view ITSx_db/HMMs/H.hmm @ 2:7c914d783d36 draft

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date Tue, 24 Mar 2015 16:47:42 -0400
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HMMER3/b [3.0 | March 2010]
NAME  3_End_Rhodophyta_58S_end_four_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 21:56:19 2012
NSEQ  2
EFFN  2.000000
CKSUM 3310020795
STATS LOCAL MSV       -7.3962  0.72785
STATS LOCAL VITERBI   -8.3431  0.72785
STATS LOCAL FORWARD   -3.4147  0.72785
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39505  1.59495  1.20617  1.38662
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Rhodophyta_58S_end_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 21:55:52 2012
NSEQ  4
EFFN  3.332031
CKSUM 3304563817
STATS LOCAL MSV       -8.0466  0.71932
STATS LOCAL VITERBI   -7.7427  0.71932
STATS LOCAL FORWARD   -4.1192  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92744  1.42765  1.08593  1.28366
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  0.00000        *
      1   2.94961  3.59079  0.11683  3.49577      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      2   3.43655  0.12980  3.48587  2.83150      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      3   2.94961  3.59079  0.11683  3.49577      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      4   3.43655  0.12980  3.48587  2.83150      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      5   3.09163  2.59706  3.13967  0.17819      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      6   3.43655  0.12980  3.48587  2.83150      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      7   2.94961  3.59079  0.11683  3.49577      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      8   3.43655  0.12980  3.48587  2.83150      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      9   2.94961  3.59079  0.11683  3.49577      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     10   2.94961  3.59079  0.11683  3.49577     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     11   2.94961  3.59079  0.11683  3.49577     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     12   3.09163  2.59706  3.13967  0.17819     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     13   0.14150  3.38325  2.80387  3.28520     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     14   0.14150  3.38325  2.80387  3.28520     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     15   3.09163  2.59706  3.13967  0.17819     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     16   3.43655  0.12980  3.48587  2.83150     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     17   3.43655  0.12980  3.48587  2.83150     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     18   3.09163  2.59706  3.13967  0.17819     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     19   2.94961  3.59079  0.11683  3.49577     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     20   3.43655  0.12980  3.48587  2.83150     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     21   2.94961  3.59079  0.11683  3.49577     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     22   0.14150  3.38325  2.80387  3.28520     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     23   2.94961  3.59079  0.11683  3.49577     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     24   3.43655  0.12980  3.48587  2.83150     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     25   0.14150  3.38325  2.80387  3.28520     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     26   2.94961  3.59079  0.11683  3.49577     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     27   2.94961  3.59079  0.11683  3.49577     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     28   3.09163  2.59706  3.13967  0.17819     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     29   3.43655  0.12980  3.48587  2.83150     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     30   3.09163  2.59706  3.13967  0.17819     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     31   2.94961  3.59079  0.11683  3.49577     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     32   3.09163  2.59706  3.13967  0.17819     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     33   3.09163  2.59706  3.13967  0.17819     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     34   3.09163  2.59706  3.13967  0.17819     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     35   2.94961  3.59079  0.11683  3.49577     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     36   0.14150  3.38325  2.80387  3.28520     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     37   2.94961  3.59079  0.11683  3.49577     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     38   3.09163  2.59706  3.13967  0.17819     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     39   2.94961  3.59079  0.11683  3.49577     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     40   3.09163  2.59706  3.13967  0.17819     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     41   3.43655  0.12980  3.48587  2.83150     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     42   3.09163  2.59706  3.13967  0.17819     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     43   2.94961  3.59079  0.11683  3.49577     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     44   3.09163  2.59706  3.13967  0.17819     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     45   2.40704  0.95719  2.47912  0.81615     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01858  3.99490        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Rhodophyta_58S_end_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 21:56:09 2012
NSEQ  3
EFFN  3.000000
CKSUM 86740024
STATS LOCAL MSV       -7.8986  0.72037
STATS LOCAL VITERBI   -7.8442  0.72037
STATS LOCAL FORWARD   -4.0185  0.72037
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.71607  1.38208  1.25621  1.25722
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.86982  3.47591  0.13017  3.36931     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   0.15719  3.27118  2.73043  3.16274     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   3.30705  0.14631  3.36166  2.73626     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   0.15719  3.27118  2.73043  3.16274     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.97980  2.52563  3.03204  0.19727     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   3.30705  0.14631  3.36166  2.73626     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   3.30705  0.14631  3.36166  2.73626     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Rhodophyta_58S_end_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 21:56:01 2012
NSEQ  34
EFFN  3.407471
CKSUM 2094048478
STATS LOCAL MSV       -7.3795  0.71932
STATS LOCAL VITERBI   -7.7183  0.71932
STATS LOCAL FORWARD   -4.1784  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81952  1.29666  1.13881  1.40956
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  0.00000        *
      1   2.96611  3.61484  0.11424  3.52234      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
      2   3.00826  0.25008  3.07015  2.07568      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
      3   2.96611  3.61484  0.11424  3.52234      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
      4   3.46393  0.12659  3.51207  2.85138      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
      5   3.11571  2.61236  3.16282  0.17437      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
      6   3.46393  0.12659  3.51207  2.85138      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
      7   2.67126  3.47362  0.14439  3.37328      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
      8   3.06101  0.23141  3.12147  2.15715      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
      9   2.96611  3.61484  0.11424  3.52234      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     10   2.96611  3.61484  0.11424  3.52234     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     11   2.96611  3.61484  0.11424  3.52234     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     12   2.64465  0.44934  2.71441  1.49311     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     13   0.13841  3.40703  2.81928  3.31124     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     14   0.13841  3.40703  2.81928  3.31124     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     15   3.11571  2.61236  3.16282  0.17437     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     16   3.46393  0.12659  3.51207  2.85138     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     17   3.46393  0.12659  3.51207  2.85138     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     18   3.11571  2.61236  3.16282  0.17437     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     19   2.96611  3.61484  0.11424  3.52234     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     20   3.46393  0.12659  3.51207  2.85138     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     21   2.96611  3.61484  0.11424  3.52234     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     22   0.13841  3.40703  2.81928  3.31124     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     23   2.96611  3.61484  0.11424  3.52234     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     24   3.46393  0.12659  3.51207  2.85138     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     25   0.13841  3.40703  2.81928  3.31124     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     26   3.11571  2.61236  3.16282  0.17437     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     27   2.96611  3.61484  0.11424  3.52234     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     28   3.11571  2.61236  3.16282  0.17437     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     29   3.46393  0.12659  3.51207  2.85138     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     30   3.11571  2.61236  3.16282  0.17437     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     31   2.96611  3.61484  0.11424  3.52234     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     32   3.11571  2.61236  3.16282  0.17437     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     33   3.11571  2.61236  3.16282  0.17437     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     34   3.11571  2.61236  3.16282  0.17437     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     35   2.96611  3.61484  0.11424  3.52234     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     36   0.13841  3.40703  2.81928  3.31124     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     37   2.96611  3.61484  0.11424  3.52234     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     38   3.11571  2.61236  3.16282  0.17437     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     39   2.96611  3.61484  0.11424  3.52234     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     40   3.11571  2.61236  3.16282  0.17437     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     41   3.46393  0.12659  3.51207  2.85138     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     42   3.46393  0.12659  3.51207  2.85138     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     43   2.96611  3.61484  0.11424  3.52234     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     44   3.20481  0.18755  3.26108  2.38493     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
     45   0.13841  3.40703  2.81928  3.31124     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01832  4.00869        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhodophyta_58S_start_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 21:42:52 2012
NSEQ  4
EFFN  3.175781
CKSUM 3810186819
STATS LOCAL MSV       -8.1688  0.71933
STATS LOCAL VITERBI   -7.7118  0.71933
STATS LOCAL FORWARD   -4.1218  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40693  1.26714  1.31628  1.58309
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  0.00000        *
      1   3.37748  0.13704  3.42926  2.78832      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      2   2.91360  3.53861  0.12268  3.43825      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      3   0.14843  3.33206  2.77050  3.22920      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      4   3.37748  0.13704  3.42926  2.78832      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      5   3.37748  0.13704  3.42926  2.78832      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      6   3.37748  0.13704  3.42926  2.78832      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      7   2.91360  3.53861  0.12268  3.43825      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      8   3.04021  2.56430  3.09020  0.18668      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      9   0.14843  3.33206  2.77050  3.22920      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     10   0.14843  3.33206  2.77050  3.22920     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     11   3.04021  2.56430  3.09020  0.18668     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     12   2.91360  3.53861  0.12268  3.43825     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     13   2.91360  3.53861  0.12268  3.43825     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     14   3.04021  2.56430  3.09020  0.18668     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     15   2.91360  3.53861  0.12268  3.43825     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     16   2.91360  3.53861  0.12268  3.43825     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     17   0.14843  3.33206  2.77050  3.22920     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     18   3.04021  2.56430  3.09020  0.18668     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     19   2.91360  3.53861  0.12268  3.43825     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     20   3.04021  2.56430  3.09020  0.18668     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     21   3.37748  0.13704  3.42926  2.78832     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     22   3.04021  2.56430  3.09020  0.18668     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     23   3.37748  0.13704  3.42926  2.78832     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     24   2.91360  3.53861  0.12268  3.43825     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     25   2.91360  3.53861  0.12268  3.43825     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     26   3.37748  0.13704  3.42926  2.78832     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     27   3.04021  2.56430  3.09020  0.18668     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     28   3.37748  0.13704  3.42926  2.78832     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     29   3.37748  0.13704  3.42926  2.78832     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     30   3.37748  0.13704  3.42926  2.78832     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     31   0.14843  3.33206  2.77050  3.22920     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     32   3.37748  0.13704  3.42926  2.78832     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     33   0.14843  3.33206  2.77050  3.22920     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     34   3.04021  2.56430  3.09020  0.18668     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     35   3.37748  0.13704  3.42926  2.78832     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     36   2.91360  3.53861  0.12268  3.43825     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     37   0.14843  3.33206  2.77050  3.22920     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     38   3.04021  2.56430  3.09020  0.18668     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     39   2.91360  3.53861  0.12268  3.43825     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     40   0.14843  3.33206  2.77050  3.22920     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     41   0.14843  3.33206  2.77050  3.22920     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     42   2.91360  3.53861  0.12268  3.43825     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     43   0.14843  3.33206  2.77050  3.22920     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     44   0.14843  3.33206  2.77050  3.22920     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     45   3.37748  0.13704  3.42926  2.78832     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01914  3.96571        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhodophyta_58S_start_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 21:44:17 2012
NSEQ  4
EFFN  3.324219
CKSUM 2806458298
STATS LOCAL MSV       -8.2402  0.71932
STATS LOCAL VITERBI   -7.5865  0.71932
STATS LOCAL FORWARD   -3.9489  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.16164  1.28185  1.60749  1.56488
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  0.00000        *
      1   2.63347  0.44817  2.70341  1.50328      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      2   0.14183  3.38076  2.80224  3.28247      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      3   0.14183  3.38076  2.80224  3.28247      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      4   3.43368  0.13014  3.48311  2.82941      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      5   3.08911  2.59546  3.13724  0.17860      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      6   3.43368  0.13014  3.48311  2.82941      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      7   3.08911  2.59546  3.13724  0.17860      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      8   3.43368  0.13014  3.48311  2.82941      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      9   0.14183  3.38076  2.80224  3.28247      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     10   0.14183  3.38076  2.80224  3.28247     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     11   3.43368  0.13014  3.48311  2.82941     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     12   0.14183  3.38076  2.80224  3.28247     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     13   0.14183  3.38076  2.80224  3.28247     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     14   3.43368  0.13014  3.48311  2.82941     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     15   2.94787  3.58826  0.11710  3.49298     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     16   2.94787  3.58826  0.11710  3.49298     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     17   0.14183  3.38076  2.80224  3.28247     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     18   3.08911  2.59546  3.13724  0.17860     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     19   0.14183  3.38076  2.80224  3.28247     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     20   3.08911  2.59546  3.13724  0.17860     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     21   3.43368  0.13014  3.48311  2.82941     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     22   3.08911  2.59546  3.13724  0.17860     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     23   3.08911  2.59546  3.13724  0.17860     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     24   2.94787  3.58826  0.11710  3.49298     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     25   2.94787  3.58826  0.11710  3.49298     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     26   3.43368  0.13014  3.48311  2.82941     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     27   3.08911  2.59546  3.13724  0.17860     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     28   3.43368  0.13014  3.48311  2.82941     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     29   3.08911  2.59546  3.13724  0.17860     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     30   3.43368  0.13014  3.48311  2.82941     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     31   2.94787  3.58826  0.11710  3.49298     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     32   3.43368  0.13014  3.48311  2.82941     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     33   0.14183  3.38076  2.80224  3.28247     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     34   0.14183  3.38076  2.80224  3.28247     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     35   3.43368  0.13014  3.48311  2.82941     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     36   2.94787  3.58826  0.11710  3.49298     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     37   0.14183  3.38076  2.80224  3.28247     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     38   3.08911  2.59546  3.13724  0.17860     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     39   2.94787  3.58826  0.11710  3.49298     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     40   0.14183  3.38076  2.80224  3.28247     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     41   0.14183  3.38076  2.80224  3.28247     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     42   2.94787  3.58826  0.11710  3.49298     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     43   0.14183  3.38076  2.80224  3.28247     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     44   0.14183  3.38076  2.80224  3.28247     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     45   3.43368  0.13014  3.48311  2.82941     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01861  3.99346        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhodophyta_58S_start_twoa_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 21:43:01 2012
NSEQ  4
EFFN  3.363281
CKSUM 3693864443
STATS LOCAL MSV       -8.0312  0.71931
STATS LOCAL VITERBI   -7.6530  0.71931
STATS LOCAL FORWARD   -4.6865  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.30997  1.36794  1.37527  1.50161
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  0.00000        *
      1   0.94201  1.03323  2.14067  1.98979      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      2   0.14020  3.39317  2.81030  3.29606      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      3   0.14020  3.39317  2.81030  3.29606      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      4   3.44798  0.12845  3.49681  2.83981      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      5   3.10166  2.60344  3.14932  0.17659      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      6   3.44798  0.12845  3.49681  2.83981      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      7   2.95651  3.60084  0.11574  3.50687      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      8   3.10166  2.60344  3.14932  0.17659      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      9   0.14020  3.39317  2.81030  3.29606      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     10   0.14020  3.39317  2.81030  3.29606     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     11   3.44798  0.12845  3.49681  2.83981     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     12   2.95651  3.60084  0.11574  3.50687     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     13   2.95651  3.60084  0.11574  3.50687     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     14   3.10166  2.60344  3.14932  0.17659     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     15   2.95651  3.60084  0.11574  3.50687     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     16   2.95651  3.60084  0.11574  3.50687     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     17   0.14020  3.39317  2.81030  3.29606     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     18   3.10166  2.60344  3.14932  0.17659     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     19   2.95651  3.60084  0.11574  3.50687     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     20   3.10166  2.60344  3.14932  0.17659     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     21   3.44798  0.12845  3.49681  2.83981     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     22   3.10166  2.60344  3.14932  0.17659     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     23   3.10166  2.60344  3.14932  0.17659     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     24   2.95651  3.60084  0.11574  3.50687     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     25   2.95651  3.60084  0.11574  3.50687     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     26   3.44798  0.12845  3.49681  2.83981     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     27   3.10166  2.60344  3.14932  0.17659     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     28   3.44798  0.12845  3.49681  2.83981     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     29   3.44798  0.12845  3.49681  2.83981     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     30   3.44798  0.12845  3.49681  2.83981     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     31   0.14020  3.39317  2.81030  3.29606     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     32   3.44798  0.12845  3.49681  2.83981     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     33   0.14020  3.39317  2.81030  3.29606     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     34   3.10166  2.60344  3.14932  0.17659     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     35   3.44798  0.12845  3.49681  2.83981     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     36   2.95651  3.60084  0.11574  3.50687     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     37   0.14020  3.39317  2.81030  3.29606     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     38   3.10166  2.60344  3.14932  0.17659     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     39   2.95651  3.60084  0.11574  3.50687     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     40   0.14020  3.39317  2.81030  3.29606     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     41   0.14020  3.39317  2.81030  3.29606     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     42   2.95651  3.60084  0.11574  3.50687     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     43   0.14020  3.39317  2.81030  3.29606     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     44   0.14020  3.39317  2.81030  3.29606     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     45   3.44798  0.12845  3.49681  2.83981     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01847  4.00063        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhodophyta_58S_start_twob_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 21:43:07 2012
NSEQ  17
EFFN  3.399170
CKSUM 1249095045
STATS LOCAL MSV       -7.3126  0.71931
STATS LOCAL VITERBI   -7.5101  0.71931
STATS LOCAL FORWARD   -4.2778  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26013  1.46710  1.22336  1.65261
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  0.00000        *
      1   0.13874  3.40444  2.81761  3.30841      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
      2   0.13874  3.40444  2.81761  3.30841      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
      3   0.13874  3.40444  2.81761  3.30841      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
      4   3.46095  0.12694  3.50922  2.84922      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
      5   3.11308  2.61070  3.16030  0.17478      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
      6   3.46095  0.12694  3.50922  2.84922      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
      7   2.96432  3.61223  0.11452  3.51946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
      8   3.11308  2.61070  3.16030  0.17478      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
      9   2.96432  3.61223  0.11452  3.51946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     10   0.13874  3.40444  2.81761  3.30841     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     11   3.46095  0.12694  3.50922  2.84922     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     12   2.96432  3.61223  0.11452  3.51946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     13   2.96432  3.61223  0.11452  3.51946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     14   3.11308  2.61070  3.16030  0.17478     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     15   2.96432  3.61223  0.11452  3.51946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     16   2.96432  3.61223  0.11452  3.51946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     17   0.13874  3.40444  2.81761  3.30841     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     18   3.11308  2.61070  3.16030  0.17478     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     19   2.96432  3.61223  0.11452  3.51946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     20   3.11308  2.61070  3.16030  0.17478     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     21   3.46095  0.12694  3.50922  2.84922     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     22   3.11308  2.61070  3.16030  0.17478     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     23   0.50827  2.40841  2.29505  1.57141     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     24   2.96432  3.61223  0.11452  3.51946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     25   2.96432  3.61223  0.11452  3.51946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     26   3.46095  0.12694  3.50922  2.84922     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     27   3.11308  2.61070  3.16030  0.17478     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     28   3.46095  0.12694  3.50922  2.84922     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     29   3.46095  0.12694  3.50922  2.84922     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     30   0.77807  2.53217  0.99592  2.38768     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     31   2.96432  3.61223  0.11452  3.51946     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     32   3.46095  0.12694  3.50922  2.84922     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     33   0.13874  3.40444  2.81761  3.30841     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     34   0.13874  3.40444  2.81761  3.30841     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     35   3.46095  0.12694  3.50922  2.84922     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     36   2.96432  3.61223  0.11452  3.51946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     37   0.13874  3.40444  2.81761  3.30841     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     38   3.11308  2.61070  3.16030  0.17478     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     39   2.96432  3.61223  0.11452  3.51946     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     40   0.13874  3.40444  2.81761  3.30841     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     41   0.13874  3.40444  2.81761  3.30841     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     42   2.96432  3.61223  0.11452  3.51946     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     43   0.13874  3.40444  2.81761  3.30841     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     44   0.13874  3.40444  2.81761  3.30841     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
     45   3.46095  0.12694  3.50922  2.84922     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01835  4.00718        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhodophyta_58S_start_twoc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 21:43:14 2012
NSEQ  2
EFFN  2.000000
CKSUM 361171468
STATS LOCAL MSV       -7.5783  0.72809
STATS LOCAL VITERBI   -8.1252  0.72809
STATS LOCAL FORWARD   -3.2306  0.72809
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26706  1.29688  1.35098  1.68215
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   0.23862  2.84929  2.43386  2.70756     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.92825  2.28391  0.95698  2.13014     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhodophyta_58S_start_twod_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 21:43:28 2012
NSEQ  3
EFFN  3.000000
CKSUM 3586106311
STATS LOCAL MSV       -8.0967  0.72012
STATS LOCAL VITERBI   -7.6587  0.72012
STATS LOCAL FORWARD   -4.5849  0.72012
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27863  1.33133  1.37926  1.58138
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.86982  3.47591  0.13017  3.36931      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.97980  2.52563  3.03204  0.19727      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   0.15719  3.27118  2.73043  3.16274      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   0.15719  3.27118  2.73043  3.16274     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   3.30705  0.14631  3.36166  2.73626     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.97980  2.52563  3.03204  0.19727     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.97980  2.52563  3.03204  0.19727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   0.15719  3.27118  2.73043  3.16274     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   0.15719  3.27118  2.73043  3.16274     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhodophyta_58S_start_twoe_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 21:43:35 2012
NSEQ  6
EFFN  3.202148
CKSUM 2099097258
STATS LOCAL MSV       -8.0529  0.71932
STATS LOCAL VITERBI   -7.6277  0.71932
STATS LOCAL FORWARD   -4.5099  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.21596  1.39906  1.37774  1.58670
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  0.00000        *
      1   0.14721  3.34089  2.77627  3.23885      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
      2   0.14721  3.34089  2.77627  3.23885      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
      3   0.14721  3.34089  2.77627  3.23885      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
      4   3.38768  0.13576  3.43904  2.79581      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
      5   3.04904  2.56994  3.09869  0.18519      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
      6   3.38768  0.13576  3.43904  2.79581      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
      7   2.91986  3.54765  0.12164  3.44820      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
      8   3.04904  2.56994  3.09869  0.18519      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
      9   2.91986  3.54765  0.12164  3.44820      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     10   0.14721  3.34089  2.77627  3.23885     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     11   3.38768  0.13576  3.43904  2.79581     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     12   2.91986  3.54765  0.12164  3.44820     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     13   2.91986  3.54765  0.12164  3.44820     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     14   0.14721  3.34089  2.77627  3.23885     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     15   2.91986  3.54765  0.12164  3.44820     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     16   2.91986  3.54765  0.12164  3.44820     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     17   0.14721  3.34089  2.77627  3.23885     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     18   3.04904  2.56994  3.09869  0.18519     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     19   0.14721  3.34089  2.77627  3.23885     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     20   3.04904  2.56994  3.09869  0.18519     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     21   3.38768  0.13576  3.43904  2.79581     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     22   3.04904  2.56994  3.09869  0.18519     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     23   3.04904  2.56994  3.09869  0.18519     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     24   2.91986  3.54765  0.12164  3.44820     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     25   2.91986  3.54765  0.12164  3.44820     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     26   3.38768  0.13576  3.43904  2.79581     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     27   3.04904  2.56994  3.09869  0.18519     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     28   3.38768  0.13576  3.43904  2.79581     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     29   3.38768  0.13576  3.43904  2.79581     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     30   3.38768  0.13576  3.43904  2.79581     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     31   0.14721  3.34089  2.77627  3.23885     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     32   3.38768  0.13576  3.43904  2.79581     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     33   0.14721  3.34089  2.77627  3.23885     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     34   3.04904  2.56994  3.09869  0.18519     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     35   3.38768  0.13576  3.43904  2.79581     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     36   2.91986  3.54765  0.12164  3.44820     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     37   0.14721  3.34089  2.77627  3.23885     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     38   3.04904  2.56994  3.09869  0.18519     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     39   2.91986  3.54765  0.12164  3.44820     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     40   0.14721  3.34089  2.77627  3.23885     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     41   0.14721  3.34089  2.77627  3.23885     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     42   2.91986  3.54765  0.12164  3.44820     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     43   0.14721  3.34089  2.77627  3.23885     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     44   0.14721  3.34089  2.77627  3.23885     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03773  3.98938  3.98938  1.46634  0.26236  1.09861  0.40547
     45   3.38768  0.13576  3.43904  2.79581     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01904  3.97070        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhodophyta_58S_start_twof_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 21:43:44 2012
NSEQ  2
EFFN  2.000000
CKSUM 538168776
STATS LOCAL MSV       -7.5903  0.72774
STATS LOCAL VITERBI   -8.2624  0.72774
STATS LOCAL FORWARD   -3.7407  0.72774
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28897  1.34866  1.37416  1.55209
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.23862  2.84929  2.43386  2.70756     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhodophyta_58S_start_twog_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 21:43:53 2012
NSEQ  2
EFFN  2.000000
CKSUM 433536473
STATS LOCAL MSV       -7.5756  0.72824
STATS LOCAL VITERBI   -8.2789  0.72824
STATS LOCAL FORWARD   -3.5811  0.72824
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33746  1.38280  1.31433  1.52346
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.15554  1.00938  2.23102  0.88601     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   0.23862  2.84929  2.43386  2.70756     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhodophyta_58S_start_twoh_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 21:44:05 2012
NSEQ  2
EFFN  2.000000
CKSUM 629811214
STATS LOCAL MSV       -7.3522  0.72804
STATS LOCAL VITERBI   -8.2940  0.72804
STATS LOCAL FORWARD   -3.7313  0.72804
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34240  1.34077  1.43638  1.42982
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.23862  2.84929  2.43386  2.70756     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhodophyta_4_LSU_start_five_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 22:10:04 2012
NSEQ  2
EFFN  2.000000
CKSUM 4069474395
STATS LOCAL MSV       -7.4758  0.72803
STATS LOCAL VITERBI   -8.1006  0.72803
STATS LOCAL FORWARD   -3.3098  0.72803
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.19186  1.40481  1.49426  1.48495
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhodophyta_4_LSU_start_four_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 22:09:48 2012
NSEQ  40
EFFN  3.276367
CKSUM 565607296
STATS LOCAL MSV       -8.0920  0.71934
STATS LOCAL VITERBI   -7.6656  0.71934
STATS LOCAL FORWARD   -3.9440  0.71934
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.11205  1.39822  1.60365  1.50094
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  0.00000        *
      1   3.07355  2.58556  3.12228  0.18112      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
      2   3.07355  2.58556  3.12228  0.18112      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
      3   3.07355  2.58556  3.12228  0.18112      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
      4   2.93708  3.57257  0.11883  3.47567      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
      5   2.93708  3.57257  0.11883  3.47567      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
      6   0.14388  3.36532  2.79221  3.26557      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
      7   3.07355  2.58556  3.12228  0.18112      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
      8   3.41588  0.13228  3.46607  2.81644      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
      9   3.07355  2.58556  3.12228  0.18112      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     10   3.41588  0.13228  3.46607  2.81644     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     11   0.14388  3.36532  2.79221  3.26557     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     12   0.14388  3.36532  2.79221  3.26557     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     13   0.14388  3.36532  2.79221  3.26557     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     14   3.07355  2.58556  3.12228  0.18112     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     15   3.41588  0.13228  3.46607  2.81644     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     16   0.14388  3.36532  2.79221  3.26557     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     17   2.93708  3.57257  0.11883  3.47567     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     18   0.14388  3.36532  2.79221  3.26557     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     19   3.19001  0.18613  3.24682  2.41058     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     20   0.14388  3.36532  2.79221  3.26557     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     21   0.14388  3.36532  2.79221  3.26557     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     22   2.93708  3.57257  0.11883  3.47567     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     23   0.14388  3.36532  2.79221  3.26557     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     24   3.41588  0.13228  3.46607  2.81644     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     25   2.93708  3.57257  0.11883  3.47567     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     26   0.14388  3.36532  2.79221  3.26557     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     27   3.41588  0.13228  3.46607  2.81644     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     28   3.41588  0.13228  3.46607  2.81644     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     29   3.41588  0.13228  3.46607  2.81644     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     30   2.93708  3.57257  0.11883  3.47567     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     31   3.41588  0.13228  3.46607  2.81644     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     32   3.07355  2.58556  3.12228  0.18112     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     33   2.93708  3.57257  0.11883  3.47567     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     34   0.14388  3.36532  2.79221  3.26557     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     35   0.14388  3.36532  2.79221  3.26557     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     36   3.41588  0.13228  3.46607  2.81644     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     37   3.07355  2.58556  3.12228  0.18112     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     38   3.07355  2.58556  3.12228  0.18112     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     39   0.14388  3.36532  2.79221  3.26557     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     40   0.14388  3.36532  2.79221  3.26557     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     41   2.93708  3.57257  0.11883  3.47567     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     42   3.41588  0.13228  3.46607  2.81644     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     43   0.14388  3.36532  2.79221  3.26557     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     44   3.07355  2.58556  3.12228  0.18112     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
     45   0.14388  3.36532  2.79221  3.26557     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01878  3.98460        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhodophyta_4_LSU_start_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 22:09:23 2012
NSEQ  10
EFFN  3.305664
CKSUM 3245122891
STATS LOCAL MSV       -8.3526  0.71932
STATS LOCAL VITERBI   -7.6782  0.71932
STATS LOCAL FORWARD   -3.9655  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.11041  1.53680  1.60255  1.36992
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  0.00000        *
      1   3.08310  2.59163  3.13146  0.17957      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      2   3.08310  2.59163  3.13146  0.17957      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      3   3.08310  2.59163  3.13146  0.17957      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      4   2.94371  3.58221  0.11777  3.48630      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      5   2.94371  3.58221  0.11777  3.48630      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      6   0.14262  3.37480  2.79837  3.27595      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      7   3.08310  2.59163  3.13146  0.17957      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      8   3.42681  0.13096  3.47654  2.82441      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      9   3.08310  2.59163  3.13146  0.17957      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     10   3.42681  0.13096  3.47654  2.82441     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     11   0.14262  3.37480  2.79837  3.27595     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     12   0.14262  3.37480  2.79837  3.27595     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     13   0.14262  3.37480  2.79837  3.27595     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     14   3.08310  2.59163  3.13146  0.17957     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     15   3.42681  0.13096  3.47654  2.82441     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     16   0.14262  3.37480  2.79837  3.27595     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     17   2.94371  3.58221  0.11777  3.48630     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     18   0.14262  3.37480  2.79837  3.27595     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     19   3.42681  0.13096  3.47654  2.82441     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     20   0.14262  3.37480  2.79837  3.27595     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     21   0.14262  3.37480  2.79837  3.27595     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     22   2.94371  3.58221  0.11777  3.48630     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     23   0.14262  3.37480  2.79837  3.27595     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     24   3.08310  2.59163  3.13146  0.17957     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     25   2.94371  3.58221  0.11777  3.48630     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     26   0.14262  3.37480  2.79837  3.27595     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     27   3.42681  0.13096  3.47654  2.82441     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     28   3.42681  0.13096  3.47654  2.82441     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     29   3.42681  0.13096  3.47654  2.82441     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     30   2.94371  3.58221  0.11777  3.48630     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     31   3.42681  0.13096  3.47654  2.82441     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     32   3.08310  2.59163  3.13146  0.17957     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     33   2.94371  3.58221  0.11777  3.48630     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     34   0.14262  3.37480  2.79837  3.27595     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     35   0.14262  3.37480  2.79837  3.27595     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     36   3.08310  2.59163  3.13146  0.17957     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     37   3.08310  2.59163  3.13146  0.17957     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     38   3.08310  2.59163  3.13146  0.17957     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     39   0.14262  3.37480  2.79837  3.27595     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     40   0.14262  3.37480  2.79837  3.27595     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     41   2.94371  3.58221  0.11777  3.48630     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     42   3.42681  0.13096  3.47654  2.82441     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     43   0.14262  3.37480  2.79837  3.27595     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     44   3.08310  2.59163  3.13146  0.17957     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     45   0.14262  3.37480  2.79837  3.27595     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01867  3.99003        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhodophyta_4_LSU_start_six_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 22:10:12 2012
NSEQ  10
EFFN  3.305664
CKSUM 3245122891
STATS LOCAL MSV       -8.3526  0.71932
STATS LOCAL VITERBI   -7.6782  0.71932
STATS LOCAL FORWARD   -3.9655  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.11041  1.53680  1.60255  1.36992
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  0.00000        *
      1   3.08310  2.59163  3.13146  0.17957      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      2   3.08310  2.59163  3.13146  0.17957      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      3   3.08310  2.59163  3.13146  0.17957      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      4   2.94371  3.58221  0.11777  3.48630      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      5   2.94371  3.58221  0.11777  3.48630      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      6   0.14262  3.37480  2.79837  3.27595      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      7   3.08310  2.59163  3.13146  0.17957      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      8   3.42681  0.13096  3.47654  2.82441      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      9   3.08310  2.59163  3.13146  0.17957      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     10   3.42681  0.13096  3.47654  2.82441     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     11   0.14262  3.37480  2.79837  3.27595     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     12   0.14262  3.37480  2.79837  3.27595     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     13   0.14262  3.37480  2.79837  3.27595     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     14   3.08310  2.59163  3.13146  0.17957     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     15   3.42681  0.13096  3.47654  2.82441     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     16   0.14262  3.37480  2.79837  3.27595     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     17   2.94371  3.58221  0.11777  3.48630     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     18   0.14262  3.37480  2.79837  3.27595     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     19   3.42681  0.13096  3.47654  2.82441     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     20   0.14262  3.37480  2.79837  3.27595     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     21   0.14262  3.37480  2.79837  3.27595     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     22   2.94371  3.58221  0.11777  3.48630     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     23   0.14262  3.37480  2.79837  3.27595     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     24   3.08310  2.59163  3.13146  0.17957     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     25   2.94371  3.58221  0.11777  3.48630     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     26   0.14262  3.37480  2.79837  3.27595     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     27   3.42681  0.13096  3.47654  2.82441     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     28   3.42681  0.13096  3.47654  2.82441     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     29   3.42681  0.13096  3.47654  2.82441     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     30   2.94371  3.58221  0.11777  3.48630     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     31   3.42681  0.13096  3.47654  2.82441     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     32   3.08310  2.59163  3.13146  0.17957     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     33   2.94371  3.58221  0.11777  3.48630     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     34   0.14262  3.37480  2.79837  3.27595     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     35   0.14262  3.37480  2.79837  3.27595     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     36   3.08310  2.59163  3.13146  0.17957     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     37   3.08310  2.59163  3.13146  0.17957     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     38   3.08310  2.59163  3.13146  0.17957     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     39   0.14262  3.37480  2.79837  3.27595     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     40   0.14262  3.37480  2.79837  3.27595     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     41   2.94371  3.58221  0.11777  3.48630     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     42   3.42681  0.13096  3.47654  2.82441     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     43   0.14262  3.37480  2.79837  3.27595     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     44   3.08310  2.59163  3.13146  0.17957     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     45   0.14262  3.37480  2.79837  3.27595     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01867  3.99003        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhodophyta_4_LSU_start_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 22:09:39 2012
NSEQ  3
EFFN  3.000000
CKSUM 2901651986
STATS LOCAL MSV       -8.1984  0.72045
STATS LOCAL VITERBI   -7.6948  0.72045
STATS LOCAL FORWARD   -3.8288  0.72045
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.11685  1.46208  1.59584  1.43465
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   0.15719  3.27118  2.73043  3.16274     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhodophyta_4_LSU_start_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 22:09:31 2012
NSEQ  3
EFFN  3.000000
CKSUM 1115734847
STATS LOCAL MSV       -8.1731  0.72021
STATS LOCAL VITERBI   -7.6315  0.72021
STATS LOCAL FORWARD   -3.7687  0.72021
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.11609  1.47103  1.43683  1.58438
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   0.15719  3.27118  2.73043  3.16274     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Rhodophyta_1_SSU_end_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 21:06:17 2012
NSEQ  95
EFFN  3.348541
CKSUM 2011377772
STATS LOCAL MSV       -7.9892  0.71931
STATS LOCAL VITERBI   -7.7135  0.71931
STATS LOCAL FORWARD   -4.1047  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.32905  1.53799  1.25544  1.44601
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  0.00000        *
      1   0.14081  3.38851  2.80728  3.29095      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
      2   2.95327  3.59611  0.11625  3.50165      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
      3   3.09694  2.60044  3.14477  0.17734      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
      4   3.44261  0.12908  3.49166  2.83591      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
      5   2.95327  3.59611  0.11625  3.50165      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
      6   3.09694  2.60044  3.14477  0.17734      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
      7   0.14081  3.38851  2.80728  3.29095      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
      8   0.14081  3.38851  2.80728  3.29095      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
      9   3.44261  0.12908  3.49166  2.83591      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     10   0.14081  3.38851  2.80728  3.29095     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     11   0.14081  3.38851  2.80728  3.29095     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     12   2.95327  3.59611  0.11625  3.50165     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     13   2.95327  3.59611  0.11625  3.50165     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.09712  4.01612  2.59653  1.46634  0.26236  1.09861  0.40547
     14   2.64581  2.38647  2.37397  0.29573     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03895  3.95795  3.95795  1.46634  0.26236  0.39449  1.12093
     15   3.09694  2.60044  3.14477  0.17734     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     16   3.09694  2.60044  3.14477  0.17734     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     17   3.44261  0.12908  3.49166  2.83591     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     18   3.44261  0.12908  3.49166  2.83591     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     19   2.95327  3.59611  0.11625  3.50165     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     20   3.09694  2.60044  3.14477  0.17734     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     21   0.14081  3.38851  2.80728  3.29095     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     22   2.95327  3.59611  0.11625  3.50165     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     23   2.95327  3.59611  0.11625  3.50165     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     24   3.09694  2.60044  3.14477  0.17734     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     25   2.95327  3.59611  0.11625  3.50165     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     26   0.14081  3.38851  2.80728  3.29095     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     27   0.14081  3.38851  2.80728  3.29095     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     28   3.44261  0.12908  3.49166  2.83591     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     29   3.44261  0.12908  3.49166  2.83591     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     30   3.09694  2.60044  3.14477  0.17734     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     31   2.49053  2.77369  0.31322  2.09058     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     32   3.44261  0.12908  3.49166  2.83591     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     33   2.95327  3.59611  0.11625  3.50165     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     34   2.95327  3.59611  0.11625  3.50165     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     35   0.14081  3.38851  2.80728  3.29095     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     36   0.14081  3.38851  2.80728  3.29095     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     37   2.95327  3.59611  0.11625  3.50165     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     38   2.95327  3.59611  0.11625  3.50165     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     39   0.14081  3.38851  2.80728  3.29095     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     40   3.09694  2.60044  3.14477  0.17734     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     41   3.44261  0.12908  3.49166  2.83591     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     42   0.14081  3.38851  2.80728  3.29095     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     43   3.09694  2.60044  3.14477  0.17734     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     44   3.09694  2.60044  3.14477  0.17734     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
     45   3.44261  0.12908  3.49166  2.83591     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01852  3.99793        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Rhodophyta_58S_end_seven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Nov 16 22:26:26 2012
NSEQ  17
EFFN  3.258057
CKSUM 99854956
STATS LOCAL MSV       -7.9161  0.71933
STATS LOCAL VITERBI   -7.6864  0.71933
STATS LOCAL FORWARD   -4.2261  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82088  1.31276  1.14101  1.38812
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  0.00000        *
      1   2.93288  3.56649  0.11951  3.46896      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
      2   3.40899  0.13312  3.45947  2.81141      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
      3   2.93288  3.56649  0.11951  3.46896      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
      4   3.40899  0.13312  3.45947  2.81141      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
      5   3.06755  2.58173  3.11650  0.18211      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
      6   3.40899  0.13312  3.45947  2.81141      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
      7   2.93288  3.56649  0.11951  3.46896      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
      8   3.40899  0.13312  3.45947  2.81141      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
      9   2.93288  3.56649  0.11951  3.46896      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     10   2.93288  3.56649  0.11951  3.46896     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     11   2.93288  3.56649  0.11951  3.46896     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     12   3.06755  2.58173  3.11650  0.18211     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     13   0.14469  3.35935  2.78832  3.25904     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     14   0.14469  3.35935  2.78832  3.25904     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     15   3.40899  0.13312  3.45947  2.81141     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     16   3.40899  0.13312  3.45947  2.81141     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     17   3.40899  0.13312  3.45947  2.81141     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     18   3.06755  2.58173  3.11650  0.18211     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     19   2.93288  3.56649  0.11951  3.46896     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     20   3.40899  0.13312  3.45947  2.81141     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     21   2.93288  3.56649  0.11951  3.46896     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     22   0.14469  3.35935  2.78832  3.25904     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     23   2.93288  3.56649  0.11951  3.46896     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     24   3.40899  0.13312  3.45947  2.81141     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     25   0.14469  3.35935  2.78832  3.25904     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     26   3.06755  2.58173  3.11650  0.18211     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     27   2.93288  3.56649  0.11951  3.46896     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     28   3.06755  2.58173  3.11650  0.18211     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     29   3.40899  0.13312  3.45947  2.81141     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     30   3.06755  2.58173  3.11650  0.18211     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     31   2.93288  3.56649  0.11951  3.46896     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     32   3.06755  2.58173  3.11650  0.18211     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     33   3.06755  2.58173  3.11650  0.18211     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     34   3.06755  2.58173  3.11650  0.18211     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     35   2.93288  3.56649  0.11951  3.46896     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     36   0.14469  3.35935  2.78832  3.25904     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     37   2.93288  3.56649  0.11951  3.46896     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     38   2.60196  1.60547  2.66720  0.42216     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     39   2.93288  3.56649  0.11951  3.46896     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     40   3.06755  2.58173  3.11650  0.18211     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     41   3.40899  0.13312  3.45947  2.81141     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     42   3.40899  0.13312  3.45947  2.81141     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     43   2.93288  3.56649  0.11951  3.46896     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     44   3.06755  2.58173  3.11650  0.18211     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
     45   0.14469  3.35935  2.78832  3.25904     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01884  3.98119        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Rhodophyta_58S_end_five_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Nov 16 22:25:48 2012
NSEQ  7
EFFN  3.305176
CKSUM 4199574871
STATS LOCAL MSV       -8.1908  0.71932
STATS LOCAL VITERBI   -7.8570  0.71932
STATS LOCAL FORWARD   -4.1151  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92875  1.60184  1.14085  1.09782
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  0.00000        *
      1   2.94360  3.58205  0.11779  3.48613      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
      2   3.42663  0.13098  3.47636  2.82428      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
      3   3.08294  2.59153  3.13131  0.17959      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
      4   3.42663  0.13098  3.47636  2.82428      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
      5   0.14264  3.37464  2.79827  3.27577      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
      6   3.08294  2.59153  3.13131  0.17959      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
      7   2.94360  3.58205  0.11779  3.48613      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
      8   3.08294  2.59153  3.13131  0.17959      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
      9   3.42663  0.13098  3.47636  2.82428      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     10   3.42663  0.13098  3.47636  2.82428     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     11   2.94360  3.58205  0.11779  3.48613     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     12   2.94360  3.58205  0.11779  3.48613     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     13   2.94360  3.58205  0.11779  3.48613     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     14   3.08294  2.59153  3.13131  0.17959     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     15   2.94360  3.58205  0.11779  3.48613     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     16   2.94360  3.58205  0.11779  3.48613     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     17   0.14264  3.37464  2.79827  3.27577     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     18   3.08294  2.59153  3.13131  0.17959     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     19   2.94360  3.58205  0.11779  3.48613     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     20   3.08294  2.59153  3.13131  0.17959     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     21   2.94360  3.58205  0.11779  3.48613     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     22   0.14264  3.37464  2.79827  3.27577     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     23   2.94360  3.58205  0.11779  3.48613     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     24   3.42663  0.13098  3.47636  2.82428     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     25   0.14264  3.37464  2.79827  3.27577     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     26   3.08294  2.59153  3.13131  0.17959     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     27   2.94360  3.58205  0.11779  3.48613     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     28   3.42663  0.13098  3.47636  2.82428     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     29   3.42663  0.13098  3.47636  2.82428     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     30   3.08294  2.59153  3.13131  0.17959     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     31   2.94360  3.58205  0.11779  3.48613     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     32   3.08294  2.59153  3.13131  0.17959     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     33   3.08294  2.59153  3.13131  0.17959     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     34   3.08294  2.59153  3.13131  0.17959     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     35   2.94360  3.58205  0.11779  3.48613     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     36   0.14264  3.37464  2.79827  3.27577     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     37   2.94360  3.58205  0.11779  3.48613     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     38   3.08294  2.59153  3.13131  0.17959     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     39   2.94360  3.58205  0.11779  3.48613     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     40   3.08294  2.59153  3.13131  0.17959     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     41   3.42663  0.13098  3.47636  2.82428     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     42   3.08294  2.59153  3.13131  0.17959     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     43   3.08294  2.59153  3.13131  0.17959     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     44   3.08294  2.59153  3.13131  0.17959     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     45   3.08294  2.59153  3.13131  0.17959     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01867  3.98994        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Rhodophyta_58S_end_six_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Nov 16 22:25:59 2012
NSEQ  7
EFFN  3.264160
CKSUM 2681386467
STATS LOCAL MSV       -7.8266  0.71931
STATS LOCAL VITERBI   -7.7527  0.71931
STATS LOCAL FORWARD   -4.1975  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72557  1.38143  1.25532  1.25273
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  0.00000        *
      1   2.93428  3.56852  0.11929  3.47120      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      2   3.41129  0.13284  3.46167  2.81309      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      3   2.93428  3.56852  0.11929  3.47120      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      4   3.41129  0.13284  3.46167  2.81309      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      5   3.06955  2.58301  3.11843  0.18178      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      6   3.41129  0.13284  3.46167  2.81309      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      7   3.06955  2.58301  3.11843  0.18178      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      8   3.41129  0.13284  3.46167  2.81309      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      9   2.93428  3.56852  0.11929  3.47120      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     10   2.93428  3.56852  0.11929  3.47120     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     11   2.93428  3.56852  0.11929  3.47120     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     12   3.06955  2.58301  3.11843  0.18178     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     13   0.14442  3.36134  2.78962  3.26122     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     14   0.14442  3.36134  2.78962  3.26122     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     15   3.41129  0.13284  3.46167  2.81309     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     16   3.41129  0.13284  3.46167  2.81309     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     17   3.41129  0.13284  3.46167  2.81309     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     18   3.06955  2.58301  3.11843  0.18178     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     19   2.93428  3.56852  0.11929  3.47120     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     20   0.14442  3.36134  2.78962  3.26122     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     21   2.93428  3.56852  0.11929  3.47120     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     22   0.14442  3.36134  2.78962  3.26122     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     23   2.93428  3.56852  0.11929  3.47120     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     24   3.41129  0.13284  3.46167  2.81309     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     25   0.14442  3.36134  2.78962  3.26122     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     26   3.06955  2.58301  3.11843  0.18178     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     27   2.93428  3.56852  0.11929  3.47120     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     28   3.06955  2.58301  3.11843  0.18178     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     29   3.41129  0.13284  3.46167  2.81309     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     30   3.06955  2.58301  3.11843  0.18178     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     31   2.93428  3.56852  0.11929  3.47120     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     32   3.06955  2.58301  3.11843  0.18178     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     33   3.06955  2.58301  3.11843  0.18178     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     34   3.06955  2.58301  3.11843  0.18178     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     35   2.93428  3.56852  0.11929  3.47120     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     36   0.14442  3.36134  2.78962  3.26122     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     37   2.93428  3.56852  0.11929  3.47120     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     38   3.06955  2.58301  3.11843  0.18178     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     39   2.93428  3.56852  0.11929  3.47120     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     40   3.06955  2.58301  3.11843  0.18178     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     41   3.41129  0.13284  3.46167  2.81309     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     42   0.14442  3.36134  2.78962  3.26122     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     43   3.41129  0.13284  3.46167  2.81309     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     44   3.06955  2.58301  3.11843  0.18178     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     45   3.06955  2.58301  3.11843  0.18178     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01882  3.98232        *  1.46634  0.26236  0.00000        *
//