Mercurial > repos > okorol > itsx
view ITSx_db/HMMs/U.hmm @ 4:2986d8c4db11 draft
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| author | okorol |
|---|---|
| date | Thu, 04 Jun 2015 12:05:10 -0400 |
| parents | f82c70f54bd7 |
| children |
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HMMER3/b [3.0 | March 2010] NAME 3_End_Eustigmatophyceae_58S_end_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Sep 25 01:39:32 2011 NSEQ 6 EFFN 3.336914 CKSUM 3393550359 STATS LOCAL MSV -8.0163 0.71932 STATS LOCAL VITERBI -7.6944 0.71932 STATS LOCAL FORWARD -4.0151 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.93226 1.59605 1.19721 1.04854 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 0.00000 * 1 3.43835 0.12958 3.48758 2.83281 1 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 2 2.95070 3.59237 0.11666 3.49752 2 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 3 3.43835 0.12958 3.48758 2.83281 3 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 4 3.09320 2.59806 3.14118 0.17794 4 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 5 3.09320 2.59806 3.14118 0.17794 5 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 6 3.09320 2.59806 3.14118 0.17794 6 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 7 3.43835 0.12958 3.48758 2.83281 7 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 8 2.95070 3.59237 0.11666 3.49752 8 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 9 2.95070 3.59237 0.11666 3.49752 9 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 10 2.95070 3.59237 0.11666 3.49752 10 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 11 0.14130 3.38481 2.80488 3.28690 11 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 12 3.09320 2.59806 3.14118 0.17794 12 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 13 0.14130 3.38481 2.80488 3.28690 13 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 14 3.09320 2.59806 3.14118 0.17794 14 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 15 2.95070 3.59237 0.11666 3.49752 15 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 16 3.43835 0.12958 3.48758 2.83281 16 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 17 3.43835 0.12958 3.48758 2.83281 17 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 18 3.43835 0.12958 3.48758 2.83281 18 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 19 2.95070 3.59237 0.11666 3.49752 19 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 20 3.09320 2.59806 3.14118 0.17794 20 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 21 3.09320 2.59806 3.14118 0.17794 21 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 22 0.14130 3.38481 2.80488 3.28690 22 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 23 2.95070 3.59237 0.11666 3.49752 23 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 24 3.43835 0.12958 3.48758 2.83281 24 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 25 0.14130 3.38481 2.80488 3.28690 25 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 26 3.09320 2.59806 3.14118 0.17794 26 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 27 2.95070 3.59237 0.11666 3.49752 27 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 28 3.09320 2.59806 3.14118 0.17794 28 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 29 3.09320 2.59806 3.14118 0.17794 29 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 30 3.09320 2.59806 3.14118 0.17794 30 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 31 2.95070 3.59237 0.11666 3.49752 31 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 32 3.09320 2.59806 3.14118 0.17794 32 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 33 3.09320 2.59806 3.14118 0.17794 33 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 34 2.95070 3.59237 0.11666 3.49752 34 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 35 2.95070 3.59237 0.11666 3.49752 35 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 36 0.14130 3.38481 2.80488 3.28690 36 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 37 2.95070 3.59237 0.11666 3.49752 37 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 38 3.09320 2.59806 3.14118 0.17794 38 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 39 2.95070 3.59237 0.11666 3.49752 39 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 40 3.09320 2.59806 3.14118 0.17794 40 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 41 3.43835 0.12958 3.48758 2.83281 41 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 42 3.09320 2.59806 3.14118 0.17794 42 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 43 2.95070 3.59237 0.11666 3.49752 43 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 44 3.09320 2.59806 3.14118 0.17794 44 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 45 3.09320 2.59806 3.14118 0.17794 45 - - 1.38629 1.38629 1.38629 1.38629 0.01856 3.99580 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Eustigmatophyceae_58S_start_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Sep 25 01:34:03 2011 NSEQ 6 EFFN 3.213867 CKSUM 1922503689 STATS LOCAL MSV -8.1335 0.71933 STATS LOCAL VITERBI -7.6652 0.71933 STATS LOCAL FORWARD -4.1546 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.22065 1.26567 1.52763 1.58055 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 0.00000 * 1 3.39218 0.13520 3.44336 2.79911 1 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 2 0.14667 3.34479 2.77882 3.24311 2 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 3 0.14667 3.34479 2.77882 3.24311 3 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 4 3.39218 0.13520 3.44336 2.79911 4 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 5 3.05294 2.57242 3.10245 0.18453 5 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 6 3.05294 2.57242 3.10245 0.18453 6 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 7 3.05294 2.57242 3.10245 0.18453 7 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 8 3.39218 0.13520 3.44336 2.79911 8 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 9 0.14667 3.34479 2.77882 3.24311 9 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 10 2.92262 3.55163 0.12119 3.45259 10 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 11 3.39218 0.13520 3.44336 2.79911 11 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 12 0.14667 3.34479 2.77882 3.24311 12 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 13 0.14667 3.34479 2.77882 3.24311 13 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 14 3.39218 0.13520 3.44336 2.79911 14 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 15 2.92262 3.55163 0.12119 3.45259 15 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 16 2.92262 3.55163 0.12119 3.45259 16 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 17 0.14667 3.34479 2.77882 3.24311 17 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 18 3.05294 2.57242 3.10245 0.18453 18 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 19 2.92262 3.55163 0.12119 3.45259 19 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 20 3.05294 2.57242 3.10245 0.18453 20 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 21 3.39218 0.13520 3.44336 2.79911 21 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 22 3.05294 2.57242 3.10245 0.18453 22 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 23 3.05294 2.57242 3.10245 0.18453 23 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 24 2.92262 3.55163 0.12119 3.45259 24 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 25 2.92262 3.55163 0.12119 3.45259 25 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 26 3.39218 0.13520 3.44336 2.79911 26 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 27 3.05294 2.57242 3.10245 0.18453 27 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 28 3.39218 0.13520 3.44336 2.79911 28 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 29 3.39218 0.13520 3.44336 2.79911 29 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 30 3.39218 0.13520 3.44336 2.79911 30 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 31 0.14667 3.34479 2.77882 3.24311 31 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 32 3.39218 0.13520 3.44336 2.79911 32 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 33 0.14667 3.34479 2.77882 3.24311 33 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 34 0.14667 3.34479 2.77882 3.24311 34 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 35 3.39218 0.13520 3.44336 2.79911 35 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 36 2.92262 3.55163 0.12119 3.45259 36 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 37 0.14667 3.34479 2.77882 3.24311 37 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 38 3.05294 2.57242 3.10245 0.18453 38 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 39 2.92262 3.55163 0.12119 3.45259 39 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 40 0.14667 3.34479 2.77882 3.24311 40 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 41 0.14667 3.34479 2.77882 3.24311 41 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 42 2.92262 3.55163 0.12119 3.45259 42 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 43 0.14667 3.34479 2.77882 3.24311 43 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 44 0.14667 3.34479 2.77882 3.24311 44 - - 1.38629 1.38629 1.38629 1.38629 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 45 3.39218 0.13520 3.44336 2.79911 45 - - 1.38629 1.38629 1.38629 1.38629 0.01900 3.97290 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Eustigmatophyceae_4_LSU_start_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Sep 25 01:43:21 2011 NSEQ 5 EFFN 3.315430 CKSUM 2420342418 STATS LOCAL MSV -8.0313 0.71931 STATS LOCAL VITERBI -7.5738 0.71931 STATS LOCAL FORWARD -3.9568 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.23266 1.26091 1.60118 1.49866 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 0.00000 * 1 3.08626 2.59365 3.13451 0.17906 1 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 2 3.08626 2.59365 3.13451 0.17906 2 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 3 3.43043 0.13053 3.48000 2.82705 3 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 4 2.94591 3.58540 0.11742 3.48982 4 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 5 2.94591 3.58540 0.11742 3.48982 5 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 6 0.14220 3.37794 2.80041 3.27938 6 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 7 3.43043 0.13053 3.48000 2.82705 7 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 8 3.43043 0.13053 3.48000 2.82705 8 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 9 3.08626 2.59365 3.13451 0.17906 9 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 10 3.43043 0.13053 3.48000 2.82705 10 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 11 3.43043 0.13053 3.48000 2.82705 11 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 12 0.14220 3.37794 2.80041 3.27938 12 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 13 0.14220 3.37794 2.80041 3.27938 13 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 14 3.08626 2.59365 3.13451 0.17906 14 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 15 3.43043 0.13053 3.48000 2.82705 15 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 16 0.14220 3.37794 2.80041 3.27938 16 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 17 0.14220 3.37794 2.80041 3.27938 17 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 18 2.94591 3.58540 0.11742 3.48982 18 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 19 3.43043 0.13053 3.48000 2.82705 19 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 20 0.14220 3.37794 2.80041 3.27938 20 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 21 0.14220 3.37794 2.80041 3.27938 21 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 22 2.94591 3.58540 0.11742 3.48982 22 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 23 2.94591 3.58540 0.11742 3.48982 23 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 24 3.43043 0.13053 3.48000 2.82705 24 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 25 3.08626 2.59365 3.13451 0.17906 25 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 26 0.14220 3.37794 2.80041 3.27938 26 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 27 3.43043 0.13053 3.48000 2.82705 27 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 28 3.43043 0.13053 3.48000 2.82705 28 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 29 3.43043 0.13053 3.48000 2.82705 29 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 30 2.94591 3.58540 0.11742 3.48982 30 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 31 3.43043 0.13053 3.48000 2.82705 31 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 32 3.08626 2.59365 3.13451 0.17906 32 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 33 2.94591 3.58540 0.11742 3.48982 33 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 34 0.33543 2.85734 1.81858 2.72885 34 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 35 0.14220 3.37794 2.80041 3.27938 35 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 36 3.08626 2.59365 3.13451 0.17906 36 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 37 3.08626 2.59365 3.13451 0.17906 37 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 38 3.08626 2.59365 3.13451 0.17906 38 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 39 0.14220 3.37794 2.80041 3.27938 39 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 40 0.14220 3.37794 2.80041 3.27938 40 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 41 2.94591 3.58540 0.11742 3.48982 41 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 42 3.43043 0.13053 3.48000 2.82705 42 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 43 0.14220 3.37794 2.80041 3.27938 43 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 44 3.08626 2.59365 3.13451 0.17906 44 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 45 0.14220 3.37794 2.80041 3.27938 45 - - 1.38629 1.38629 1.38629 1.38629 0.01864 3.99184 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Eustigmatophyceae_1_SSU_end_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Jan 19 22:34:10 2012 NSEQ 6 EFFN 3.225586 CKSUM 778367950 STATS LOCAL MSV -8.0048 0.71933 STATS LOCAL VITERBI -7.6831 0.71933 STATS LOCAL FORWARD -4.1090 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27189 1.62645 1.24659 1.44567 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 0.00000 * 1 0.14614 3.34867 2.78135 3.24736 1 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 2 2.92536 3.55560 0.12074 3.45696 2 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 3 3.05683 2.57491 3.10619 0.18389 3 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 4 3.39667 0.13464 3.44765 2.80239 4 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 5 2.92536 3.55560 0.12074 3.45696 5 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 6 3.05683 2.57491 3.10619 0.18389 6 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 7 0.14614 3.34867 2.78135 3.24736 7 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 8 0.14614 3.34867 2.78135 3.24736 8 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 9 3.39667 0.13464 3.44765 2.80239 9 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 10 0.14614 3.34867 2.78135 3.24736 10 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 11 0.14614 3.34867 2.78135 3.24736 11 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 12 2.92536 3.55560 0.12074 3.45696 12 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 13 2.92536 3.55560 0.12074 3.45696 13 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 14 3.05683 2.57491 3.10619 0.18389 14 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 15 3.05683 2.57491 3.10619 0.18389 15 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 16 3.05683 2.57491 3.10619 0.18389 16 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 17 3.39667 0.13464 3.44765 2.80239 17 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 18 3.39667 0.13464 3.44765 2.80239 18 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 19 2.92536 3.55560 0.12074 3.45696 19 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 20 3.05683 2.57491 3.10619 0.18389 20 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 21 0.14614 3.34867 2.78135 3.24736 21 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 22 2.92536 3.55560 0.12074 3.45696 22 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 23 2.92536 3.55560 0.12074 3.45696 23 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 24 3.05683 2.57491 3.10619 0.18389 24 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 25 2.92536 3.55560 0.12074 3.45696 25 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 26 0.14614 3.34867 2.78135 3.24736 26 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 27 0.14614 3.34867 2.78135 3.24736 27 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 28 3.39667 0.13464 3.44765 2.80239 28 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 29 3.39667 0.13464 3.44765 2.80239 29 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 30 3.05683 2.57491 3.10619 0.18389 30 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 31 2.92536 3.55560 0.12074 3.45696 31 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 32 3.39667 0.13464 3.44765 2.80239 32 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 33 2.92536 3.55560 0.12074 3.45696 33 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 34 2.92536 3.55560 0.12074 3.45696 34 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 35 0.14614 3.34867 2.78135 3.24736 35 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 36 0.14614 3.34867 2.78135 3.24736 36 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 37 2.92536 3.55560 0.12074 3.45696 37 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 38 2.92536 3.55560 0.12074 3.45696 38 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 39 0.14614 3.34867 2.78135 3.24736 39 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 40 3.05683 2.57491 3.10619 0.18389 40 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 41 3.39667 0.13464 3.44765 2.80239 41 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 42 0.14614 3.34867 2.78135 3.24736 42 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 43 3.05683 2.57491 3.10619 0.18389 43 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 44 3.05683 2.57491 3.10619 0.18389 44 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547 45 0.14614 3.34867 2.78135 3.24736 45 - - 1.38629 1.38629 1.38629 1.38629 0.01896 3.97511 * 1.46634 0.26236 0.00000 * //