5247 0.72735 STATS LOCAL VITERBI -8.3438 0.72735 STATS LOCAL FORWARD -3.2438 0.72735 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34271 1.30420 1.26361 1.68825 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.23862 2.84929 2.43386 2.70756 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_thirtyfoura_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:23:28 2012 NSEQ 7 EFFN 3.250488 CKSUM 2395428810 STATS LOCAL MSV -8.1586 0.71933 STATS LOCAL VITERBI -7.6661 0.71933 STATS LOCAL FORWARD -4.0423 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.54794 1.23507 1.18567 1.65570 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 0.00000 * 1 3.06506 2.58015 3.11411 0.18252 1 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 2 2.21303 0.60736 1.52252 2.05820 2 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 3 2.93114 3.56396 0.11980 3.46618 3 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 4 3.40613 0.13347 3.45673 2.80932 4 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 5 2.93114 3.56396 0.11980 3.46618 5 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 6 0.14502 3.35687 2.78670 3.25633 6 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 7 3.40613 0.13347 3.45673 2.80932 7 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 8 3.40613 0.13347 3.45673 2.80932 8 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 9 3.06506 2.58015 3.11411 0.18252 9 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 10 3.40613 0.13347 3.45673 2.80932 10 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 11 0.14502 3.35687 2.78670 3.25633 11 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 12 2.93114 3.56396 0.11980 3.46618 12 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 13 2.93114 3.56396 0.11980 3.46618 13 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 14 3.06506 2.58015 3.11411 0.18252 14 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 15 3.40613 0.13347 3.45673 2.80932 15 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 16 0.14502 3.35687 2.78670 3.25633 16 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 17 2.93114 3.56396 0.11980 3.46618 17 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 18 2.93114 3.56396 0.11980 3.46618 18 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 19 3.40613 0.13347 3.45673 2.80932 19 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 20 2.93114 3.56396 0.11980 3.46618 20 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 21 2.93114 3.56396 0.11980 3.46618 21 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 22 2.93114 3.56396 0.11980 3.46618 22 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 23 2.93114 3.56396 0.11980 3.46618 23 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 24 3.40613 0.13347 3.45673 2.80932 24 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 25 3.40613 0.13347 3.45673 2.80932 25 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 26 0.14502 3.35687 2.78670 3.25633 26 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 27 3.40613 0.13347 3.45673 2.80932 27 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 28 3.40613 0.13347 3.45673 2.80932 28 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 29 3.40613 0.13347 3.45673 2.80932 29 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 30 2.93114 3.56396 0.11980 3.46618 30 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 31 3.40613 0.13347 3.45673 2.80932 31 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 32 3.06506 2.58015 3.11411 0.18252 32 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 33 2.93114 3.56396 0.11980 3.46618 33 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 34 0.14502 3.35687 2.78670 3.25633 34 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 35 2.93114 3.56396 0.11980 3.46618 35 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 36 3.06506 2.58015 3.11411 0.18252 36 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 37 3.06506 2.58015 3.11411 0.18252 37 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 38 3.06506 2.58015 3.11411 0.18252 38 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 39 0.14502 3.35687 2.78670 3.25633 39 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 40 0.14502 3.35687 2.78670 3.25633 40 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 41 2.93114 3.56396 0.11980 3.46618 41 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 42 3.40613 0.13347 3.45673 2.80932 42 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 43 0.14502 3.35687 2.78670 3.25633 43 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 44 3.06506 2.58015 3.11411 0.18252 44 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 45 0.14502 3.35687 2.78670 3.25633 45 - - 1.38629 1.38629 1.38629 1.38629 0.01887 3.97977 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_thirtyfourb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:23:36 2012 NSEQ 10 EFFN 3.217773 CKSUM 2888107526 STATS LOCAL MSV -8.1436 0.71933 STATS LOCAL VITERBI -7.6932 0.71933 STATS LOCAL FORWARD -3.8472 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.47619 1.20006 1.25414 1.68743 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 0.00000 * 1 2.51261 1.43333 2.58054 0.50303 1 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 2 3.39368 0.13501 3.44479 2.80020 2 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 3 2.92353 3.55295 0.12104 3.45404 3 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 4 3.39368 0.13501 3.44479 2.80020 4 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 5 2.92353 3.55295 0.12104 3.45404 5 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 6 0.14649 3.34608 2.77966 3.24453 6 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 7 3.39368 0.13501 3.44479 2.80020 7 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 8 3.39368 0.13501 3.44479 2.80020 8 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 9 3.39368 0.13501 3.44479 2.80020 9 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 10 3.39368 0.13501 3.44479 2.80020 10 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 11 0.14649 3.34608 2.77966 3.24453 11 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 12 2.92353 3.55295 0.12104 3.45404 12 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 13 2.92353 3.55295 0.12104 3.45404 13 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 14 3.05424 2.57325 3.10370 0.18432 14 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 15 3.39368 0.13501 3.44479 2.80020 15 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 16 0.14649 3.34608 2.77966 3.24453 16 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 17 2.92353 3.55295 0.12104 3.45404 17 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 18 2.92353 3.55295 0.12104 3.45404 18 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 19 3.39368 0.13501 3.44479 2.80020 19 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 20 2.92353 3.55295 0.12104 3.45404 20 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 21 2.92353 3.55295 0.12104 3.45404 21 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 22 2.92353 3.55295 0.12104 3.45404 22 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 23 0.14649 3.34608 2.77966 3.24453 23 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 24 3.39368 0.13501 3.44479 2.80020 24 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 25 3.05424 2.57325 3.10370 0.18432 25 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 26 0.14649 3.34608 2.77966 3.24453 26 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 27 3.39368 0.13501 3.44479 2.80020 27 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 28 3.39368 0.13501 3.44479 2.80020 28 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 29 3.39368 0.13501 3.44479 2.80020 29 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 30 2.92353 3.55295 0.12104 3.45404 30 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 31 3.39368 0.13501 3.44479 2.80020 31 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 32 3.05424 2.57325 3.10370 0.18432 32 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 33 2.92353 3.55295 0.12104 3.45404 33 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 34 0.14649 3.34608 2.77966 3.24453 34 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 35 2.92353 3.55295 0.12104 3.45404 35 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 36 3.05424 2.57325 3.10370 0.18432 36 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 37 3.05424 2.57325 3.10370 0.18432 37 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 38 3.05424 2.57325 3.10370 0.18432 38 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 39 0.14649 3.34608 2.77966 3.24453 39 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 40 0.14649 3.34608 2.77966 3.24453 40 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 41 2.92353 3.55295 0.12104 3.45404 41 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 42 3.39368 0.13501 3.44479 2.80020 42 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 43 0.14649 3.34608 2.77966 3.24453 43 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 44 3.05424 2.57325 3.10370 0.18432 44 - - 1.38629 1.38629 1.38629 1.38629 0.03761 3.99227 3.99227 1.46634 0.26236 1.09861 0.40547 45 0.14649 3.34608 2.77966 3.24453 45 - - 1.38629 1.38629 1.38629 1.38629 0.01898 3.97364 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_thirtyfourc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:23:43 2012 NSEQ 3 EFFN 3.000000 CKSUM 1235313167 STATS LOCAL MSV -8.2340 0.71993 STATS LOCAL VITERBI -7.8814 0.71993 STATS LOCAL FORWARD -3.8652 0.71993 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40427 1.27422 1.25518 1.66189 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.15719 3.27118 2.73043 3.16274 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.86982 3.47591 0.13017 3.36931 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.86982 3.47591 0.13017 3.36931 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.86982 3.47591 0.13017 3.36931 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.30705 0.14631 3.36166 2.73626 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.15719 3.27118 2.73043 3.16274 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.86982 3.47591 0.13017 3.36931 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.30705 0.14631 3.36166 2.73626 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.86982 3.47591 0.13017 3.36931 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.97980 2.52563 3.03204 0.19727 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.97980 2.52563 3.03204 0.19727 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.15719 3.27118 2.73043 3.16274 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.86982 3.47591 0.13017 3.36931 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.15719 3.27118 2.73043 3.16274 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.97980 2.52563 3.03204 0.19727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.97980 2.52563 3.03204 0.19727 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.86982 3.47591 0.13017 3.36931 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.30705 0.14631 3.36166 2.73626 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 0.15719 3.27118 2.73043 3.16274 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:11:10 2012 NSEQ 4 EFFN 3.214844 CKSUM 1201835928 STATS LOCAL MSV -8.1712 0.71933 STATS LOCAL VITERBI -7.7626 0.71933 STATS LOCAL FORWARD -3.7793 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.47744 1.32559 1.31730 1.43432 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 0.00000 * 1 3.05326 2.57263 3.10276 0.18448 1 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 2 3.05326 2.57263 3.10276 0.18448 2 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 3 2.92285 3.55196 0.12115 3.45295 3 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 4 3.39256 0.13515 3.44371 2.79938 4 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 5 3.05326 2.57263 3.10276 0.18448 5 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 6 0.14663 3.34511 2.77903 3.24347 6 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 7 3.39256 0.13515 3.44371 2.79938 7 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 8 3.39256 0.13515 3.44371 2.79938 8 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 9 3.39256 0.13515 3.44371 2.79938 9 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 10 3.39256 0.13515 3.44371 2.79938 10 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 11 0.14663 3.34511 2.77903 3.24347 11 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 12 2.92285 3.55196 0.12115 3.45295 12 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 13 2.92285 3.55196 0.12115 3.45295 13 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 14 3.05326 2.57263 3.10276 0.18448 14 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 15 3.39256 0.13515 3.44371 2.79938 15 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 16 0.14663 3.34511 2.77903 3.24347 16 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 17 2.92285 3.55196 0.12115 3.45295 17 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 18 2.92285 3.55196 0.12115 3.45295 18 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 19 3.05326 2.57263 3.10276 0.18448 19 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 20 2.92285 3.55196 0.12115 3.45295 20 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 21 2.92285 3.55196 0.12115 3.45295 21 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 22 2.92285 3.55196 0.12115 3.45295 22 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 23 0.14663 3.34511 2.77903 3.24347 23 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 24 3.39256 0.13515 3.44371 2.79938 24 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 25 3.05326 2.57263 3.10276 0.18448 25 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 26 0.14663 3.34511 2.77903 3.24347 26 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 27 3.39256 0.13515 3.44371 2.79938 27 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 28 3.39256 0.13515 3.44371 2.79938 28 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 29 3.39256 0.13515 3.44371 2.79938 29 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 30 2.92285 3.55196 0.12115 3.45295 30 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 31 3.39256 0.13515 3.44371 2.79938 31 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 32 3.05326 2.57263 3.10276 0.18448 32 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 33 2.92285 3.55196 0.12115 3.45295 33 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 34 0.14663 3.34511 2.77903 3.24347 34 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 35 2.92285 3.55196 0.12115 3.45295 35 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 36 3.05326 2.57263 3.10276 0.18448 36 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 37 3.05326 2.57263 3.10276 0.18448 37 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 38 3.05326 2.57263 3.10276 0.18448 38 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 39 0.14663 3.34511 2.77903 3.24347 39 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 40 0.14663 3.34511 2.77903 3.24347 40 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 41 2.92285 3.55196 0.12115 3.45295 41 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 42 3.39256 0.13515 3.44371 2.79938 42 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 43 0.14663 3.34511 2.77903 3.24347 43 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 44 3.05326 2.57263 3.10276 0.18448 44 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 45 0.14663 3.34511 2.77903 3.24347 45 - - 1.38629 1.38629 1.38629 1.38629 0.01899 3.97309 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_twelve_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:15:29 2012 NSEQ 2 EFFN 2.000000 CKSUM 1666626583 STATS LOCAL MSV -7.6335 0.72740 STATS LOCAL VITERBI -8.2106 0.72740 STATS LOCAL FORWARD -3.2591 0.72740 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.52257 1.35418 1.16326 1.55483 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_twenty_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:21:12 2012 NSEQ 3 EFFN 3.000000 CKSUM 458537765 STATS LOCAL MSV -8.1436 0.72004 STATS LOCAL VITERBI -7.6198 0.72004 STATS LOCAL FORWARD -4.1137 0.72004 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40407 1.27131 1.31647 1.58055 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.15719 3.27118 2.73043 3.16274 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.86982 3.47591 0.13017 3.36931 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 0.15719 3.27118 2.73043 3.16274 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.97980 2.52563 3.03204 0.19727 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.86982 3.47591 0.13017 3.36931 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.97980 2.52563 3.03204 0.19727 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 3.30705 0.14631 3.36166 2.73626 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 0.15719 3.27118 2.73043 3.16274 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.86982 3.47591 0.13017 3.36931 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 3.30705 0.14631 3.36166 2.73626 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.97980 2.52563 3.03204 0.19727 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 0.15719 3.27118 2.73043 3.16274 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 3.30705 0.14631 3.36166 2.73626 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.86982 3.47591 0.13017 3.36931 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 0.15719 3.27118 2.73043 3.16274 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.97980 2.52563 3.03204 0.19727 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.97980 2.52563 3.03204 0.19727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 0.15719 3.27118 2.73043 3.16274 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 0.15719 3.27118 2.73043 3.16274 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 3.30705 0.14631 3.36166 2.73626 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.15719 3.27118 2.73043 3.16274 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.97980 2.52563 3.03204 0.19727 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_twentyeight_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:23:03 2012 NSEQ 4 EFFN 3.097656 CKSUM 2353773636 STATS LOCAL MSV -8.2199 0.71933 STATS LOCAL VITERBI -7.8312 0.71933 STATS LOCAL FORWARD -3.6832 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40516 1.22130 1.19741 1.84611 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 0.00000 * 1 0.15219 3.30544 2.75304 3.20013 1 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 2 3.01370 2.54736 3.06469 0.19124 2 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 3 2.89459 3.51128 0.12588 3.40817 3 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 4 3.34671 0.14101 3.39974 2.76565 4 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 5 2.89459 3.51128 0.12588 3.40817 5 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 6 0.15219 3.30544 2.75304 3.20013 6 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 7 3.34671 0.14101 3.39974 2.76565 7 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 8 3.34671 0.14101 3.39974 2.76565 8 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 9 3.34671 0.14101 3.39974 2.76565 9 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 10 3.34671 0.14101 3.39974 2.76565 10 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 11 0.15219 3.30544 2.75304 3.20013 11 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 12 2.89459 3.51128 0.12588 3.40817 12 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 13 2.89459 3.51128 0.12588 3.40817 13 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 14 0.15219 3.30544 2.75304 3.20013 14 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 15 3.01370 2.54736 3.06469 0.19124 15 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 16 2.89459 3.51128 0.12588 3.40817 16 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 17 2.89459 3.51128 0.12588 3.40817 17 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 18 2.89459 3.51128 0.12588 3.40817 18 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 19 3.34671 0.14101 3.39974 2.76565 19 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 20 2.89459 3.51128 0.12588 3.40817 20 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 21 0.15219 3.30544 2.75304 3.20013 21 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 22 2.89459 3.51128 0.12588 3.40817 22 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 23 2.89459 3.51128 0.12588 3.40817 23 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 24 3.34671 0.14101 3.39974 2.76565 24 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 25 3.34671 0.14101 3.39974 2.76565 25 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 26 0.15219 3.30544 2.75304 3.20013 26 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 27 3.34671 0.14101 3.39974 2.76565 27 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 28 3.34671 0.14101 3.39974 2.76565 28 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 29 3.34671 0.14101 3.39974 2.76565 29 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 30 2.89459 3.51128 0.12588 3.40817 30 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 31 3.34671 0.14101 3.39974 2.76565 31 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 32 3.34671 0.14101 3.39974 2.76565 32 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 33 2.89459 3.51128 0.12588 3.40817 33 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 34 0.15219 3.30544 2.75304 3.20013 34 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 35 2.89459 3.51128 0.12588 3.40817 35 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 36 3.01370 2.54736 3.06469 0.19124 36 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 37 3.01370 2.54736 3.06469 0.19124 37 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 38 3.01370 2.54736 3.06469 0.19124 38 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 39 0.15219 3.30544 2.75304 3.20013 39 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 40 0.15219 3.30544 2.75304 3.20013 40 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 41 2.89459 3.51128 0.12588 3.40817 41 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 42 3.34671 0.14101 3.39974 2.76565 42 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 43 0.15219 3.30544 2.75304 3.20013 43 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 44 3.01370 2.54736 3.06469 0.19124 44 - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 45 0.15219 3.30544 2.75304 3.20013 45 - - 1.38629 1.38629 1.38629 1.38629 0.01943 3.95079 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_twentyfive_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:22:33 2012 NSEQ 6 EFFN 3.284180 CKSUM 3558168622 STATS LOCAL MSV -8.0853 0.71933 STATS LOCAL VITERBI -7.5841 0.71933 STATS LOCAL FORWARD -3.7451 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.28014 1.32058 1.61205 1.36437 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 0.00000 * 1 3.07610 2.58718 3.12474 0.18071 1 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 2 3.07610 2.58718 3.12474 0.18071 2 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 3 3.07610 2.58718 3.12474 0.18071 3 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 4 3.07610 2.58718 3.12474 0.18071 4 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 5 2.93885 3.57515 0.11855 3.47852 5 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 6 0.14354 3.36786 2.79386 3.26835 6 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 7 3.41881 0.13193 3.46887 2.81857 7 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 8 3.41881 0.13193 3.46887 2.81857 8 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 9 3.07610 2.58718 3.12474 0.18071 9 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 10 3.41881 0.13193 3.46887 2.81857 10 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 11 0.14354 3.36786 2.79386 3.26835 11 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 12 2.93885 3.57515 0.11855 3.47852 12 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 13 3.07610 2.58718 3.12474 0.18071 13 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 14 3.07610 2.58718 3.12474 0.18071 14 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 15 3.41881 0.13193 3.46887 2.81857 15 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 16 0.14354 3.36786 2.79386 3.26835 16 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 17 2.93885 3.57515 0.11855 3.47852 17 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 18 0.14354 3.36786 2.79386 3.26835 18 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 19 3.41881 0.13193 3.46887 2.81857 19 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 20 0.14354 3.36786 2.79386 3.26835 20 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 21 0.14354 3.36786 2.79386 3.26835 21 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 22 2.93885 3.57515 0.11855 3.47852 22 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 23 2.93885 3.57515 0.11855 3.47852 23 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 24 3.41881 0.13193 3.46887 2.81857 24 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 25 3.07610 2.58718 3.12474 0.18071 25 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 26 0.14354 3.36786 2.79386 3.26835 26 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 27 3.41881 0.13193 3.46887 2.81857 27 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 28 3.41881 0.13193 3.46887 2.81857 28 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 29 3.41881 0.13193 3.46887 2.81857 29 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 30 2.93885 3.57515 0.11855 3.47852 30 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 31 3.41881 0.13193 3.46887 2.81857 31 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 32 3.41881 0.13193 3.46887 2.81857 32 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 33 2.93885 3.57515 0.11855 3.47852 33 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 34 0.14354 3.36786 2.79386 3.26835 34 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 35 0.14354 3.36786 2.79386 3.26835 35 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 36 3.07610 2.58718 3.12474 0.18071 36 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 37 3.07610 2.58718 3.12474 0.18071 37 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 38 3.07610 2.58718 3.12474 0.18071 38 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 39 0.14354 3.36786 2.79386 3.26835 39 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 40 0.14354 3.36786 2.79386 3.26835 40 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 41 2.93885 3.57515 0.11855 3.47852 41 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 42 3.41881 0.13193 3.46887 2.81857 42 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 43 0.14354 3.36786 2.79386 3.26835 43 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 44 3.07610 2.58718 3.12474 0.18071 44 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00445 4.00445 1.46634 0.26236 1.09861 0.40547 45 0.14354 3.36786 2.79386 3.26835 45 - - 1.38629 1.38629 1.38629 1.38629 0.01875 3.98605 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_twentyfour_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:22:20 2012 NSEQ 2 EFFN 2.000000 CKSUM 585099399 STATS LOCAL MSV -7.5304 0.72797 STATS LOCAL VITERBI -8.2378 0.72797 STATS LOCAL FORWARD -3.2800 0.72797 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34335 1.39907 1.37294 1.43195 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.23862 2.84929 2.43386 2.70756 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.57915 2.25909 2.64442 0.28946 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_twentynine_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:23:14 2012 NSEQ 2 EFFN 2.000000 CKSUM 948472287 STATS LOCAL MSV -7.5165 0.72789 STATS LOCAL VITERBI -8.3237 0.72789 STATS LOCAL FORWARD -3.1789 0.72789 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.31998 1.30160 1.25870 1.73307 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.23862 2.84929 2.43386 2.70756 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.53331 3.02441 0.20344 2.88069 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 1.03732 1.95876 1.96551 1.00928 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_twentyseven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:22:53 2012 NSEQ 2 EFFN 2.000000 CKSUM 3585155037 STATS LOCAL MSV -7.6411 0.72790 STATS LOCAL VITERBI -8.1958 0.72790 STATS LOCAL FORWARD -3.1897 0.72790 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.43267 1.24706 1.24508 1.68167 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.92825 2.28391 0.95698 2.13014 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_twentysix_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:22:44 2012 NSEQ 7 EFFN 3.216309 CKSUM 3292637804 STATS LOCAL MSV -8.0713 0.71932 STATS LOCAL VITERBI -7.7834 0.71932 STATS LOCAL FORWARD -4.0416 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.16267 1.39809 1.44531 1.58666 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 0.00000 * 1 0.14656 3.34560 2.77935 3.24400 1 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 2 2.92319 3.55246 0.12110 3.45350 2 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 3 3.39312 0.13508 3.44425 2.79979 3 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 4 0.14656 3.34560 2.77935 3.24400 4 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 5 2.92319 3.55246 0.12110 3.45350 5 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 6 0.14656 3.34560 2.77935 3.24400 6 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 7 3.39312 0.13508 3.44425 2.79979 7 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 8 3.39312 0.13508 3.44425 2.79979 8 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 9 3.05375 2.57294 3.10323 0.18440 9 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 10 3.39312 0.13508 3.44425 2.79979 10 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 11 3.05375 2.57294 3.10323 0.18440 11 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 12 2.92319 3.55246 0.12110 3.45350 12 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 13 0.14656 3.34560 2.77935 3.24400 13 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 14 3.05375 2.57294 3.10323 0.18440 14 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 15 3.39312 0.13508 3.44425 2.79979 15 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 16 0.14656 3.34560 2.77935 3.24400 16 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 17 2.92319 3.55246 0.12110 3.45350 17 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 18 2.92319 3.55246 0.12110 3.45350 18 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 19 0.14656 3.34560 2.77935 3.24400 19 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 20 0.14656 3.34560 2.77935 3.24400 20 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 21 0.14656 3.34560 2.77935 3.24400 21 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 22 2.92319 3.55246 0.12110 3.45350 22 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 23 0.14656 3.34560 2.77935 3.24400 23 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 24 3.39312 0.13508 3.44425 2.79979 24 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 25 3.05375 2.57294 3.10323 0.18440 25 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 26 0.14656 3.34560 2.77935 3.24400 26 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 27 3.39312 0.13508 3.44425 2.79979 27 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 28 3.39312 0.13508 3.44425 2.79979 28 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 29 3.39312 0.13508 3.44425 2.79979 29 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 30 2.92319 3.55246 0.12110 3.45350 30 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 31 3.39312 0.13508 3.44425 2.79979 31 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 32 3.05375 2.57294 3.10323 0.18440 32 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 33 2.92319 3.55246 0.12110 3.45350 33 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 34 0.14656 3.34560 2.77935 3.24400 34 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 35 2.92319 3.55246 0.12110 3.45350 35 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 36 3.05375 2.57294 3.10323 0.18440 36 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 37 3.05375 2.57294 3.10323 0.18440 37 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 38 3.05375 2.57294 3.10323 0.18440 38 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 39 0.14656 3.34560 2.77935 3.24400 39 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 40 0.14656 3.34560 2.77935 3.24400 40 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 41 2.92319 3.55246 0.12110 3.45350 41 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 42 3.39312 0.13508 3.44425 2.79979 42 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 43 0.14656 3.34560 2.77935 3.24400 43 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 44 3.05375 2.57294 3.10323 0.18440 44 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 45 0.14656 3.34560 2.77935 3.24400 45 - - 1.38629 1.38629 1.38629 1.38629 0.01899 3.97336 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_twentythree_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:21:38 2012 NSEQ 5 EFFN 3.139648 CKSUM 4105697300 STATS LOCAL MSV -8.2688 0.71933 STATS LOCAL VITERBI -7.5622 0.71933 STATS LOCAL FORWARD -4.0037 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40230 1.33627 1.19527 1.66852 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 0.00000 * 1 0.15014 3.31984 2.76249 3.21585 1 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 2 3.36335 0.13885 3.41571 2.77793 2 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 3 2.90489 3.52608 0.12414 3.42445 3 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 4 0.15014 3.31984 2.76249 3.21585 4 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 5 2.90489 3.52608 0.12414 3.42445 5 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 6 0.15014 3.31984 2.76249 3.21585 6 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 7 3.36335 0.13885 3.41571 2.77793 7 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 8 3.36335 0.13885 3.41571 2.77793 8 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 9 3.02802 2.55652 3.07847 0.18876 9 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 10 3.36335 0.13885 3.41571 2.77793 10 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 11 0.15014 3.31984 2.76249 3.21585 11 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 12 2.90489 3.52608 0.12414 3.42445 12 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 13 2.90489 3.52608 0.12414 3.42445 13 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 14 3.02802 2.55652 3.07847 0.18876 14 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 15 3.36335 0.13885 3.41571 2.77793 15 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 16 0.15014 3.31984 2.76249 3.21585 16 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 17 2.90489 3.52608 0.12414 3.42445 17 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 18 2.90489 3.52608 0.12414 3.42445 18 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 19 3.36335 0.13885 3.41571 2.77793 19 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 20 2.90489 3.52608 0.12414 3.42445 20 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 21 2.90489 3.52608 0.12414 3.42445 21 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 22 2.90489 3.52608 0.12414 3.42445 22 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 23 2.90489 3.52608 0.12414 3.42445 23 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 24 3.36335 0.13885 3.41571 2.77793 24 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 25 3.02802 2.55652 3.07847 0.18876 25 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 26 0.15014 3.31984 2.76249 3.21585 26 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 27 3.36335 0.13885 3.41571 2.77793 27 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 28 3.36335 0.13885 3.41571 2.77793 28 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 29 3.36335 0.13885 3.41571 2.77793 29 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 30 2.90489 3.52608 0.12414 3.42445 30 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 31 3.36335 0.13885 3.41571 2.77793 31 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 32 3.02802 2.55652 3.07847 0.18876 32 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 33 2.90489 3.52608 0.12414 3.42445 33 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 34 0.15014 3.31984 2.76249 3.21585 34 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 35 2.90489 3.52608 0.12414 3.42445 35 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 36 3.02802 2.55652 3.07847 0.18876 36 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 37 3.02802 2.55652 3.07847 0.18876 37 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 38 3.02802 2.55652 3.07847 0.18876 38 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 39 0.15014 3.31984 2.76249 3.21585 39 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 40 0.15014 3.31984 2.76249 3.21585 40 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 41 2.90489 3.52608 0.12414 3.42445 41 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 42 3.36335 0.13885 3.41571 2.77793 42 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 43 0.15014 3.31984 2.76249 3.21585 43 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 44 3.02802 2.55652 3.07847 0.18876 44 - - 1.38629 1.38629 1.38629 1.38629 0.03818 3.97775 3.97775 1.46634 0.26236 1.09861 0.40547 45 0.15014 3.31984 2.76249 3.21585 45 - - 1.38629 1.38629 1.38629 1.38629 0.01927 3.95884 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_twentytwo_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:21:30 2012 NSEQ 416 EFFN 3.373779 CKSUM 2904155972 STATS LOCAL MSV -7.7211 0.71932 STATS LOCAL VITERBI -7.7573 0.71932 STATS LOCAL FORWARD -3.6591 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.47008 1.14522 1.31744 1.69217 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 0.00000 * 1 3.34205 0.14440 3.28352 2.78709 1 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 2 3.39278 0.14047 3.44316 2.72615 2 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 3 2.81506 3.53865 0.12892 3.44198 3 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 4 3.38510 0.14215 3.43572 2.71163 4 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 5 2.83375 3.54759 0.12702 3.45142 5 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 6 0.13977 3.39648 2.81245 3.29969 6 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 7 3.45179 0.12800 3.50045 2.84258 7 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 8 3.45179 0.12800 3.50045 2.84258 8 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 9 3.45179 0.12800 3.50045 2.84258 9 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 10 3.31724 0.15759 3.37000 2.58813 10 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 11 0.13977 3.39648 2.81245 3.29969 11 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 12 2.95881 3.60419 0.11538 3.51057 12 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 13 2.95881 3.60419 0.11538 3.51057 13 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 14 3.10501 2.60557 3.15254 0.17606 14 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 15 3.20439 0.14712 3.37927 2.77820 15 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 16 0.13977 3.39648 2.81245 3.29969 16 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 17 2.95881 3.60419 0.11538 3.51057 17 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 18 2.55105 2.36340 2.08619 0.35134 18 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 19 3.45179 0.12800 3.50045 2.84258 19 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 20 2.76420 3.51369 0.13430 3.41557 20 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 21 2.95881 3.60419 0.11538 3.51057 21 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 22 2.95881 3.60419 0.11538 3.51057 22 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 23 0.13977 3.39648 2.81245 3.29969 23 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 24 3.45179 0.12800 3.50045 2.84258 24 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 25 2.63795 1.62383 2.70236 0.40902 25 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 26 0.13977 3.39648 2.81245 3.29969 26 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 27 3.45179 0.12800 3.50045 2.84258 27 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 28 3.45179 0.12800 3.50045 2.84258 28 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 29 3.45179 0.12800 3.50045 2.84258 29 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 30 2.95881 3.60419 0.11538 3.51057 30 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 31 3.45179 0.12800 3.50045 2.84258 31 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 32 3.10501 2.60557 3.15254 0.17606 32 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 33 2.83237 3.47661 0.13647 3.27592 33 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 34 0.13977 3.39648 2.81245 3.29969 34 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 35 2.59736 3.42566 0.15441 3.32199 35 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 36 3.10501 2.60557 3.15254 0.17606 36 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 37 3.10501 2.60557 3.15254 0.17606 37 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 38 3.10501 2.60557 3.15254 0.17606 38 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 39 0.13977 3.39648 2.81245 3.29969 39 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 40 0.13977 3.39648 2.81245 3.29969 40 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 41 2.95881 3.60419 0.11538 3.51057 41 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 42 3.45179 0.12800 3.50045 2.84258 42 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 43 0.13977 3.39648 2.81245 3.29969 43 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 44 3.10501 2.60557 3.15254 0.17606 44 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02066 4.02066 1.46634 0.26236 1.09861 0.40547 45 0.13977 3.39648 2.81245 3.29969 45 - - 1.38629 1.38629 1.38629 1.38629 0.01844 4.00255 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Tracheophyta_4_LSU_start_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Feb 19 00:11:02 2012 NSEQ 88 EFFN 3.730225 CKSUM 289705699 STATS LOCAL MSV -7.0698 0.71932 STATS LOCAL VITERBI -7.7391 0.71932 STATS LOCAL FORWARD -3.8541 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.47805 1.22403 1.23030 1.68378 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 0.00000 * 1 1.27419 1.16179 2.07688 1.26551 1 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 2 2.28831 0.85829 2.43975 0.94806 2 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 3 3.03087 3.71007 0.10461 3.62777 3 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 4 3.57309 0.11469 3.61641 2.92985 4 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 5 3.03087 3.71007 0.10461 3.62777 5 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 6 0.12678 3.50230 2.88068 3.41576 6 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 7 3.57309 0.11469 3.61641 2.92985 7 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 8 3.57309 0.11469 3.61641 2.92985 8 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 9 3.57309 0.11469 3.61641 2.92985 9 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 10 3.57309 0.11469 3.61641 2.92985 10 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 11 0.12678 3.50230 2.88068 3.41576 11 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 12 3.03087 3.71007 0.10461 3.62777 12 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 13 3.03087 3.71007 0.10461 3.62777 13 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 14 3.21354 2.67441 3.25685 0.15978 14 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 15 3.48081 0.13319 3.52743 2.74053 15 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 16 0.12678 3.50230 2.88068 3.41576 16 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 17 3.03087 3.71007 0.10461 3.62777 17 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 18 2.59203 3.50425 0.14857 3.40749 18 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 19 3.48923 0.13143 3.53554 2.75682 19 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 20 2.86666 3.64130 0.11844 3.55481 20 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 21 3.03087 3.71007 0.10461 3.62777 21 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 22 3.03087 3.71007 0.10461 3.62777 22 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 23 0.65536 2.61447 1.12942 2.47315 23 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 24 3.11117 0.23074 3.17034 2.12428 24 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 25 3.13072 2.46267 3.17737 0.18704 25 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 26 0.12678 3.50230 2.88068 3.41576 26 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 27 3.57309 0.11469 3.61641 2.92985 27 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 28 3.57309 0.11469 3.61641 2.92985 28 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 29 3.57309 0.11469 3.61641 2.92985 29 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 30 3.03087 3.71007 0.10461 3.62777 30 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 31 3.57309 0.11469 3.61641 2.92985 31 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 32 3.21354 2.67441 3.25685 0.15978 32 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 33 3.03087 3.71007 0.10461 3.62777 33 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 34 0.12678 3.50230 2.88068 3.41576 34 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 35 2.52711 3.46798 0.15725 3.36850 35 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 36 3.21354 2.67441 3.25685 0.15978 36 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 37 3.21354 2.67441 3.25685 0.15978 37 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 38 3.21354 2.67441 3.25685 0.15978 38 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 39 0.12678 3.50230 2.88068 3.41576 39 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 40 0.12678 3.50230 2.88068 3.41576 40 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 41 3.03087 3.71007 0.10461 3.62777 41 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 42 3.57309 0.11469 3.61641 2.92985 42 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 43 0.12678 3.50230 2.88068 3.41576 43 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 44 3.21354 2.67441 3.25685 0.15978 44 - - 1.38629 1.38629 1.38629 1.38629 0.03431 4.08265 4.08265 1.46634 0.26236 1.09861 0.40547 45 0.12678 3.50230 2.88068 3.41576 45 - - 1.38629 1.38629 1.38629 1.38629 0.01730 4.06564 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Tracheophyta_1_SSU_end_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Feb 16 22:45:55 2012 NSEQ 2465 EFFN 3.455687 CKSUM 1242947486 STATS LOCAL MSV -7.7138 0.71931 STATS LOCAL VITERBI -7.6652 0.71931 STATS LOCAL FORWARD -4.0912 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.32651 1.63232 1.19484 1.44236 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 0.00000 * 1 0.13651 3.42193 2.82892 3.32757 1 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 2 2.87155 3.58379 0.12201 3.49072 2 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 3 3.13087 2.62199 3.17740 0.17201 3 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 4 3.34613 0.14711 3.30399 2.73574 4 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 5 2.74125 3.52096 0.13541 3.42407 5 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 6 3.13087 2.62199 3.17740 0.17201 6 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 7 0.13651 3.42193 2.82892 3.32757 7 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 8 0.14488 3.38910 2.74880 3.29341 8 - - 1.38629 1.38629 1.38629 1.38629 0.03618 4.03525 4.02567 1.46634 0.26236 1.09861 0.40547 9 3.48072 0.12467 3.52813 2.86353 9 - - 1.38629 1.38629 1.38629 1.38629 0.03601 4.03508 4.03508 1.46634 0.26236 1.09223 0.40867 10 0.13651 3.42193 2.82892 3.32757 10 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 11 0.13651 3.42193 2.82892 3.32757 11 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 12 2.97637 3.62986 0.11266 3.53894 12 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 13 2.97637 3.62986 0.11266 3.53894 13 - - 1.38629 1.38629 1.38629 1.38629 0.03635 4.03525 4.01630 1.46634 0.26236 1.09861 0.40547 14 3.13027 2.62161 3.17682 0.17211 14 - - 1.38629 1.38629 1.38629 1.38629 0.03602 4.03492 4.03492 1.46634 0.26236 1.08601 0.41182 15 3.05631 2.43793 3.10554 0.19748 15 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 16 2.95149 2.59145 3.10049 0.18898 16 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.03525 4.00658 1.46634 0.26236 1.09861 0.40547 17 3.32248 0.15921 3.37495 2.56524 17 - - 1.38629 1.38629 1.38629 1.38629 0.03602 4.03474 4.03474 1.46634 0.26236 1.07959 0.41511 18 3.37735 0.14191 3.35769 2.75915 18 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 19 2.83503 3.44657 0.13154 3.42087 19 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 20 3.09420 2.52888 3.14200 0.18423 20 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 21 0.13651 3.42193 2.82892 3.32757 21 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 22 2.97637 3.62986 0.11266 3.53894 22 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 23 2.87064 3.53577 0.12816 3.36711 23 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 24 3.04630 2.59008 2.98834 0.18985 24 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 25 2.93777 3.43823 0.12432 3.44838 25 - - 1.38629 1.38629 1.38629 1.38629 0.04076 4.03525 3.80511 1.46634 0.26236 1.09861 0.40547 26 0.13752 3.41397 2.82377 3.31885 26 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03067 4.03067 1.46634 0.26236 0.95121 0.48820 27 0.15869 3.24292 2.74030 3.14323 27 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.03525 3.98862 1.46634 0.26236 1.09861 0.40547 28 3.47937 0.12482 3.52685 2.86256 28 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03441 4.03441 1.46634 0.26236 1.06776 0.42125 29 3.42591 0.13605 3.47498 2.75322 29 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 30 3.13087 2.62199 3.17740 0.17201 30 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 31 2.88935 3.59189 0.12034 3.49926 31 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 32 3.38192 0.14107 3.36424 2.76456 32 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 33 2.72561 3.35497 0.14585 3.34395 33 - - 1.38629 1.38629 1.38629 1.38629 0.04050 4.03525 3.81647 1.46634 0.26236 1.09861 0.40547 34 2.73371 3.51155 0.13667 3.41384 34 - - 1.38629 1.38629 1.38629 1.38629 0.03777 4.03092 3.94736 1.46634 0.26236 0.96596 0.47903 35 0.13689 3.41896 2.82700 3.32431 35 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03354 4.03354 1.46634 0.26236 1.03799 0.43722 36 0.16310 3.32144 2.59676 3.22186 36 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 37 2.97637 3.62986 0.11266 3.53894 37 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 38 2.88935 3.59189 0.12034 3.49926 38 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 39 0.13651 3.42193 2.82892 3.32757 39 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 40 3.13087 2.62199 3.17740 0.17201 40 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 41 3.28730 0.13857 3.43663 2.81560 41 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 42 0.14508 3.38831 2.74693 3.29259 42 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 43 3.13087 2.62199 3.17740 0.17201 43 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 44 3.10129 2.54646 3.14883 0.18182 44 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03525 4.03525 1.46634 0.26236 1.09861 0.40547 45 2.62394 3.31301 0.16145 3.21467 45 - - 1.38629 1.38629 1.38629 1.38629 0.01816 4.01742 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Tracheophyta_1_SSU_end_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Feb 16 22:45:45 2012 NSEQ 3 EFFN 3.000000 CKSUM 1668200381 STATS LOCAL MSV -8.0335 0.72044 STATS LOCAL VITERBI -7.6660 0.72044 STATS LOCAL FORWARD -4.1391 0.72044 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27287 1.70168 1.30718 1.32045 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.15719 3.27118 2.73043 3.16274 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.97980 2.52563 3.03204 0.19727 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.97980 2.52563 3.03204 0.19727 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 0.15719 3.27118 2.73043 3.16274 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.15719 3.27118 2.73043 3.16274 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 0.15719 3.27118 2.73043 3.16274 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.86982 3.47591 0.13017 3.36931 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.86982 3.47591 0.13017 3.36931 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 0.15719 3.27118 2.73043 3.16274 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.97980 2.52563 3.03204 0.19727 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.97980 2.52563 3.03204 0.19727 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.15719 3.27118 2.73043 3.16274 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.97980 2.52563 3.03204 0.19727 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.15719 3.27118 2.73043 3.16274 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 0.15719 3.27118 2.73043 3.16274 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.86982 3.47591 0.13017 3.36931 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.15719 3.27118 2.73043 3.16274 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.97980 2.52563 3.03204 0.19727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.86982 3.47591 0.13017 3.36931 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.97980 2.52563 3.03204 0.19727 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.97980 2.52563 3.03204 0.19727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Tracheophyta_1_SSU_end_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Feb 16 22:45:21 2012 NSEQ 2 EFFN 2.000000 CKSUM 3520144163 STATS LOCAL MSV -7.4050 0.72803 STATS LOCAL VITERBI -8.4014 0.72803 STATS LOCAL FORWARD -3.3486 0.72803 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.23215 1.67157 1.30831 1.38588 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.57915 2.25909 2.64442 0.28946 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.23862 2.84929 2.43386 2.70756 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.57915 2.25909 2.64442 0.28946 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.23862 2.84929 2.43386 2.70756 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.53331 3.02441 0.20344 2.88069 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.53331 3.02441 0.20344 2.88069 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Tracheophyta_1_SSU_end_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Feb 16 22:45:36 2012 NSEQ 4 EFFN 3.269531 CKSUM 1893084359 STATS LOCAL MSV -8.0441 0.71933 STATS LOCAL VITERBI -7.6633 0.71933 STATS LOCAL FORWARD -4.3760 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34926 1.54473 1.18124 1.51276 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 0.00000 * 1 0.14418 3.36310 2.79076 3.26314 1 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 2 2.93551 3.57031 0.11909 3.47317 2 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 3 3.07131 2.58413 3.12013 0.18149 3 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 4 3.41331 0.13259 3.46361 2.81457 4 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 5 2.93551 3.57031 0.11909 3.47317 5 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 6 3.07131 2.58413 3.12013 0.18149 6 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 7 0.14418 3.36310 2.79076 3.26314 7 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 8 0.14418 3.36310 2.79076 3.26314 8 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 9 3.41331 0.13259 3.46361 2.81457 9 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 10 0.14418 3.36310 2.79076 3.26314 10 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 11 0.14418 3.36310 2.79076 3.26314 11 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 12 2.93551 3.57031 0.11909 3.47317 12 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 13 2.93551 3.57031 0.11909 3.47317 13 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 14 3.07131 2.58413 3.12013 0.18149 14 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 15 3.41331 0.13259 3.46361 2.81457 15 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 16 3.07131 2.58413 3.12013 0.18149 16 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 17 3.41331 0.13259 3.46361 2.81457 17 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 18 3.41331 0.13259 3.46361 2.81457 18 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 19 2.93551 3.57031 0.11909 3.47317 19 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 20 3.07131 2.58413 3.12013 0.18149 20 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 21 3.07131 2.58413 3.12013 0.18149 21 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 22 2.93551 3.57031 0.11909 3.47317 22 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 23 2.93551 3.57031 0.11909 3.47317 23 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 24 3.07131 2.58413 3.12013 0.18149 24 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 25 2.93551 3.57031 0.11909 3.47317 25 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 26 0.14418 3.36310 2.79076 3.26314 26 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 27 0.14418 3.36310 2.79076 3.26314 27 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 28 3.41331 0.13259 3.46361 2.81457 28 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 29 3.41331 0.13259 3.46361 2.81457 29 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 30 0.40008 2.74926 1.64707 2.61530 30 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 31 2.93551 3.57031 0.11909 3.47317 31 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 32 3.41331 0.13259 3.46361 2.81457 32 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 33 2.93551 3.57031 0.11909 3.47317 33 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 34 2.93551 3.57031 0.11909 3.47317 34 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 35 0.14418 3.36310 2.79076 3.26314 35 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 36 2.93551 3.57031 0.11909 3.47317 36 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 37 2.93551 3.57031 0.11909 3.47317 37 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 38 2.93551 3.57031 0.11909 3.47317 38 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 39 0.14418 3.36310 2.79076 3.26314 39 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 40 3.07131 2.58413 3.12013 0.18149 40 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 41 3.41331 0.13259 3.46361 2.81457 41 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 42 0.14418 3.36310 2.79076 3.26314 42 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 43 3.07131 2.58413 3.12013 0.18149 43 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 44 3.07131 2.58413 3.12013 0.18149 44 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 45 0.14418 3.36310 2.79076 3.26314 45 - - 1.38629 1.38629 1.38629 1.38629 0.01880 3.98333 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Tracheophyta_1_SSU_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Feb 16 22:45:28 2012 NSEQ 2 EFFN 2.000000 CKSUM 3574096921 STATS LOCAL MSV -7.4187 0.72775 STATS LOCAL VITERBI -8.3649 0.72775 STATS LOCAL FORWARD -3.4400 0.72775 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.51814 1.52829 1.15981 1.38459 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.57915 2.25909 2.64442 0.28946 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.57915 2.25909 2.64442 0.28946 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.23862 2.84929 2.43386 2.70756 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.53331 3.02441 0.20344 2.88069 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.53331 3.02441 0.20344 2.88069 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //