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HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_eight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:03:14 2012
NSEQ  2983
EFFN  3.376790
CKSUM 630809808
STATS LOCAL MSV       -7.3235  0.71932
STATS LOCAL VITERBI   -7.7268  0.71932
STATS LOCAL FORWARD   -3.9994  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.71234  1.37658  1.27028  1.25049
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  0.00000        *
      1   3.45287  0.12788  3.50149  2.84336      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
      2   0.13965  3.39742  2.81306  3.30071      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
      3   3.45287  0.12788  3.50149  2.84336      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
      4   3.10596  2.60617  3.15345  0.17590      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
      5   3.07064  2.51740  3.11930  0.18784      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
      6   3.40266  0.13843  3.45273  2.74368      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
      7   3.45287  0.12788  3.50149  2.84336      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
      8   2.95946  3.60514  0.11528  3.51162      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
      9   2.95946  3.60514  0.11528  3.51162      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     10   2.95946  3.60514  0.11528  3.51162     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     11   3.07576  2.52995  3.12424  0.18607     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     12   3.10596  2.60617  3.15345  0.17590     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     13   0.13965  3.39742  2.81306  3.30071     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     14   2.95946  3.60514  0.11528  3.51162     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     15   3.01261  2.38100  3.06343  0.20868     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     16   3.45287  0.12788  3.50149  2.84336     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     17   3.45287  0.12788  3.50149  2.84336     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     18   3.10596  2.60617  3.15345  0.17590     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     19   2.95946  3.60514  0.11528  3.51162     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     20   2.95946  3.60514  0.11528  3.51162     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     21   1.77028  2.90399  0.33921  2.77137     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     22   0.13965  3.39742  2.81306  3.30071     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     23   2.95946  3.60514  0.11528  3.51162     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     24   3.10596  2.60617  3.15345  0.17590     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     25   0.13965  3.39742  2.81306  3.30071     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     26   3.10596  2.60617  3.15345  0.17590     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     27   2.95946  3.60514  0.11528  3.51162     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     28   3.45287  0.12788  3.50149  2.84336     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     29   3.45287  0.12788  3.50149  2.84336     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     30   3.10596  2.60617  3.15345  0.17590     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     31   2.95946  3.60514  0.11528  3.51162     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     32   3.10596  2.60617  3.15345  0.17590     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     33   0.13965  3.39742  2.81306  3.30071     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     34   3.10596  2.60617  3.15345  0.17590     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     35   3.45287  0.12788  3.50149  2.84336     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     36   0.13965  3.39742  2.81306  3.30071     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     37   2.95946  3.60514  0.11528  3.51162     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     38   3.10596  2.60617  3.15345  0.17590     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     39   2.95946  3.60514  0.11528  3.51162     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     40   3.10596  2.60617  3.15345  0.17590     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     41   3.45287  0.12788  3.50149  2.84336     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     42   3.40764  0.13736  3.45755  2.75327     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     43   2.95946  3.60514  0.11528  3.51162     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     44   3.10596  2.60617  3.15345  0.17590     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
     45   0.13965  3.39742  2.81306  3.30071     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01843  4.00310        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_eighteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:05:17 2012
NSEQ  66
EFFN  3.387817
CKSUM 3936920601
STATS LOCAL MSV       -7.3341  0.71931
STATS LOCAL VITERBI   -7.7613  0.71931
STATS LOCAL FORWARD   -4.0489  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72377  1.45753  1.31845  1.13554
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  0.00000        *
      1   3.45687  0.12741  3.50531  2.84626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
      2   0.13920  3.40089  2.81531  3.30452      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
      3   3.45687  0.12741  3.50531  2.84626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
      4   3.10948  2.60841  3.15684  0.17535      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
      5   3.10948  2.60841  3.15684  0.17535      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
      6   3.10948  2.60841  3.15684  0.17535      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
      7   3.45687  0.12741  3.50531  2.84626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
      8   2.96186  3.60865  0.11490  3.51549      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
      9   2.96186  3.60865  0.11490  3.51549      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     10   2.96186  3.60865  0.11490  3.51549     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     11   3.10948  2.60841  3.15684  0.17535     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     12   3.10948  2.60841  3.15684  0.17535     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     13   2.85130  0.31564  2.91699  1.84004     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     14   3.10948  2.60841  3.15684  0.17535     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     15   2.96186  3.60865  0.11490  3.51549     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     16   3.45687  0.12741  3.50531  2.84626     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     17   3.45687  0.12741  3.50531  2.84626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     18   3.10948  2.60841  3.15684  0.17535     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     19   2.96186  3.60865  0.11490  3.51549     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     20   2.96186  3.60865  0.11490  3.51549     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     21   0.13920  3.40089  2.81531  3.30452     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     22   0.13920  3.40089  2.81531  3.30452     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     23   2.96186  3.60865  0.11490  3.51549     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     24   3.10948  2.60841  3.15684  0.17535     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     25   0.13920  3.40089  2.81531  3.30452     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     26   3.10948  2.60841  3.15684  0.17535     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     27   2.96186  3.60865  0.11490  3.51549     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     28   3.10948  2.60841  3.15684  0.17535     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     29   3.45687  0.12741  3.50531  2.84626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     30   3.10948  2.60841  3.15684  0.17535     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     31   2.96186  3.60865  0.11490  3.51549     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     32   3.10948  2.60841  3.15684  0.17535     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     33   0.13920  3.40089  2.81531  3.30452     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     34   3.10948  2.60841  3.15684  0.17535     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     35   3.45687  0.12741  3.50531  2.84626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     36   0.13920  3.40089  2.81531  3.30452     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     37   2.96186  3.60865  0.11490  3.51549     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     38   3.10948  2.60841  3.15684  0.17535     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     39   2.96186  3.60865  0.11490  3.51549     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     40   3.10948  2.60841  3.15684  0.17535     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     41   3.45687  0.12741  3.50531  2.84626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     42   3.45687  0.12741  3.50531  2.84626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     43   2.96186  3.60865  0.11490  3.51549     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     44   3.10948  2.60841  3.15684  0.17535     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
     45   0.13920  3.40089  2.81531  3.30452     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01839  4.00512        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_eleven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:03:45 2012
NSEQ  5
EFFN  3.286133
CKSUM 3431982012
STATS LOCAL MSV       -8.0387  0.71931
STATS LOCAL VITERBI   -7.7022  0.71931
STATS LOCAL FORWARD   -3.9965  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72267  1.44764  1.25731  1.19776
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  0.00000        *
      1   3.41954  0.13184  3.46957  2.81911      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
      2   0.14346  3.36849  2.79427  3.26904      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
      3   3.41954  0.13184  3.46957  2.81911      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
      4   3.07674  2.58759  3.12535  0.18060      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
      5   3.07674  2.58759  3.12535  0.18060      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
      6   3.41954  0.13184  3.46957  2.81911      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
      7   3.41954  0.13184  3.46957  2.81911      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
      8   2.93930  3.57580  0.11848  3.47923      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
      9   2.93930  3.57580  0.11848  3.47923      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     10   2.93930  3.57580  0.11848  3.47923     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     11   3.07674  2.58759  3.12535  0.18060     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     12   3.07674  2.58759  3.12535  0.18060     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     13   0.14346  3.36849  2.79427  3.26904     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     14   3.07674  2.58759  3.12535  0.18060     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     15   2.93930  3.57580  0.11848  3.47923     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     16   3.41954  0.13184  3.46957  2.81911     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     17   3.41954  0.13184  3.46957  2.81911     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     18   3.07674  2.58759  3.12535  0.18060     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     19   2.93930  3.57580  0.11848  3.47923     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     20   2.93930  3.57580  0.11848  3.47923     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     21   2.93930  3.57580  0.11848  3.47923     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     22   0.14346  3.36849  2.79427  3.26904     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     23   2.93930  3.57580  0.11848  3.47923     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     24   3.07674  2.58759  3.12535  0.18060     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     25   0.14346  3.36849  2.79427  3.26904     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     26   3.07674  2.58759  3.12535  0.18060     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     27   2.93930  3.57580  0.11848  3.47923     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     28   3.07674  2.58759  3.12535  0.18060     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     29   3.41954  0.13184  3.46957  2.81911     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     30   3.07674  2.58759  3.12535  0.18060     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     31   2.93930  3.57580  0.11848  3.47923     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     32   3.07674  2.58759  3.12535  0.18060     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     33   0.14346  3.36849  2.79427  3.26904     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     34   3.07674  2.58759  3.12535  0.18060     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     35   3.41954  0.13184  3.46957  2.81911     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     36   0.14346  3.36849  2.79427  3.26904     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     37   2.93930  3.57580  0.11848  3.47923     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     38   3.07674  2.58759  3.12535  0.18060     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     39   2.93930  3.57580  0.11848  3.47923     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     40   3.07674  2.58759  3.12535  0.18060     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     41   3.41954  0.13184  3.46957  2.81911     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     42   3.41954  0.13184  3.46957  2.81911     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     43   2.93930  3.57580  0.11848  3.47923     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     44   3.07674  2.58759  3.12535  0.18060     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
     45   0.14346  3.36849  2.79427  3.26904     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01874  3.98641        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_fifteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:04:33 2012
NSEQ  2
EFFN  2.000000
CKSUM 3914797017
STATS LOCAL MSV       -7.4374  0.72820
STATS LOCAL VITERBI   -8.4197  0.72820
STATS LOCAL FORWARD   -3.4238  0.72820
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.66221  1.33035  1.32438  1.27323
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_fifty_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:11:28 2012
NSEQ  2
EFFN  2.000000
CKSUM 967929854
STATS LOCAL MSV       -7.3485  0.72825
STATS LOCAL VITERBI   -8.2404  0.72825
STATS LOCAL FORWARD   -3.4311  0.72825
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.52311  1.27981  1.44171  1.31919
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.81865  0.23582  2.88868  2.35662     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_fiftyone_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:11:37 2012
NSEQ  7
EFFN  3.264160
CKSUM 713685856
STATS LOCAL MSV       -8.1498  0.71932
STATS LOCAL VITERBI   -7.7201  0.71932
STATS LOCAL FORWARD   -4.3295  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.55404  1.31478  1.38653  1.30885
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  0.00000        *
      1   3.41129  0.13284  3.46167  2.81309      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      2   3.41129  0.13284  3.46167  2.81309      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      3   0.14442  3.36134  2.78962  3.26122      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      4   3.41129  0.13284  3.46167  2.81309      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      5   3.41129  0.13284  3.46167  2.81309      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      6   3.06955  2.58301  3.11843  0.18178      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      7   0.14442  3.36134  2.78962  3.26122      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      8   3.06955  2.58301  3.11843  0.18178      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      9   2.93428  3.56852  0.11929  3.47120      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     10   3.41129  0.13284  3.46167  2.81309     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     11   3.06955  2.58301  3.11843  0.18178     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     12   0.14442  3.36134  2.78962  3.26122     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     13   3.41129  0.13284  3.46167  2.81309     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     14   2.93428  3.56852  0.11929  3.47120     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     15   3.41129  0.13284  3.46167  2.81309     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     16   3.06955  2.58301  3.11843  0.18178     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     17   0.14442  3.36134  2.78962  3.26122     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     18   3.06955  2.58301  3.11843  0.18178     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     19   2.93428  3.56852  0.11929  3.47120     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     20   2.93428  3.56852  0.11929  3.47120     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     21   0.14442  3.36134  2.78962  3.26122     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     22   2.93428  3.56852  0.11929  3.47120     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     23   2.93428  3.56852  0.11929  3.47120     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     24   3.06955  2.58301  3.11843  0.18178     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     25   0.14442  3.36134  2.78962  3.26122     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     26   3.06955  2.58301  3.11843  0.18178     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     27   2.93428  3.56852  0.11929  3.47120     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     28   3.41129  0.13284  3.46167  2.81309     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     29   3.41129  0.13284  3.46167  2.81309     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     30   3.06955  2.58301  3.11843  0.18178     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     31   2.93428  3.56852  0.11929  3.47120     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     32   3.06955  2.58301  3.11843  0.18178     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     33   2.93428  3.56852  0.11929  3.47120     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     34   3.06955  2.58301  3.11843  0.18178     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     35   3.41129  0.13284  3.46167  2.81309     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     36   0.14442  3.36134  2.78962  3.26122     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     37   2.93428  3.56852  0.11929  3.47120     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     38   3.06955  2.58301  3.11843  0.18178     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     39   2.93428  3.56852  0.11929  3.47120     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     40   3.06955  2.58301  3.11843  0.18178     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     41   3.06955  2.58301  3.11843  0.18178     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     42   3.41129  0.13284  3.46167  2.81309     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     43   3.41129  0.13284  3.46167  2.81309     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     44   0.14442  3.36134  2.78962  3.26122     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     45   0.14442  3.36134  2.78962  3.26122     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01882  3.98232        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_five_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:02:23 2012
NSEQ  2
EFFN  2.000000
CKSUM 1892825005
STATS LOCAL MSV       -7.2444  0.72835
STATS LOCAL VITERBI   -8.3433  0.72835
STATS LOCAL FORWARD   -3.3819  0.72835
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.73627  1.44157  1.26874  1.18390
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.53331  3.02441  0.20344  2.88069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_fortyeight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:11:04 2012
NSEQ  7
EFFN  3.346191
CKSUM 1450221519
STATS LOCAL MSV       -8.1812  0.71933
STATS LOCAL VITERBI   -7.6059  0.71933
STATS LOCAL FORWARD   -4.2073  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47372  1.37170  1.38114  1.32441
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  0.00000        *
      1   3.09618  2.59996  3.14405  0.17746      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
      2   0.14091  3.38776  2.80679  3.29014      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
      3   3.44175  0.12918  3.49084  2.83528      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
      4   3.44175  0.12918  3.49084  2.83528      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
      5   2.95275  3.59536  0.11633  3.50082      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
      6   2.95275  3.59536  0.11633  3.50082      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
      7   2.95275  3.59536  0.11633  3.50082      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
      8   2.95275  3.59536  0.11633  3.50082      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
      9   3.44175  0.12918  3.49084  2.83528      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     10   3.09618  2.59996  3.14405  0.17746     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     11   0.14091  3.38776  2.80679  3.29014     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     12   2.95275  3.59536  0.11633  3.50082     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     13   0.14091  3.38776  2.80679  3.29014     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     14   3.09618  2.59996  3.14405  0.17746     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     15   3.44175  0.12918  3.49084  2.83528     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     16   3.09618  2.59996  3.14405  0.17746     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     17   3.09618  2.59996  3.14405  0.17746     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     18   3.44175  0.12918  3.49084  2.83528     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     19   2.95275  3.59536  0.11633  3.50082     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     20   2.95275  3.59536  0.11633  3.50082     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     21   0.14091  3.38776  2.80679  3.29014     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     22   0.14091  3.38776  2.80679  3.29014     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     23   2.95275  3.59536  0.11633  3.50082     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     24   3.09618  2.59996  3.14405  0.17746     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     25   0.14091  3.38776  2.80679  3.29014     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     26   3.09618  2.59996  3.14405  0.17746     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     27   2.95275  3.59536  0.11633  3.50082     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     28   3.44175  0.12918  3.49084  2.83528     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     29   3.44175  0.12918  3.49084  2.83528     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     30   3.09618  2.59996  3.14405  0.17746     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     31   3.44175  0.12918  3.49084  2.83528     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     32   3.09618  2.59996  3.14405  0.17746     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     33   0.14091  3.38776  2.80679  3.29014     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     34   3.09618  2.59996  3.14405  0.17746     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     35   3.44175  0.12918  3.49084  2.83528     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     36   0.14091  3.38776  2.80679  3.29014     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     37   2.95275  3.59536  0.11633  3.50082     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     38   3.09618  2.59996  3.14405  0.17746     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     39   2.95275  3.59536  0.11633  3.50082     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     40   3.09618  2.59996  3.14405  0.17746     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     41   3.44175  0.12918  3.49084  2.83528     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     42   3.44175  0.12918  3.49084  2.83528     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     43   0.14091  3.38776  2.80679  3.29014     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     44   2.55815  1.47151  2.62502  0.47717     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
     45   0.14091  3.38776  2.80679  3.29014     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01853  3.99750        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_fortyfive_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:10:31 2012
NSEQ  32
EFFN  3.292969
CKSUM 950115204
STATS LOCAL MSV       -8.1199  0.71933
STATS LOCAL VITERBI   -7.9534  0.71933
STATS LOCAL FORWARD   -3.9017  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.64328  1.19125  1.53972  1.24350
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  0.00000        *
      1   3.42209  0.13153  3.47201  2.82097      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      2   3.07897  2.58901  3.12749  0.18024      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      3   3.07897  2.58901  3.12749  0.18024      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      4   3.42209  0.13153  3.47201  2.82097      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      5   3.07897  2.58901  3.12749  0.18024      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      6   3.42209  0.13153  3.47201  2.82097      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      7   2.94085  3.57805  0.11823  3.48171      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      8   2.94085  3.57805  0.11823  3.48171      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      9   2.94085  3.57805  0.11823  3.48171      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     10   3.42209  0.13153  3.47201  2.82097     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     11   3.07897  2.58901  3.12749  0.18024     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     12   0.14316  3.37070  2.79571  3.27146     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     13   2.94085  3.57805  0.11823  3.48171     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     14   3.07897  2.58901  3.12749  0.18024     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     15   3.42209  0.13153  3.47201  2.82097     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     16   3.07897  2.58901  3.12749  0.18024     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     17   3.42209  0.13153  3.47201  2.82097     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     18   3.42209  0.13153  3.47201  2.82097     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     19   3.07897  2.58901  3.12749  0.18024     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     20   2.94085  3.57805  0.11823  3.48171     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     21   0.14316  3.37070  2.79571  3.27146     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     22   0.14316  3.37070  2.79571  3.27146     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     23   2.94085  3.57805  0.11823  3.48171     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     24   3.07897  2.58901  3.12749  0.18024     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     25   0.14316  3.37070  2.79571  3.27146     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     26   3.07897  2.58901  3.12749  0.18024     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     27   2.94085  3.57805  0.11823  3.48171     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     28   3.42209  0.13153  3.47201  2.82097     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     29   3.42209  0.13153  3.47201  2.82097     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     30   3.07897  2.58901  3.12749  0.18024     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     31   3.42209  0.13153  3.47201  2.82097     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     32   3.07897  2.58901  3.12749  0.18024     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     33   0.14316  3.37070  2.79571  3.27146     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     34   3.07897  2.58901  3.12749  0.18024     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     35   3.42209  0.13153  3.47201  2.82097     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     36   0.14316  3.37070  2.79571  3.27146     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     37   2.94085  3.57805  0.11823  3.48171     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     38   3.07897  2.58901  3.12749  0.18024     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     39   2.94085  3.57805  0.11823  3.48171     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     40   3.07897  2.58901  3.12749  0.18024     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     41   3.42209  0.13153  3.47201  2.82097     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     42   3.42209  0.13153  3.47201  2.82097     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     43   0.14316  3.37070  2.79571  3.27146     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     44   3.42209  0.13153  3.47201  2.82097     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     45   0.14316  3.37070  2.79571  3.27146     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01872  3.98768        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_fortyfour_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:10:21 2012
NSEQ  10
EFFN  3.266602
CKSUM 1629254486
STATS LOCAL MSV       -8.1952  0.71931
STATS LOCAL VITERBI   -7.8219  0.71931
STATS LOCAL FORWARD   -3.7929  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.64193  1.19469  1.46172  1.30284
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  0.00000        *
      1   3.41221  0.13273  3.46255  2.81376      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
      2   3.07035  2.58352  3.11920  0.18165      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
      3   3.07035  2.58352  3.11920  0.18165      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
      4   3.41221  0.13273  3.46255  2.81376      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
      5   3.41221  0.13273  3.46255  2.81376      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
      6   3.07035  2.58352  3.11920  0.18165      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
      7   2.93484  3.56933  0.11920  3.47210      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
      8   2.93484  3.56933  0.11920  3.47210      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
      9   2.93484  3.56933  0.11920  3.47210      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     10   3.41221  0.13273  3.46255  2.81376     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     11   3.07035  2.58352  3.11920  0.18165     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     12   0.14431  3.36214  2.79014  3.26209     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     13   2.93484  3.56933  0.11920  3.47210     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     14   3.07035  2.58352  3.11920  0.18165     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     15   3.41221  0.13273  3.46255  2.81376     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     16   3.07035  2.58352  3.11920  0.18165     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     17   3.41221  0.13273  3.46255  2.81376     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     18   3.41221  0.13273  3.46255  2.81376     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     19   2.93484  3.56933  0.11920  3.47210     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     20   2.93484  3.56933  0.11920  3.47210     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     21   0.14431  3.36214  2.79014  3.26209     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     22   0.14431  3.36214  2.79014  3.26209     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     23   2.93484  3.56933  0.11920  3.47210     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     24   3.07035  2.58352  3.11920  0.18165     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     25   0.14431  3.36214  2.79014  3.26209     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     26   3.07035  2.58352  3.11920  0.18165     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     27   2.93484  3.56933  0.11920  3.47210     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     28   3.41221  0.13273  3.46255  2.81376     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     29   3.41221  0.13273  3.46255  2.81376     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     30   3.07035  2.58352  3.11920  0.18165     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     31   3.41221  0.13273  3.46255  2.81376     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     32   3.07035  2.58352  3.11920  0.18165     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     33   0.14431  3.36214  2.79014  3.26209     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     34   3.07035  2.58352  3.11920  0.18165     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     35   3.41221  0.13273  3.46255  2.81376     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     36   0.14431  3.36214  2.79014  3.26209     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     37   2.93484  3.56933  0.11920  3.47210     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     38   3.07035  2.58352  3.11920  0.18165     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     39   2.93484  3.56933  0.11920  3.47210     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     40   3.07035  2.58352  3.11920  0.18165     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     41   3.41221  0.13273  3.46255  2.81376     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     42   3.41221  0.13273  3.46255  2.81376     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     43   0.14431  3.36214  2.79014  3.26209     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     44   3.41221  0.13273  3.46255  2.81376     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     45   0.14431  3.36214  2.79014  3.26209     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01881  3.98278        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_fortynine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:11:14 2012
NSEQ  77
EFFN  3.501282
CKSUM 2729618959
STATS LOCAL MSV       -7.5473  0.71934
STATS LOCAL VITERBI   -7.7199  0.71934
STATS LOCAL FORWARD   -3.9750  0.71934
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.55389  1.28430  1.53341  1.21762
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  0.00000        *
      1   3.49696  0.12284  3.54366  2.87525      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
      2   3.14500  2.63096  3.19098  0.16985      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
      3   3.14500  2.63096  3.19098  0.16985      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
      4   3.49696  0.12284  3.54366  2.87525      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
      5   3.14500  2.63096  3.19098  0.16985      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
      6   3.14500  2.63096  3.19098  0.16985      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
      7   2.98586  3.64378  0.11121  3.55433      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
      8   2.98586  3.64378  0.11121  3.55433      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
      9   2.98586  3.64378  0.11121  3.55433      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     10   2.74372  0.38620  2.81168  1.62999     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     11   3.14500  2.63096  3.19098  0.16985     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     12   0.13478  3.43577  2.83786  3.34275     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     13   2.98586  3.64378  0.11121  3.55433     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     14   3.14500  2.63096  3.19098  0.16985     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     15   3.49696  0.12284  3.54366  2.87525     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     16   3.49696  0.12284  3.54366  2.87525     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     17   3.14500  2.63096  3.19098  0.16985     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     18   0.13478  3.43577  2.83786  3.34275     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     19   3.49696  0.12284  3.54366  2.87525     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     20   2.98586  3.64378  0.11121  3.55433     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     21   0.13478  3.43577  2.83786  3.34275     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     22   0.13478  3.43577  2.83786  3.34275     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     23   2.98586  3.64378  0.11121  3.55433     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     24   3.14500  2.63096  3.19098  0.16985     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     25   0.13478  3.43577  2.83786  3.34275     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     26   3.14500  2.63096  3.19098  0.16985     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     27   2.98586  3.64378  0.11121  3.55433     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     28   3.49696  0.12284  3.54366  2.87525     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     29   3.49696  0.12284  3.54366  2.87525     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     30   3.14500  2.63096  3.19098  0.16985     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     31   3.49696  0.12284  3.54366  2.87525     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     32   3.14500  2.63096  3.19098  0.16985     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     33   0.13478  3.43577  2.83786  3.34275     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     34   3.14500  2.63096  3.19098  0.16985     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     35   3.49696  0.12284  3.54366  2.87525     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     36   0.13478  3.43577  2.83786  3.34275     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     37   2.98586  3.64378  0.11121  3.55433     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     38   3.14500  2.63096  3.19098  0.16985     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     39   2.98586  3.64378  0.11121  3.55433     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     40   3.14500  2.63096  3.19098  0.16985     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     41   3.49696  0.12284  3.54366  2.87525     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     42   3.49696  0.12284  3.54366  2.87525     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     43   0.13478  3.43577  2.83786  3.34275     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     44   2.58677  0.51901  2.65746  1.34899     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
     45   0.13478  3.43577  2.83786  3.34275     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01801  4.02558        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_fortyone_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:09:53 2012
NSEQ  13
EFFN  3.570557
CKSUM 2743763495
STATS LOCAL MSV       -7.4127  0.71933
STATS LOCAL VITERBI   -7.7019  0.71933
STATS LOCAL FORWARD   -3.6164  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.66856  1.57761  1.29461  1.10561
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  0.00000        *
      1   2.99995  3.66446  0.10910  3.57724      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
      2   3.52065  0.12024  3.56632  2.89230      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
      3   0.13224  3.45644  2.85118  3.36541      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
      4   3.52065  0.12024  3.56632  2.89230      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
      5   3.16617  2.64439  3.21133  0.16666      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
      6   3.16617  2.64439  3.21133  0.16666      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
      7   2.50299  1.21696  2.57233  0.60573      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
      8   3.52065  0.12024  3.56632  2.89230      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
      9   2.99995  3.66446  0.10910  3.57724      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     10   2.99995  3.66446  0.10910  3.57724     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     11   2.99995  3.66446  0.10910  3.57724     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     12   3.16617  2.64439  3.21133  0.16666     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     13   0.13224  3.45644  2.85118  3.36541     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     14   3.16617  2.64439  3.21133  0.16666     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     15   3.16617  2.64439  3.21133  0.16666     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     16   3.52065  0.12024  3.56632  2.89230     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     17   3.52065  0.12024  3.56632  2.89230     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     18   3.16617  2.64439  3.21133  0.16666     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     19   2.99995  3.66446  0.10910  3.57724     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     20   2.99995  3.66446  0.10910  3.57724     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     21   0.60012  2.61486  1.22476  2.47401     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     22   0.13224  3.45644  2.85118  3.36541     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     23   2.99995  3.66446  0.10910  3.57724     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     24   3.16617  2.64439  3.21133  0.16666     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     25   0.13224  3.45644  2.85118  3.36541     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     26   3.16617  2.64439  3.21133  0.16666     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     27   2.99995  3.66446  0.10910  3.57724     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     28   3.52065  0.12024  3.56632  2.89230     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     29   3.16617  2.64439  3.21133  0.16666     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     30   3.16617  2.64439  3.21133  0.16666     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     31   2.99995  3.66446  0.10910  3.57724     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     32   3.16617  2.64439  3.21133  0.16666     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     33   0.13224  3.45644  2.85118  3.36541     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     34   3.16617  2.64439  3.21133  0.16666     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     35   3.52065  0.12024  3.56632  2.89230     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     36   0.13224  3.45644  2.85118  3.36541     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     37   2.99995  3.66446  0.10910  3.57724     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     38   3.16617  2.64439  3.21133  0.16666     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     39   2.99995  3.66446  0.10910  3.57724     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     40   3.16617  2.64439  3.21133  0.16666     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     41   3.52065  0.12024  3.56632  2.89230     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     42   3.16617  2.64439  3.21133  0.16666     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     43   2.99995  3.66446  0.10910  3.57724     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     44   3.16617  2.64439  3.21133  0.16666     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
     45   0.13224  3.45644  2.85118  3.36541     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01779  4.03787        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_fortyseven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:10:52 2012
NSEQ  3
EFFN  3.000000
CKSUM 3214309007
STATS LOCAL MSV       -7.9945  0.72035
STATS LOCAL VITERBI   -7.7983  0.72035
STATS LOCAL FORWARD   -3.8773  0.72035
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47802  1.26112  1.45372  1.36699
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.86982  3.47591  0.13017  3.36931      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.86982  3.47591  0.13017  3.36931      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.97980  2.52563  3.03204  0.19727     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   3.30705  0.14631  3.36166  2.73626     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.97980  2.52563  3.03204  0.19727     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   0.15719  3.27118  2.73043  3.16274     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   0.15719  3.27118  2.73043  3.16274     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   3.30705  0.14631  3.36166  2.73626     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_fortysix_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:10:44 2012
NSEQ  7
EFFN  3.284668
CKSUM 3559013258
STATS LOCAL MSV       -8.1480  0.71933
STATS LOCAL VITERBI   -7.6244  0.71933
STATS LOCAL FORWARD   -4.0846  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.55436  1.38103  1.38462  1.24849
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  0.00000        *
      1   3.07626  2.58729  3.12489  0.18068      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
      2   3.07626  2.58729  3.12489  0.18068      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
      3   3.41899  0.13190  3.46904  2.81871      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
      4   3.41899  0.13190  3.46904  2.81871      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
      5   2.93897  3.57531  0.11853  3.47870      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
      6   2.93897  3.57531  0.11853  3.47870      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
      7   2.93897  3.57531  0.11853  3.47870      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
      8   2.93897  3.57531  0.11853  3.47870      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
      9   3.41899  0.13190  3.46904  2.81871      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     10   3.07626  2.58729  3.12489  0.18068     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     11   0.14352  3.36802  2.79396  3.26852     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     12   2.93897  3.57531  0.11853  3.47870     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     13   0.14352  3.36802  2.79396  3.26852     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     14   3.07626  2.58729  3.12489  0.18068     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     15   3.41899  0.13190  3.46904  2.81871     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     16   3.07626  2.58729  3.12489  0.18068     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     17   3.07626  2.58729  3.12489  0.18068     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     18   3.41899  0.13190  3.46904  2.81871     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     19   2.93897  3.57531  0.11853  3.47870     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     20   2.93897  3.57531  0.11853  3.47870     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     21   0.14352  3.36802  2.79396  3.26852     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     22   0.14352  3.36802  2.79396  3.26852     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     23   2.93897  3.57531  0.11853  3.47870     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     24   3.07626  2.58729  3.12489  0.18068     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     25   0.14352  3.36802  2.79396  3.26852     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     26   3.07626  2.58729  3.12489  0.18068     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     27   2.93897  3.57531  0.11853  3.47870     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     28   3.41899  0.13190  3.46904  2.81871     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     29   3.41899  0.13190  3.46904  2.81871     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     30   3.07626  2.58729  3.12489  0.18068     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     31   3.41899  0.13190  3.46904  2.81871     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     32   3.07626  2.58729  3.12489  0.18068     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     33   0.14352  3.36802  2.79396  3.26852     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     34   3.07626  2.58729  3.12489  0.18068     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     35   3.41899  0.13190  3.46904  2.81871     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     36   0.14352  3.36802  2.79396  3.26852     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     37   2.93897  3.57531  0.11853  3.47870     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     38   3.07626  2.58729  3.12489  0.18068     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     39   2.93897  3.57531  0.11853  3.47870     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     40   3.07626  2.58729  3.12489  0.18068     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     41   3.41899  0.13190  3.46904  2.81871     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     42   3.41899  0.13190  3.46904  2.81871     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     43   0.14352  3.36802  2.79396  3.26852     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     44   3.07626  2.58729  3.12489  0.18068     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
     45   0.14352  3.36802  2.79396  3.26852     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01875  3.98614        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_fortythree_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:10:12 2012
NSEQ  9
EFFN  3.256348
CKSUM 1671317991
STATS LOCAL MSV       -7.9243  0.71931
STATS LOCAL VITERBI   -7.6584  0.71931
STATS LOCAL FORWARD   -4.1486  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.48059  1.25640  1.45713  1.36682
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  0.00000        *
      1   3.40835  0.13320  3.45885  2.81094      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
      2   3.06699  2.58138  3.11596  0.18220      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
      3   3.06699  2.58138  3.11596  0.18220      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
      4   3.40835  0.13320  3.45885  2.81094      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
      5   3.40835  0.13320  3.45885  2.81094      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
      6   2.93249  3.56592  0.11958  3.46834      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
      7   2.93249  3.56592  0.11958  3.46834      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
      8   2.93249  3.56592  0.11958  3.46834      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
      9   2.93249  3.56592  0.11958  3.46834      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     10   3.40835  0.13320  3.45885  2.81094     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     11   3.06699  2.58138  3.11596  0.18220     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     12   0.14476  3.35879  2.78795  3.25843     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     13   2.93249  3.56592  0.11958  3.46834     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     14   3.06699  2.58138  3.11596  0.18220     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     15   3.40835  0.13320  3.45885  2.81094     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     16   3.40835  0.13320  3.45885  2.81094     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     17   3.06699  2.58138  3.11596  0.18220     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     18   3.40835  0.13320  3.45885  2.81094     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     19   0.14476  3.35879  2.78795  3.25843     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     20   2.93249  3.56592  0.11958  3.46834     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     21   0.14476  3.35879  2.78795  3.25843     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     22   0.14476  3.35879  2.78795  3.25843     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     23   2.93249  3.56592  0.11958  3.46834     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     24   3.06699  2.58138  3.11596  0.18220     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     25   0.14476  3.35879  2.78795  3.25843     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     26   3.06699  2.58138  3.11596  0.18220     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     27   2.93249  3.56592  0.11958  3.46834     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     28   3.40835  0.13320  3.45885  2.81094     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     29   3.40835  0.13320  3.45885  2.81094     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     30   3.06699  2.58138  3.11596  0.18220     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     31   0.14476  3.35879  2.78795  3.25843     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     32   3.06699  2.58138  3.11596  0.18220     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     33   0.14476  3.35879  2.78795  3.25843     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     34   3.06699  2.58138  3.11596  0.18220     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     35   3.40835  0.13320  3.45885  2.81094     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     36   0.14476  3.35879  2.78795  3.25843     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     37   2.93249  3.56592  0.11958  3.46834     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     38   3.06699  2.58138  3.11596  0.18220     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     39   2.93249  3.56592  0.11958  3.46834     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     40   3.06699  2.58138  3.11596  0.18220     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     41   3.40835  0.13320  3.45885  2.81094     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     42   3.40835  0.13320  3.45885  2.81094     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     43   0.14476  3.35879  2.78795  3.25843     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     44   3.40835  0.13320  3.45885  2.81094     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     45   0.14476  3.35879  2.78795  3.25843     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01885  3.98087        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_fortytwo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:10:02 2012
NSEQ  56
EFFN  3.489746
CKSUM 3007113563
STATS LOCAL MSV       -7.3786  0.71931
STATS LOCAL VITERBI   -7.7130  0.71931
STATS LOCAL FORWARD   -3.9070  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.57617  1.20386  1.45121  1.35126
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  0.00000        *
      1   3.49296  0.12329  3.53984  2.87236      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
      2   3.00468  2.30260  3.05601  0.21894      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
      3   3.14144  2.62870  3.18756  0.17039      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
      4   3.49296  0.12329  3.53984  2.87236      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
      5   2.19980  0.35082  2.44866  2.31613      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
      6   2.98348  3.64028  0.11157  3.55046      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
      7   2.98348  3.64028  0.11157  3.55046      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
      8   2.98348  3.64028  0.11157  3.55046      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
      9   2.98348  3.64028  0.11157  3.55046      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     10   3.49296  0.12329  3.53984  2.87236     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     11   3.14144  2.62870  3.18756  0.17039     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     12   0.39582  2.58117  2.40355  1.82764     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     13   2.98348  3.64028  0.11157  3.55046     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     14   3.14144  2.62870  3.18756  0.17039     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     15   3.49296  0.12329  3.53984  2.87236     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     16   3.49296  0.12329  3.53984  2.87236     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     17   3.14144  2.62870  3.18756  0.17039     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     18   3.49296  0.12329  3.53984  2.87236     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     19   0.13521  3.43229  2.83561  3.33893     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     20   2.98348  3.64028  0.11157  3.55046     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     21   0.13521  3.43229  2.83561  3.33893     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     22   0.17762  3.27654  2.48713  3.17414     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     23   2.98348  3.64028  0.11157  3.55046     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     24   3.14144  2.62870  3.18756  0.17039     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     25   0.13521  3.43229  2.83561  3.33893     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     26   3.14144  2.62870  3.18756  0.17039     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     27   2.98348  3.64028  0.11157  3.55046     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     28   3.32147  0.16079  3.37394  2.54878     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     29   3.49296  0.12329  3.53984  2.87236     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     30   3.14144  2.62870  3.18756  0.17039     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     31   3.49296  0.12329  3.53984  2.87236     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     32   3.14144  2.62870  3.18756  0.17039     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     33   0.13521  3.43229  2.83561  3.33893     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     34   3.14144  2.62870  3.18756  0.17039     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     35   3.49296  0.12329  3.53984  2.87236     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     36   0.13521  3.43229  2.83561  3.33893     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     37   2.98348  3.64028  0.11157  3.55046     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     38   3.14144  2.62870  3.18756  0.17039     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     39   2.98348  3.64028  0.11157  3.55046     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     40   3.14144  2.62870  3.18756  0.17039     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     41   3.49296  0.12329  3.53984  2.87236     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     42   3.49296  0.12329  3.53984  2.87236     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     43   0.13521  3.43229  2.83561  3.33893     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     44   3.49296  0.12329  3.53984  2.87236     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
     45   0.13521  3.43229  2.83561  3.33893     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01805  4.02352        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_four_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:02:15 2012
NSEQ  4
EFFN  3.433594
CKSUM 2731903192
STATS LOCAL MSV       -7.2109  0.71932
STATS LOCAL VITERBI   -7.7901  0.71932
STATS LOCAL FORWARD   -4.0025  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82067  1.48906  1.25448  1.11695
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  0.00000        *
      1   3.47324  0.12552  3.52097  2.85812      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
      2   0.13738  3.41512  2.82452  3.32011      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
      3   3.47324  0.12552  3.52097  2.85812      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
      4   3.12394  2.61759  3.17074  0.17309      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
      5   3.12394  2.61759  3.17074  0.17309      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
      6   3.47324  0.12552  3.52097  2.85812      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
      7   3.47324  0.12552  3.52097  2.85812      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
      8   3.12394  2.61759  3.17074  0.17309      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
      9   2.97169  3.62301  0.11337  3.53137      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     10   2.97169  3.62301  0.11337  3.53137     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     11   3.12394  2.61759  3.17074  0.17309     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     12   3.12394  2.61759  3.17074  0.17309     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     13   0.13738  3.41512  2.82452  3.32011     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     14   2.97169  3.62301  0.11337  3.53137     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     15   3.12394  2.61759  3.17074  0.17309     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     16   3.47324  0.12552  3.52097  2.85812     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     17   3.47324  0.12552  3.52097  2.85812     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     18   2.97169  3.62301  0.11337  3.53137     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     19   2.97169  3.62301  0.11337  3.53137     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     20   2.97169  3.62301  0.11337  3.53137     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     21   2.97169  3.62301  0.11337  3.53137     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     22   0.13738  3.41512  2.82452  3.32011     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     23   2.97169  3.62301  0.11337  3.53137     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     24   3.12394  2.61759  3.17074  0.17309     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     25   0.13738  3.41512  2.82452  3.32011     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     26   3.12394  2.61759  3.17074  0.17309     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     27   2.97169  3.62301  0.11337  3.53137     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     28   3.12394  2.61759  3.17074  0.17309     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     29   3.12394  2.61759  3.17074  0.17309     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     30   3.12394  2.61759  3.17074  0.17309     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     31   2.97169  3.62301  0.11337  3.53137     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     32   3.12394  2.61759  3.17074  0.17309     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     33   0.13738  3.41512  2.82452  3.32011     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     34   3.12394  2.61759  3.17074  0.17309     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     35   3.47324  0.12552  3.52097  2.85812     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     36   0.13738  3.41512  2.82452  3.32011     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     37   2.97169  3.62301  0.11337  3.53137     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     38   3.12394  2.61759  3.17074  0.17309     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     39   2.97169  3.62301  0.11337  3.53137     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     40   3.12394  2.61759  3.17074  0.17309     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     41   3.47324  0.12552  3.52097  2.85812     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     42   3.47324  0.12552  3.52097  2.85812     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     43   2.97169  3.62301  0.11337  3.53137     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     44   3.12394  2.61759  3.17074  0.17309     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     45   2.42512  0.95399  2.49696  0.81193     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01824  4.01342        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_fourteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:04:22 2012
NSEQ  666
EFFN  3.600014
CKSUM 1820694249
STATS LOCAL MSV       -7.3998  0.71932
STATS LOCAL VITERBI   -7.7922  0.71932
STATS LOCAL FORWARD   -3.9353  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.62347  1.49044  1.32069  1.16937
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  0.00000        *
      1   3.53055  0.11916  3.57577  2.89941      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
      2   0.13119  3.46507  2.85675  3.37489      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
      3   3.53055  0.11916  3.57577  2.89941      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
      4   3.17506  2.65002  3.21987  0.16535      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
      5   3.17506  2.65002  3.21987  0.16535      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
      6   2.68873  1.62150  2.75212  0.39953      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
      7   3.53055  0.11916  3.57577  2.89941      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
      8   3.00580  3.67309  0.10824  3.58679      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
      9   3.00580  3.67309  0.10824  3.58679      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     10   3.00580  3.67309  0.10824  3.58679     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     11   3.17506  2.65002  3.21987  0.16535     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     12   3.17506  2.65002  3.21987  0.16535     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     13   0.13119  3.46507  2.85675  3.37489     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     14   3.17506  2.65002  3.21987  0.16535     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     15   2.14190  3.19865  0.22835  3.08110     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     16   3.53055  0.11916  3.57577  2.89941     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     17   3.53055  0.11916  3.57577  2.89941     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     18   3.17506  2.65002  3.21987  0.16535     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     19   3.00580  3.67309  0.10824  3.58679     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     20   3.00580  3.67309  0.10824  3.58679     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     21   0.13119  3.46507  2.85675  3.37489     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     22   0.13119  3.46507  2.85675  3.37489     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     23   3.00580  3.67309  0.10824  3.58679     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     24   3.17506  2.65002  3.21987  0.16535     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     25   0.13119  3.46507  2.85675  3.37489     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     26   3.17506  2.65002  3.21987  0.16535     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     27   3.00580  3.67309  0.10824  3.58679     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     28   2.47202  1.08199  2.54257  0.69716     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     29   3.23344  0.18765  3.28879  2.36046     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     30   3.17506  2.65002  3.21987  0.16535     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     31   3.00580  3.67309  0.10824  3.58679     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     32   3.17506  2.65002  3.21987  0.16535     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     33   0.13119  3.46507  2.85675  3.37489     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     34   3.17506  2.65002  3.21987  0.16535     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     35   3.53055  0.11916  3.57577  2.89941     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     36   0.13119  3.46507  2.85675  3.37489     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     37   3.00580  3.67309  0.10824  3.58679     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     38   3.17506  2.65002  3.21987  0.16535     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     39   3.00580  3.67309  0.10824  3.58679     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     40   3.17506  2.65002  3.21987  0.16535     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     41   3.53055  0.11916  3.57577  2.89941     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     42   3.53055  0.11916  3.57577  2.89941     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     43   3.00580  3.67309  0.10824  3.58679     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     44   3.17506  2.65002  3.21987  0.16535     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
     45   0.13119  3.46507  2.85675  3.37489     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01770  4.04305        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_nine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:03:24 2012
NSEQ  2
EFFN  2.000000
CKSUM 954821854
STATS LOCAL MSV       -7.3654  0.72822
STATS LOCAL VITERBI   -8.3615  0.72822
STATS LOCAL FORWARD   -3.4843  0.72822
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.51878  1.44901  1.31953  1.27670
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.53331  3.02441  0.20344  2.88069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_nineteena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:05:33 2012
NSEQ  2
EFFN  2.000000
CKSUM 583905888
STATS LOCAL MSV       -7.3831  0.72833
STATS LOCAL VITERBI   -8.4145  0.72833
STATS LOCAL FORWARD   -3.4031  0.72833
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.58651  1.44473  1.32079  1.22885
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_nineteenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:05:40 2012
NSEQ  2
EFFN  2.000000
CKSUM 3878979993
STATS LOCAL MSV       -7.4408  0.72801
STATS LOCAL VITERBI   -8.1409  0.72801
STATS LOCAL FORWARD   -3.5288  0.72801
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.58775  1.39261  1.26747  1.32560
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:01:47 2012
NSEQ  54
EFFN  3.529907
CKSUM 4149572995
STATS LOCAL MSV       -7.2722  0.71932
STATS LOCAL VITERBI   -7.7867  0.71932
STATS LOCAL FORWARD   -3.8680  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81840  1.55884  1.25178  1.07488
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  0.00000        *
      1   3.50682  0.12175  3.55309  2.88235      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
      2   0.13371  3.44437  2.84341  3.35218      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
      3   3.50682  0.12175  3.55309  2.88235      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
      4   3.15380  2.63654  3.19944  0.16852      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
      5   3.15380  2.63654  3.19944  0.16852      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
      6   2.44135  0.91372  2.51314  0.84185      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
      7   3.50682  0.12175  3.55309  2.88235      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
      8   2.99173  3.65239  0.11033  3.56387      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
      9   2.99173  3.65239  0.11033  3.56387      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     10   2.99173  3.65239  0.11033  3.56387     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     11   3.15380  2.63654  3.19944  0.16852     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     12   3.15380  2.63654  3.19944  0.16852     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     13   0.13371  3.44437  2.84341  3.35218     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     14   2.99173  3.65239  0.11033  3.56387     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     15   3.15380  2.63654  3.19944  0.16852     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     16   3.50682  0.12175  3.55309  2.88235     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     17   3.50682  0.12175  3.55309  2.88235     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     18   3.15380  2.63654  3.19944  0.16852     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     19   2.99173  3.65239  0.11033  3.56387     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     20   2.99173  3.65239  0.11033  3.56387     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     21   2.99173  3.65239  0.11033  3.56387     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     22   0.13371  3.44437  2.84341  3.35218     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     23   2.99173  3.65239  0.11033  3.56387     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     24   3.15380  2.63654  3.19944  0.16852     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     25   0.13371  3.44437  2.84341  3.35218     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     26   3.15380  2.63654  3.19944  0.16852     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     27   2.99173  3.65239  0.11033  3.56387     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     28   3.03664  2.35237  3.08677  0.20923     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     29   3.15380  2.63654  3.19944  0.16852     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     30   3.15380  2.63654  3.19944  0.16852     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     31   2.99173  3.65239  0.11033  3.56387     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     32   3.15380  2.63654  3.19944  0.16852     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     33   0.13371  3.44437  2.84341  3.35218     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     34   3.15380  2.63654  3.19944  0.16852     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     35   3.50682  0.12175  3.55309  2.88235     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     36   0.13371  3.44437  2.84341  3.35218     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     37   2.99173  3.65239  0.11033  3.56387     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     38   3.15380  2.63654  3.19944  0.16852     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     39   2.99173  3.65239  0.11033  3.56387     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     40   2.75202  2.56380  3.02067  0.21020     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     41   3.50682  0.12175  3.55309  2.88235     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     42   3.50682  0.12175  3.55309  2.88235     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     43   2.99173  3.65239  0.11033  3.56387     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     44   3.15380  2.63654  3.19944  0.16852     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
     45   2.95621  2.17827  3.00957  0.24152     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01792  4.03068        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_seven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:03:02 2012
NSEQ  7
EFFN  3.421387
CKSUM 3206112293
STATS LOCAL MSV       -7.2541  0.71932
STATS LOCAL VITERBI   -7.7079  0.71932
STATS LOCAL FORWARD   -3.8333  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.62856  1.44393  1.29816  1.22161
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  0.00000        *
      1   3.46890  0.12602  3.51682  2.85498      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
      2   0.13786  3.41135  2.82208  3.31597      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
      3   3.46890  0.12602  3.51682  2.85498      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
      4   3.12010  2.61515  3.16705  0.17368      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
      5   3.12010  2.61515  3.16705  0.17368      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
      6   3.46890  0.12602  3.51682  2.85498      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
      7   3.46890  0.12602  3.51682  2.85498      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
      8   2.96909  3.61920  0.11378  3.52716      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
      9   2.96909  3.61920  0.11378  3.52716      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     10   2.96909  3.61920  0.11378  3.52716     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     11   3.12010  2.61515  3.16705  0.17368     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     12   3.12010  2.61515  3.16705  0.17368     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     13   0.13786  3.41135  2.82208  3.31597     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     14   2.96909  3.61920  0.11378  3.52716     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     15   3.12010  2.61515  3.16705  0.17368     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     16   3.46890  0.12602  3.51682  2.85498     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     17   3.46890  0.12602  3.51682  2.85498     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     18   3.12010  2.61515  3.16705  0.17368     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     19   2.96909  3.61920  0.11378  3.52716     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     20   2.96909  3.61920  0.11378  3.52716     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     21   0.13786  3.41135  2.82208  3.31597     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     22   0.13786  3.41135  2.82208  3.31597     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     23   2.96909  3.61920  0.11378  3.52716     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     24   3.12010  2.61515  3.16705  0.17368     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     25   0.13786  3.41135  2.82208  3.31597     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     26   3.12010  2.61515  3.16705  0.17368     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     27   2.96909  3.61920  0.11378  3.52716     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     28   3.46890  0.12602  3.51682  2.85498     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     29   3.46890  0.12602  3.51682  2.85498     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     30   3.12010  2.61515  3.16705  0.17368     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     31   2.96909  3.61920  0.11378  3.52716     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     32   3.12010  2.61515  3.16705  0.17368     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     33   0.13786  3.41135  2.82208  3.31597     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     34   3.12010  2.61515  3.16705  0.17368     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     35   3.46890  0.12602  3.51682  2.85498     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     36   0.13786  3.41135  2.82208  3.31597     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     37   2.96909  3.61920  0.11378  3.52716     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     38   3.12010  2.61515  3.16705  0.17368     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     39   2.96909  3.61920  0.11378  3.52716     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     40   3.12010  2.61515  3.16705  0.17368     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     41   3.46890  0.12602  3.51682  2.85498     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     42   2.96909  3.61920  0.11378  3.52716     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     43   2.12530  2.15195  1.15062  0.80318     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     44   3.12010  2.61515  3.16705  0.17368     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
     45   0.13786  3.41135  2.82208  3.31597     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01828  4.01121        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_seventeen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:05:06 2012
NSEQ  7
EFFN  3.325684
CKSUM 4279403002
STATS LOCAL MSV       -8.1353  0.71933
STATS LOCAL VITERBI   -7.7508  0.71933
STATS LOCAL FORWARD   -4.0417  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63501  1.44343  1.38603  1.14298
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  0.00000        *
      1   3.43422  0.13008  3.48363  2.82980      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
      2   0.14177  3.38122  2.80255  3.28298      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
      3   3.43422  0.13008  3.48363  2.82980      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
      4   3.08958  2.59576  3.13770  0.17852      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
      5   3.08958  2.59576  3.13770  0.17852      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
      6   3.08958  2.59576  3.13770  0.17852      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
      7   3.43422  0.13008  3.48363  2.82980      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
      8   2.94820  3.58873  0.11705  3.49350      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
      9   2.94820  3.58873  0.11705  3.49350      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     10   2.94820  3.58873  0.11705  3.49350     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     11   3.08958  2.59576  3.13770  0.17852     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     12   3.08958  2.59576  3.13770  0.17852     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     13   3.43422  0.13008  3.48363  2.82980     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     14   3.08958  2.59576  3.13770  0.17852     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     15   0.14177  3.38122  2.80255  3.28298     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     16   3.43422  0.13008  3.48363  2.82980     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     17   3.43422  0.13008  3.48363  2.82980     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     18   3.08958  2.59576  3.13770  0.17852     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     19   2.94820  3.58873  0.11705  3.49350     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     20   2.94820  3.58873  0.11705  3.49350     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     21   0.14177  3.38122  2.80255  3.28298     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     22   0.14177  3.38122  2.80255  3.28298     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     23   2.94820  3.58873  0.11705  3.49350     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     24   3.08958  2.59576  3.13770  0.17852     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     25   0.14177  3.38122  2.80255  3.28298     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     26   3.08958  2.59576  3.13770  0.17852     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     27   2.94820  3.58873  0.11705  3.49350     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     28   3.08958  2.59576  3.13770  0.17852     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     29   3.43422  0.13008  3.48363  2.82980     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     30   3.08958  2.59576  3.13770  0.17852     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     31   2.94820  3.58873  0.11705  3.49350     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     32   3.08958  2.59576  3.13770  0.17852     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     33   0.14177  3.38122  2.80255  3.28298     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     34   3.08958  2.59576  3.13770  0.17852     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     35   3.43422  0.13008  3.48363  2.82980     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     36   0.14177  3.38122  2.80255  3.28298     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     37   2.94820  3.58873  0.11705  3.49350     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     38   3.08958  2.59576  3.13770  0.17852     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     39   2.94820  3.58873  0.11705  3.49350     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     40   3.08958  2.59576  3.13770  0.17852     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     41   3.43422  0.13008  3.48363  2.82980     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     42   3.43422  0.13008  3.48363  2.82980     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     43   2.94820  3.58873  0.11705  3.49350     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     44   3.08958  2.59576  3.13770  0.17852     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     45   0.14177  3.38122  2.80255  3.28298     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01860  3.99373        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_sixa_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:02:43 2012
NSEQ  61
EFFN  3.503479
CKSUM 1654444282
STATS LOCAL MSV       -7.3075  0.71932
STATS LOCAL VITERBI   -7.9016  0.71932
STATS LOCAL FORWARD   -3.9539  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.71253  1.45084  1.31464  1.14997
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  0.00000        *
      1   3.49772  0.12276  3.54439  2.87580      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
      2   0.13470  3.43644  2.83829  3.34348      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
      3   3.49772  0.12276  3.54439  2.87580      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
      4   3.14568  2.63139  3.19163  0.16975      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
      5   3.14568  2.63139  3.19163  0.16975      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
      6   3.14568  2.63139  3.19163  0.16975      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
      7   3.49772  0.12276  3.54439  2.87580      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
      8   2.98632  3.64444  0.11114  3.55507      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
      9   2.98632  3.64444  0.11114  3.55507      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     10   2.98632  3.64444  0.11114  3.55507     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     11   3.14568  2.63139  3.19163  0.16975     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     12   3.14568  2.63139  3.19163  0.16975     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     13   0.13470  3.43644  2.83829  3.34348     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     14   2.98632  3.64444  0.11114  3.55507     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     15   3.14568  2.63139  3.19163  0.16975     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     16   3.49772  0.12276  3.54439  2.87580     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     17   3.49772  0.12276  3.54439  2.87580     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     18   3.14568  2.63139  3.19163  0.16975     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     19   2.98632  3.64444  0.11114  3.55507     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     20   2.98632  3.64444  0.11114  3.55507     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     21   0.13470  3.43644  2.83829  3.34348     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     22   0.13470  3.43644  2.83829  3.34348     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     23   2.98632  3.64444  0.11114  3.55507     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     24   3.14568  2.63139  3.19163  0.16975     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     25   0.13470  3.43644  2.83829  3.34348     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     26   3.14568  2.63139  3.19163  0.16975     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     27   2.98632  3.64444  0.11114  3.55507     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     28   2.60573  1.49842  2.67155  0.45646     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     29   3.49772  0.12276  3.54439  2.87580     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     30   3.14568  2.63139  3.19163  0.16975     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     31   2.98632  3.64444  0.11114  3.55507     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     32   3.14568  2.63139  3.19163  0.16975     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     33   0.13470  3.43644  2.83829  3.34348     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     34   3.14568  2.63139  3.19163  0.16975     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     35   3.49772  0.12276  3.54439  2.87580     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     36   0.13470  3.43644  2.83829  3.34348     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     37   2.98632  3.64444  0.11114  3.55507     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     38   3.14568  2.63139  3.19163  0.16975     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     39   2.98632  3.64444  0.11114  3.55507     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     40   3.14568  2.63139  3.19163  0.16975     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     41   3.49772  0.12276  3.54439  2.87580     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     42   3.49772  0.12276  3.54439  2.87580     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     43   2.98632  3.64444  0.11114  3.55507     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     44   3.14568  2.63139  3.19163  0.16975     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
     45   1.86867  0.40815  2.56286  2.26621     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01801  4.02597        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_sixb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:02:50 2012
NSEQ  102
EFFN  3.296448
CKSUM 2052102467
STATS LOCAL MSV       -8.0385  0.71933
STATS LOCAL VITERBI   -7.7229  0.71933
STATS LOCAL FORWARD   -3.9548  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72566  1.31760  1.32137  1.24689
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  0.00000        *
      1   3.42339  0.13137  3.47326  2.82191      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
      2   0.14301  3.37183  2.79644  3.27269      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
      3   3.42339  0.13137  3.47326  2.82191      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
      4   3.08010  2.58973  3.12858  0.18005      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
      5   3.08010  2.58973  3.12858  0.18005      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
      6   3.42339  0.13137  3.47326  2.82191      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
      7   3.42339  0.13137  3.47326  2.82191      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
      8   2.94164  3.57919  0.11810  3.48297      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
      9   2.94164  3.57919  0.11810  3.48297      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     10   2.94164  3.57919  0.11810  3.48297     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     11   3.08010  2.58973  3.12858  0.18005     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     12   3.08010  2.58973  3.12858  0.18005     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     13   3.42339  0.13137  3.47326  2.82191     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     14   2.94164  3.57919  0.11810  3.48297     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     15   3.08010  2.58973  3.12858  0.18005     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     16   3.42339  0.13137  3.47326  2.82191     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     17   3.42339  0.13137  3.47326  2.82191     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     18   3.08010  2.58973  3.12858  0.18005     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     19   2.94164  3.57919  0.11810  3.48297     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     20   2.94164  3.57919  0.11810  3.48297     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     21   0.14301  3.37183  2.79644  3.27269     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     22   0.14301  3.37183  2.79644  3.27269     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     23   2.94164  3.57919  0.11810  3.48297     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     24   3.08010  2.58973  3.12858  0.18005     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     25   0.14301  3.37183  2.79644  3.27269     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     26   3.08010  2.58973  3.12858  0.18005     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     27   2.94164  3.57919  0.11810  3.48297     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     28   3.30844  0.15686  3.36163  2.60466     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     29   3.23739  0.17438  3.29275  2.48169     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     30   3.08010  2.58973  3.12858  0.18005     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     31   2.94164  3.57919  0.11810  3.48297     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     32   3.08010  2.58973  3.12858  0.18005     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     33   0.14301  3.37183  2.79644  3.27269     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     34   3.08010  2.58973  3.12858  0.18005     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     35   3.42339  0.13137  3.47326  2.82191     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     36   0.14301  3.37183  2.79644  3.27269     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     37   2.94164  3.57919  0.11810  3.48297     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     38   3.08010  2.58973  3.12858  0.18005     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     39   2.94164  3.57919  0.11810  3.48297     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     40   3.08010  2.58973  3.12858  0.18005     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     41   3.42339  0.13137  3.47326  2.82191     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     42   3.42339  0.13137  3.47326  2.82191     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     43   2.94164  3.57919  0.11810  3.48297     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     44   3.08010  2.58973  3.12858  0.18005     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
     45   0.14301  3.37183  2.79644  3.27269     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01870  3.98833        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_sixteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:04:49 2012
NSEQ  142
EFFN  3.436462
CKSUM 3135158707
STATS LOCAL MSV       -7.3205  0.71932
STATS LOCAL VITERBI   -7.7781  0.71932
STATS LOCAL FORWARD   -3.9816  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.65337  1.32188  1.37654  1.23956
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  0.00000        *
      1   3.47425  0.12541  3.52195  2.85885      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
      2   0.13726  3.41601  2.82509  3.32108      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
      3   3.47425  0.12541  3.52195  2.85885      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
      4   3.12484  2.61816  3.17160  0.17295      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
      5   3.12484  2.61816  3.17160  0.17295      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
      6   3.28557  0.16759  3.33927  2.50815      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
      7   3.47425  0.12541  3.52195  2.85885      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
      8   2.97230  3.62390  0.11328  3.53235      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
      9   2.97230  3.62390  0.11328  3.53235      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     10   2.97230  3.62390  0.11328  3.53235     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     11   3.12484  2.61816  3.17160  0.17295     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     12   3.12484  2.61816  3.17160  0.17295     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     13   0.13726  3.41601  2.82509  3.32108     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     14   3.12484  2.61816  3.17160  0.17295     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     15   2.98834  0.22123  2.76748  2.46186     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     16   3.47425  0.12541  3.52195  2.85885     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     17   3.47425  0.12541  3.52195  2.85885     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     18   3.12484  2.61816  3.17160  0.17295     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     19   2.97230  3.62390  0.11328  3.53235     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     20   2.97230  3.62390  0.11328  3.53235     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     21   0.33248  2.88183  1.81285  2.75452     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     22   0.13726  3.41601  2.82509  3.32108     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     23   2.97230  3.62390  0.11328  3.53235     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     24   3.12484  2.61816  3.17160  0.17295     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     25   0.13726  3.41601  2.82509  3.32108     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     26   3.12484  2.61816  3.17160  0.17295     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     27   2.97230  3.62390  0.11328  3.53235     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     28   3.28557  0.16759  3.33927  2.50815     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     29   3.47425  0.12541  3.52195  2.85885     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     30   3.12484  2.61816  3.17160  0.17295     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     31   2.97230  3.62390  0.11328  3.53235     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     32   3.12484  2.61816  3.17160  0.17295     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     33   0.13726  3.41601  2.82509  3.32108     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     34   3.12484  2.61816  3.17160  0.17295     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     35   3.47425  0.12541  3.52195  2.85885     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     36   0.13726  3.41601  2.82509  3.32108     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     37   2.97230  3.62390  0.11328  3.53235     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     38   3.12484  2.61816  3.17160  0.17295     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     39   2.97230  3.62390  0.11328  3.53235     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     40   3.12484  2.61816  3.17160  0.17295     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     41   3.47425  0.12541  3.52195  2.85885     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     42   3.47425  0.12541  3.52195  2.85885     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     43   2.97230  3.62390  0.11328  3.53235     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     44   3.12484  2.61816  3.17160  0.17295     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
     45   0.13726  3.41601  2.82509  3.32108     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01823  4.01394        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_ten_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:03:33 2012
NSEQ  54
EFFN  3.470581
CKSUM 1760084942
STATS LOCAL MSV       -7.4293  0.71931
STATS LOCAL VITERBI   -7.7359  0.71931
STATS LOCAL FORWARD   -3.9826  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.71129  1.36466  1.27266  1.25944
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  0.00000        *
      1   3.48627  0.12404  3.53344  2.86754      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
      2   0.13594  3.42647  2.83185  3.33254      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
      3   3.48627  0.12404  3.53344  2.86754      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
      4   3.13549  2.62492  3.18184  0.17130      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
      5   2.60551  1.51324  2.67124  0.45134      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
      6   3.48627  0.12404  3.53344  2.86754      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
      7   3.48627  0.12404  3.53344  2.86754      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
      8   2.97949  3.63442  0.11218  3.54399      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
      9   2.97949  3.63442  0.11218  3.54399      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     10   2.97949  3.63442  0.11218  3.54399     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     11   3.13549  2.62492  3.18184  0.17130     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     12   3.13549  2.62492  3.18184  0.17130     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     13   0.13594  3.42647  2.83185  3.33254     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     14   2.97949  3.63442  0.11218  3.54399     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     15   3.13549  2.62492  3.18184  0.17130     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     16   3.48627  0.12404  3.53344  2.86754     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     17   3.48627  0.12404  3.53344  2.86754     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     18   3.13549  2.62492  3.18184  0.17130     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     19   2.97949  3.63442  0.11218  3.54399     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     20   2.97949  3.63442  0.11218  3.54399     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     21   2.10332  3.14365  0.24059  3.02289     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     22   0.13594  3.42647  2.83185  3.33254     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     23   2.27347  3.25435  0.20437  3.14004     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     24   3.13549  2.62492  3.18184  0.17130     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     25   0.13594  3.42647  2.83185  3.33254     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     26   3.13549  2.62492  3.18184  0.17130     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     27   2.97949  3.63442  0.11218  3.54399     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     28   3.48627  0.12404  3.53344  2.86754     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     29   3.48627  0.12404  3.53344  2.86754     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     30   3.13549  2.62492  3.18184  0.17130     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     31   2.97949  3.63442  0.11218  3.54399     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     32   3.13549  2.62492  3.18184  0.17130     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     33   0.13594  3.42647  2.83185  3.33254     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     34   3.13549  2.62492  3.18184  0.17130     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     35   3.48627  0.12404  3.53344  2.86754     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     36   0.13594  3.42647  2.83185  3.33254     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     37   2.81765  3.31135  0.16502  2.88403     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     38   3.13549  2.62492  3.18184  0.17130     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     39   2.97949  3.63442  0.11218  3.54399     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     40   3.13549  2.62492  3.18184  0.17130     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     41   3.48627  0.12404  3.53344  2.86754     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     42   3.48627  0.12404  3.53344  2.86754     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     43   2.97949  3.63442  0.11218  3.54399     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     44   3.13549  2.62492  3.18184  0.17130     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
     45   0.13594  3.42647  2.83185  3.33254     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01811  4.02008        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_thirteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:04:10 2012
NSEQ  81
EFFN  3.267883
CKSUM 2455870292
STATS LOCAL MSV       -8.1309  0.71934
STATS LOCAL VITERBI   -7.7106  0.71934
STATS LOCAL FORWARD   -4.0603  0.71934
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72312  1.37867  1.25801  1.25400
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  0.00000        *
      1   3.41270  0.13267  3.46301  2.81411      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
      2   0.14426  3.36256  2.79041  3.26255      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
      3   3.41270  0.13267  3.46301  2.81411      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
      4   3.07077  2.58379  3.11961  0.18158      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
      5   3.07077  2.58379  3.11961  0.18158      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
      6   3.41270  0.13267  3.46301  2.81411      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
      7   3.41270  0.13267  3.46301  2.81411      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
      8   2.93514  3.56976  0.11915  3.47257      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
      9   2.93514  3.56976  0.11915  3.47257      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     10   2.93514  3.56976  0.11915  3.47257     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     11   3.07077  2.58379  3.11961  0.18158     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     12   3.07077  2.58379  3.11961  0.18158     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     13   0.14426  3.36256  2.79041  3.26255     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     14   2.98399  2.37647  3.03577  0.21258     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     15   2.93514  3.56976  0.11915  3.47257     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     16   3.41270  0.13267  3.46301  2.81411     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     17   3.41270  0.13267  3.46301  2.81411     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     18   3.07077  2.58379  3.11961  0.18158     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     19   2.93514  3.56976  0.11915  3.47257     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     20   2.93514  3.56976  0.11915  3.47257     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     21   2.93514  3.56976  0.11915  3.47257     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     22   0.14426  3.36256  2.79041  3.26255     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     23   2.93514  3.56976  0.11915  3.47257     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     24   3.07077  2.58379  3.11961  0.18158     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     25   0.14426  3.36256  2.79041  3.26255     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     26   3.07077  2.58379  3.11961  0.18158     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     27   2.93514  3.56976  0.11915  3.47257     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     28   3.41270  0.13267  3.46301  2.81411     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     29   3.41270  0.13267  3.46301  2.81411     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     30   3.07077  2.58379  3.11961  0.18158     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     31   2.93514  3.56976  0.11915  3.47257     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     32   3.07077  2.58379  3.11961  0.18158     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     33   0.14426  3.36256  2.79041  3.26255     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     34   3.07077  2.58379  3.11961  0.18158     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     35   3.41270  0.13267  3.46301  2.81411     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     36   0.14426  3.36256  2.79041  3.26255     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     37   2.93514  3.56976  0.11915  3.47257     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     38   3.07077  2.58379  3.11961  0.18158     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     39   2.93514  3.56976  0.11915  3.47257     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     40   3.07077  2.58379  3.11961  0.18158     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     41   3.41270  0.13267  3.46301  2.81411     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     42   3.41270  0.13267  3.46301  2.81411     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     43   2.93514  3.56976  0.11915  3.47257     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     44   3.07077  2.58379  3.11961  0.18158     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
     45   0.14426  3.36256  2.79041  3.26255     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01881  3.98302        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_thirty_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:08:07 2012
NSEQ  15
EFFN  3.299561
CKSUM 1307625746
STATS LOCAL MSV       -8.0463  0.71932
STATS LOCAL VITERBI   -7.8277  0.71932
STATS LOCAL FORWARD   -4.0097  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.75107  1.25569  1.24967  1.36676
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  0.00000        *
      1   0.14288  3.37283  2.79710  3.27379      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
      2   3.42454  0.13123  3.47436  2.82276      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
      3   3.08112  2.59037  3.12956  0.17989      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
      4   3.42454  0.13123  3.47436  2.82276      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
      5   3.42454  0.13123  3.47436  2.82276      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
      6   3.42454  0.13123  3.47436  2.82276      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
      7   2.94234  3.58021  0.11799  3.48410      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
      8   2.94234  3.58021  0.11799  3.48410      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
      9   2.94234  3.58021  0.11799  3.48410      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     10   3.08112  2.59037  3.12956  0.17989     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     11   3.08112  2.59037  3.12956  0.17989     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     12   3.42454  0.13123  3.47436  2.82276     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     13   0.42062  2.72717  1.59408  2.59210     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     14   2.94234  3.58021  0.11799  3.48410     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     15   3.42454  0.13123  3.47436  2.82276     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     16   3.42454  0.13123  3.47436  2.82276     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     17   3.08112  2.59037  3.12956  0.17989     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     18   3.42454  0.13123  3.47436  2.82276     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     19   2.94234  3.58021  0.11799  3.48410     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     20   2.94234  3.58021  0.11799  3.48410     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     21   2.94234  3.58021  0.11799  3.48410     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     22   0.14288  3.37283  2.79710  3.27379     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     23   2.94234  3.58021  0.11799  3.48410     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     24   3.08112  2.59037  3.12956  0.17989     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     25   0.14288  3.37283  2.79710  3.27379     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     26   3.08112  2.59037  3.12956  0.17989     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     27   2.94234  3.58021  0.11799  3.48410     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     28   3.42454  0.13123  3.47436  2.82276     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     29   3.42454  0.13123  3.47436  2.82276     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     30   3.08112  2.59037  3.12956  0.17989     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     31   2.94234  3.58021  0.11799  3.48410     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     32   3.08112  2.59037  3.12956  0.17989     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     33   0.14288  3.37283  2.79710  3.27379     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     34   3.08112  2.59037  3.12956  0.17989     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     35   3.42454  0.13123  3.47436  2.82276     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     36   0.14288  3.37283  2.79710  3.27379     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     37   2.94234  3.58021  0.11799  3.48410     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     38   3.08112  2.59037  3.12956  0.17989     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     39   2.94234  3.58021  0.11799  3.48410     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     40   3.08112  2.59037  3.12956  0.17989     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     41   3.42454  0.13123  3.47436  2.82276     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     42   3.42454  0.13123  3.47436  2.82276     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     43   2.94234  3.58021  0.11799  3.48410     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     44   3.08112  2.59037  3.12956  0.17989     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
     45   0.14288  3.37283  2.79710  3.27379     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01869  3.98890        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_thirtyeight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:09:27 2012
NSEQ  32
EFFN  3.347656
CKSUM 3610209238
STATS LOCAL MSV       -8.0410  0.71931
STATS LOCAL VITERBI   -7.5823  0.71931
STATS LOCAL FORWARD   -4.2622  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82826  1.23825  1.32178  1.26317
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  0.00000        *
      1   3.44228  0.12912  3.49135  2.83567      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
      2   3.09665  2.60026  3.14450  0.17739      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
      3   3.09665  2.60026  3.14450  0.17739      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
      4   3.44228  0.12912  3.49135  2.83567      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
      5   3.44228  0.12912  3.49135  2.83567      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
      6   2.95307  3.59583  0.11628  3.50134      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
      7   2.95307  3.59583  0.11628  3.50134      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
      8   2.95307  3.59583  0.11628  3.50134      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
      9   3.44228  0.12912  3.49135  2.83567      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     10   3.09665  2.60026  3.14450  0.17739     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     11   3.44228  0.12912  3.49135  2.83567     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     12   3.09665  2.60026  3.14450  0.17739     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     13   3.44228  0.12912  3.49135  2.83567     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     14   3.09665  2.60026  3.14450  0.17739     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     15   0.14085  3.38823  2.80709  3.29064     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     16   3.44228  0.12912  3.49135  2.83567     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     17   2.52787  1.40265  2.59570  0.51144     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     18   3.44228  0.12912  3.49135  2.83567     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     19   2.95307  3.59583  0.11628  3.50134     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     20   2.95307  3.59583  0.11628  3.50134     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     21   2.95307  3.59583  0.11628  3.50134     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     22   0.14085  3.38823  2.80709  3.29064     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     23   2.95307  3.59583  0.11628  3.50134     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     24   3.09665  2.60026  3.14450  0.17739     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     25   0.14085  3.38823  2.80709  3.29064     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     26   3.09665  2.60026  3.14450  0.17739     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     27   2.95307  3.59583  0.11628  3.50134     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     28   3.44228  0.12912  3.49135  2.83567     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     29   3.44228  0.12912  3.49135  2.83567     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     30   3.09665  2.60026  3.14450  0.17739     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     31   2.95307  3.59583  0.11628  3.50134     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     32   3.09665  2.60026  3.14450  0.17739     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     33   0.14085  3.38823  2.80709  3.29064     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     34   3.09665  2.60026  3.14450  0.17739     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     35   3.44228  0.12912  3.49135  2.83567     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     36   0.14085  3.38823  2.80709  3.29064     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     37   2.95307  3.59583  0.11628  3.50134     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     38   3.09665  2.60026  3.14450  0.17739     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     39   2.95307  3.59583  0.11628  3.50134     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     40   3.09665  2.60026  3.14450  0.17739     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     41   3.44228  0.12912  3.49135  2.83567     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     42   3.44228  0.12912  3.49135  2.83567     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     43   2.95307  3.59583  0.11628  3.50134     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     44   3.09665  2.60026  3.14450  0.17739     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     45   0.14085  3.38823  2.80709  3.29064     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01853  3.99777        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_thirtyfive_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:08:49 2012
NSEQ  2
EFFN  2.000000
CKSUM 2498029638
STATS LOCAL MSV       -7.4409  0.72903
STATS LOCAL VITERBI   -8.4009  0.72903
STATS LOCAL FORWARD   -3.3767  0.72903
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.51428  1.48093  1.37290  1.20652
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.15554  1.00938  2.23102  0.88601      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   0.23862  2.84929  2.43386  2.70756     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_thirtyfour_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:08:38 2012
NSEQ  2
EFFN  2.000000
CKSUM 3688506537
STATS LOCAL MSV       -7.4526  0.72833
STATS LOCAL VITERBI   -8.4105  0.72833
STATS LOCAL FORWARD   -3.4748  0.72833
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.58650  1.44503  1.32078  1.22863
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_thirtynine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:09:38 2012
NSEQ  9
EFFN  3.370605
CKSUM 1650032649
STATS LOCAL MSV       -7.2507  0.71932
STATS LOCAL VITERBI   -7.7539  0.71932
STATS LOCAL FORWARD   -4.0767  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.50750  1.27850  1.23306  1.56693
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  0.00000        *
      1   0.13990  3.39548  2.81180  3.29859      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
      2   3.45064  0.12814  3.49935  2.84174      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
      3   0.72078  2.53778  1.06916  2.39374      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
      4   0.13990  3.39548  2.81180  3.29859      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
      5   3.45064  0.12814  3.49935  2.84174      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
      6   3.45064  0.12814  3.49935  2.84174      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
      7   2.95812  3.60318  0.11549  3.50945      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
      8   2.95812  3.60318  0.11549  3.50945      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
      9   2.95812  3.60318  0.11549  3.50945      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     10   2.95812  3.60318  0.11549  3.50945     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     11   0.13990  3.39548  2.81180  3.29859     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     12   2.70591  0.39851  2.77457  1.61197     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     13   3.45064  0.12814  3.49935  2.84174     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     14   0.13990  3.39548  2.81180  3.29859     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     15   3.10400  2.60493  3.15157  0.17622     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     16   3.45064  0.12814  3.49935  2.84174     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     17   3.45064  0.12814  3.49935  2.84174     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     18   3.45064  0.12814  3.49935  2.84174     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     19   2.95812  3.60318  0.11549  3.50945     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     20   2.95812  3.60318  0.11549  3.50945     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     21   2.95812  3.60318  0.11549  3.50945     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     22   0.13990  3.39548  2.81180  3.29859     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     23   2.95812  3.60318  0.11549  3.50945     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     24   3.10400  2.60493  3.15157  0.17622     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     25   0.13990  3.39548  2.81180  3.29859     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     26   3.10400  2.60493  3.15157  0.17622     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     27   2.95812  3.60318  0.11549  3.50945     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     28   3.45064  0.12814  3.49935  2.84174     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     29   3.45064  0.12814  3.49935  2.84174     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     30   3.10400  2.60493  3.15157  0.17622     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     31   2.95812  3.60318  0.11549  3.50945     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     32   3.10400  2.60493  3.15157  0.17622     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     33   0.13990  3.39548  2.81180  3.29859     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     34   3.10400  2.60493  3.15157  0.17622     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     35   3.45064  0.12814  3.49935  2.84174     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     36   0.13990  3.39548  2.81180  3.29859     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     37   2.95812  3.60318  0.11549  3.50945     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     38   3.10400  2.60493  3.15157  0.17622     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     39   2.95812  3.60318  0.11549  3.50945     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     40   3.10400  2.60493  3.15157  0.17622     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     41   3.45064  0.12814  3.49935  2.84174     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     42   3.45064  0.12814  3.49935  2.84174     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     43   2.95812  3.60318  0.11549  3.50945     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     44   3.10400  2.60493  3.15157  0.17622     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
     45   0.13990  3.39548  2.81180  3.29859     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01845  4.00197        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_thirtyseven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:09:16 2012
NSEQ  7
EFFN  3.298340
CKSUM 3156643514
STATS LOCAL MSV       -7.8856  0.71932
STATS LOCAL VITERBI   -7.8119  0.71932
STATS LOCAL FORWARD   -4.3505  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72989  1.31007  1.38906  1.19210
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  0.00000        *
      1   3.42409  0.13129  3.47393  2.82243      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
      2   3.08072  2.59012  3.12917  0.17995      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
      3   3.08072  2.59012  3.12917  0.17995      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
      4   3.42409  0.13129  3.47393  2.82243      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
      5   3.08072  2.59012  3.12917  0.17995      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
      6   2.94206  3.57981  0.11803  3.48366      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
      7   2.94206  3.57981  0.11803  3.48366      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
      8   2.94206  3.57981  0.11803  3.48366      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
      9   3.42409  0.13129  3.47393  2.82243      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     10   3.08072  2.59012  3.12917  0.17995     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     11   3.42409  0.13129  3.47393  2.82243     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     12   3.08072  2.59012  3.12917  0.17995     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     13   3.42409  0.13129  3.47393  2.82243     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     14   3.08072  2.59012  3.12917  0.17995     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     15   0.14293  3.37244  2.79684  3.27336     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     16   3.42409  0.13129  3.47393  2.82243     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     17   3.08072  2.59012  3.12917  0.17995     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     18   3.42409  0.13129  3.47393  2.82243     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     19   0.14293  3.37244  2.79684  3.27336     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     20   2.94206  3.57981  0.11803  3.48366     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     21   2.94206  3.57981  0.11803  3.48366     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     22   0.14293  3.37244  2.79684  3.27336     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     23   2.94206  3.57981  0.11803  3.48366     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     24   3.08072  2.59012  3.12917  0.17995     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     25   0.14293  3.37244  2.79684  3.27336     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     26   3.08072  2.59012  3.12917  0.17995     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     27   2.94206  3.57981  0.11803  3.48366     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     28   3.42409  0.13129  3.47393  2.82243     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     29   3.42409  0.13129  3.47393  2.82243     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     30   3.08072  2.59012  3.12917  0.17995     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     31   2.94206  3.57981  0.11803  3.48366     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     32   3.08072  2.59012  3.12917  0.17995     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     33   0.14293  3.37244  2.79684  3.27336     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     34   3.08072  2.59012  3.12917  0.17995     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     35   3.42409  0.13129  3.47393  2.82243     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     36   0.14293  3.37244  2.79684  3.27336     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     37   2.94206  3.57981  0.11803  3.48366     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     38   3.08072  2.59012  3.12917  0.17995     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     39   2.94206  3.57981  0.11803  3.48366     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     40   3.08072  2.59012  3.12917  0.17995     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     41   3.42409  0.13129  3.47393  2.82243     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     42   3.42409  0.13129  3.47393  2.82243     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     43   2.94206  3.57981  0.11803  3.48366     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     44   3.08072  2.59012  3.12917  0.17995     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     45   0.14293  3.37244  2.79684  3.27336     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01870  3.98868        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_thirtysix_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:09:02 2012
NSEQ  5
EFFN  3.325195
CKSUM 2741607073
STATS LOCAL MSV       -8.1122  0.71933
STATS LOCAL VITERBI   -7.8558  0.71933
STATS LOCAL FORWARD   -4.0391  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.54604  1.35561  1.25272  1.41307
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  0.00000        *
      1   0.14179  3.38107  2.80245  3.28281      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      2   3.43404  0.13010  3.48346  2.82967      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      3   3.08942  2.59566  3.13755  0.17855      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      4   0.14179  3.38107  2.80245  3.28281      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      5   3.43404  0.13010  3.48346  2.82967      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      6   3.43404  0.13010  3.48346  2.82967      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      7   2.94809  3.58857  0.11707  3.49333      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      8   2.94809  3.58857  0.11707  3.49333      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      9   2.94809  3.58857  0.11707  3.49333      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     10   3.08942  2.59566  3.13755  0.17855     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     11   3.08942  2.59566  3.13755  0.17855     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     12   0.14179  3.38107  2.80245  3.28281     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     13   3.43404  0.13010  3.48346  2.82967     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     14   0.14179  3.38107  2.80245  3.28281     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     15   2.94809  3.58857  0.11707  3.49333     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     16   3.43404  0.13010  3.48346  2.82967     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     17   2.43340  0.73754  2.50592  1.04307     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     18   3.43404  0.13010  3.48346  2.82967     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     19   2.94809  3.58857  0.11707  3.49333     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     20   2.94809  3.58857  0.11707  3.49333     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     21   2.94809  3.58857  0.11707  3.49333     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     22   0.14179  3.38107  2.80245  3.28281     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     23   2.94809  3.58857  0.11707  3.49333     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     24   3.08942  2.59566  3.13755  0.17855     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     25   0.14179  3.38107  2.80245  3.28281     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     26   3.08942  2.59566  3.13755  0.17855     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     27   2.94809  3.58857  0.11707  3.49333     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     28   3.43404  0.13010  3.48346  2.82967     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     29   3.43404  0.13010  3.48346  2.82967     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     30   3.08942  2.59566  3.13755  0.17855     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     31   2.94809  3.58857  0.11707  3.49333     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     32   3.08942  2.59566  3.13755  0.17855     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     33   0.14179  3.38107  2.80245  3.28281     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     34   3.08942  2.59566  3.13755  0.17855     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     35   3.43404  0.13010  3.48346  2.82967     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     36   0.14179  3.38107  2.80245  3.28281     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     37   2.94809  3.58857  0.11707  3.49333     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     38   3.08942  2.59566  3.13755  0.17855     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     39   2.94809  3.58857  0.11707  3.49333     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     40   3.08942  2.59566  3.13755  0.17855     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     41   3.43404  0.13010  3.48346  2.82967     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     42   3.43404  0.13010  3.48346  2.82967     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     43   2.94809  3.58857  0.11707  3.49333     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     44   3.08942  2.59566  3.13755  0.17855     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     45   0.14179  3.38107  2.80245  3.28281     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01860  3.99364        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_thirtythree_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:08:25 2012
NSEQ  6
EFFN  3.377930
CKSUM 3964629881
STATS LOCAL MSV       -7.3148  0.71932
STATS LOCAL VITERBI   -7.7351  0.71932
STATS LOCAL FORWARD   -3.9782  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.70369  1.37651  1.27975  1.24680
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  0.00000        *
      1   3.45329  0.12783  3.50189  2.84367      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
      2   0.13960  3.39779  2.81330  3.30112      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
      3   3.45329  0.12783  3.50189  2.84367      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
      4   3.10634  2.60641  3.15381  0.17585      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
      5   3.10634  2.60641  3.15381  0.17585      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
      6   3.45329  0.12783  3.50189  2.84367      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
      7   3.45329  0.12783  3.50189  2.84367      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
      8   2.95971  3.60551  0.11524  3.51203      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
      9   2.95971  3.60551  0.11524  3.51203      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     10   2.95971  3.60551  0.11524  3.51203     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     11   3.10634  2.60641  3.15381  0.17585     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     12   3.10634  2.60641  3.15381  0.17585     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     13   0.13960  3.39779  2.81330  3.30112     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     14   2.95971  3.60551  0.11524  3.51203     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     15   3.10634  2.60641  3.15381  0.17585     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     16   3.45329  0.12783  3.50189  2.84367     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     17   3.45329  0.12783  3.50189  2.84367     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     18   3.10634  2.60641  3.15381  0.17585     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     19   2.95971  3.60551  0.11524  3.51203     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     20   2.95971  3.60551  0.11524  3.51203     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     21   1.35702  2.66681  0.52246  2.52523     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     22   0.13960  3.39779  2.81330  3.30112     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     23   2.95971  3.60551  0.11524  3.51203     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     24   3.10634  2.60641  3.15381  0.17585     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     25   0.13960  3.39779  2.81330  3.30112     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     26   3.10634  2.60641  3.15381  0.17585     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     27   2.95971  3.60551  0.11524  3.51203     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     28   3.45329  0.12783  3.50189  2.84367     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     29   3.45329  0.12783  3.50189  2.84367     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     30   3.10634  2.60641  3.15381  0.17585     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     31   2.95971  3.60551  0.11524  3.51203     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     32   3.10634  2.60641  3.15381  0.17585     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     33   0.13960  3.39779  2.81330  3.30112     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     34   3.10634  2.60641  3.15381  0.17585     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     35   3.45329  0.12783  3.50189  2.84367     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     36   0.13960  3.39779  2.81330  3.30112     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     37   2.95971  3.60551  0.11524  3.51203     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     38   3.10634  2.60641  3.15381  0.17585     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     39   2.95971  3.60551  0.11524  3.51203     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     40   3.10634  2.60641  3.15381  0.17585     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     41   3.45329  0.12783  3.50189  2.84367     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     42   3.45329  0.12783  3.50189  2.84367     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     43   2.95971  3.60551  0.11524  3.51203     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     44   3.10634  2.60641  3.15381  0.17585     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
     45   0.13960  3.39779  2.81330  3.30112     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01842  4.00331        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_thirtytwo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:08:16 2012
NSEQ  3
EFFN  3.000000
CKSUM 674843736
STATS LOCAL MSV       -8.1333  0.72019
STATS LOCAL VITERBI   -7.8697  0.72019
STATS LOCAL FORWARD   -3.9771  0.72019
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.71592  1.26204  1.26107  1.37130
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.86982  3.47591  0.13017  3.36931      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.97980  2.52563  3.03204  0.19727     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.97980  2.52563  3.03204  0.19727     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   3.30705  0.14631  3.36166  2.73626     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.86982  3.47591  0.13017  3.36931     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   3.30705  0.14631  3.36166  2.73626     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   0.15719  3.27118  2.73043  3.16274     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.86982  3.47591  0.13017  3.36931     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:02:06 2012
NSEQ  183
EFFN  3.308945
CKSUM 3389557377
STATS LOCAL MSV       -7.9922  0.71932
STATS LOCAL VITERBI   -7.8208  0.71932
STATS LOCAL FORWARD   -3.8675  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81846  1.51995  1.19935  1.14693
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  0.00000        *
      1   3.42803  0.13081  3.47770  2.82530      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
      2   0.14248  3.37586  2.79906  3.27710      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
      3   3.42803  0.13081  3.47770  2.82530      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
      4   3.08416  2.59231  3.13249  0.17939      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
      5   3.04267  2.48950  3.09234  0.19365      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
      6   3.42803  0.13081  3.47770  2.82530      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
      7   3.42803  0.13081  3.47770  2.82530      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
      8   2.94445  3.58328  0.11765  3.48749      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
      9   2.94445  3.58328  0.11765  3.48749      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     10   2.94445  3.58328  0.11765  3.48749     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     11   3.08416  2.59231  3.13249  0.17939     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     12   3.08416  2.59231  3.13249  0.17939     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     13   0.14248  3.37586  2.79906  3.27710     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     14   2.94445  3.58328  0.11765  3.48749     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     15   3.08416  2.59231  3.13249  0.17939     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     16   3.42803  0.13081  3.47770  2.82530     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     17   3.42803  0.13081  3.47770  2.82530     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     18   3.08416  2.59231  3.13249  0.17939     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     19   2.94445  3.58328  0.11765  3.48749     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     20   2.94445  3.58328  0.11765  3.48749     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     21   2.94445  3.58328  0.11765  3.48749     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     22   0.14248  3.37586  2.79906  3.27710     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     23   2.94445  3.58328  0.11765  3.48749     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     24   3.08416  2.59231  3.13249  0.17939     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     25   0.14248  3.37586  2.79906  3.27710     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     26   3.08416  2.59231  3.13249  0.17939     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     27   2.94445  3.58328  0.11765  3.48749     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     28   3.08416  2.59231  3.13249  0.17939     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     29   3.08416  2.59231  3.13249  0.17939     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     30   3.08416  2.59231  3.13249  0.17939     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     31   2.94445  3.58328  0.11765  3.48749     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     32   3.08416  2.59231  3.13249  0.17939     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     33   0.14248  3.37586  2.79906  3.27710     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     34   3.08416  2.59231  3.13249  0.17939     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     35   3.42803  0.13081  3.47770  2.82530     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     36   0.14248  3.37586  2.79906  3.27710     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     37   2.94445  3.58328  0.11765  3.48749     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     38   3.08416  2.59231  3.13249  0.17939     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     39   2.94445  3.58328  0.11765  3.48749     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     40   3.08416  2.59231  3.13249  0.17939     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     41   3.42803  0.13081  3.47770  2.82530     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     42   3.42803  0.13081  3.47770  2.82530     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     43   2.94445  3.58328  0.11765  3.48749     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     44   3.08416  2.59231  3.13249  0.17939     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
     45   2.75674  3.49488  0.13627  3.39495     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01866  3.99064        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_twelve_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:03:56 2012
NSEQ  26
EFFN  3.322998
CKSUM 3952686333
STATS LOCAL MSV       -8.0163  0.71932
STATS LOCAL VITERBI   -7.8252  0.71932
STATS LOCAL FORWARD   -4.0212  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63370  1.38786  1.31856  1.24596
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  0.00000        *
      1   3.43323  0.13019  3.48268  2.82908      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
      2   0.14188  3.38036  2.80199  3.28204      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
      3   3.43323  0.13019  3.48268  2.82908      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
      4   3.08871  2.59521  3.13686  0.17866      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
      5   3.08871  2.59521  3.13686  0.17866      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
      6   3.43323  0.13019  3.48268  2.82908      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
      7   3.43323  0.13019  3.48268  2.82908      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
      8   2.94760  3.58786  0.11715  3.49254      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
      9   2.94760  3.58786  0.11715  3.49254      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     10   2.94760  3.58786  0.11715  3.49254     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     11   3.08871  2.59521  3.13686  0.17866     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     12   3.08871  2.59521  3.13686  0.17866     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     13   0.14188  3.38036  2.80199  3.28204     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     14   3.08871  2.59521  3.13686  0.17866     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     15   2.94760  3.58786  0.11715  3.49254     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     16   3.43323  0.13019  3.48268  2.82908     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     17   3.43323  0.13019  3.48268  2.82908     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     18   3.08871  2.59521  3.13686  0.17866     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     19   2.94760  3.58786  0.11715  3.49254     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     20   2.94760  3.58786  0.11715  3.49254     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     21   0.14188  3.38036  2.80199  3.28204     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     22   0.14188  3.38036  2.80199  3.28204     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     23   2.94760  3.58786  0.11715  3.49254     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     24   3.08871  2.59521  3.13686  0.17866     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     25   0.14188  3.38036  2.80199  3.28204     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     26   3.08871  2.59521  3.13686  0.17866     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     27   2.94760  3.58786  0.11715  3.49254     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     28   2.98523  0.25393  3.04770  2.06940     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     29   3.43323  0.13019  3.48268  2.82908     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     30   3.08871  2.59521  3.13686  0.17866     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     31   2.94760  3.58786  0.11715  3.49254     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     32   3.08871  2.59521  3.13686  0.17866     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     33   0.14188  3.38036  2.80199  3.28204     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     34   3.08871  2.59521  3.13686  0.17866     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     35   3.43323  0.13019  3.48268  2.82908     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     36   0.14188  3.38036  2.80199  3.28204     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     37   2.94760  3.58786  0.11715  3.49254     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     38   3.08871  2.59521  3.13686  0.17866     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     39   2.94760  3.58786  0.11715  3.49254     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     40   3.08871  2.59521  3.13686  0.17866     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     41   3.43323  0.13019  3.48268  2.82908     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     42   3.43323  0.13019  3.48268  2.82908     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     43   2.94760  3.58786  0.11715  3.49254     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     44   3.08871  2.59521  3.13686  0.17866     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
     45   0.14188  3.38036  2.80199  3.28204     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01861  3.99323        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_twenty_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:05:57 2012
NSEQ  11
EFFN  3.305908
CKSUM 4182302186
STATS LOCAL MSV       -8.0713  0.71931
STATS LOCAL VITERBI   -7.8599  0.71931
STATS LOCAL FORWARD   -4.0666  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.54970  1.52385  1.31655  1.19813
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  0.00000        *
      1   3.42690  0.13095  3.47662  2.82448      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
      2   0.14261  3.37488  2.79843  3.27603      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
      3   3.42690  0.13095  3.47662  2.82448      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
      4   3.08318  2.59169  3.13154  0.17955      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
      5   3.08318  2.59169  3.13154  0.17955      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
      6   3.08318  2.59169  3.13154  0.17955      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
      7   3.42690  0.13095  3.47662  2.82448      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
      8   2.94377  3.58229  0.11776  3.48639      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
      9   2.94377  3.58229  0.11776  3.48639      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     10   2.94377  3.58229  0.11776  3.48639     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     11   3.08318  2.59169  3.13154  0.17955     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     12   3.08318  2.59169  3.13154  0.17955     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     13   0.14261  3.37488  2.79843  3.27603     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     14   2.94377  3.58229  0.11776  3.48639     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     15   0.14261  3.37488  2.79843  3.27603     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     16   3.42690  0.13095  3.47662  2.82448     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     17   3.42690  0.13095  3.47662  2.82448     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     18   3.08318  2.59169  3.13154  0.17955     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     19   2.94377  3.58229  0.11776  3.48639     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     20   2.94377  3.58229  0.11776  3.48639     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     21   0.14261  3.37488  2.79843  3.27603     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     22   0.14261  3.37488  2.79843  3.27603     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     23   2.94377  3.58229  0.11776  3.48639     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     24   3.08318  2.59169  3.13154  0.17955     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     25   0.14261  3.37488  2.79843  3.27603     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     26   3.08318  2.59169  3.13154  0.17955     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     27   2.94377  3.58229  0.11776  3.48639     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     28   3.08318  2.59169  3.13154  0.17955     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     29   3.42690  0.13095  3.47662  2.82448     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     30   3.08318  2.59169  3.13154  0.17955     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     31   2.94377  3.58229  0.11776  3.48639     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     32   3.08318  2.59169  3.13154  0.17955     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     33   0.14261  3.37488  2.79843  3.27603     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     34   3.08318  2.59169  3.13154  0.17955     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     35   3.42690  0.13095  3.47662  2.82448     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     36   0.14261  3.37488  2.79843  3.27603     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     37   2.94377  3.58229  0.11776  3.48639     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     38   3.08318  2.59169  3.13154  0.17955     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     39   2.94377  3.58229  0.11776  3.48639     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     40   3.08318  2.59169  3.13154  0.17955     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     41   3.42690  0.13095  3.47662  2.82448     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     42   3.42690  0.13095  3.47662  2.82448     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     43   2.94377  3.58229  0.11776  3.48639     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     44   3.08318  2.59169  3.13154  0.17955     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     45   0.14261  3.37488  2.79843  3.27603     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01867  3.99008        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_twentyeight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:07:41 2012
NSEQ  14
EFFN  3.394043
CKSUM 293271894
STATS LOCAL MSV       -7.3677  0.71932
STATS LOCAL VITERBI   -7.7536  0.71932
STATS LOCAL FORWARD   -3.9629  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.69978  1.37432  1.28686  1.24435
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  0.00000        *
      1   3.45911  0.12715  3.50746  2.84789      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
      2   0.13895  3.40284  2.81657  3.30665      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
      3   3.45911  0.12715  3.50746  2.84789      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
      4   3.11146  2.60966  3.15874  0.17504      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
      5   3.11146  2.60966  3.15874  0.17504      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
      6   3.45911  0.12715  3.50746  2.84789      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
      7   3.45911  0.12715  3.50746  2.84789      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
      8   2.96321  3.61061  0.11469  3.51767      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.12979  4.02429  2.26489  1.46634  0.26236  1.09861  0.40547
      9   2.84680  3.44327  0.13428  3.33352      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03990  3.93440  3.93440  1.46634  0.26236  0.29587  1.36212
     10   2.96321  3.61061  0.11469  3.51767     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     11   3.11146  2.60966  3.15874  0.17504     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     12   3.11146  2.60966  3.15874  0.17504     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     13   0.13895  3.40284  2.81657  3.30665     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     14   2.96321  3.61061  0.11469  3.51767     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     15   3.11146  2.60966  3.15874  0.17504     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     16   3.45911  0.12715  3.50746  2.84789     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     17   3.45911  0.12715  3.50746  2.84789     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     18   3.11146  2.60966  3.15874  0.17504     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     19   2.96321  3.61061  0.11469  3.51767     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     20   2.96321  3.61061  0.11469  3.51767     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     21   1.27629  2.63263  0.56893  2.49000     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     22   0.13895  3.40284  2.81657  3.30665     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     23   2.96321  3.61061  0.11469  3.51767     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     24   3.11146  2.60966  3.15874  0.17504     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     25   0.13895  3.40284  2.81657  3.30665     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     26   3.11146  2.60966  3.15874  0.17504     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     27   2.96321  3.61061  0.11469  3.51767     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     28   3.45911  0.12715  3.50746  2.84789     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     29   3.45911  0.12715  3.50746  2.84789     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     30   3.11146  2.60966  3.15874  0.17504     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     31   2.96321  3.61061  0.11469  3.51767     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     32   3.11146  2.60966  3.15874  0.17504     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     33   0.13895  3.40284  2.81657  3.30665     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     34   3.11146  2.60966  3.15874  0.17504     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     35   3.45911  0.12715  3.50746  2.84789     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     36   0.13895  3.40284  2.81657  3.30665     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     37   2.96321  3.61061  0.11469  3.51767     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     38   3.11146  2.60966  3.15874  0.17504     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     39   2.96321  3.61061  0.11469  3.51767     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     40   3.11146  2.60966  3.15874  0.17504     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     41   3.45911  0.12715  3.50746  2.84789     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     42   3.45911  0.12715  3.50746  2.84789     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     43   2.96321  3.61061  0.11469  3.51767     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     44   3.11146  2.60966  3.15874  0.17504     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     45   0.13895  3.40284  2.81657  3.30665     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01837  4.00625        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_twentyfive_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:07:06 2012
NSEQ  75
EFFN  3.364563
CKSUM 324606330
STATS LOCAL MSV       -8.1203  0.71931
STATS LOCAL VITERBI   -7.8811  0.71931
STATS LOCAL FORWARD   -4.0462  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.55089  1.44302  1.39216  1.19340
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  0.00000        *
      1   3.44845  0.12839  3.49725  2.84015      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
      2   0.14015  3.39358  2.81057  3.29651      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
      3   3.44845  0.12839  3.49725  2.84015      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
      4   3.10207  2.60370  3.14971  0.17652      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
      5   3.10207  2.60370  3.14971  0.17652      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
      6   3.10207  2.60370  3.14971  0.17652      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
      7   3.44845  0.12839  3.49725  2.84015      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
      8   2.95679  3.60125  0.11569  3.50732      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
      9   2.95679  3.60125  0.11569  3.50732      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     10   2.95679  3.60125  0.11569  3.50732     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     11   3.10207  2.60370  3.14971  0.17652     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     12   3.10207  2.60370  3.14971  0.17652     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     13   0.14015  3.39358  2.81057  3.29651     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     14   3.10207  2.60370  3.14971  0.17652     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     15   2.66646  2.59325  0.22085  2.92086     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     16   3.44845  0.12839  3.49725  2.84015     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     17   3.44845  0.12839  3.49725  2.84015     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     18   3.10207  2.60370  3.14971  0.17652     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     19   2.95679  3.60125  0.11569  3.50732     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     20   2.95679  3.60125  0.11569  3.50732     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     21   0.14015  3.39358  2.81057  3.29651     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     22   0.14015  3.39358  2.81057  3.29651     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     23   2.95679  3.60125  0.11569  3.50732     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     24   3.10207  2.60370  3.14971  0.17652     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     25   0.14015  3.39358  2.81057  3.29651     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     26   3.10207  2.60370  3.14971  0.17652     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     27   2.95679  3.60125  0.11569  3.50732     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     28   3.44845  0.12839  3.49725  2.84015     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     29   3.44845  0.12839  3.49725  2.84015     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     30   3.10207  2.60370  3.14971  0.17652     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     31   2.95679  3.60125  0.11569  3.50732     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     32   3.10207  2.60370  3.14971  0.17652     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     33   0.14015  3.39358  2.81057  3.29651     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     34   3.10207  2.60370  3.14971  0.17652     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     35   3.44845  0.12839  3.49725  2.84015     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     36   0.14015  3.39358  2.81057  3.29651     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     37   2.95679  3.60125  0.11569  3.50732     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     38   3.10207  2.60370  3.14971  0.17652     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     39   2.95679  3.60125  0.11569  3.50732     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     40   3.10207  2.60370  3.14971  0.17652     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     41   3.44845  0.12839  3.49725  2.84015     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     42   3.44845  0.12839  3.49725  2.84015     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     43   0.14015  3.39358  2.81057  3.29651     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     44   3.10207  2.60370  3.14971  0.17652     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
     45   0.14015  3.39358  2.81057  3.29651     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01847  4.00087        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_twentyfour_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:06:56 2012
NSEQ  21
EFFN  3.299194
CKSUM 3016585621
STATS LOCAL MSV       -8.1081  0.71931
STATS LOCAL VITERBI   -7.7712  0.71931
STATS LOCAL FORWARD   -4.2342  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63365  1.44741  1.31884  1.19680
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  0.00000        *
      1   3.42441  0.13125  3.47423  2.82266      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
      2   0.14290  3.37271  2.79702  3.27366      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
      3   3.42441  0.13125  3.47423  2.82266      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
      4   3.08100  2.59030  3.12944  0.17991      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
      5   3.08100  2.59030  3.12944  0.17991      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
      6   3.08100  2.59030  3.12944  0.17991      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
      7   3.42441  0.13125  3.47423  2.82266      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
      8   2.94226  3.58009  0.11800  3.48397      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
      9   2.94226  3.58009  0.11800  3.48397      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     10   2.94226  3.58009  0.11800  3.48397     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     11   3.08100  2.59030  3.12944  0.17991     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     12   3.08100  2.59030  3.12944  0.17991     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     13   0.14290  3.37271  2.79702  3.27366     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     14   3.42441  0.13125  3.47423  2.82266     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     15   2.94226  3.58009  0.11800  3.48397     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     16   3.42441  0.13125  3.47423  2.82266     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     17   3.42441  0.13125  3.47423  2.82266     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     18   3.08100  2.59030  3.12944  0.17991     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     19   2.94226  3.58009  0.11800  3.48397     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     20   2.94226  3.58009  0.11800  3.48397     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     21   0.14290  3.37271  2.79702  3.27366     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     22   0.14290  3.37271  2.79702  3.27366     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     23   2.94226  3.58009  0.11800  3.48397     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     24   3.08100  2.59030  3.12944  0.17991     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     25   0.14290  3.37271  2.79702  3.27366     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     26   3.08100  2.59030  3.12944  0.17991     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     27   2.94226  3.58009  0.11800  3.48397     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     28   3.08100  2.59030  3.12944  0.17991     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     29   3.42441  0.13125  3.47423  2.82266     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     30   3.08100  2.59030  3.12944  0.17991     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     31   2.94226  3.58009  0.11800  3.48397     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     32   3.08100  2.59030  3.12944  0.17991     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     33   0.14290  3.37271  2.79702  3.27366     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     34   3.08100  2.59030  3.12944  0.17991     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     35   3.42441  0.13125  3.47423  2.82266     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     36   0.14290  3.37271  2.79702  3.27366     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     37   2.94226  3.58009  0.11800  3.48397     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     38   3.08100  2.59030  3.12944  0.17991     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     39   2.94226  3.58009  0.11800  3.48397     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     40   3.08100  2.59030  3.12944  0.17991     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     41   3.42441  0.13125  3.47423  2.82266     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     42   3.42441  0.13125  3.47423  2.82266     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     43   2.94226  3.58009  0.11800  3.48397     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     44   3.08100  2.59030  3.12944  0.17991     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
     45   0.14290  3.37271  2.79702  3.27366     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01869  3.98883        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_twentynine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:07:52 2012
NSEQ  4
EFFN  3.253906
CKSUM 2374311045
STATS LOCAL MSV       -8.1024  0.71931
STATS LOCAL VITERBI   -7.7728  0.71931
STATS LOCAL FORWARD   -4.2920  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63428  1.31762  1.32060  1.30874
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  0.00000        *
      1   0.14487  3.35799  2.78743  3.25755      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
      2   3.40742  0.13331  3.45796  2.81026      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
      3   3.06618  2.58087  3.11519  0.18233      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
      4   3.40742  0.13331  3.45796  2.81026      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
      5   3.40742  0.13331  3.45796  2.81026      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
      6   3.06618  2.58087  3.11519  0.18233      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
      7   2.93193  3.56511  0.11967  3.46744      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
      8   2.93193  3.56511  0.11967  3.46744      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
      9   2.93193  3.56511  0.11967  3.46744      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     10   3.06618  2.58087  3.11519  0.18233     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     11   3.06618  2.58087  3.11519  0.18233     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     12   3.40742  0.13331  3.45796  2.81026     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     13   0.14487  3.35799  2.78743  3.25755     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     14   2.93193  3.56511  0.11967  3.46744     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     15   3.40742  0.13331  3.45796  2.81026     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     16   3.40742  0.13331  3.45796  2.81026     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     17   3.06618  2.58087  3.11519  0.18233     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     18   3.40742  0.13331  3.45796  2.81026     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     19   0.14487  3.35799  2.78743  3.25755     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     20   2.93193  3.56511  0.11967  3.46744     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     21   2.93193  3.56511  0.11967  3.46744     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     22   0.14487  3.35799  2.78743  3.25755     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     23   2.93193  3.56511  0.11967  3.46744     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     24   3.06618  2.58087  3.11519  0.18233     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     25   0.14487  3.35799  2.78743  3.25755     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     26   3.06618  2.58087  3.11519  0.18233     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     27   2.93193  3.56511  0.11967  3.46744     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     28   3.40742  0.13331  3.45796  2.81026     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     29   3.40742  0.13331  3.45796  2.81026     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     30   3.06618  2.58087  3.11519  0.18233     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     31   2.93193  3.56511  0.11967  3.46744     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     32   3.06618  2.58087  3.11519  0.18233     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     33   0.14487  3.35799  2.78743  3.25755     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     34   3.06618  2.58087  3.11519  0.18233     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     35   3.40742  0.13331  3.45796  2.81026     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     36   0.14487  3.35799  2.78743  3.25755     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     37   2.93193  3.56511  0.11967  3.46744     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     38   3.06618  2.58087  3.11519  0.18233     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     39   2.93193  3.56511  0.11967  3.46744     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     40   3.06618  2.58087  3.11519  0.18233     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     41   3.40742  0.13331  3.45796  2.81026     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     42   3.40742  0.13331  3.45796  2.81026     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     43   2.93193  3.56511  0.11967  3.46744     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     44   3.06618  2.58087  3.11519  0.18233     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     45   0.14487  3.35799  2.78743  3.25755     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01885  3.98041        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_twentyone_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:06:07 2012
NSEQ  7
EFFN  3.298340
CKSUM 246655704
STATS LOCAL MSV       -8.1183  0.71932
STATS LOCAL VITERBI   -7.9257  0.71932
STATS LOCAL FORWARD   -4.0205  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63363  1.44741  1.31884  1.19681
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  0.00000        *
      1   3.42409  0.13129  3.47393  2.82243      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
      2   0.14293  3.37244  2.79684  3.27336      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
      3   3.42409  0.13129  3.47393  2.82243      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
      4   3.08072  2.59012  3.12917  0.17995      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
      5   3.08072  2.59012  3.12917  0.17995      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
      6   3.08072  2.59012  3.12917  0.17995      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
      7   3.42409  0.13129  3.47393  2.82243      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
      8   2.94206  3.57981  0.11803  3.48366      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
      9   2.94206  3.57981  0.11803  3.48366      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     10   2.94206  3.57981  0.11803  3.48366     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     11   3.08072  2.59012  3.12917  0.17995     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     12   3.08072  2.59012  3.12917  0.17995     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     13   0.14293  3.37244  2.79684  3.27336     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     14   3.08072  2.59012  3.12917  0.17995     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     15   2.94206  3.57981  0.11803  3.48366     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     16   3.42409  0.13129  3.47393  2.82243     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     17   3.42409  0.13129  3.47393  2.82243     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     18   3.08072  2.59012  3.12917  0.17995     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     19   2.94206  3.57981  0.11803  3.48366     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     20   2.94206  3.57981  0.11803  3.48366     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     21   0.14293  3.37244  2.79684  3.27336     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     22   0.14293  3.37244  2.79684  3.27336     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     23   2.94206  3.57981  0.11803  3.48366     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     24   3.08072  2.59012  3.12917  0.17995     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     25   0.14293  3.37244  2.79684  3.27336     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     26   3.08072  2.59012  3.12917  0.17995     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     27   2.94206  3.57981  0.11803  3.48366     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     28   3.42409  0.13129  3.47393  2.82243     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     29   3.42409  0.13129  3.47393  2.82243     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     30   3.08072  2.59012  3.12917  0.17995     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     31   2.94206  3.57981  0.11803  3.48366     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     32   3.08072  2.59012  3.12917  0.17995     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     33   0.14293  3.37244  2.79684  3.27336     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     34   3.08072  2.59012  3.12917  0.17995     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     35   3.42409  0.13129  3.47393  2.82243     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     36   0.14293  3.37244  2.79684  3.27336     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     37   2.94206  3.57981  0.11803  3.48366     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     38   3.08072  2.59012  3.12917  0.17995     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     39   2.94206  3.57981  0.11803  3.48366     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     40   3.08072  2.59012  3.12917  0.17995     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     41   3.42409  0.13129  3.47393  2.82243     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     42   3.42409  0.13129  3.47393  2.82243     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     43   2.94206  3.57981  0.11803  3.48366     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     44   3.08072  2.59012  3.12917  0.17995     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
     45   0.14293  3.37244  2.79684  3.27336     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01870  3.98868        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_twentyseven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:07:27 2012
NSEQ  90
EFFN  3.331604
CKSUM 115872449
STATS LOCAL MSV       -8.0842  0.71933
STATS LOCAL VITERBI   -7.7337  0.71933
STATS LOCAL FORWARD   -3.8434  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.55075  1.51971  1.38361  1.14425
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  0.00000        *
      1   3.43640  0.12982  3.48571  2.83139      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
      2   0.14152  3.38312  2.80378  3.28505      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
      3   3.43640  0.12982  3.48571  2.83139      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
      4   3.09149  2.59697  3.13953  0.17821      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
      5   3.09149  2.59697  3.13953  0.17821      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
      6   3.09149  2.59697  3.13953  0.17821      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
      7   3.43640  0.12982  3.48571  2.83139      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
      8   2.94952  3.59065  0.11684  3.49562      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
      9   2.94952  3.59065  0.11684  3.49562      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     10   2.94952  3.59065  0.11684  3.49562     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     11   0.14152  3.38312  2.80378  3.28505     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     12   3.09149  2.59697  3.13953  0.17821     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     13   0.14152  3.38312  2.80378  3.28505     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     14   3.09149  2.59697  3.13953  0.17821     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     15   3.09149  2.59697  3.13953  0.17821     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     16   3.43640  0.12982  3.48571  2.83139     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     17   3.43640  0.12982  3.48571  2.83139     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     18   3.09149  2.59697  3.13953  0.17821     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     19   2.94952  3.59065  0.11684  3.49562     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     20   2.94952  3.59065  0.11684  3.49562     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     21   0.14152  3.38312  2.80378  3.28505     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     22   0.14152  3.38312  2.80378  3.28505     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     23   2.94952  3.59065  0.11684  3.49562     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     24   3.09149  2.59697  3.13953  0.17821     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     25   0.14152  3.38312  2.80378  3.28505     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     26   3.09149  2.59697  3.13953  0.17821     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     27   2.94952  3.59065  0.11684  3.49562     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     28   3.43640  0.12982  3.48571  2.83139     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     29   3.09149  2.59697  3.13953  0.17821     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     30   3.09149  2.59697  3.13953  0.17821     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     31   2.94952  3.59065  0.11684  3.49562     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     32   3.09149  2.59697  3.13953  0.17821     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     33   0.14152  3.38312  2.80378  3.28505     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     34   3.09149  2.59697  3.13953  0.17821     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     35   3.43640  0.12982  3.48571  2.83139     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     36   0.14152  3.38312  2.80378  3.28505     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     37   2.94952  3.59065  0.11684  3.49562     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     38   3.09149  2.59697  3.13953  0.17821     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     39   2.94952  3.59065  0.11684  3.49562     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     40   3.09149  2.59697  3.13953  0.17821     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     41   3.43640  0.12982  3.48571  2.83139     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     42   3.43640  0.12982  3.48571  2.83139     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     43   2.94952  3.59065  0.11684  3.49562     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     44   3.09149  2.59697  3.13953  0.17821     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     45   0.14152  3.38312  2.80378  3.28505     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01858  3.99482        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_twentysix_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:07:17 2012
NSEQ  13
EFFN  3.418213
CKSUM 2570419389
STATS LOCAL MSV       -7.4116  0.71933
STATS LOCAL VITERBI   -7.6858  0.71933
STATS LOCAL FORWARD   -3.9853  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.71992  1.35545  1.29332  1.24226
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  0.00000        *
      1   3.46776  0.12615  3.51574  2.85416      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
      2   0.13798  3.41037  2.82144  3.31490      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
      3   3.46776  0.12615  3.51574  2.85416      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
      4   3.11910  2.61452  3.16608  0.17384      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
      5   3.11910  2.61452  3.16608  0.17384      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
      6   3.46776  0.12615  3.51574  2.85416      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
      7   3.46776  0.12615  3.51574  2.85416      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
      8   2.96841  3.61821  0.11388  3.52606      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
      9   2.96841  3.61821  0.11388  3.52606      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     10   2.96841  3.61821  0.11388  3.52606     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     11   3.11910  2.61452  3.16608  0.17384     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     12   3.11910  2.61452  3.16608  0.17384     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     13   0.13798  3.41037  2.82144  3.31490     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     14   3.11910  2.61452  3.16608  0.17384     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     15   2.07897  1.10844  0.88982  2.00889     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     16   3.46776  0.12615  3.51574  2.85416     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     17   3.46776  0.12615  3.51574  2.85416     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     18   3.11910  2.61452  3.16608  0.17384     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     19   2.96841  3.61821  0.11388  3.52606     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     20   2.96841  3.61821  0.11388  3.52606     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     21   2.96841  3.61821  0.11388  3.52606     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     22   0.13798  3.41037  2.82144  3.31490     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     23   2.96841  3.61821  0.11388  3.52606     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     24   3.11910  2.61452  3.16608  0.17384     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     25   0.13798  3.41037  2.82144  3.31490     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     26   3.11910  2.61452  3.16608  0.17384     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     27   2.96841  3.61821  0.11388  3.52606     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     28   3.46776  0.12615  3.51574  2.85416     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     29   3.46776  0.12615  3.51574  2.85416     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     30   3.11910  2.61452  3.16608  0.17384     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     31   2.96841  3.61821  0.11388  3.52606     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     32   3.11910  2.61452  3.16608  0.17384     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     33   0.13798  3.41037  2.82144  3.31490     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     34   3.11910  2.61452  3.16608  0.17384     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     35   3.46776  0.12615  3.51574  2.85416     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     36   0.13798  3.41037  2.82144  3.31490     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     37   2.96841  3.61821  0.11388  3.52606     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     38   3.11910  2.61452  3.16608  0.17384     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     39   2.96841  3.61821  0.11388  3.52606     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     40   3.11910  2.61452  3.16608  0.17384     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     41   3.46776  0.12615  3.51574  2.85416     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     42   3.46776  0.12615  3.51574  2.85416     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     43   2.96841  3.61821  0.11388  3.52606     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     44   3.11910  2.61452  3.16608  0.17384     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
     45   0.13798  3.41037  2.82144  3.31490     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01829  4.01064        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_twentythreea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:06:37 2012
NSEQ  2
EFFN  2.000000
CKSUM 3990132220
STATS LOCAL MSV       -7.2795  0.72829
STATS LOCAL VITERBI   -8.2147  0.72829
STATS LOCAL FORWARD   -3.3678  0.72829
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.52092  1.38736  1.37824  1.27392
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.53331  3.02441  0.20344  2.88069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_twentythreeb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:06:43 2012
NSEQ  2
EFFN  2.000000
CKSUM 1038123167
STATS LOCAL MSV       -7.5283  0.72812
STATS LOCAL VITERBI   -8.2416  0.72812
STATS LOCAL FORWARD   -3.4773  0.72812
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.66011  1.38886  1.26865  1.27544
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.53331  3.02441  0.20344  2.88069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_twentytwo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:06:18 2012
NSEQ  26
EFFN  3.246826
CKSUM 2755268631
STATS LOCAL MSV       -8.1324  0.71931
STATS LOCAL VITERBI   -7.6607  0.71931
STATS LOCAL FORWARD   -4.1374  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63309  1.38346  1.25712  1.31121
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  0.00000        *
      1   3.40474  0.13364  3.45540  2.80830      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
      2   0.14519  3.35567  2.78592  3.25501      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
      3   3.40474  0.13364  3.45540  2.80830      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
      4   3.06385  2.57938  3.11295  0.18272      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
      5   3.06385  2.57938  3.11295  0.18272      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
      6   3.40474  0.13364  3.45540  2.80830      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
      7   3.40474  0.13364  3.45540  2.80830      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
      8   2.93029  3.56274  0.11993  3.46483      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
      9   2.93029  3.56274  0.11993  3.46483      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     10   2.93029  3.56274  0.11993  3.46483     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     11   3.06385  2.57938  3.11295  0.18272     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     12   3.06385  2.57938  3.11295  0.18272     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     13   0.14519  3.35567  2.78592  3.25501     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     14   0.14519  3.35567  2.78592  3.25501     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     15   2.93029  3.56274  0.11993  3.46483     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     16   3.40474  0.13364  3.45540  2.80830     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     17   3.40474  0.13364  3.45540  2.80830     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     18   3.06385  2.57938  3.11295  0.18272     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     19   2.93029  3.56274  0.11993  3.46483     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     20   2.93029  3.56274  0.11993  3.46483     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     21   2.93029  3.56274  0.11993  3.46483     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     22   0.14519  3.35567  2.78592  3.25501     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     23   2.93029  3.56274  0.11993  3.46483     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     24   3.06385  2.57938  3.11295  0.18272     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     25   0.14519  3.35567  2.78592  3.25501     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     26   3.06385  2.57938  3.11295  0.18272     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     27   2.93029  3.56274  0.11993  3.46483     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     28   3.40474  0.13364  3.45540  2.80830     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     29   3.40474  0.13364  3.45540  2.80830     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     30   3.06385  2.57938  3.11295  0.18272     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     31   2.93029  3.56274  0.11993  3.46483     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     32   3.06385  2.57938  3.11295  0.18272     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     33   0.14519  3.35567  2.78592  3.25501     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     34   3.06385  2.57938  3.11295  0.18272     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     35   3.40474  0.13364  3.45540  2.80830     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     36   0.14519  3.35567  2.78592  3.25501     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     37   2.93029  3.56274  0.11993  3.46483     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     38   3.06385  2.57938  3.11295  0.18272     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     39   2.93029  3.56274  0.11993  3.46483     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     40   3.06385  2.57938  3.11295  0.18272     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     41   3.40474  0.13364  3.45540  2.80830     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     42   3.40474  0.13364  3.45540  2.80830     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     43   2.93029  3.56274  0.11993  3.46483     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     44   3.06385  2.57938  3.11295  0.18272     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     45   0.14519  3.35567  2.78592  3.25501     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01888  3.97909        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Oomycota_58S_end_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Jan 23 23:01:59 2012
NSEQ  57
EFFN  3.336365
CKSUM 3639722455
STATS LOCAL MSV       -8.0140  0.71933
STATS LOCAL VITERBI   -7.9301  0.71933
STATS LOCAL FORWARD   -3.8991  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72359  1.51656  1.31924  1.09431
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  0.00000        *
      1   3.43814  0.12961  3.48739  2.83266      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
      2   0.14132  3.38463  2.80476  3.28671      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
      3   3.43814  0.12961  3.48739  2.83266      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
      4   3.09302  2.59795  3.14101  0.17797      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
      5   3.09302  2.59795  3.14101  0.17797      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
      6   3.09302  2.59795  3.14101  0.17797      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
      7   3.43814  0.12961  3.48739  2.83266      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
      8   2.95057  3.59219  0.11668  3.49732      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
      9   2.95057  3.59219  0.11668  3.49732      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     10   2.95057  3.59219  0.11668  3.49732     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     11   3.09302  2.59795  3.14101  0.17797     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     12   3.09302  2.59795  3.14101  0.17797     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     13   0.14132  3.38463  2.80476  3.28671     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     14   2.95057  3.59219  0.11668  3.49732     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     15   3.09302  2.59795  3.14101  0.17797     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     16   3.43814  0.12961  3.48739  2.83266     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     17   3.43814  0.12961  3.48739  2.83266     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     18   3.09302  2.59795  3.14101  0.17797     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     19   2.95057  3.59219  0.11668  3.49732     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     20   2.95057  3.59219  0.11668  3.49732     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     21   0.14132  3.38463  2.80476  3.28671     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     22   0.14132  3.38463  2.80476  3.28671     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     23   2.95057  3.59219  0.11668  3.49732     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     24   3.09302  2.59795  3.14101  0.17797     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     25   0.14132  3.38463  2.80476  3.28671     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     26   3.09302  2.59795  3.14101  0.17797     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     27   2.95057  3.59219  0.11668  3.49732     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     28   3.09302  2.59795  3.14101  0.17797     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     29   3.43814  0.12961  3.48739  2.83266     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     30   3.09302  2.59795  3.14101  0.17797     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     31   2.95057  3.59219  0.11668  3.49732     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     32   3.09302  2.59795  3.14101  0.17797     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     33   0.14132  3.38463  2.80476  3.28671     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     34   3.09302  2.59795  3.14101  0.17797     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     35   3.43814  0.12961  3.48739  2.83266     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     36   0.14132  3.38463  2.80476  3.28671     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     37   2.95057  3.59219  0.11668  3.49732     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     38   3.09302  2.59795  3.14101  0.17797     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     39   2.95057  3.59219  0.11668  3.49732     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     40   3.09302  2.59795  3.14101  0.17797     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     41   3.43814  0.12961  3.48739  2.83266     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     42   3.43814  0.12961  3.48739  2.83266     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     43   2.95057  3.59219  0.11668  3.49732     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     44   3.09302  2.59795  3.14101  0.17797     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
     45   3.09302  2.59795  3.14101  0.17797     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01857  3.99570        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Oomycota_58S_start_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan 21 16:23:27 2012
NSEQ  5114
EFFN  3.418840
CKSUM 239509203
STATS LOCAL MSV       -7.6678  0.71932
STATS LOCAL VITERBI   -7.5309  0.71932
STATS LOCAL FORWARD   -4.1743  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27860  1.38869  1.38454  1.50628
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  0.00000        *
      1   3.07999  0.15785  3.32136  2.74956      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
      2   0.13796  3.41057  2.82158  3.31513      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
      3   0.13796  3.41057  2.82158  3.31513      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
      4   3.46800  0.12612  3.51597  2.85433      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
      5   3.11931  2.61465  3.16629  0.17381      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
      6   3.11931  2.61465  3.16629  0.17381      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
      7   3.11931  2.61465  3.16629  0.17381      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
      8   3.46800  0.12612  3.51597  2.85433      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
      9   0.13796  3.41057  2.82158  3.31513      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     10   2.30238  3.12456  0.21093  3.07504     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     11   3.46800  0.12612  3.51597  2.85433     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     12   0.14638  3.37765  2.74188  3.28091     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03634  4.02872  4.02329  1.46634  0.26236  1.09861  0.40547
     13   2.96844  3.61825  0.11388  3.52611     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02862  4.02862  1.46634  0.26236  1.09500  0.40728
     14   3.11931  2.61465  3.16629  0.17381     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     15   2.96856  3.61842  0.11386  3.52630     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     16   2.96856  3.61842  0.11386  3.52630     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     17   0.13796  3.41057  2.82158  3.31513     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     18   3.11931  2.61465  3.16629  0.17381     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     19   2.96856  3.61842  0.11386  3.52630     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03634  4.02872  4.02329  1.46634  0.26236  1.09861  0.40547
     20   3.11914  2.61454  3.16612  0.17383     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02862  4.02862  1.46634  0.26236  1.09500  0.40728
     21   3.37401  0.13987  3.32703  2.80717     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     22   3.11931  2.61465  3.16629  0.17381     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     23   0.16908  3.10776  2.74696  3.06335     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     24   2.96856  3.61842  0.11386  3.52630     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     25   2.96856  3.61842  0.11386  3.52630     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03644  4.02872  4.01789  1.46634  0.26236  1.09861  0.40547
     26   3.46762  0.12617  3.51560  2.85405     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02852  4.02852  1.46634  0.26236  1.09141  0.40909
     27   3.11931  2.61465  3.16629  0.17381     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     28   3.46800  0.12612  3.51597  2.85433     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     29   2.90845  3.33547  0.13232  3.38795     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     30   3.46800  0.12612  3.51597  2.85433     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     31   0.18894  3.05008  2.65115  2.91442     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     32   3.46800  0.12612  3.51597  2.85433     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     33   0.15609  3.17750  2.77808  3.20235     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     34   3.00786  2.34737  3.05892  0.21314     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     35   3.27541  0.14023  3.42390  2.80591     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     36   2.96856  3.61842  0.11386  3.52630     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     37   0.13796  3.41057  2.82158  3.31513     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     38   3.11931  2.61465  3.16629  0.17381     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03655  4.02872  4.01245  1.46634  0.26236  1.09861  0.40547
     39   2.85717  3.56849  0.12400  3.47405     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02843  4.02843  1.46634  0.26236  1.08780  0.41092
     40   0.15390  3.34924  2.67664  3.25104     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     41   0.13796  3.41057  2.82158  3.31513     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02872  4.01774  1.46634  0.26236  1.09861  0.40547
     42   2.82175  3.55190  0.12751  3.45653     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02852  4.02852  1.46634  0.26236  1.09131  0.40914
     43   0.15287  3.35306  2.68523  3.25507     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     44   0.17216  3.12078  2.64919  3.13894     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
     45   3.46800  0.12612  3.51597  2.85433     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01829  4.01076        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Oomycota_4_LSU_start_eight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:03:30 2012
NSEQ  3
EFFN  3.000000
CKSUM 243398462
STATS LOCAL MSV       -7.8088  0.72045
STATS LOCAL VITERBI   -7.7580  0.72045
STATS LOCAL FORWARD   -4.0808  0.72045
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.11500  1.46208  1.59571  1.43731
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.97980  2.52563  3.03204  0.19727     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Oomycota_4_LSU_start_eleven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:03:58 2012
NSEQ  18
EFFN  3.247559
CKSUM 2515016115
STATS LOCAL MSV       -7.9395  0.71933
STATS LOCAL VITERBI   -7.5658  0.71933
STATS LOCAL FORWARD   -4.1596  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.10884  1.46713  1.51997  1.51071
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  0.00000        *
      1   0.14515  3.35591  2.78608  3.25528      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
      2   0.14515  3.35591  2.78608  3.25528      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
      3   3.06409  2.57953  3.11318  0.18268      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
      4   2.93046  3.56298  0.11991  3.46510      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
      5   2.93046  3.56298  0.11991  3.46510      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
      6   0.14515  3.35591  2.78608  3.25528      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
      7   3.40502  0.13361  3.45566  2.80851      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
      8   3.40502  0.13361  3.45566  2.80851      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
      9   3.06409  2.57953  3.11318  0.18268      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     10   2.93046  3.56298  0.11991  3.46510     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     11   0.14515  3.35591  2.78608  3.25528     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     12   3.06409  2.57953  3.11318  0.18268     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     13   0.14515  3.35591  2.78608  3.25528     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     14   3.06409  2.57953  3.11318  0.18268     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     15   3.40502  0.13361  3.45566  2.80851     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     16   0.14515  3.35591  2.78608  3.25528     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     17   2.93046  3.56298  0.11991  3.46510     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     18   2.93046  3.56298  0.11991  3.46510     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     19   3.40502  0.13361  3.45566  2.80851     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     20   0.14515  3.35591  2.78608  3.25528     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     21   0.14515  3.35591  2.78608  3.25528     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     22   2.93046  3.56298  0.11991  3.46510     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     23   0.14515  3.35591  2.78608  3.25528     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     24   3.06409  2.57953  3.11318  0.18268     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     25   3.06409  2.57953  3.11318  0.18268     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     26   0.14515  3.35591  2.78608  3.25528     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     27   3.40502  0.13361  3.45566  2.80851     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     28   3.40502  0.13361  3.45566  2.80851     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     29   3.40502  0.13361  3.45566  2.80851     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     30   2.93046  3.56298  0.11991  3.46510     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     31   3.40502  0.13361  3.45566  2.80851     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     32   3.06409  2.57953  3.11318  0.18268     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     33   2.93046  3.56298  0.11991  3.46510     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     34   0.14515  3.35591  2.78608  3.25528     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     35   0.14515  3.35591  2.78608  3.25528     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     36   3.40502  0.13361  3.45566  2.80851     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     37   3.06409  2.57953  3.11318  0.18268     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     38   3.06409  2.57953  3.11318  0.18268     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     39   0.14515  3.35591  2.78608  3.25528     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     40   0.14515  3.35591  2.78608  3.25528     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     41   2.93046  3.56298  0.11991  3.46510     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     42   3.40502  0.13361  3.45566  2.80851     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     43   0.14515  3.35591  2.78608  3.25528     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     44   3.06409  2.57953  3.11318  0.18268     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     45   0.14515  3.35591  2.78608  3.25528     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01888  3.97923        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Oomycota_4_LSU_start_fifteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:04:46 2012
NSEQ  25
EFFN  3.445435
CKSUM 249567624
STATS LOCAL MSV       -7.6351  0.71932
STATS LOCAL VITERBI   -7.6909  0.71932
STATS LOCAL FORWARD   -4.1126  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.14410  1.39240  1.64908  1.42385
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  0.00000        *
      1   3.12765  2.61995  3.17430  0.17251      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
      2   3.12765  2.61995  3.17430  0.17251      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
      3   3.12765  2.61995  3.17430  0.17251      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
      4   2.97420  3.62668  0.11299  3.53543      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
      5   2.97420  3.62668  0.11299  3.53543      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
      6   0.13691  3.41877  2.82688  3.32411      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
      7   3.47743  0.12504  3.52498  2.86115      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
      8   3.47743  0.12504  3.52498  2.86115      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
      9   3.12765  2.61995  3.17430  0.17251      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     10   2.97420  3.62668  0.11299  3.53543     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     11   0.13691  3.41877  2.82688  3.32411     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     12   3.12765  2.61995  3.17430  0.17251     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     13   0.13691  3.41877  2.82688  3.32411     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     14   3.12765  2.61995  3.17430  0.17251     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     15   3.47743  0.12504  3.52498  2.86115     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     16   0.13691  3.41877  2.82688  3.32411     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     17   1.11991  2.58251  0.67175  2.43851     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     18   0.13691  3.41877  2.82688  3.32411     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     19   3.47743  0.12504  3.52498  2.86115     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     20   0.13691  3.41877  2.82688  3.32411     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     21   0.13691  3.41877  2.82688  3.32411     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     22   2.97420  3.62668  0.11299  3.53543     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     23   0.13691  3.41877  2.82688  3.32411     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     24   3.14012  0.20787  3.19834  2.26738     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     25   3.12765  2.61995  3.17430  0.17251     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     26   0.13691  3.41877  2.82688  3.32411     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     27   3.47743  0.12504  3.52498  2.86115     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     28   3.47743  0.12504  3.52498  2.86115     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     29   3.47743  0.12504  3.52498  2.86115     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     30   2.97420  3.62668  0.11299  3.53543     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     31   3.47743  0.12504  3.52498  2.86115     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     32   3.12765  2.61995  3.17430  0.17251     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     33   2.97420  3.62668  0.11299  3.53543     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     34   0.13691  3.41877  2.82688  3.32411     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     35   0.13691  3.41877  2.82688  3.32411     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     36   3.47743  0.12504  3.52498  2.86115     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     37   3.12765  2.61995  3.17430  0.17251     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     38   3.12765  2.61995  3.17430  0.17251     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     39   0.13691  3.41877  2.82688  3.32411     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     40   0.13691  3.41877  2.82688  3.32411     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     41   2.97420  3.62668  0.11299  3.53543     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     42   3.47743  0.12504  3.52498  2.86115     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     43   3.12765  2.61995  3.17430  0.17251     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     44   0.13691  3.41877  2.82688  3.32411     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
     45   0.13691  3.41877  2.82688  3.32411     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01820  4.01556        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Oomycota_4_LSU_start_five_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:03:08 2012
NSEQ  195
EFFN  3.406906
CKSUM 2842362898
STATS LOCAL MSV       -7.4635  0.71931
STATS LOCAL VITERBI   -7.6657  0.71931
STATS LOCAL FORWARD   -4.1200  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.15800  1.44691  1.51902  1.46247
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  0.00000        *
      1   0.15762  3.33365  2.64821  3.23445      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
      2   3.06219  2.47949  3.11116  0.19252      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
      3   3.11553  2.61225  3.16265  0.17440      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
      4   2.96599  3.61467  0.11426  3.52215      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
      5   2.96599  3.61467  0.11426  3.52215      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
      6   0.13843  3.40685  2.81917  3.31105      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
      7   3.46372  0.12661  3.51187  2.85123      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
      8   3.46372  0.12661  3.51187  2.85123      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
      9   3.11553  2.61225  3.16265  0.17440      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     10   2.96599  3.61467  0.11426  3.52215     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     11   0.13843  3.40685  2.81917  3.31105     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     12   3.11553  2.61225  3.16265  0.17440     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     13   0.13843  3.40685  2.81917  3.31105     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     14   3.11553  2.61225  3.16265  0.17440     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     15   3.46372  0.12661  3.51187  2.85123     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     16   0.13843  3.40685  2.81917  3.31105     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     17   2.96599  3.61467  0.11426  3.52215     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     18   2.96599  3.61467  0.11426  3.52215     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     19   3.34656  0.15194  3.39831  2.62661     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     20   0.13843  3.40685  2.81917  3.31105     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     21   0.13843  3.40685  2.81917  3.31105     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     22   2.96599  3.61467  0.11426  3.52215     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     23   0.13843  3.40685  2.81917  3.31105     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     24   2.47249  1.22404  2.54227  0.61083     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     25   3.11553  2.61225  3.16265  0.17440     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     26   0.13843  3.40685  2.81917  3.31105     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     27   3.46372  0.12661  3.51187  2.85123     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     28   3.46372  0.12661  3.51187  2.85123     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     29   3.46372  0.12661  3.51187  2.85123     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     30   2.96599  3.61467  0.11426  3.52215     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     31   3.46372  0.12661  3.51187  2.85123     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     32   3.11553  2.61225  3.16265  0.17440     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     33   2.96599  3.61467  0.11426  3.52215     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     34   0.13843  3.40685  2.81917  3.31105     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     35   0.13843  3.40685  2.81917  3.31105     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     36   3.36436  0.14788  3.41555  2.65887     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     37   3.11553  2.61225  3.16265  0.17440     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     38   3.11553  2.61225  3.16265  0.17440     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     39   0.13843  3.40685  2.81917  3.31105     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     40   0.13843  3.40685  2.81917  3.31105     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     41   2.96599  3.61467  0.11426  3.52215     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     42   3.46372  0.12661  3.51187  2.85123     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     43   0.13843  3.40685  2.81917  3.31105     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     44   3.11553  2.61225  3.16265  0.17440     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
     45   0.13843  3.40685  2.81917  3.31105     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01833  4.00859        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Oomycota_4_LSU_start_four_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:02:57 2012
NSEQ  31
EFFN  3.424683
CKSUM 287374859
STATS LOCAL MSV       -7.5220  0.71933
STATS LOCAL VITERBI   -7.5970  0.71933
STATS LOCAL FORWARD   -4.1177  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.12153  1.40210  1.60169  1.48464
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  0.00000        *
      1   0.44098  2.50108  2.35237  1.71785      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
      2   3.12114  2.61581  3.16804  0.17352      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
      3   3.12114  2.61581  3.16804  0.17352      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
      4   2.96979  3.62023  0.11367  3.52830      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
      5   2.96979  3.62023  0.11367  3.52830      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
      6   0.13773  3.41237  2.82274  3.31709      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
      7   3.47007  0.12588  3.51795  2.85583      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
      8   3.47007  0.12588  3.51795  2.85583      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
      9   3.12114  2.61581  3.16804  0.17352      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     10   2.96979  3.62023  0.11367  3.52830     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     11   0.13773  3.41237  2.82274  3.31709     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     12   3.12114  2.61581  3.16804  0.17352     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     13   0.13773  3.41237  2.82274  3.31709     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     14   3.12114  2.61581  3.16804  0.17352     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     15   3.47007  0.12588  3.51795  2.85583     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     16   0.13773  3.41237  2.82274  3.31709     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     17   2.96979  3.62023  0.11367  3.52830     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     18   0.13773  3.41237  2.82274  3.31709     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     19   3.47007  0.12588  3.51795  2.85583     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     20   0.13773  3.41237  2.82274  3.31709     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     21   0.13773  3.41237  2.82274  3.31709     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     22   2.96979  3.62023  0.11367  3.52830     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     23   0.13773  3.41237  2.82274  3.31709     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     24   2.87262  0.30798  2.93783  1.86084     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     25   3.12114  2.61581  3.16804  0.17352     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     26   0.13773  3.41237  2.82274  3.31709     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     27   3.47007  0.12588  3.51795  2.85583     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     28   3.47007  0.12588  3.51795  2.85583     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     29   3.47007  0.12588  3.51795  2.85583     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     30   2.96979  3.62023  0.11367  3.52830     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     31   3.47007  0.12588  3.51795  2.85583     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     32   3.12114  2.61581  3.16804  0.17352     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     33   2.96979  3.62023  0.11367  3.52830     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     34   0.13773  3.41237  2.82274  3.31709     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     35   0.13773  3.41237  2.82274  3.31709     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     36   3.47007  0.12588  3.51795  2.85583     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     37   3.12114  2.61581  3.16804  0.17352     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     38   3.12114  2.61581  3.16804  0.17352     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     39   0.13773  3.41237  2.82274  3.31709     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     40   0.13773  3.41237  2.82274  3.31709     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     41   2.96979  3.62023  0.11367  3.52830     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     42   3.47007  0.12588  3.51795  2.85583     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     43   0.13773  3.41237  2.82274  3.31709     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     44   3.12114  2.61581  3.16804  0.17352     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
     45   0.13773  3.41237  2.82274  3.31709     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01827  4.01181        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Oomycota_4_LSU_start_fourteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:04:36 2012
NSEQ  25
EFFN  3.244019
CKSUM 208310769
STATS LOCAL MSV       -8.0010  0.71932
STATS LOCAL VITERBI   -7.6179  0.71932
STATS LOCAL FORWARD   -4.1225  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.16320  1.39502  1.52277  1.50697
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  0.00000        *
      1   0.14531  3.35475  2.78532  3.25400      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
      2   3.06292  2.57879  3.11206  0.18287      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
      3   3.06292  2.57879  3.11206  0.18287      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
      4   2.92964  3.56180  0.12004  3.46379      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
      5   2.92964  3.56180  0.12004  3.46379      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
      6   0.14531  3.35475  2.78532  3.25400      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
      7   3.40368  0.13377  3.45438  2.80752      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
      8   3.40368  0.13377  3.45438  2.80752      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
      9   3.06292  2.57879  3.11206  0.18287      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     10   2.92964  3.56180  0.12004  3.46379     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     11   0.14531  3.35475  2.78532  3.25400     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     12   3.06292  2.57879  3.11206  0.18287     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     13   0.14531  3.35475  2.78532  3.25400     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     14   3.06292  2.57879  3.11206  0.18287     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     15   3.40368  0.13377  3.45438  2.80752     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     16   0.14531  3.35475  2.78532  3.25400     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     17   2.92964  3.56180  0.12004  3.46379     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     18   2.92964  3.56180  0.12004  3.46379     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     19   3.40368  0.13377  3.45438  2.80752     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     20   0.14531  3.35475  2.78532  3.25400     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     21   0.14531  3.35475  2.78532  3.25400     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     22   2.92964  3.56180  0.12004  3.46379     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     23   0.14531  3.35475  2.78532  3.25400     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     24   3.06292  2.57879  3.11206  0.18287     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     25   3.06292  2.57879  3.11206  0.18287     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     26   0.14531  3.35475  2.78532  3.25400     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     27   3.40368  0.13377  3.45438  2.80752     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     28   3.40368  0.13377  3.45438  2.80752     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     29   3.40368  0.13377  3.45438  2.80752     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     30   2.92964  3.56180  0.12004  3.46379     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     31   3.40368  0.13377  3.45438  2.80752     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     32   3.06292  2.57879  3.11206  0.18287     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     33   2.92964  3.56180  0.12004  3.46379     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     34   0.14531  3.35475  2.78532  3.25400     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     35   0.14531  3.35475  2.78532  3.25400     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     36   3.40368  0.13377  3.45438  2.80752     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     37   3.06292  2.57879  3.11206  0.18287     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     38   3.06292  2.57879  3.11206  0.18287     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     39   0.14531  3.35475  2.78532  3.25400     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     40   0.14531  3.35475  2.78532  3.25400     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     41   2.92964  3.56180  0.12004  3.46379     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     42   3.40368  0.13377  3.45438  2.80752     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     43   0.14531  3.35475  2.78532  3.25400     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     44   0.14531  3.35475  2.78532  3.25400     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
     45   3.40368  0.13377  3.45438  2.80752     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01889  3.97856        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Oomycota_4_LSU_start_nine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:03:40 2012
NSEQ  19
EFFN  3.251709
CKSUM 1100350994
STATS LOCAL MSV       -7.8849  0.71932
STATS LOCAL VITERBI   -7.6655  0.71932
STATS LOCAL FORWARD   -3.9906  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.10878  1.46608  1.52006  1.51180
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  0.00000        *
      1   0.14497  3.35727  2.78696  3.25677      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
      2   0.14497  3.35727  2.78696  3.25677      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
      3   3.40659  0.13342  3.45717  2.80965      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
      4   2.93142  3.56437  0.11975  3.46663      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
      5   2.93142  3.56437  0.11975  3.46663      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
      6   0.14497  3.35727  2.78696  3.25677      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
      7   3.40659  0.13342  3.45717  2.80965      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
      8   3.40659  0.13342  3.45717  2.80965      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
      9   3.06546  2.58040  3.11450  0.18245      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     10   2.93142  3.56437  0.11975  3.46663     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     11   0.14497  3.35727  2.78696  3.25677     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     12   3.06546  2.58040  3.11450  0.18245     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     13   0.14497  3.35727  2.78696  3.25677     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     14   3.06546  2.58040  3.11450  0.18245     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     15   3.06546  2.58040  3.11450  0.18245     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     16   0.14497  3.35727  2.78696  3.25677     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     17   2.93142  3.56437  0.11975  3.46663     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     18   2.93142  3.56437  0.11975  3.46663     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     19   3.40659  0.13342  3.45717  2.80965     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     20   0.14497  3.35727  2.78696  3.25677     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     21   0.14497  3.35727  2.78696  3.25677     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     22   2.93142  3.56437  0.11975  3.46663     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     23   0.14497  3.35727  2.78696  3.25677     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     24   3.06546  2.58040  3.11450  0.18245     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     25   3.06546  2.58040  3.11450  0.18245     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     26   0.14497  3.35727  2.78696  3.25677     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     27   3.40659  0.13342  3.45717  2.80965     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     28   3.40659  0.13342  3.45717  2.80965     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     29   3.40659  0.13342  3.45717  2.80965     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     30   2.93142  3.56437  0.11975  3.46663     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     31   3.40659  0.13342  3.45717  2.80965     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     32   3.06546  2.58040  3.11450  0.18245     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     33   2.93142  3.56437  0.11975  3.46663     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     34   0.14497  3.35727  2.78696  3.25677     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     35   0.14497  3.35727  2.78696  3.25677     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     36   3.40659  0.13342  3.45717  2.80965     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     37   3.06546  2.58040  3.11450  0.18245     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     38   3.06546  2.58040  3.11450  0.18245     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     39   0.14497  3.35727  2.78696  3.25677     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     40   0.14497  3.35727  2.78696  3.25677     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     41   2.93142  3.56437  0.11975  3.46663     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     42   3.40659  0.13342  3.45717  2.80965     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     43   0.14497  3.35727  2.78696  3.25677     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     44   3.06546  2.58040  3.11450  0.18245     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
     45   0.14497  3.35727  2.78696  3.25677     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01886  3.98000        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Oomycota_4_LSU_start_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:02:29 2012
NSEQ  68
EFFN  3.324463
CKSUM 3362386651
STATS LOCAL MSV       -7.8671  0.71933
STATS LOCAL VITERBI   -7.7272  0.71933
STATS LOCAL FORWARD   -3.9336  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.11133  1.39673  1.69458  1.42796
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  0.00000        *
      1   3.08918  2.59551  3.13732  0.17858      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
      2   3.08918  2.59551  3.13732  0.17858      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
      3   3.08918  2.59551  3.13732  0.17858      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
      4   2.94793  3.58833  0.11710  3.49306      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
      5   2.94793  3.58833  0.11710  3.49306      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
      6   0.14182  3.38083  2.80229  3.28255      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
      7   3.43377  0.13013  3.48320  2.82948      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
      8   3.43377  0.13013  3.48320  2.82948      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
      9   3.08918  2.59551  3.13732  0.17858      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     10   2.94793  3.58833  0.11710  3.49306     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     11   0.14182  3.38083  2.80229  3.28255     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     12   3.08918  2.59551  3.13732  0.17858     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     13   0.14182  3.38083  2.80229  3.28255     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     14   3.08918  2.59551  3.13732  0.17858     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     15   3.43377  0.13013  3.48320  2.82948     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     16   0.14182  3.38083  2.80229  3.28255     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     17   0.14182  3.38083  2.80229  3.28255     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     18   0.14182  3.38083  2.80229  3.28255     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     19   3.43377  0.13013  3.48320  2.82948     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     20   0.14182  3.38083  2.80229  3.28255     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     21   0.14182  3.38083  2.80229  3.28255     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     22   2.94793  3.58833  0.11710  3.49306     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     23   0.14182  3.38083  2.80229  3.28255     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     24   3.07417  0.22287  3.13428  2.20709     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     25   3.08918  2.59551  3.13732  0.17858     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     26   0.14182  3.38083  2.80229  3.28255     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     27   3.43377  0.13013  3.48320  2.82948     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     28   3.43377  0.13013  3.48320  2.82948     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     29   3.43377  0.13013  3.48320  2.82948     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     30   2.94793  3.58833  0.11710  3.49306     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     31   3.43377  0.13013  3.48320  2.82948     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     32   3.08918  2.59551  3.13732  0.17858     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     33   2.94793  3.58833  0.11710  3.49306     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     34   0.14182  3.38083  2.80229  3.28255     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     35   0.14182  3.38083  2.80229  3.28255     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     36   3.43377  0.13013  3.48320  2.82948     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     37   3.08918  2.59551  3.13732  0.17858     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     38   3.08918  2.59551  3.13732  0.17858     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     39   0.14182  3.38083  2.80229  3.28255     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     40   0.14182  3.38083  2.80229  3.28255     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     41   2.94793  3.58833  0.11710  3.49306     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     42   3.43377  0.13013  3.48320  2.82948     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     43   0.14182  3.38083  2.80229  3.28255     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     44   3.08918  2.59551  3.13732  0.17858     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
     45   0.14182  3.38083  2.80229  3.28255     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01861  3.99350        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Oomycota_4_LSU_start_seven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:03:21 2012
NSEQ  8
EFFN  3.324219
CKSUM 4152346698
STATS LOCAL MSV       -8.0731  0.71933
STATS LOCAL VITERBI   -7.6102  0.71933
STATS LOCAL FORWARD   -4.1659  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.10749  1.61676  1.60160  1.31119
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  0.00000        *
      1   0.14183  3.38076  2.80224  3.28247      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      2   3.08911  2.59546  3.13724  0.17860      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      3   3.08911  2.59546  3.13724  0.17860      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      4   2.94787  3.58826  0.11710  3.49298      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      5   2.94787  3.58826  0.11710  3.49298      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      6   0.14183  3.38076  2.80224  3.28247      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      7   3.43368  0.13014  3.48311  2.82941      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      8   3.43368  0.13014  3.48311  2.82941      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      9   3.08911  2.59546  3.13724  0.17860      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     10   2.94787  3.58826  0.11710  3.49298     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     11   0.14183  3.38076  2.80224  3.28247     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     12   3.08911  2.59546  3.13724  0.17860     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     13   0.14183  3.38076  2.80224  3.28247     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     14   3.08911  2.59546  3.13724  0.17860     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     15   3.43368  0.13014  3.48311  2.82941     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     16   0.14183  3.38076  2.80224  3.28247     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     17   0.14183  3.38076  2.80224  3.28247     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     18   2.94787  3.58826  0.11710  3.49298     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     19   3.08911  2.59546  3.13724  0.17860     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     20   0.14183  3.38076  2.80224  3.28247     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     21   0.14183  3.38076  2.80224  3.28247     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     22   2.94787  3.58826  0.11710  3.49298     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     23   0.14183  3.38076  2.80224  3.28247     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     24   3.08911  2.59546  3.13724  0.17860     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     25   3.08911  2.59546  3.13724  0.17860     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     26   0.14183  3.38076  2.80224  3.28247     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     27   3.43368  0.13014  3.48311  2.82941     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     28   3.43368  0.13014  3.48311  2.82941     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     29   3.43368  0.13014  3.48311  2.82941     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     30   2.94787  3.58826  0.11710  3.49298     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     31   3.43368  0.13014  3.48311  2.82941     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     32   3.08911  2.59546  3.13724  0.17860     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     33   2.94787  3.58826  0.11710  3.49298     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     34   0.14183  3.38076  2.80224  3.28247     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     35   0.14183  3.38076  2.80224  3.28247     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     36   3.08911  2.59546  3.13724  0.17860     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     37   3.08911  2.59546  3.13724  0.17860     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     38   3.08911  2.59546  3.13724  0.17860     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     39   0.14183  3.38076  2.80224  3.28247     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     40   0.14183  3.38076  2.80224  3.28247     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     41   2.94787  3.58826  0.11710  3.49298     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     42   3.43368  0.13014  3.48311  2.82941     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     43   0.14183  3.38076  2.80224  3.28247     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     44   3.08911  2.59546  3.13724  0.17860     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     45   0.14183  3.38076  2.80224  3.28247     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01861  3.99346        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Oomycota_4_LSU_start_six_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:03:15 2012
NSEQ  5
EFFN  3.315430
CKSUM 3218924662
STATS LOCAL MSV       -8.1953  0.71933
STATS LOCAL VITERBI   -7.6957  0.71933
STATS LOCAL FORWARD   -4.0267  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.05857  1.53627  1.69177  1.37170
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  0.00000        *
      1   0.14220  3.37794  2.80041  3.27938      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      2   3.08626  2.59365  3.13451  0.17906      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      3   3.08626  2.59365  3.13451  0.17906      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      4   0.14220  3.37794  2.80041  3.27938      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      5   2.94591  3.58540  0.11742  3.48982      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      6   0.14220  3.37794  2.80041  3.27938      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      7   3.43043  0.13053  3.48000  2.82705      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      8   3.43043  0.13053  3.48000  2.82705      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      9   3.08626  2.59365  3.13451  0.17906      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     10   2.94591  3.58540  0.11742  3.48982     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     11   0.14220  3.37794  2.80041  3.27938     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     12   3.08626  2.59365  3.13451  0.17906     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     13   0.14220  3.37794  2.80041  3.27938     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     14   3.08626  2.59365  3.13451  0.17906     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     15   3.43043  0.13053  3.48000  2.82705     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     16   0.14220  3.37794  2.80041  3.27938     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     17   0.14220  3.37794  2.80041  3.27938     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     18   2.94591  3.58540  0.11742  3.48982     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     19   3.43043  0.13053  3.48000  2.82705     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     20   0.14220  3.37794  2.80041  3.27938     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     21   0.14220  3.37794  2.80041  3.27938     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     22   2.94591  3.58540  0.11742  3.48982     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     23   0.14220  3.37794  2.80041  3.27938     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     24   3.08626  2.59365  3.13451  0.17906     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     25   3.08626  2.59365  3.13451  0.17906     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     26   0.14220  3.37794  2.80041  3.27938     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     27   3.43043  0.13053  3.48000  2.82705     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     28   3.43043  0.13053  3.48000  2.82705     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     29   3.43043  0.13053  3.48000  2.82705     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     30   2.94591  3.58540  0.11742  3.48982     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     31   3.43043  0.13053  3.48000  2.82705     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     32   3.08626  2.59365  3.13451  0.17906     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     33   2.94591  3.58540  0.11742  3.48982     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     34   0.14220  3.37794  2.80041  3.27938     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     35   0.14220  3.37794  2.80041  3.27938     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     36   3.08626  2.59365  3.13451  0.17906     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     37   3.08626  2.59365  3.13451  0.17906     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     38   3.08626  2.59365  3.13451  0.17906     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     39   0.14220  3.37794  2.80041  3.27938     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     40   0.14220  3.37794  2.80041  3.27938     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     41   2.94591  3.58540  0.11742  3.48982     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     42   3.43043  0.13053  3.48000  2.82705     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     43   0.14220  3.37794  2.80041  3.27938     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     44   3.08626  2.59365  3.13451  0.17906     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     45   0.14220  3.37794  2.80041  3.27938     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01864  3.99184        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Oomycota_4_LSU_start_sixteena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:04:58 2012
NSEQ  3
EFFN  3.000000
CKSUM 197893464
STATS LOCAL MSV       -7.8866  0.72046
STATS LOCAL VITERBI   -7.6374  0.72046
STATS LOCAL FORWARD   -3.9677  0.72046
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.22010  1.45900  1.51859  1.37314
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   0.15719  3.27118  2.73043  3.16274     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.86982  3.47591  0.13017  3.36931     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Oomycota_4_LSU_start_sixteenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:05:04 2012
NSEQ  3
EFFN  3.000000
CKSUM 1405176074
STATS LOCAL MSV       -7.8729  0.72043
STATS LOCAL VITERBI   -7.7606  0.72043
STATS LOCAL FORWARD   -4.1703  0.72043
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.21871  1.53500  1.44288  1.37559
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.86982  3.47591  0.13017  3.36931     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Oomycota_4_LSU_start_ten_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:03:49 2012
NSEQ  3
EFFN  3.000000
CKSUM 199962319
STATS LOCAL MSV       -7.9029  0.72024
STATS LOCAL VITERBI   -7.5957  0.72024
STATS LOCAL FORWARD   -4.0138  0.72024
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.11432  1.39839  1.51667  1.58267
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Oomycota_4_LSU_start_thirteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:04:27 2012
NSEQ  5
EFFN  3.305664
CKSUM 121944797
STATS LOCAL MSV       -8.0146  0.71931
STATS LOCAL VITERBI   -7.7479  0.71931
STATS LOCAL FORWARD   -3.9997  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27539  1.45641  1.52589  1.30867
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  0.00000        *
      1   0.14262  3.37480  2.79837  3.27595      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      2   3.08310  2.59163  3.13146  0.17957      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      3   3.08310  2.59163  3.13146  0.17957      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      4   2.94371  3.58221  0.11777  3.48630      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      5   2.94371  3.58221  0.11777  3.48630      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      6   0.14262  3.37480  2.79837  3.27595      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      7   3.42681  0.13096  3.47654  2.82441      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      8   3.42681  0.13096  3.47654  2.82441      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      9   3.08310  2.59163  3.13146  0.17957      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     10   2.94371  3.58221  0.11777  3.48630     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     11   0.14262  3.37480  2.79837  3.27595     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     12   3.08310  2.59163  3.13146  0.17957     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     13   3.08310  2.59163  3.13146  0.17957     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     14   3.08310  2.59163  3.13146  0.17957     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     15   3.42681  0.13096  3.47654  2.82441     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     16   0.14262  3.37480  2.79837  3.27595     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     17   2.94371  3.58221  0.11777  3.48630     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     18   2.94371  3.58221  0.11777  3.48630     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     19   3.42681  0.13096  3.47654  2.82441     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     20   0.14262  3.37480  2.79837  3.27595     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     21   0.14262  3.37480  2.79837  3.27595     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     22   2.94371  3.58221  0.11777  3.48630     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     23   0.14262  3.37480  2.79837  3.27595     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     24   3.08310  2.59163  3.13146  0.17957     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     25   3.08310  2.59163  3.13146  0.17957     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     26   3.08310  2.59163  3.13146  0.17957     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     27   3.42681  0.13096  3.47654  2.82441     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     28   3.42681  0.13096  3.47654  2.82441     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     29   3.42681  0.13096  3.47654  2.82441     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     30   2.94371  3.58221  0.11777  3.48630     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     31   3.42681  0.13096  3.47654  2.82441     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     32   3.08310  2.59163  3.13146  0.17957     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     33   2.94371  3.58221  0.11777  3.48630     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     34   0.14262  3.37480  2.79837  3.27595     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     35   0.14262  3.37480  2.79837  3.27595     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     36   3.42681  0.13096  3.47654  2.82441     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     37   3.08310  2.59163  3.13146  0.17957     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     38   3.08310  2.59163  3.13146  0.17957     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     39   0.14262  3.37480  2.79837  3.27595     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     40   0.14262  3.37480  2.79837  3.27595     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     41   2.94371  3.58221  0.11777  3.48630     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     42   3.42681  0.13096  3.47654  2.82441     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     43   0.14262  3.37480  2.79837  3.27595     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     44   3.08310  2.59163  3.13146  0.17957     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     45   0.14262  3.37480  2.79837  3.27595     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01867  3.99003        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Oomycota_4_LSU_start_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:02:48 2012
NSEQ  13
EFFN  3.297607
CKSUM 517071543
STATS LOCAL MSV       -8.1345  0.71932
STATS LOCAL VITERBI   -7.5842  0.71932
STATS LOCAL FORWARD   -4.1111  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.16392  1.45927  1.60535  1.36838
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  0.00000        *
      1   3.08048  2.58997  3.12894  0.17999      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
      2   3.08048  2.58997  3.12894  0.17999      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
      3   3.08048  2.58997  3.12894  0.17999      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
      4   2.94190  3.57957  0.11806  3.48339      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
      5   2.94190  3.57957  0.11806  3.48339      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
      6   0.14296  3.37220  2.79669  3.27310      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
      7   3.42382  0.13132  3.47367  2.82223      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
      8   3.42382  0.13132  3.47367  2.82223      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
      9   3.08048  2.58997  3.12894  0.17999      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     10   2.94190  3.57957  0.11806  3.48339     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     11   0.14296  3.37220  2.79669  3.27310     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     12   3.08048  2.58997  3.12894  0.17999     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     13   0.14296  3.37220  2.79669  3.27310     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     14   3.08048  2.58997  3.12894  0.17999     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     15   3.42382  0.13132  3.47367  2.82223     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     16   0.14296  3.37220  2.79669  3.27310     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     17   2.94190  3.57957  0.11806  3.48339     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     18   0.14296  3.37220  2.79669  3.27310     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     19   3.42382  0.13132  3.47367  2.82223     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     20   0.14296  3.37220  2.79669  3.27310     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     21   0.14296  3.37220  2.79669  3.27310     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     22   2.94190  3.57957  0.11806  3.48339     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     23   0.14296  3.37220  2.79669  3.27310     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     24   3.42382  0.13132  3.47367  2.82223     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     25   3.08048  2.58997  3.12894  0.17999     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     26   0.14296  3.37220  2.79669  3.27310     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     27   3.42382  0.13132  3.47367  2.82223     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     28   3.42382  0.13132  3.47367  2.82223     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     29   3.42382  0.13132  3.47367  2.82223     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     30   2.94190  3.57957  0.11806  3.48339     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     31   3.42382  0.13132  3.47367  2.82223     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     32   3.08048  2.58997  3.12894  0.17999     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     33   2.94190  3.57957  0.11806  3.48339     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     34   0.14296  3.37220  2.79669  3.27310     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     35   0.14296  3.37220  2.79669  3.27310     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     36   3.08048  2.58997  3.12894  0.17999     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     37   3.08048  2.58997  3.12894  0.17999     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     38   3.08048  2.58997  3.12894  0.17999     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     39   0.14296  3.37220  2.79669  3.27310     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     40   0.14296  3.37220  2.79669  3.27310     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     41   2.94190  3.57957  0.11806  3.48339     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     42   3.42382  0.13132  3.47367  2.82223     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     43   0.14296  3.37220  2.79669  3.27310     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     44   3.08048  2.58997  3.12894  0.17999     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
     45   0.14296  3.37220  2.79669  3.27310     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01870  3.98854        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Oomycota_4_LSU_start_twelve_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:04:16 2012
NSEQ  3
EFFN  3.000000
CKSUM 1474323428
STATS LOCAL MSV       -7.8855  0.72052
STATS LOCAL VITERBI   -7.6818  0.72052
STATS LOCAL FORWARD   -4.0882  0.72052
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.16636  1.45838  1.59742  1.37250
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.97980  2.52563  3.03204  0.19727     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Oomycota_4_LSU_start_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:02:40 2012
NSEQ  8
EFFN  3.425781
CKSUM 1590920301
STATS LOCAL MSV       -7.4532  0.71932
STATS LOCAL VITERBI   -7.5721  0.71932
STATS LOCAL FORWARD   -4.2046  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.19206  1.45567  1.57364  1.36308
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  0.00000        *
      1   3.12148  2.61603  3.16838  0.17347      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
      2   3.12148  2.61603  3.16838  0.17347      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
      3   3.12148  2.61603  3.16838  0.17347      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
      4   2.97003  3.62058  0.11363  3.52868      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
      5   2.97003  3.62058  0.11363  3.52868      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
      6   0.13768  3.41271  2.82296  3.31747      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
      7   3.47046  0.12584  3.51832  2.85611      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
      8   3.47046  0.12584  3.51832  2.85611      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
      9   3.12148  2.61603  3.16838  0.17347      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     10   2.97003  3.62058  0.11363  3.52868     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     11   0.13768  3.41271  2.82296  3.31747     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     12   3.12148  2.61603  3.16838  0.17347     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     13   0.13768  3.41271  2.82296  3.31747     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     14   3.12148  2.61603  3.16838  0.17347     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     15   3.47046  0.12584  3.51832  2.85611     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     16   0.13768  3.41271  2.82296  3.31747     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     17   0.85736  2.53227  0.90541  2.38746     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     18   2.97003  3.62058  0.11363  3.52868     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     19   3.12148  2.61603  3.16838  0.17347     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     20   0.13768  3.41271  2.82296  3.31747     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     21   0.13768  3.41271  2.82296  3.31747     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     22   2.97003  3.62058  0.11363  3.52868     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     23   0.13768  3.41271  2.82296  3.31747     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     24   3.47046  0.12584  3.51832  2.85611     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     25   3.12148  2.61603  3.16838  0.17347     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     26   0.13768  3.41271  2.82296  3.31747     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     27   3.47046  0.12584  3.51832  2.85611     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     28   3.47046  0.12584  3.51832  2.85611     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     29   3.47046  0.12584  3.51832  2.85611     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     30   2.97003  3.62058  0.11363  3.52868     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     31   3.47046  0.12584  3.51832  2.85611     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     32   3.12148  2.61603  3.16838  0.17347     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     33   2.97003  3.62058  0.11363  3.52868     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     34   0.13768  3.41271  2.82296  3.31747     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     35   0.13768  3.41271  2.82296  3.31747     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     36   3.47046  0.12584  3.51832  2.85611     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     37   3.12148  2.61603  3.16838  0.17347     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     38   3.12148  2.61603  3.16838  0.17347     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     39   0.13768  3.41271  2.82296  3.31747     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     40   0.13768  3.41271  2.82296  3.31747     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     41   2.97003  3.62058  0.11363  3.52868     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     42   3.47046  0.12584  3.51832  2.85611     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     43   0.13768  3.41271  2.82296  3.31747     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     44   3.12148  2.61603  3.16838  0.17347     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
     45   0.13768  3.41271  2.82296  3.31747     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01826  4.01201        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Oomycota_1_SSU_end_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan 21 16:12:25 2012
NSEQ  304
EFFN  3.279541
CKSUM 1893751502
STATS LOCAL MSV       -8.0320  0.71934
STATS LOCAL VITERBI   -7.6889  0.71934
STATS LOCAL FORWARD   -4.1095  0.71934
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27125  1.62696  1.24907  1.44298
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  0.00000        *
      1   0.16236  3.29644  2.63327  3.19393      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
      2   2.68931  3.30870  0.16605  3.02614      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
      3   3.07459  2.58622  3.12328  0.18095      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
      4   3.41707  0.13214  3.46721  2.81731      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
      5   2.93780  3.57362  0.11872  3.47683      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
      6   3.07459  2.58622  3.12328  0.18095      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
      7   0.14375  3.36635  2.79288  3.26670      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
      8   0.14375  3.36635  2.79288  3.26670      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
      9   3.41707  0.13214  3.46721  2.81731      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     10   0.14375  3.36635  2.79288  3.26670     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     11   0.15678  3.31683  2.67806  3.21534     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     12   2.93780  3.57362  0.11872  3.47683     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     13   2.93780  3.57362  0.11872  3.47683     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     14   3.07459  2.58622  3.12328  0.18095     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     15   3.07459  2.58622  3.12328  0.18095     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     16   3.03126  2.47943  3.08134  0.19595     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     17   3.35118  0.14643  3.40314  2.68969     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     18   3.41707  0.13214  3.46721  2.81731     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     19   2.93780  3.57362  0.11872  3.47683     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     20   3.07459  2.58622  3.12328  0.18095     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     21   0.14375  3.36635  2.79288  3.26670     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.06604  4.00361  3.08663  1.46634  0.26236  1.09861  0.40547
     22   2.90239  3.52248  0.12456  3.42049     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97582  3.97582  1.46634  0.26236  0.58748  0.81131
     23   2.93780  3.57362  0.11872  3.47683     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     24   3.07459  2.58622  3.12328  0.18095     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     25   2.93780  3.57362  0.11872  3.47683     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     26   0.14375  3.36635  2.79288  3.26670     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     27   0.14375  3.36635  2.79288  3.26670     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.05071  4.00361  3.46743  1.46634  0.26236  1.09861  0.40547
     28   3.39016  0.13545  3.44142  2.79762     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99057  3.99057  1.46634  0.26236  0.77471  0.61774
     29   3.41707  0.13214  3.46721  2.81731     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     30   3.07459  2.58622  3.12328  0.18095     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     31   2.93780  3.57362  0.11872  3.47683     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     32   3.41707  0.13214  3.46721  2.81731     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     33   2.93780  3.57362  0.11872  3.47683     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     34   2.93780  3.57362  0.11872  3.47683     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     35   0.14375  3.36635  2.79288  3.26670     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     36   0.14375  3.36635  2.79288  3.26670     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     37   2.93780  3.57362  0.11872  3.47683     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     38   2.93780  3.57362  0.11872  3.47683     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     39   0.14375  3.36635  2.79288  3.26670     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     40   3.07459  2.58622  3.12328  0.18095     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     41   3.41707  0.13214  3.46721  2.81731     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     42   0.14375  3.36635  2.79288  3.26670     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     43   3.07459  2.58622  3.12328  0.18095     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     44   3.07459  2.58622  3.12328  0.18095     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
     45   0.14375  3.36635  2.79288  3.26670     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01876  3.98519        *  1.46634  0.26236  0.00000        *
//