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view ITSx_db/HMMs/O.hmm @ 2:7c914d783d36 draft
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| author | okorol |
|---|---|
| date | Tue, 24 Mar 2015 16:47:42 -0400 |
| parents | f82c70f54bd7 |
| children |
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HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_eight_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:03:14 2012 NSEQ 2983 EFFN 3.376790 CKSUM 630809808 STATS LOCAL MSV -7.3235 0.71932 STATS LOCAL VITERBI -7.7268 0.71932 STATS LOCAL FORWARD -3.9994 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.71234 1.37658 1.27028 1.25049 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 0.00000 * 1 3.45287 0.12788 3.50149 2.84336 1 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 2 0.13965 3.39742 2.81306 3.30071 2 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 3 3.45287 0.12788 3.50149 2.84336 3 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 4 3.10596 2.60617 3.15345 0.17590 4 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 5 3.07064 2.51740 3.11930 0.18784 5 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 6 3.40266 0.13843 3.45273 2.74368 6 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 7 3.45287 0.12788 3.50149 2.84336 7 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 8 2.95946 3.60514 0.11528 3.51162 8 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 9 2.95946 3.60514 0.11528 3.51162 9 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 10 2.95946 3.60514 0.11528 3.51162 10 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 11 3.07576 2.52995 3.12424 0.18607 11 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 12 3.10596 2.60617 3.15345 0.17590 12 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 13 0.13965 3.39742 2.81306 3.30071 13 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 14 2.95946 3.60514 0.11528 3.51162 14 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 15 3.01261 2.38100 3.06343 0.20868 15 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 16 3.45287 0.12788 3.50149 2.84336 16 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 17 3.45287 0.12788 3.50149 2.84336 17 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 18 3.10596 2.60617 3.15345 0.17590 18 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 19 2.95946 3.60514 0.11528 3.51162 19 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 20 2.95946 3.60514 0.11528 3.51162 20 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 21 1.77028 2.90399 0.33921 2.77137 21 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 22 0.13965 3.39742 2.81306 3.30071 22 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 23 2.95946 3.60514 0.11528 3.51162 23 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 24 3.10596 2.60617 3.15345 0.17590 24 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 25 0.13965 3.39742 2.81306 3.30071 25 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 26 3.10596 2.60617 3.15345 0.17590 26 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 27 2.95946 3.60514 0.11528 3.51162 27 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 28 3.45287 0.12788 3.50149 2.84336 28 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 29 3.45287 0.12788 3.50149 2.84336 29 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 30 3.10596 2.60617 3.15345 0.17590 30 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 31 2.95946 3.60514 0.11528 3.51162 31 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 32 3.10596 2.60617 3.15345 0.17590 32 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 33 0.13965 3.39742 2.81306 3.30071 33 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 34 3.10596 2.60617 3.15345 0.17590 34 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 35 3.45287 0.12788 3.50149 2.84336 35 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 36 0.13965 3.39742 2.81306 3.30071 36 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 37 2.95946 3.60514 0.11528 3.51162 37 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 38 3.10596 2.60617 3.15345 0.17590 38 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 39 2.95946 3.60514 0.11528 3.51162 39 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 40 3.10596 2.60617 3.15345 0.17590 40 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 41 3.45287 0.12788 3.50149 2.84336 41 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 42 3.40764 0.13736 3.45755 2.75327 42 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 43 2.95946 3.60514 0.11528 3.51162 43 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 44 3.10596 2.60617 3.15345 0.17590 44 - - 1.38629 1.38629 1.38629 1.38629 0.03652 4.02119 4.02119 1.46634 0.26236 1.09861 0.40547 45 0.13965 3.39742 2.81306 3.30071 45 - - 1.38629 1.38629 1.38629 1.38629 0.01843 4.00310 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_eighteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:05:17 2012 NSEQ 66 EFFN 3.387817 CKSUM 3936920601 STATS LOCAL MSV -7.3341 0.71931 STATS LOCAL VITERBI -7.7613 0.71931 STATS LOCAL FORWARD -4.0489 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72377 1.45753 1.31845 1.13554 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 0.00000 * 1 3.45687 0.12741 3.50531 2.84626 1 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 2 0.13920 3.40089 2.81531 3.30452 2 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 3 3.45687 0.12741 3.50531 2.84626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 4 3.10948 2.60841 3.15684 0.17535 4 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 5 3.10948 2.60841 3.15684 0.17535 5 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 6 3.10948 2.60841 3.15684 0.17535 6 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 7 3.45687 0.12741 3.50531 2.84626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 8 2.96186 3.60865 0.11490 3.51549 8 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 9 2.96186 3.60865 0.11490 3.51549 9 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 10 2.96186 3.60865 0.11490 3.51549 10 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 11 3.10948 2.60841 3.15684 0.17535 11 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 12 3.10948 2.60841 3.15684 0.17535 12 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 13 2.85130 0.31564 2.91699 1.84004 13 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 14 3.10948 2.60841 3.15684 0.17535 14 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 15 2.96186 3.60865 0.11490 3.51549 15 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 16 3.45687 0.12741 3.50531 2.84626 16 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 17 3.45687 0.12741 3.50531 2.84626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 18 3.10948 2.60841 3.15684 0.17535 18 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 19 2.96186 3.60865 0.11490 3.51549 19 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 20 2.96186 3.60865 0.11490 3.51549 20 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 21 0.13920 3.40089 2.81531 3.30452 21 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 22 0.13920 3.40089 2.81531 3.30452 22 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 23 2.96186 3.60865 0.11490 3.51549 23 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 24 3.10948 2.60841 3.15684 0.17535 24 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 25 0.13920 3.40089 2.81531 3.30452 25 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 26 3.10948 2.60841 3.15684 0.17535 26 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 27 2.96186 3.60865 0.11490 3.51549 27 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 28 3.10948 2.60841 3.15684 0.17535 28 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 29 3.45687 0.12741 3.50531 2.84626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 30 3.10948 2.60841 3.15684 0.17535 30 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 31 2.96186 3.60865 0.11490 3.51549 31 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 32 3.10948 2.60841 3.15684 0.17535 32 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 33 0.13920 3.40089 2.81531 3.30452 33 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 34 3.10948 2.60841 3.15684 0.17535 34 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 35 3.45687 0.12741 3.50531 2.84626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 36 0.13920 3.40089 2.81531 3.30452 36 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 37 2.96186 3.60865 0.11490 3.51549 37 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 38 3.10948 2.60841 3.15684 0.17535 38 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 39 2.96186 3.60865 0.11490 3.51549 39 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 40 3.10948 2.60841 3.15684 0.17535 40 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 41 3.45687 0.12741 3.50531 2.84626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 42 3.45687 0.12741 3.50531 2.84626 42 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 43 2.96186 3.60865 0.11490 3.51549 43 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 44 3.10948 2.60841 3.15684 0.17535 44 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02317 4.02317 1.46634 0.26236 1.09861 0.40547 45 0.13920 3.40089 2.81531 3.30452 45 - - 1.38629 1.38629 1.38629 1.38629 0.01839 4.00512 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_eleven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:03:45 2012 NSEQ 5 EFFN 3.286133 CKSUM 3431982012 STATS LOCAL MSV -8.0387 0.71931 STATS LOCAL VITERBI -7.7022 0.71931 STATS LOCAL FORWARD -3.9965 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72267 1.44764 1.25731 1.19776 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 0.00000 * 1 3.41954 0.13184 3.46957 2.81911 1 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 2 0.14346 3.36849 2.79427 3.26904 2 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 3 3.41954 0.13184 3.46957 2.81911 3 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 4 3.07674 2.58759 3.12535 0.18060 4 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 5 3.07674 2.58759 3.12535 0.18060 5 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 6 3.41954 0.13184 3.46957 2.81911 6 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 7 3.41954 0.13184 3.46957 2.81911 7 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 8 2.93930 3.57580 0.11848 3.47923 8 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 9 2.93930 3.57580 0.11848 3.47923 9 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 10 2.93930 3.57580 0.11848 3.47923 10 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 11 3.07674 2.58759 3.12535 0.18060 11 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 12 3.07674 2.58759 3.12535 0.18060 12 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 13 0.14346 3.36849 2.79427 3.26904 13 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 14 3.07674 2.58759 3.12535 0.18060 14 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 15 2.93930 3.57580 0.11848 3.47923 15 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 16 3.41954 0.13184 3.46957 2.81911 16 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 17 3.41954 0.13184 3.46957 2.81911 17 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 18 3.07674 2.58759 3.12535 0.18060 18 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 19 2.93930 3.57580 0.11848 3.47923 19 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 20 2.93930 3.57580 0.11848 3.47923 20 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 21 2.93930 3.57580 0.11848 3.47923 21 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 22 0.14346 3.36849 2.79427 3.26904 22 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 23 2.93930 3.57580 0.11848 3.47923 23 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 24 3.07674 2.58759 3.12535 0.18060 24 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 25 0.14346 3.36849 2.79427 3.26904 25 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 26 3.07674 2.58759 3.12535 0.18060 26 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 27 2.93930 3.57580 0.11848 3.47923 27 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 28 3.07674 2.58759 3.12535 0.18060 28 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 29 3.41954 0.13184 3.46957 2.81911 29 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 30 3.07674 2.58759 3.12535 0.18060 30 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 31 2.93930 3.57580 0.11848 3.47923 31 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 32 3.07674 2.58759 3.12535 0.18060 32 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 33 0.14346 3.36849 2.79427 3.26904 33 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 34 3.07674 2.58759 3.12535 0.18060 34 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 35 3.41954 0.13184 3.46957 2.81911 35 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 36 0.14346 3.36849 2.79427 3.26904 36 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 37 2.93930 3.57580 0.11848 3.47923 37 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 38 3.07674 2.58759 3.12535 0.18060 38 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 39 2.93930 3.57580 0.11848 3.47923 39 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 40 3.07674 2.58759 3.12535 0.18060 40 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 41 3.41954 0.13184 3.46957 2.81911 41 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 42 3.41954 0.13184 3.46957 2.81911 42 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 43 2.93930 3.57580 0.11848 3.47923 43 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 44 3.07674 2.58759 3.12535 0.18060 44 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 45 0.14346 3.36849 2.79427 3.26904 45 - - 1.38629 1.38629 1.38629 1.38629 0.01874 3.98641 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_fifteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:04:33 2012 NSEQ 2 EFFN 2.000000 CKSUM 3914797017 STATS LOCAL MSV -7.4374 0.72820 STATS LOCAL VITERBI -8.4197 0.72820 STATS LOCAL FORWARD -3.4238 0.72820 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.66221 1.33035 1.32438 1.27323 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_fifty_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:11:28 2012 NSEQ 2 EFFN 2.000000 CKSUM 967929854 STATS LOCAL MSV -7.3485 0.72825 STATS LOCAL VITERBI -8.2404 0.72825 STATS LOCAL FORWARD -3.4311 0.72825 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.52311 1.27981 1.44171 1.31919 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_fiftyone_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:11:37 2012 NSEQ 7 EFFN 3.264160 CKSUM 713685856 STATS LOCAL MSV -8.1498 0.71932 STATS LOCAL VITERBI -7.7201 0.71932 STATS LOCAL FORWARD -4.3295 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.55404 1.31478 1.38653 1.30885 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 0.00000 * 1 3.41129 0.13284 3.46167 2.81309 1 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 2 3.41129 0.13284 3.46167 2.81309 2 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 3 0.14442 3.36134 2.78962 3.26122 3 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 4 3.41129 0.13284 3.46167 2.81309 4 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 5 3.41129 0.13284 3.46167 2.81309 5 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 6 3.06955 2.58301 3.11843 0.18178 6 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 7 0.14442 3.36134 2.78962 3.26122 7 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 8 3.06955 2.58301 3.11843 0.18178 8 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 9 2.93428 3.56852 0.11929 3.47120 9 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 10 3.41129 0.13284 3.46167 2.81309 10 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 11 3.06955 2.58301 3.11843 0.18178 11 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 12 0.14442 3.36134 2.78962 3.26122 12 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 13 3.41129 0.13284 3.46167 2.81309 13 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 14 2.93428 3.56852 0.11929 3.47120 14 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 15 3.41129 0.13284 3.46167 2.81309 15 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 16 3.06955 2.58301 3.11843 0.18178 16 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 17 0.14442 3.36134 2.78962 3.26122 17 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 18 3.06955 2.58301 3.11843 0.18178 18 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 19 2.93428 3.56852 0.11929 3.47120 19 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 20 2.93428 3.56852 0.11929 3.47120 20 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 21 0.14442 3.36134 2.78962 3.26122 21 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 22 2.93428 3.56852 0.11929 3.47120 22 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 23 2.93428 3.56852 0.11929 3.47120 23 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 24 3.06955 2.58301 3.11843 0.18178 24 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 25 0.14442 3.36134 2.78962 3.26122 25 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 26 3.06955 2.58301 3.11843 0.18178 26 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 27 2.93428 3.56852 0.11929 3.47120 27 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 28 3.41129 0.13284 3.46167 2.81309 28 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 29 3.41129 0.13284 3.46167 2.81309 29 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 30 3.06955 2.58301 3.11843 0.18178 30 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 31 2.93428 3.56852 0.11929 3.47120 31 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 32 3.06955 2.58301 3.11843 0.18178 32 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 33 2.93428 3.56852 0.11929 3.47120 33 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 34 3.06955 2.58301 3.11843 0.18178 34 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 35 3.41129 0.13284 3.46167 2.81309 35 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 36 0.14442 3.36134 2.78962 3.26122 36 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 37 2.93428 3.56852 0.11929 3.47120 37 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 38 3.06955 2.58301 3.11843 0.18178 38 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 39 2.93428 3.56852 0.11929 3.47120 39 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 40 3.06955 2.58301 3.11843 0.18178 40 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 41 3.06955 2.58301 3.11843 0.18178 41 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 42 3.41129 0.13284 3.46167 2.81309 42 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 43 3.41129 0.13284 3.46167 2.81309 43 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 44 0.14442 3.36134 2.78962 3.26122 44 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 45 0.14442 3.36134 2.78962 3.26122 45 - - 1.38629 1.38629 1.38629 1.38629 0.01882 3.98232 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:02:23 2012 NSEQ 2 EFFN 2.000000 CKSUM 1892825005 STATS LOCAL MSV -7.2444 0.72835 STATS LOCAL VITERBI -8.3433 0.72835 STATS LOCAL FORWARD -3.3819 0.72835 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.73627 1.44157 1.26874 1.18390 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.53331 3.02441 0.20344 2.88069 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_fortyeight_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:11:04 2012 NSEQ 7 EFFN 3.346191 CKSUM 1450221519 STATS LOCAL MSV -8.1812 0.71933 STATS LOCAL VITERBI -7.6059 0.71933 STATS LOCAL FORWARD -4.2073 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.47372 1.37170 1.38114 1.32441 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 0.00000 * 1 3.09618 2.59996 3.14405 0.17746 1 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 2 0.14091 3.38776 2.80679 3.29014 2 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 3 3.44175 0.12918 3.49084 2.83528 3 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 4 3.44175 0.12918 3.49084 2.83528 4 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 5 2.95275 3.59536 0.11633 3.50082 5 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 6 2.95275 3.59536 0.11633 3.50082 6 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 7 2.95275 3.59536 0.11633 3.50082 7 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 8 2.95275 3.59536 0.11633 3.50082 8 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 9 3.44175 0.12918 3.49084 2.83528 9 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 10 3.09618 2.59996 3.14405 0.17746 10 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 11 0.14091 3.38776 2.80679 3.29014 11 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 12 2.95275 3.59536 0.11633 3.50082 12 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 13 0.14091 3.38776 2.80679 3.29014 13 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 14 3.09618 2.59996 3.14405 0.17746 14 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 15 3.44175 0.12918 3.49084 2.83528 15 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 16 3.09618 2.59996 3.14405 0.17746 16 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 17 3.09618 2.59996 3.14405 0.17746 17 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 18 3.44175 0.12918 3.49084 2.83528 18 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 19 2.95275 3.59536 0.11633 3.50082 19 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 20 2.95275 3.59536 0.11633 3.50082 20 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 21 0.14091 3.38776 2.80679 3.29014 21 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 22 0.14091 3.38776 2.80679 3.29014 22 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 23 2.95275 3.59536 0.11633 3.50082 23 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 24 3.09618 2.59996 3.14405 0.17746 24 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 25 0.14091 3.38776 2.80679 3.29014 25 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 26 3.09618 2.59996 3.14405 0.17746 26 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 27 2.95275 3.59536 0.11633 3.50082 27 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 28 3.44175 0.12918 3.49084 2.83528 28 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 29 3.44175 0.12918 3.49084 2.83528 29 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 30 3.09618 2.59996 3.14405 0.17746 30 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 31 3.44175 0.12918 3.49084 2.83528 31 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 32 3.09618 2.59996 3.14405 0.17746 32 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 33 0.14091 3.38776 2.80679 3.29014 33 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 34 3.09618 2.59996 3.14405 0.17746 34 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 35 3.44175 0.12918 3.49084 2.83528 35 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 36 0.14091 3.38776 2.80679 3.29014 36 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 37 2.95275 3.59536 0.11633 3.50082 37 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 38 3.09618 2.59996 3.14405 0.17746 38 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 39 2.95275 3.59536 0.11633 3.50082 39 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 40 3.09618 2.59996 3.14405 0.17746 40 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 41 3.44175 0.12918 3.49084 2.83528 41 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 42 3.44175 0.12918 3.49084 2.83528 42 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 43 0.14091 3.38776 2.80679 3.29014 43 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 44 2.55815 1.47151 2.62502 0.47717 44 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01570 4.01570 1.46634 0.26236 1.09861 0.40547 45 0.14091 3.38776 2.80679 3.29014 45 - - 1.38629 1.38629 1.38629 1.38629 0.01853 3.99750 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_fortyfive_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:10:31 2012 NSEQ 32 EFFN 3.292969 CKSUM 950115204 STATS LOCAL MSV -8.1199 0.71933 STATS LOCAL VITERBI -7.9534 0.71933 STATS LOCAL FORWARD -3.9017 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.64328 1.19125 1.53972 1.24350 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 0.00000 * 1 3.42209 0.13153 3.47201 2.82097 1 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 2 3.07897 2.58901 3.12749 0.18024 2 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 3 3.07897 2.58901 3.12749 0.18024 3 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 4 3.42209 0.13153 3.47201 2.82097 4 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 5 3.07897 2.58901 3.12749 0.18024 5 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 6 3.42209 0.13153 3.47201 2.82097 6 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 7 2.94085 3.57805 0.11823 3.48171 7 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 8 2.94085 3.57805 0.11823 3.48171 8 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 9 2.94085 3.57805 0.11823 3.48171 9 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 10 3.42209 0.13153 3.47201 2.82097 10 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 11 3.07897 2.58901 3.12749 0.18024 11 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 12 0.14316 3.37070 2.79571 3.27146 12 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 13 2.94085 3.57805 0.11823 3.48171 13 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 14 3.07897 2.58901 3.12749 0.18024 14 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 15 3.42209 0.13153 3.47201 2.82097 15 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 16 3.07897 2.58901 3.12749 0.18024 16 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 17 3.42209 0.13153 3.47201 2.82097 17 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 18 3.42209 0.13153 3.47201 2.82097 18 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 19 3.07897 2.58901 3.12749 0.18024 19 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 20 2.94085 3.57805 0.11823 3.48171 20 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 21 0.14316 3.37070 2.79571 3.27146 21 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 22 0.14316 3.37070 2.79571 3.27146 22 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 23 2.94085 3.57805 0.11823 3.48171 23 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 24 3.07897 2.58901 3.12749 0.18024 24 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 25 0.14316 3.37070 2.79571 3.27146 25 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 26 3.07897 2.58901 3.12749 0.18024 26 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 27 2.94085 3.57805 0.11823 3.48171 27 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 28 3.42209 0.13153 3.47201 2.82097 28 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 29 3.42209 0.13153 3.47201 2.82097 29 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 30 3.07897 2.58901 3.12749 0.18024 30 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 31 3.42209 0.13153 3.47201 2.82097 31 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 32 3.07897 2.58901 3.12749 0.18024 32 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 33 0.14316 3.37070 2.79571 3.27146 33 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 34 3.07897 2.58901 3.12749 0.18024 34 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 35 3.42209 0.13153 3.47201 2.82097 35 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 36 0.14316 3.37070 2.79571 3.27146 36 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 37 2.94085 3.57805 0.11823 3.48171 37 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 38 3.07897 2.58901 3.12749 0.18024 38 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 39 2.94085 3.57805 0.11823 3.48171 39 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 40 3.07897 2.58901 3.12749 0.18024 40 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 41 3.42209 0.13153 3.47201 2.82097 41 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 42 3.42209 0.13153 3.47201 2.82097 42 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 43 0.14316 3.37070 2.79571 3.27146 43 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 44 3.42209 0.13153 3.47201 2.82097 44 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00605 4.00605 1.46634 0.26236 1.09861 0.40547 45 0.14316 3.37070 2.79571 3.27146 45 - - 1.38629 1.38629 1.38629 1.38629 0.01872 3.98768 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_fortyfour_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:10:21 2012 NSEQ 10 EFFN 3.266602 CKSUM 1629254486 STATS LOCAL MSV -8.1952 0.71931 STATS LOCAL VITERBI -7.8219 0.71931 STATS LOCAL FORWARD -3.7929 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.64193 1.19469 1.46172 1.30284 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 0.00000 * 1 3.41221 0.13273 3.46255 2.81376 1 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 2 3.07035 2.58352 3.11920 0.18165 2 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 3 3.07035 2.58352 3.11920 0.18165 3 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 4 3.41221 0.13273 3.46255 2.81376 4 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 5 3.41221 0.13273 3.46255 2.81376 5 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 6 3.07035 2.58352 3.11920 0.18165 6 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 7 2.93484 3.56933 0.11920 3.47210 7 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 8 2.93484 3.56933 0.11920 3.47210 8 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 9 2.93484 3.56933 0.11920 3.47210 9 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 10 3.41221 0.13273 3.46255 2.81376 10 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 11 3.07035 2.58352 3.11920 0.18165 11 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 12 0.14431 3.36214 2.79014 3.26209 12 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 13 2.93484 3.56933 0.11920 3.47210 13 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 14 3.07035 2.58352 3.11920 0.18165 14 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 15 3.41221 0.13273 3.46255 2.81376 15 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 16 3.07035 2.58352 3.11920 0.18165 16 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 17 3.41221 0.13273 3.46255 2.81376 17 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 18 3.41221 0.13273 3.46255 2.81376 18 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 19 2.93484 3.56933 0.11920 3.47210 19 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 20 2.93484 3.56933 0.11920 3.47210 20 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 21 0.14431 3.36214 2.79014 3.26209 21 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 22 0.14431 3.36214 2.79014 3.26209 22 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 23 2.93484 3.56933 0.11920 3.47210 23 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 24 3.07035 2.58352 3.11920 0.18165 24 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 25 0.14431 3.36214 2.79014 3.26209 25 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 26 3.07035 2.58352 3.11920 0.18165 26 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 27 2.93484 3.56933 0.11920 3.47210 27 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 28 3.41221 0.13273 3.46255 2.81376 28 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 29 3.41221 0.13273 3.46255 2.81376 29 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 30 3.07035 2.58352 3.11920 0.18165 30 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 31 3.41221 0.13273 3.46255 2.81376 31 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 32 3.07035 2.58352 3.11920 0.18165 32 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 33 0.14431 3.36214 2.79014 3.26209 33 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 34 3.07035 2.58352 3.11920 0.18165 34 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 35 3.41221 0.13273 3.46255 2.81376 35 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 36 0.14431 3.36214 2.79014 3.26209 36 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 37 2.93484 3.56933 0.11920 3.47210 37 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 38 3.07035 2.58352 3.11920 0.18165 38 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 39 2.93484 3.56933 0.11920 3.47210 39 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 40 3.07035 2.58352 3.11920 0.18165 40 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 41 3.41221 0.13273 3.46255 2.81376 41 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 42 3.41221 0.13273 3.46255 2.81376 42 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 43 0.14431 3.36214 2.79014 3.26209 43 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 44 3.41221 0.13273 3.46255 2.81376 44 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 45 0.14431 3.36214 2.79014 3.26209 45 - - 1.38629 1.38629 1.38629 1.38629 0.01881 3.98278 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_fortynine_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:11:14 2012 NSEQ 77 EFFN 3.501282 CKSUM 2729618959 STATS LOCAL MSV -7.5473 0.71934 STATS LOCAL VITERBI -7.7199 0.71934 STATS LOCAL FORWARD -3.9750 0.71934 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.55389 1.28430 1.53341 1.21762 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 0.00000 * 1 3.49696 0.12284 3.54366 2.87525 1 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 2 3.14500 2.63096 3.19098 0.16985 2 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 3 3.14500 2.63096 3.19098 0.16985 3 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 4 3.49696 0.12284 3.54366 2.87525 4 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 5 3.14500 2.63096 3.19098 0.16985 5 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 6 3.14500 2.63096 3.19098 0.16985 6 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 7 2.98586 3.64378 0.11121 3.55433 7 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 8 2.98586 3.64378 0.11121 3.55433 8 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 9 2.98586 3.64378 0.11121 3.55433 9 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 10 2.74372 0.38620 2.81168 1.62999 10 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 11 3.14500 2.63096 3.19098 0.16985 11 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 12 0.13478 3.43577 2.83786 3.34275 12 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 13 2.98586 3.64378 0.11121 3.55433 13 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 14 3.14500 2.63096 3.19098 0.16985 14 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 15 3.49696 0.12284 3.54366 2.87525 15 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 16 3.49696 0.12284 3.54366 2.87525 16 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 17 3.14500 2.63096 3.19098 0.16985 17 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 18 0.13478 3.43577 2.83786 3.34275 18 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 19 3.49696 0.12284 3.54366 2.87525 19 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 20 2.98586 3.64378 0.11121 3.55433 20 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 21 0.13478 3.43577 2.83786 3.34275 21 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 22 0.13478 3.43577 2.83786 3.34275 22 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 23 2.98586 3.64378 0.11121 3.55433 23 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 24 3.14500 2.63096 3.19098 0.16985 24 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 25 0.13478 3.43577 2.83786 3.34275 25 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 26 3.14500 2.63096 3.19098 0.16985 26 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 27 2.98586 3.64378 0.11121 3.55433 27 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 28 3.49696 0.12284 3.54366 2.87525 28 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 29 3.49696 0.12284 3.54366 2.87525 29 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 30 3.14500 2.63096 3.19098 0.16985 30 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 31 3.49696 0.12284 3.54366 2.87525 31 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 32 3.14500 2.63096 3.19098 0.16985 32 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 33 0.13478 3.43577 2.83786 3.34275 33 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 34 3.14500 2.63096 3.19098 0.16985 34 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 35 3.49696 0.12284 3.54366 2.87525 35 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 36 0.13478 3.43577 2.83786 3.34275 36 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 37 2.98586 3.64378 0.11121 3.55433 37 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 38 3.14500 2.63096 3.19098 0.16985 38 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 39 2.98586 3.64378 0.11121 3.55433 39 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 40 3.14500 2.63096 3.19098 0.16985 40 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 41 3.49696 0.12284 3.54366 2.87525 41 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 42 3.49696 0.12284 3.54366 2.87525 42 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 43 0.13478 3.43577 2.83786 3.34275 43 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 44 2.58677 0.51901 2.65746 1.34899 44 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04328 4.04328 1.46634 0.26236 1.09861 0.40547 45 0.13478 3.43577 2.83786 3.34275 45 - - 1.38629 1.38629 1.38629 1.38629 0.01801 4.02558 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_fortyone_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:09:53 2012 NSEQ 13 EFFN 3.570557 CKSUM 2743763495 STATS LOCAL MSV -7.4127 0.71933 STATS LOCAL VITERBI -7.7019 0.71933 STATS LOCAL FORWARD -3.6164 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.66856 1.57761 1.29461 1.10561 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 0.00000 * 1 2.99995 3.66446 0.10910 3.57724 1 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 2 3.52065 0.12024 3.56632 2.89230 2 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 3 0.13224 3.45644 2.85118 3.36541 3 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 4 3.52065 0.12024 3.56632 2.89230 4 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 5 3.16617 2.64439 3.21133 0.16666 5 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 6 3.16617 2.64439 3.21133 0.16666 6 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 7 2.50299 1.21696 2.57233 0.60573 7 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 8 3.52065 0.12024 3.56632 2.89230 8 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 9 2.99995 3.66446 0.10910 3.57724 9 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 10 2.99995 3.66446 0.10910 3.57724 10 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 11 2.99995 3.66446 0.10910 3.57724 11 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 12 3.16617 2.64439 3.21133 0.16666 12 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 13 0.13224 3.45644 2.85118 3.36541 13 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 14 3.16617 2.64439 3.21133 0.16666 14 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 15 3.16617 2.64439 3.21133 0.16666 15 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 16 3.52065 0.12024 3.56632 2.89230 16 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 17 3.52065 0.12024 3.56632 2.89230 17 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 18 3.16617 2.64439 3.21133 0.16666 18 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 19 2.99995 3.66446 0.10910 3.57724 19 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 20 2.99995 3.66446 0.10910 3.57724 20 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 21 0.60012 2.61486 1.22476 2.47401 21 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 22 0.13224 3.45644 2.85118 3.36541 22 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 23 2.99995 3.66446 0.10910 3.57724 23 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 24 3.16617 2.64439 3.21133 0.16666 24 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 25 0.13224 3.45644 2.85118 3.36541 25 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 26 3.16617 2.64439 3.21133 0.16666 26 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 27 2.99995 3.66446 0.10910 3.57724 27 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 28 3.52065 0.12024 3.56632 2.89230 28 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 29 3.16617 2.64439 3.21133 0.16666 29 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 30 3.16617 2.64439 3.21133 0.16666 30 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 31 2.99995 3.66446 0.10910 3.57724 31 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 32 3.16617 2.64439 3.21133 0.16666 32 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 33 0.13224 3.45644 2.85118 3.36541 33 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 34 3.16617 2.64439 3.21133 0.16666 34 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 35 3.52065 0.12024 3.56632 2.89230 35 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 36 0.13224 3.45644 2.85118 3.36541 36 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 37 2.99995 3.66446 0.10910 3.57724 37 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 38 3.16617 2.64439 3.21133 0.16666 38 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 39 2.99995 3.66446 0.10910 3.57724 39 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 40 3.16617 2.64439 3.21133 0.16666 40 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 41 3.52065 0.12024 3.56632 2.89230 41 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 42 3.16617 2.64439 3.21133 0.16666 42 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 43 2.99995 3.66446 0.10910 3.57724 43 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 44 3.16617 2.64439 3.21133 0.16666 44 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05535 4.05535 1.46634 0.26236 1.09861 0.40547 45 0.13224 3.45644 2.85118 3.36541 45 - - 1.38629 1.38629 1.38629 1.38629 0.01779 4.03787 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_fortyseven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:10:52 2012 NSEQ 3 EFFN 3.000000 CKSUM 3214309007 STATS LOCAL MSV -7.9945 0.72035 STATS LOCAL VITERBI -7.7983 0.72035 STATS LOCAL FORWARD -3.8773 0.72035 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.47802 1.26112 1.45372 1.36699 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.97980 2.52563 3.03204 0.19727 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.97980 2.52563 3.03204 0.19727 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.86982 3.47591 0.13017 3.36931 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.86982 3.47591 0.13017 3.36931 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.86982 3.47591 0.13017 3.36931 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.97980 2.52563 3.03204 0.19727 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.86982 3.47591 0.13017 3.36931 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.30705 0.14631 3.36166 2.73626 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 3.30705 0.14631 3.36166 2.73626 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.97980 2.52563 3.03204 0.19727 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.30705 0.14631 3.36166 2.73626 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.15719 3.27118 2.73043 3.16274 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.86982 3.47591 0.13017 3.36931 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.15719 3.27118 2.73043 3.16274 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 0.15719 3.27118 2.73043 3.16274 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.97980 2.52563 3.03204 0.19727 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.15719 3.27118 2.73043 3.16274 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.30705 0.14631 3.36166 2.73626 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.30705 0.14631 3.36166 2.73626 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 0.15719 3.27118 2.73043 3.16274 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_fortysix_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:10:44 2012 NSEQ 7 EFFN 3.284668 CKSUM 3559013258 STATS LOCAL MSV -8.1480 0.71933 STATS LOCAL VITERBI -7.6244 0.71933 STATS LOCAL FORWARD -4.0846 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.55436 1.38103 1.38462 1.24849 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 0.00000 * 1 3.07626 2.58729 3.12489 0.18068 1 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 2 3.07626 2.58729 3.12489 0.18068 2 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 3 3.41899 0.13190 3.46904 2.81871 3 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 4 3.41899 0.13190 3.46904 2.81871 4 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 5 2.93897 3.57531 0.11853 3.47870 5 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 6 2.93897 3.57531 0.11853 3.47870 6 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 7 2.93897 3.57531 0.11853 3.47870 7 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 8 2.93897 3.57531 0.11853 3.47870 8 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 9 3.41899 0.13190 3.46904 2.81871 9 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 10 3.07626 2.58729 3.12489 0.18068 10 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 11 0.14352 3.36802 2.79396 3.26852 11 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 12 2.93897 3.57531 0.11853 3.47870 12 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 13 0.14352 3.36802 2.79396 3.26852 13 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 14 3.07626 2.58729 3.12489 0.18068 14 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 15 3.41899 0.13190 3.46904 2.81871 15 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 16 3.07626 2.58729 3.12489 0.18068 16 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 17 3.07626 2.58729 3.12489 0.18068 17 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 18 3.41899 0.13190 3.46904 2.81871 18 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 19 2.93897 3.57531 0.11853 3.47870 19 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 20 2.93897 3.57531 0.11853 3.47870 20 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 21 0.14352 3.36802 2.79396 3.26852 21 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 22 0.14352 3.36802 2.79396 3.26852 22 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 23 2.93897 3.57531 0.11853 3.47870 23 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 24 3.07626 2.58729 3.12489 0.18068 24 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 25 0.14352 3.36802 2.79396 3.26852 25 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 26 3.07626 2.58729 3.12489 0.18068 26 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 27 2.93897 3.57531 0.11853 3.47870 27 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 28 3.41899 0.13190 3.46904 2.81871 28 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 29 3.41899 0.13190 3.46904 2.81871 29 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 30 3.07626 2.58729 3.12489 0.18068 30 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 31 3.41899 0.13190 3.46904 2.81871 31 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 32 3.07626 2.58729 3.12489 0.18068 32 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 33 0.14352 3.36802 2.79396 3.26852 33 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 34 3.07626 2.58729 3.12489 0.18068 34 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 35 3.41899 0.13190 3.46904 2.81871 35 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 36 0.14352 3.36802 2.79396 3.26852 36 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 37 2.93897 3.57531 0.11853 3.47870 37 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 38 3.07626 2.58729 3.12489 0.18068 38 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 39 2.93897 3.57531 0.11853 3.47870 39 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 40 3.07626 2.58729 3.12489 0.18068 40 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 41 3.41899 0.13190 3.46904 2.81871 41 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 42 3.41899 0.13190 3.46904 2.81871 42 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 43 0.14352 3.36802 2.79396 3.26852 43 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 44 3.07626 2.58729 3.12489 0.18068 44 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 45 0.14352 3.36802 2.79396 3.26852 45 - - 1.38629 1.38629 1.38629 1.38629 0.01875 3.98614 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_fortythree_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:10:12 2012 NSEQ 9 EFFN 3.256348 CKSUM 1671317991 STATS LOCAL MSV -7.9243 0.71931 STATS LOCAL VITERBI -7.6584 0.71931 STATS LOCAL FORWARD -4.1486 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.48059 1.25640 1.45713 1.36682 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 0.00000 * 1 3.40835 0.13320 3.45885 2.81094 1 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 2 3.06699 2.58138 3.11596 0.18220 2 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 3 3.06699 2.58138 3.11596 0.18220 3 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 4 3.40835 0.13320 3.45885 2.81094 4 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 5 3.40835 0.13320 3.45885 2.81094 5 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 6 2.93249 3.56592 0.11958 3.46834 6 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 7 2.93249 3.56592 0.11958 3.46834 7 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 8 2.93249 3.56592 0.11958 3.46834 8 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 9 2.93249 3.56592 0.11958 3.46834 9 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 10 3.40835 0.13320 3.45885 2.81094 10 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 11 3.06699 2.58138 3.11596 0.18220 11 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 12 0.14476 3.35879 2.78795 3.25843 12 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 13 2.93249 3.56592 0.11958 3.46834 13 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 14 3.06699 2.58138 3.11596 0.18220 14 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 15 3.40835 0.13320 3.45885 2.81094 15 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 16 3.40835 0.13320 3.45885 2.81094 16 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 17 3.06699 2.58138 3.11596 0.18220 17 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 18 3.40835 0.13320 3.45885 2.81094 18 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 19 0.14476 3.35879 2.78795 3.25843 19 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 20 2.93249 3.56592 0.11958 3.46834 20 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 21 0.14476 3.35879 2.78795 3.25843 21 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 22 0.14476 3.35879 2.78795 3.25843 22 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 23 2.93249 3.56592 0.11958 3.46834 23 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 24 3.06699 2.58138 3.11596 0.18220 24 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 25 0.14476 3.35879 2.78795 3.25843 25 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 26 3.06699 2.58138 3.11596 0.18220 26 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 27 2.93249 3.56592 0.11958 3.46834 27 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 28 3.40835 0.13320 3.45885 2.81094 28 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 29 3.40835 0.13320 3.45885 2.81094 29 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 30 3.06699 2.58138 3.11596 0.18220 30 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 31 0.14476 3.35879 2.78795 3.25843 31 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 32 3.06699 2.58138 3.11596 0.18220 32 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 33 0.14476 3.35879 2.78795 3.25843 33 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 34 3.06699 2.58138 3.11596 0.18220 34 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 35 3.40835 0.13320 3.45885 2.81094 35 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 36 0.14476 3.35879 2.78795 3.25843 36 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 37 2.93249 3.56592 0.11958 3.46834 37 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 38 3.06699 2.58138 3.11596 0.18220 38 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 39 2.93249 3.56592 0.11958 3.46834 39 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 40 3.06699 2.58138 3.11596 0.18220 40 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 41 3.40835 0.13320 3.45885 2.81094 41 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 42 3.40835 0.13320 3.45885 2.81094 42 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 43 0.14476 3.35879 2.78795 3.25843 43 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 44 3.40835 0.13320 3.45885 2.81094 44 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 45 0.14476 3.35879 2.78795 3.25843 45 - - 1.38629 1.38629 1.38629 1.38629 0.01885 3.98087 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_fortytwo_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:10:02 2012 NSEQ 56 EFFN 3.489746 CKSUM 3007113563 STATS LOCAL MSV -7.3786 0.71931 STATS LOCAL VITERBI -7.7130 0.71931 STATS LOCAL FORWARD -3.9070 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.57617 1.20386 1.45121 1.35126 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 0.00000 * 1 3.49296 0.12329 3.53984 2.87236 1 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 2 3.00468 2.30260 3.05601 0.21894 2 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 3 3.14144 2.62870 3.18756 0.17039 3 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 4 3.49296 0.12329 3.53984 2.87236 4 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 5 2.19980 0.35082 2.44866 2.31613 5 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 6 2.98348 3.64028 0.11157 3.55046 6 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 7 2.98348 3.64028 0.11157 3.55046 7 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 8 2.98348 3.64028 0.11157 3.55046 8 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 9 2.98348 3.64028 0.11157 3.55046 9 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 10 3.49296 0.12329 3.53984 2.87236 10 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 11 3.14144 2.62870 3.18756 0.17039 11 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 12 0.39582 2.58117 2.40355 1.82764 12 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 13 2.98348 3.64028 0.11157 3.55046 13 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 14 3.14144 2.62870 3.18756 0.17039 14 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 15 3.49296 0.12329 3.53984 2.87236 15 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 16 3.49296 0.12329 3.53984 2.87236 16 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 17 3.14144 2.62870 3.18756 0.17039 17 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 18 3.49296 0.12329 3.53984 2.87236 18 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 19 0.13521 3.43229 2.83561 3.33893 19 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 20 2.98348 3.64028 0.11157 3.55046 20 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 21 0.13521 3.43229 2.83561 3.33893 21 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 22 0.17762 3.27654 2.48713 3.17414 22 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 23 2.98348 3.64028 0.11157 3.55046 23 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 24 3.14144 2.62870 3.18756 0.17039 24 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 25 0.13521 3.43229 2.83561 3.33893 25 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 26 3.14144 2.62870 3.18756 0.17039 26 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 27 2.98348 3.64028 0.11157 3.55046 27 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 28 3.32147 0.16079 3.37394 2.54878 28 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 29 3.49296 0.12329 3.53984 2.87236 29 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 30 3.14144 2.62870 3.18756 0.17039 30 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 31 3.49296 0.12329 3.53984 2.87236 31 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 32 3.14144 2.62870 3.18756 0.17039 32 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 33 0.13521 3.43229 2.83561 3.33893 33 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 34 3.14144 2.62870 3.18756 0.17039 34 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 35 3.49296 0.12329 3.53984 2.87236 35 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 36 0.13521 3.43229 2.83561 3.33893 36 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 37 2.98348 3.64028 0.11157 3.55046 37 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 38 3.14144 2.62870 3.18756 0.17039 38 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 39 2.98348 3.64028 0.11157 3.55046 39 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 40 3.14144 2.62870 3.18756 0.17039 40 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 41 3.49296 0.12329 3.53984 2.87236 41 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 42 3.49296 0.12329 3.53984 2.87236 42 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 43 0.13521 3.43229 2.83561 3.33893 43 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 44 3.49296 0.12329 3.53984 2.87236 44 - - 1.38629 1.38629 1.38629 1.38629 0.03578 4.04125 4.04125 1.46634 0.26236 1.09861 0.40547 45 0.13521 3.43229 2.83561 3.33893 45 - - 1.38629 1.38629 1.38629 1.38629 0.01805 4.02352 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:02:15 2012 NSEQ 4 EFFN 3.433594 CKSUM 2731903192 STATS LOCAL MSV -7.2109 0.71932 STATS LOCAL VITERBI -7.7901 0.71932 STATS LOCAL FORWARD -4.0025 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.82067 1.48906 1.25448 1.11695 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 0.00000 * 1 3.47324 0.12552 3.52097 2.85812 1 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 2 0.13738 3.41512 2.82452 3.32011 2 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 3 3.47324 0.12552 3.52097 2.85812 3 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 4 3.12394 2.61759 3.17074 0.17309 4 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 5 3.12394 2.61759 3.17074 0.17309 5 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 6 3.47324 0.12552 3.52097 2.85812 6 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 7 3.47324 0.12552 3.52097 2.85812 7 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 8 3.12394 2.61759 3.17074 0.17309 8 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 9 2.97169 3.62301 0.11337 3.53137 9 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 10 2.97169 3.62301 0.11337 3.53137 10 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 11 3.12394 2.61759 3.17074 0.17309 11 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 12 3.12394 2.61759 3.17074 0.17309 12 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 13 0.13738 3.41512 2.82452 3.32011 13 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 14 2.97169 3.62301 0.11337 3.53137 14 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 15 3.12394 2.61759 3.17074 0.17309 15 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 16 3.47324 0.12552 3.52097 2.85812 16 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 17 3.47324 0.12552 3.52097 2.85812 17 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 18 2.97169 3.62301 0.11337 3.53137 18 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 19 2.97169 3.62301 0.11337 3.53137 19 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 20 2.97169 3.62301 0.11337 3.53137 20 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 21 2.97169 3.62301 0.11337 3.53137 21 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 22 0.13738 3.41512 2.82452 3.32011 22 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 23 2.97169 3.62301 0.11337 3.53137 23 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 24 3.12394 2.61759 3.17074 0.17309 24 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 25 0.13738 3.41512 2.82452 3.32011 25 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 26 3.12394 2.61759 3.17074 0.17309 26 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 27 2.97169 3.62301 0.11337 3.53137 27 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 28 3.12394 2.61759 3.17074 0.17309 28 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 29 3.12394 2.61759 3.17074 0.17309 29 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 30 3.12394 2.61759 3.17074 0.17309 30 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 31 2.97169 3.62301 0.11337 3.53137 31 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 32 3.12394 2.61759 3.17074 0.17309 32 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 33 0.13738 3.41512 2.82452 3.32011 33 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 34 3.12394 2.61759 3.17074 0.17309 34 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 35 3.47324 0.12552 3.52097 2.85812 35 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 36 0.13738 3.41512 2.82452 3.32011 36 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 37 2.97169 3.62301 0.11337 3.53137 37 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 38 3.12394 2.61759 3.17074 0.17309 38 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 39 2.97169 3.62301 0.11337 3.53137 39 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 40 3.12394 2.61759 3.17074 0.17309 40 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 41 3.47324 0.12552 3.52097 2.85812 41 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 42 3.47324 0.12552 3.52097 2.85812 42 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 43 2.97169 3.62301 0.11337 3.53137 43 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 44 3.12394 2.61759 3.17074 0.17309 44 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 45 2.42512 0.95399 2.49696 0.81193 45 - - 1.38629 1.38629 1.38629 1.38629 0.01824 4.01342 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_fourteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:04:22 2012 NSEQ 666 EFFN 3.600014 CKSUM 1820694249 STATS LOCAL MSV -7.3998 0.71932 STATS LOCAL VITERBI -7.7922 0.71932 STATS LOCAL FORWARD -3.9353 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.62347 1.49044 1.32069 1.16937 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 0.00000 * 1 3.53055 0.11916 3.57577 2.89941 1 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 2 0.13119 3.46507 2.85675 3.37489 2 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 3 3.53055 0.11916 3.57577 2.89941 3 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 4 3.17506 2.65002 3.21987 0.16535 4 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 5 3.17506 2.65002 3.21987 0.16535 5 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 6 2.68873 1.62150 2.75212 0.39953 6 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 7 3.53055 0.11916 3.57577 2.89941 7 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 8 3.00580 3.67309 0.10824 3.58679 8 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 9 3.00580 3.67309 0.10824 3.58679 9 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 10 3.00580 3.67309 0.10824 3.58679 10 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 11 3.17506 2.65002 3.21987 0.16535 11 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 12 3.17506 2.65002 3.21987 0.16535 12 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 13 0.13119 3.46507 2.85675 3.37489 13 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 14 3.17506 2.65002 3.21987 0.16535 14 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 15 2.14190 3.19865 0.22835 3.08110 15 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 16 3.53055 0.11916 3.57577 2.89941 16 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 17 3.53055 0.11916 3.57577 2.89941 17 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 18 3.17506 2.65002 3.21987 0.16535 18 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 19 3.00580 3.67309 0.10824 3.58679 19 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 20 3.00580 3.67309 0.10824 3.58679 20 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 21 0.13119 3.46507 2.85675 3.37489 21 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 22 0.13119 3.46507 2.85675 3.37489 22 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 23 3.00580 3.67309 0.10824 3.58679 23 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 24 3.17506 2.65002 3.21987 0.16535 24 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 25 0.13119 3.46507 2.85675 3.37489 25 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 26 3.17506 2.65002 3.21987 0.16535 26 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 27 3.00580 3.67309 0.10824 3.58679 27 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 28 2.47202 1.08199 2.54257 0.69716 28 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 29 3.23344 0.18765 3.28879 2.36046 29 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 30 3.17506 2.65002 3.21987 0.16535 30 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 31 3.00580 3.67309 0.10824 3.58679 31 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 32 3.17506 2.65002 3.21987 0.16535 32 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 33 0.13119 3.46507 2.85675 3.37489 33 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 34 3.17506 2.65002 3.21987 0.16535 34 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 35 3.53055 0.11916 3.57577 2.89941 35 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 36 0.13119 3.46507 2.85675 3.37489 36 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 37 3.00580 3.67309 0.10824 3.58679 37 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 38 3.17506 2.65002 3.21987 0.16535 38 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 39 3.00580 3.67309 0.10824 3.58679 39 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 40 3.17506 2.65002 3.21987 0.16535 40 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 41 3.53055 0.11916 3.57577 2.89941 41 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 42 3.53055 0.11916 3.57577 2.89941 42 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 43 3.00580 3.67309 0.10824 3.58679 43 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 44 3.17506 2.65002 3.21987 0.16535 44 - - 1.38629 1.38629 1.38629 1.38629 0.03509 4.06044 4.06044 1.46634 0.26236 1.09861 0.40547 45 0.13119 3.46507 2.85675 3.37489 45 - - 1.38629 1.38629 1.38629 1.38629 0.01770 4.04305 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_nine_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:03:24 2012 NSEQ 2 EFFN 2.000000 CKSUM 954821854 STATS LOCAL MSV -7.3654 0.72822 STATS LOCAL VITERBI -8.3615 0.72822 STATS LOCAL FORWARD -3.4843 0.72822 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.51878 1.44901 1.31953 1.27670 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.53331 3.02441 0.20344 2.88069 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_nineteena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:05:33 2012 NSEQ 2 EFFN 2.000000 CKSUM 583905888 STATS LOCAL MSV -7.3831 0.72833 STATS LOCAL VITERBI -8.4145 0.72833 STATS LOCAL FORWARD -3.4031 0.72833 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.58651 1.44473 1.32079 1.22885 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_nineteenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:05:40 2012 NSEQ 2 EFFN 2.000000 CKSUM 3878979993 STATS LOCAL MSV -7.4408 0.72801 STATS LOCAL VITERBI -8.1409 0.72801 STATS LOCAL FORWARD -3.5288 0.72801 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.58775 1.39261 1.26747 1.32560 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:01:47 2012 NSEQ 54 EFFN 3.529907 CKSUM 4149572995 STATS LOCAL MSV -7.2722 0.71932 STATS LOCAL VITERBI -7.7867 0.71932 STATS LOCAL FORWARD -3.8680 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.81840 1.55884 1.25178 1.07488 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 0.00000 * 1 3.50682 0.12175 3.55309 2.88235 1 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 2 0.13371 3.44437 2.84341 3.35218 2 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 3 3.50682 0.12175 3.55309 2.88235 3 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 4 3.15380 2.63654 3.19944 0.16852 4 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 5 3.15380 2.63654 3.19944 0.16852 5 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 6 2.44135 0.91372 2.51314 0.84185 6 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 7 3.50682 0.12175 3.55309 2.88235 7 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 8 2.99173 3.65239 0.11033 3.56387 8 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 9 2.99173 3.65239 0.11033 3.56387 9 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 10 2.99173 3.65239 0.11033 3.56387 10 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 11 3.15380 2.63654 3.19944 0.16852 11 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 12 3.15380 2.63654 3.19944 0.16852 12 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 13 0.13371 3.44437 2.84341 3.35218 13 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 14 2.99173 3.65239 0.11033 3.56387 14 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 15 3.15380 2.63654 3.19944 0.16852 15 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 16 3.50682 0.12175 3.55309 2.88235 16 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 17 3.50682 0.12175 3.55309 2.88235 17 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 18 3.15380 2.63654 3.19944 0.16852 18 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 19 2.99173 3.65239 0.11033 3.56387 19 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 20 2.99173 3.65239 0.11033 3.56387 20 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 21 2.99173 3.65239 0.11033 3.56387 21 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 22 0.13371 3.44437 2.84341 3.35218 22 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 23 2.99173 3.65239 0.11033 3.56387 23 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 24 3.15380 2.63654 3.19944 0.16852 24 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 25 0.13371 3.44437 2.84341 3.35218 25 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 26 3.15380 2.63654 3.19944 0.16852 26 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 27 2.99173 3.65239 0.11033 3.56387 27 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 28 3.03664 2.35237 3.08677 0.20923 28 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 29 3.15380 2.63654 3.19944 0.16852 29 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 30 3.15380 2.63654 3.19944 0.16852 30 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 31 2.99173 3.65239 0.11033 3.56387 31 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 32 3.15380 2.63654 3.19944 0.16852 32 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 33 0.13371 3.44437 2.84341 3.35218 33 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 34 3.15380 2.63654 3.19944 0.16852 34 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 35 3.50682 0.12175 3.55309 2.88235 35 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 36 0.13371 3.44437 2.84341 3.35218 36 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 37 2.99173 3.65239 0.11033 3.56387 37 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 38 3.15380 2.63654 3.19944 0.16852 38 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 39 2.99173 3.65239 0.11033 3.56387 39 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 40 2.75202 2.56380 3.02067 0.21020 40 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 41 3.50682 0.12175 3.55309 2.88235 41 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 42 3.50682 0.12175 3.55309 2.88235 42 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 43 2.99173 3.65239 0.11033 3.56387 43 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 44 3.15380 2.63654 3.19944 0.16852 44 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 45 2.95621 2.17827 3.00957 0.24152 45 - - 1.38629 1.38629 1.38629 1.38629 0.01792 4.03068 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_seven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:03:02 2012 NSEQ 7 EFFN 3.421387 CKSUM 3206112293 STATS LOCAL MSV -7.2541 0.71932 STATS LOCAL VITERBI -7.7079 0.71932 STATS LOCAL FORWARD -3.8333 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.62856 1.44393 1.29816 1.22161 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 0.00000 * 1 3.46890 0.12602 3.51682 2.85498 1 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 2 0.13786 3.41135 2.82208 3.31597 2 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 3 3.46890 0.12602 3.51682 2.85498 3 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 4 3.12010 2.61515 3.16705 0.17368 4 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 5 3.12010 2.61515 3.16705 0.17368 5 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 6 3.46890 0.12602 3.51682 2.85498 6 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 7 3.46890 0.12602 3.51682 2.85498 7 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 8 2.96909 3.61920 0.11378 3.52716 8 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 9 2.96909 3.61920 0.11378 3.52716 9 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 10 2.96909 3.61920 0.11378 3.52716 10 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 11 3.12010 2.61515 3.16705 0.17368 11 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 12 3.12010 2.61515 3.16705 0.17368 12 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 13 0.13786 3.41135 2.82208 3.31597 13 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 14 2.96909 3.61920 0.11378 3.52716 14 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 15 3.12010 2.61515 3.16705 0.17368 15 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 16 3.46890 0.12602 3.51682 2.85498 16 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 17 3.46890 0.12602 3.51682 2.85498 17 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 18 3.12010 2.61515 3.16705 0.17368 18 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 19 2.96909 3.61920 0.11378 3.52716 19 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 20 2.96909 3.61920 0.11378 3.52716 20 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 21 0.13786 3.41135 2.82208 3.31597 21 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 22 0.13786 3.41135 2.82208 3.31597 22 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 23 2.96909 3.61920 0.11378 3.52716 23 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 24 3.12010 2.61515 3.16705 0.17368 24 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 25 0.13786 3.41135 2.82208 3.31597 25 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 26 3.12010 2.61515 3.16705 0.17368 26 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 27 2.96909 3.61920 0.11378 3.52716 27 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 28 3.46890 0.12602 3.51682 2.85498 28 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 29 3.46890 0.12602 3.51682 2.85498 29 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 30 3.12010 2.61515 3.16705 0.17368 30 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 31 2.96909 3.61920 0.11378 3.52716 31 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 32 3.12010 2.61515 3.16705 0.17368 32 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 33 0.13786 3.41135 2.82208 3.31597 33 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 34 3.12010 2.61515 3.16705 0.17368 34 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 35 3.46890 0.12602 3.51682 2.85498 35 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 36 0.13786 3.41135 2.82208 3.31597 36 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 37 2.96909 3.61920 0.11378 3.52716 37 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 38 3.12010 2.61515 3.16705 0.17368 38 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 39 2.96909 3.61920 0.11378 3.52716 39 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 40 3.12010 2.61515 3.16705 0.17368 40 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 41 3.46890 0.12602 3.51682 2.85498 41 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 42 2.96909 3.61920 0.11378 3.52716 42 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 43 2.12530 2.15195 1.15062 0.80318 43 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 44 3.12010 2.61515 3.16705 0.17368 44 - - 1.38629 1.38629 1.38629 1.38629 0.03623 4.02916 4.02916 1.46634 0.26236 1.09861 0.40547 45 0.13786 3.41135 2.82208 3.31597 45 - - 1.38629 1.38629 1.38629 1.38629 0.01828 4.01121 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_seventeen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:05:06 2012 NSEQ 7 EFFN 3.325684 CKSUM 4279403002 STATS LOCAL MSV -8.1353 0.71933 STATS LOCAL VITERBI -7.7508 0.71933 STATS LOCAL FORWARD -4.0417 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.63501 1.44343 1.38603 1.14298 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 0.00000 * 1 3.43422 0.13008 3.48363 2.82980 1 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 2 0.14177 3.38122 2.80255 3.28298 2 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 3 3.43422 0.13008 3.48363 2.82980 3 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 4 3.08958 2.59576 3.13770 0.17852 4 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 5 3.08958 2.59576 3.13770 0.17852 5 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 6 3.08958 2.59576 3.13770 0.17852 6 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 7 3.43422 0.13008 3.48363 2.82980 7 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 8 2.94820 3.58873 0.11705 3.49350 8 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 9 2.94820 3.58873 0.11705 3.49350 9 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 10 2.94820 3.58873 0.11705 3.49350 10 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 11 3.08958 2.59576 3.13770 0.17852 11 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 12 3.08958 2.59576 3.13770 0.17852 12 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 13 3.43422 0.13008 3.48363 2.82980 13 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 14 3.08958 2.59576 3.13770 0.17852 14 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 15 0.14177 3.38122 2.80255 3.28298 15 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 16 3.43422 0.13008 3.48363 2.82980 16 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 17 3.43422 0.13008 3.48363 2.82980 17 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 18 3.08958 2.59576 3.13770 0.17852 18 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 19 2.94820 3.58873 0.11705 3.49350 19 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 20 2.94820 3.58873 0.11705 3.49350 20 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 21 0.14177 3.38122 2.80255 3.28298 21 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 22 0.14177 3.38122 2.80255 3.28298 22 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 23 2.94820 3.58873 0.11705 3.49350 23 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 24 3.08958 2.59576 3.13770 0.17852 24 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 25 0.14177 3.38122 2.80255 3.28298 25 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 26 3.08958 2.59576 3.13770 0.17852 26 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 27 2.94820 3.58873 0.11705 3.49350 27 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 28 3.08958 2.59576 3.13770 0.17852 28 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 29 3.43422 0.13008 3.48363 2.82980 29 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 30 3.08958 2.59576 3.13770 0.17852 30 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 31 2.94820 3.58873 0.11705 3.49350 31 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 32 3.08958 2.59576 3.13770 0.17852 32 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 33 0.14177 3.38122 2.80255 3.28298 33 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 34 3.08958 2.59576 3.13770 0.17852 34 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 35 3.43422 0.13008 3.48363 2.82980 35 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 36 0.14177 3.38122 2.80255 3.28298 36 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 37 2.94820 3.58873 0.11705 3.49350 37 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 38 3.08958 2.59576 3.13770 0.17852 38 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 39 2.94820 3.58873 0.11705 3.49350 39 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 40 3.08958 2.59576 3.13770 0.17852 40 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 41 3.43422 0.13008 3.48363 2.82980 41 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 42 3.43422 0.13008 3.48363 2.82980 42 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 43 2.94820 3.58873 0.11705 3.49350 43 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 44 3.08958 2.59576 3.13770 0.17852 44 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 45 0.14177 3.38122 2.80255 3.28298 45 - - 1.38629 1.38629 1.38629 1.38629 0.01860 3.99373 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_sixa_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:02:43 2012 NSEQ 61 EFFN 3.503479 CKSUM 1654444282 STATS LOCAL MSV -7.3075 0.71932 STATS LOCAL VITERBI -7.9016 0.71932 STATS LOCAL FORWARD -3.9539 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.71253 1.45084 1.31464 1.14997 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 0.00000 * 1 3.49772 0.12276 3.54439 2.87580 1 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 2 0.13470 3.43644 2.83829 3.34348 2 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 3 3.49772 0.12276 3.54439 2.87580 3 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 4 3.14568 2.63139 3.19163 0.16975 4 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 5 3.14568 2.63139 3.19163 0.16975 5 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 6 3.14568 2.63139 3.19163 0.16975 6 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 7 3.49772 0.12276 3.54439 2.87580 7 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 8 2.98632 3.64444 0.11114 3.55507 8 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 9 2.98632 3.64444 0.11114 3.55507 9 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 10 2.98632 3.64444 0.11114 3.55507 10 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 11 3.14568 2.63139 3.19163 0.16975 11 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 12 3.14568 2.63139 3.19163 0.16975 12 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 13 0.13470 3.43644 2.83829 3.34348 13 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 14 2.98632 3.64444 0.11114 3.55507 14 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 15 3.14568 2.63139 3.19163 0.16975 15 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 16 3.49772 0.12276 3.54439 2.87580 16 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 17 3.49772 0.12276 3.54439 2.87580 17 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 18 3.14568 2.63139 3.19163 0.16975 18 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 19 2.98632 3.64444 0.11114 3.55507 19 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 20 2.98632 3.64444 0.11114 3.55507 20 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 21 0.13470 3.43644 2.83829 3.34348 21 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 22 0.13470 3.43644 2.83829 3.34348 22 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 23 2.98632 3.64444 0.11114 3.55507 23 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 24 3.14568 2.63139 3.19163 0.16975 24 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 25 0.13470 3.43644 2.83829 3.34348 25 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 26 3.14568 2.63139 3.19163 0.16975 26 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 27 2.98632 3.64444 0.11114 3.55507 27 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 28 2.60573 1.49842 2.67155 0.45646 28 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 29 3.49772 0.12276 3.54439 2.87580 29 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 30 3.14568 2.63139 3.19163 0.16975 30 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 31 2.98632 3.64444 0.11114 3.55507 31 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 32 3.14568 2.63139 3.19163 0.16975 32 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 33 0.13470 3.43644 2.83829 3.34348 33 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 34 3.14568 2.63139 3.19163 0.16975 34 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 35 3.49772 0.12276 3.54439 2.87580 35 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 36 0.13470 3.43644 2.83829 3.34348 36 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 37 2.98632 3.64444 0.11114 3.55507 37 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 38 3.14568 2.63139 3.19163 0.16975 38 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 39 2.98632 3.64444 0.11114 3.55507 39 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 40 3.14568 2.63139 3.19163 0.16975 40 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 41 3.49772 0.12276 3.54439 2.87580 41 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 42 3.49772 0.12276 3.54439 2.87580 42 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 43 2.98632 3.64444 0.11114 3.55507 43 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 44 3.14568 2.63139 3.19163 0.16975 44 - - 1.38629 1.38629 1.38629 1.38629 0.03570 4.04366 4.04366 1.46634 0.26236 1.09861 0.40547 45 1.86867 0.40815 2.56286 2.26621 45 - - 1.38629 1.38629 1.38629 1.38629 0.01801 4.02597 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_sixb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:02:50 2012 NSEQ 102 EFFN 3.296448 CKSUM 2052102467 STATS LOCAL MSV -8.0385 0.71933 STATS LOCAL VITERBI -7.7229 0.71933 STATS LOCAL FORWARD -3.9548 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72566 1.31760 1.32137 1.24689 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 0.00000 * 1 3.42339 0.13137 3.47326 2.82191 1 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 2 0.14301 3.37183 2.79644 3.27269 2 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 3 3.42339 0.13137 3.47326 2.82191 3 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 4 3.08010 2.58973 3.12858 0.18005 4 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 5 3.08010 2.58973 3.12858 0.18005 5 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 6 3.42339 0.13137 3.47326 2.82191 6 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 7 3.42339 0.13137 3.47326 2.82191 7 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 8 2.94164 3.57919 0.11810 3.48297 8 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 9 2.94164 3.57919 0.11810 3.48297 9 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 10 2.94164 3.57919 0.11810 3.48297 10 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 11 3.08010 2.58973 3.12858 0.18005 11 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 12 3.08010 2.58973 3.12858 0.18005 12 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 13 3.42339 0.13137 3.47326 2.82191 13 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 14 2.94164 3.57919 0.11810 3.48297 14 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 15 3.08010 2.58973 3.12858 0.18005 15 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 16 3.42339 0.13137 3.47326 2.82191 16 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 17 3.42339 0.13137 3.47326 2.82191 17 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 18 3.08010 2.58973 3.12858 0.18005 18 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 19 2.94164 3.57919 0.11810 3.48297 19 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 20 2.94164 3.57919 0.11810 3.48297 20 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 21 0.14301 3.37183 2.79644 3.27269 21 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 22 0.14301 3.37183 2.79644 3.27269 22 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 23 2.94164 3.57919 0.11810 3.48297 23 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 24 3.08010 2.58973 3.12858 0.18005 24 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 25 0.14301 3.37183 2.79644 3.27269 25 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 26 3.08010 2.58973 3.12858 0.18005 26 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 27 2.94164 3.57919 0.11810 3.48297 27 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 28 3.30844 0.15686 3.36163 2.60466 28 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 29 3.23739 0.17438 3.29275 2.48169 29 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 30 3.08010 2.58973 3.12858 0.18005 30 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 31 2.94164 3.57919 0.11810 3.48297 31 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 32 3.08010 2.58973 3.12858 0.18005 32 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 33 0.14301 3.37183 2.79644 3.27269 33 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 34 3.08010 2.58973 3.12858 0.18005 34 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 35 3.42339 0.13137 3.47326 2.82191 35 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 36 0.14301 3.37183 2.79644 3.27269 36 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 37 2.94164 3.57919 0.11810 3.48297 37 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 38 3.08010 2.58973 3.12858 0.18005 38 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 39 2.94164 3.57919 0.11810 3.48297 39 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 40 3.08010 2.58973 3.12858 0.18005 40 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 41 3.42339 0.13137 3.47326 2.82191 41 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 42 3.42339 0.13137 3.47326 2.82191 42 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 43 2.94164 3.57919 0.11810 3.48297 43 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 44 3.08010 2.58973 3.12858 0.18005 44 - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00669 4.00669 1.46634 0.26236 1.09861 0.40547 45 0.14301 3.37183 2.79644 3.27269 45 - - 1.38629 1.38629 1.38629 1.38629 0.01870 3.98833 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_sixteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:04:49 2012 NSEQ 142 EFFN 3.436462 CKSUM 3135158707 STATS LOCAL MSV -7.3205 0.71932 STATS LOCAL VITERBI -7.7781 0.71932 STATS LOCAL FORWARD -3.9816 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.65337 1.32188 1.37654 1.23956 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 0.00000 * 1 3.47425 0.12541 3.52195 2.85885 1 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 2 0.13726 3.41601 2.82509 3.32108 2 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 3 3.47425 0.12541 3.52195 2.85885 3 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 4 3.12484 2.61816 3.17160 0.17295 4 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 5 3.12484 2.61816 3.17160 0.17295 5 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 6 3.28557 0.16759 3.33927 2.50815 6 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 7 3.47425 0.12541 3.52195 2.85885 7 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 8 2.97230 3.62390 0.11328 3.53235 8 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 9 2.97230 3.62390 0.11328 3.53235 9 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 10 2.97230 3.62390 0.11328 3.53235 10 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 11 3.12484 2.61816 3.17160 0.17295 11 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 12 3.12484 2.61816 3.17160 0.17295 12 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 13 0.13726 3.41601 2.82509 3.32108 13 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 14 3.12484 2.61816 3.17160 0.17295 14 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 15 2.98834 0.22123 2.76748 2.46186 15 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 16 3.47425 0.12541 3.52195 2.85885 16 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 17 3.47425 0.12541 3.52195 2.85885 17 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 18 3.12484 2.61816 3.17160 0.17295 18 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 19 2.97230 3.62390 0.11328 3.53235 19 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 20 2.97230 3.62390 0.11328 3.53235 20 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 21 0.33248 2.88183 1.81285 2.75452 21 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 22 0.13726 3.41601 2.82509 3.32108 22 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 23 2.97230 3.62390 0.11328 3.53235 23 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 24 3.12484 2.61816 3.17160 0.17295 24 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 25 0.13726 3.41601 2.82509 3.32108 25 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 26 3.12484 2.61816 3.17160 0.17295 26 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 27 2.97230 3.62390 0.11328 3.53235 27 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 28 3.28557 0.16759 3.33927 2.50815 28 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 29 3.47425 0.12541 3.52195 2.85885 29 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 30 3.12484 2.61816 3.17160 0.17295 30 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 31 2.97230 3.62390 0.11328 3.53235 31 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 32 3.12484 2.61816 3.17160 0.17295 32 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 33 0.13726 3.41601 2.82509 3.32108 33 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 34 3.12484 2.61816 3.17160 0.17295 34 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 35 3.47425 0.12541 3.52195 2.85885 35 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 36 0.13726 3.41601 2.82509 3.32108 36 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 37 2.97230 3.62390 0.11328 3.53235 37 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 38 3.12484 2.61816 3.17160 0.17295 38 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 39 2.97230 3.62390 0.11328 3.53235 39 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 40 3.12484 2.61816 3.17160 0.17295 40 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 41 3.47425 0.12541 3.52195 2.85885 41 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 42 3.47425 0.12541 3.52195 2.85885 42 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 43 2.97230 3.62390 0.11328 3.53235 43 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 44 3.12484 2.61816 3.17160 0.17295 44 - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03184 4.03184 1.46634 0.26236 1.09861 0.40547 45 0.13726 3.41601 2.82509 3.32108 45 - - 1.38629 1.38629 1.38629 1.38629 0.01823 4.01394 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_ten_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:03:33 2012 NSEQ 54 EFFN 3.470581 CKSUM 1760084942 STATS LOCAL MSV -7.4293 0.71931 STATS LOCAL VITERBI -7.7359 0.71931 STATS LOCAL FORWARD -3.9826 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.71129 1.36466 1.27266 1.25944 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 0.00000 * 1 3.48627 0.12404 3.53344 2.86754 1 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 2 0.13594 3.42647 2.83185 3.33254 2 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 3 3.48627 0.12404 3.53344 2.86754 3 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 4 3.13549 2.62492 3.18184 0.17130 4 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 5 2.60551 1.51324 2.67124 0.45134 5 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 6 3.48627 0.12404 3.53344 2.86754 6 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 7 3.48627 0.12404 3.53344 2.86754 7 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 8 2.97949 3.63442 0.11218 3.54399 8 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 9 2.97949 3.63442 0.11218 3.54399 9 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 10 2.97949 3.63442 0.11218 3.54399 10 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 11 3.13549 2.62492 3.18184 0.17130 11 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 12 3.13549 2.62492 3.18184 0.17130 12 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 13 0.13594 3.42647 2.83185 3.33254 13 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 14 2.97949 3.63442 0.11218 3.54399 14 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 15 3.13549 2.62492 3.18184 0.17130 15 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 16 3.48627 0.12404 3.53344 2.86754 16 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 17 3.48627 0.12404 3.53344 2.86754 17 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 18 3.13549 2.62492 3.18184 0.17130 18 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 19 2.97949 3.63442 0.11218 3.54399 19 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 20 2.97949 3.63442 0.11218 3.54399 20 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 21 2.10332 3.14365 0.24059 3.02289 21 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 22 0.13594 3.42647 2.83185 3.33254 22 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 23 2.27347 3.25435 0.20437 3.14004 23 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 24 3.13549 2.62492 3.18184 0.17130 24 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 25 0.13594 3.42647 2.83185 3.33254 25 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 26 3.13549 2.62492 3.18184 0.17130 26 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 27 2.97949 3.63442 0.11218 3.54399 27 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 28 3.48627 0.12404 3.53344 2.86754 28 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 29 3.48627 0.12404 3.53344 2.86754 29 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 30 3.13549 2.62492 3.18184 0.17130 30 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 31 2.97949 3.63442 0.11218 3.54399 31 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 32 3.13549 2.62492 3.18184 0.17130 32 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 33 0.13594 3.42647 2.83185 3.33254 33 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 34 3.13549 2.62492 3.18184 0.17130 34 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 35 3.48627 0.12404 3.53344 2.86754 35 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 36 0.13594 3.42647 2.83185 3.33254 36 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 37 2.81765 3.31135 0.16502 2.88403 37 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 38 3.13549 2.62492 3.18184 0.17130 38 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 39 2.97949 3.63442 0.11218 3.54399 39 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 40 3.13549 2.62492 3.18184 0.17130 40 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 41 3.48627 0.12404 3.53344 2.86754 41 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 42 3.48627 0.12404 3.53344 2.86754 42 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 43 2.97949 3.63442 0.11218 3.54399 43 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 44 3.13549 2.62492 3.18184 0.17130 44 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.09861 0.40547 45 0.13594 3.42647 2.83185 3.33254 45 - - 1.38629 1.38629 1.38629 1.38629 0.01811 4.02008 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_thirteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:04:10 2012 NSEQ 81 EFFN 3.267883 CKSUM 2455870292 STATS LOCAL MSV -8.1309 0.71934 STATS LOCAL VITERBI -7.7106 0.71934 STATS LOCAL FORWARD -4.0603 0.71934 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72312 1.37867 1.25801 1.25400 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 0.00000 * 1 3.41270 0.13267 3.46301 2.81411 1 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 2 0.14426 3.36256 2.79041 3.26255 2 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 3 3.41270 0.13267 3.46301 2.81411 3 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 4 3.07077 2.58379 3.11961 0.18158 4 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 5 3.07077 2.58379 3.11961 0.18158 5 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 6 3.41270 0.13267 3.46301 2.81411 6 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 7 3.41270 0.13267 3.46301 2.81411 7 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 8 2.93514 3.56976 0.11915 3.47257 8 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 9 2.93514 3.56976 0.11915 3.47257 9 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 10 2.93514 3.56976 0.11915 3.47257 10 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 11 3.07077 2.58379 3.11961 0.18158 11 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 12 3.07077 2.58379 3.11961 0.18158 12 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 13 0.14426 3.36256 2.79041 3.26255 13 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 14 2.98399 2.37647 3.03577 0.21258 14 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 15 2.93514 3.56976 0.11915 3.47257 15 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 16 3.41270 0.13267 3.46301 2.81411 16 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 17 3.41270 0.13267 3.46301 2.81411 17 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 18 3.07077 2.58379 3.11961 0.18158 18 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 19 2.93514 3.56976 0.11915 3.47257 19 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 20 2.93514 3.56976 0.11915 3.47257 20 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 21 2.93514 3.56976 0.11915 3.47257 21 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 22 0.14426 3.36256 2.79041 3.26255 22 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 23 2.93514 3.56976 0.11915 3.47257 23 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 24 3.07077 2.58379 3.11961 0.18158 24 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 25 0.14426 3.36256 2.79041 3.26255 25 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 26 3.07077 2.58379 3.11961 0.18158 26 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 27 2.93514 3.56976 0.11915 3.47257 27 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 28 3.41270 0.13267 3.46301 2.81411 28 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 29 3.41270 0.13267 3.46301 2.81411 29 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 30 3.07077 2.58379 3.11961 0.18158 30 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 31 2.93514 3.56976 0.11915 3.47257 31 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 32 3.07077 2.58379 3.11961 0.18158 32 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 33 0.14426 3.36256 2.79041 3.26255 33 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 34 3.07077 2.58379 3.11961 0.18158 34 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 35 3.41270 0.13267 3.46301 2.81411 35 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 36 0.14426 3.36256 2.79041 3.26255 36 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 37 2.93514 3.56976 0.11915 3.47257 37 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 38 3.07077 2.58379 3.11961 0.18158 38 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 39 2.93514 3.56976 0.11915 3.47257 39 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 40 3.07077 2.58379 3.11961 0.18158 40 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 41 3.41270 0.13267 3.46301 2.81411 41 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 42 3.41270 0.13267 3.46301 2.81411 42 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 43 2.93514 3.56976 0.11915 3.47257 43 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 44 3.07077 2.58379 3.11961 0.18158 44 - - 1.38629 1.38629 1.38629 1.38629 0.03726 4.00148 4.00148 1.46634 0.26236 1.09861 0.40547 45 0.14426 3.36256 2.79041 3.26255 45 - - 1.38629 1.38629 1.38629 1.38629 0.01881 3.98302 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_thirty_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:08:07 2012 NSEQ 15 EFFN 3.299561 CKSUM 1307625746 STATS LOCAL MSV -8.0463 0.71932 STATS LOCAL VITERBI -7.8277 0.71932 STATS LOCAL FORWARD -4.0097 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.75107 1.25569 1.24967 1.36676 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 0.00000 * 1 0.14288 3.37283 2.79710 3.27379 1 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 2 3.42454 0.13123 3.47436 2.82276 2 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 3 3.08112 2.59037 3.12956 0.17989 3 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 4 3.42454 0.13123 3.47436 2.82276 4 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 5 3.42454 0.13123 3.47436 2.82276 5 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 6 3.42454 0.13123 3.47436 2.82276 6 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 7 2.94234 3.58021 0.11799 3.48410 7 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 8 2.94234 3.58021 0.11799 3.48410 8 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 9 2.94234 3.58021 0.11799 3.48410 9 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 10 3.08112 2.59037 3.12956 0.17989 10 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 11 3.08112 2.59037 3.12956 0.17989 11 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 12 3.42454 0.13123 3.47436 2.82276 12 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 13 0.42062 2.72717 1.59408 2.59210 13 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 14 2.94234 3.58021 0.11799 3.48410 14 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 15 3.42454 0.13123 3.47436 2.82276 15 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 16 3.42454 0.13123 3.47436 2.82276 16 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 17 3.08112 2.59037 3.12956 0.17989 17 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 18 3.42454 0.13123 3.47436 2.82276 18 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 19 2.94234 3.58021 0.11799 3.48410 19 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 20 2.94234 3.58021 0.11799 3.48410 20 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 21 2.94234 3.58021 0.11799 3.48410 21 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 22 0.14288 3.37283 2.79710 3.27379 22 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 23 2.94234 3.58021 0.11799 3.48410 23 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 24 3.08112 2.59037 3.12956 0.17989 24 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 25 0.14288 3.37283 2.79710 3.27379 25 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 26 3.08112 2.59037 3.12956 0.17989 26 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 27 2.94234 3.58021 0.11799 3.48410 27 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 28 3.42454 0.13123 3.47436 2.82276 28 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 29 3.42454 0.13123 3.47436 2.82276 29 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 30 3.08112 2.59037 3.12956 0.17989 30 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 31 2.94234 3.58021 0.11799 3.48410 31 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 32 3.08112 2.59037 3.12956 0.17989 32 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 33 0.14288 3.37283 2.79710 3.27379 33 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 34 3.08112 2.59037 3.12956 0.17989 34 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 35 3.42454 0.13123 3.47436 2.82276 35 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 36 0.14288 3.37283 2.79710 3.27379 36 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 37 2.94234 3.58021 0.11799 3.48410 37 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 38 3.08112 2.59037 3.12956 0.17989 38 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 39 2.94234 3.58021 0.11799 3.48410 39 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 40 3.08112 2.59037 3.12956 0.17989 40 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 41 3.42454 0.13123 3.47436 2.82276 41 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 42 3.42454 0.13123 3.47436 2.82276 42 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 43 2.94234 3.58021 0.11799 3.48410 43 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 44 3.08112 2.59037 3.12956 0.17989 44 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00725 4.00725 1.46634 0.26236 1.09861 0.40547 45 0.14288 3.37283 2.79710 3.27379 45 - - 1.38629 1.38629 1.38629 1.38629 0.01869 3.98890 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_thirtyeight_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:09:27 2012 NSEQ 32 EFFN 3.347656 CKSUM 3610209238 STATS LOCAL MSV -8.0410 0.71931 STATS LOCAL VITERBI -7.5823 0.71931 STATS LOCAL FORWARD -4.2622 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.82826 1.23825 1.32178 1.26317 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 0.00000 * 1 3.44228 0.12912 3.49135 2.83567 1 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 2 3.09665 2.60026 3.14450 0.17739 2 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 3 3.09665 2.60026 3.14450 0.17739 3 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 4 3.44228 0.12912 3.49135 2.83567 4 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 5 3.44228 0.12912 3.49135 2.83567 5 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 6 2.95307 3.59583 0.11628 3.50134 6 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 7 2.95307 3.59583 0.11628 3.50134 7 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 8 2.95307 3.59583 0.11628 3.50134 8 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 9 3.44228 0.12912 3.49135 2.83567 9 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 10 3.09665 2.60026 3.14450 0.17739 10 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 11 3.44228 0.12912 3.49135 2.83567 11 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 12 3.09665 2.60026 3.14450 0.17739 12 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 13 3.44228 0.12912 3.49135 2.83567 13 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 14 3.09665 2.60026 3.14450 0.17739 14 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 15 0.14085 3.38823 2.80709 3.29064 15 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 16 3.44228 0.12912 3.49135 2.83567 16 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 17 2.52787 1.40265 2.59570 0.51144 17 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 18 3.44228 0.12912 3.49135 2.83567 18 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 19 2.95307 3.59583 0.11628 3.50134 19 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 20 2.95307 3.59583 0.11628 3.50134 20 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 21 2.95307 3.59583 0.11628 3.50134 21 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 22 0.14085 3.38823 2.80709 3.29064 22 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 23 2.95307 3.59583 0.11628 3.50134 23 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 24 3.09665 2.60026 3.14450 0.17739 24 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 25 0.14085 3.38823 2.80709 3.29064 25 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 26 3.09665 2.60026 3.14450 0.17739 26 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 27 2.95307 3.59583 0.11628 3.50134 27 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 28 3.44228 0.12912 3.49135 2.83567 28 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 29 3.44228 0.12912 3.49135 2.83567 29 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 30 3.09665 2.60026 3.14450 0.17739 30 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 31 2.95307 3.59583 0.11628 3.50134 31 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 32 3.09665 2.60026 3.14450 0.17739 32 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 33 0.14085 3.38823 2.80709 3.29064 33 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 34 3.09665 2.60026 3.14450 0.17739 34 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 35 3.44228 0.12912 3.49135 2.83567 35 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 36 0.14085 3.38823 2.80709 3.29064 36 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 37 2.95307 3.59583 0.11628 3.50134 37 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 38 3.09665 2.60026 3.14450 0.17739 38 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 39 2.95307 3.59583 0.11628 3.50134 39 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 40 3.09665 2.60026 3.14450 0.17739 40 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 41 3.44228 0.12912 3.49135 2.83567 41 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 42 3.44228 0.12912 3.49135 2.83567 42 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 43 2.95307 3.59583 0.11628 3.50134 43 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 44 3.09665 2.60026 3.14450 0.17739 44 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 45 0.14085 3.38823 2.80709 3.29064 45 - - 1.38629 1.38629 1.38629 1.38629 0.01853 3.99777 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_thirtyfive_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:08:49 2012 NSEQ 2 EFFN 2.000000 CKSUM 2498029638 STATS LOCAL MSV -7.4409 0.72903 STATS LOCAL VITERBI -8.4009 0.72903 STATS LOCAL FORWARD -3.3767 0.72903 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.51428 1.48093 1.37290 1.20652 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.15554 1.00938 2.23102 0.88601 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.23862 2.84929 2.43386 2.70756 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_thirtyfour_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:08:38 2012 NSEQ 2 EFFN 2.000000 CKSUM 3688506537 STATS LOCAL MSV -7.4526 0.72833 STATS LOCAL VITERBI -8.4105 0.72833 STATS LOCAL FORWARD -3.4748 0.72833 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.58650 1.44503 1.32078 1.22863 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_thirtynine_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:09:38 2012 NSEQ 9 EFFN 3.370605 CKSUM 1650032649 STATS LOCAL MSV -7.2507 0.71932 STATS LOCAL VITERBI -7.7539 0.71932 STATS LOCAL FORWARD -4.0767 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.50750 1.27850 1.23306 1.56693 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 0.00000 * 1 0.13990 3.39548 2.81180 3.29859 1 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 2 3.45064 0.12814 3.49935 2.84174 2 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 3 0.72078 2.53778 1.06916 2.39374 3 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 4 0.13990 3.39548 2.81180 3.29859 4 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 5 3.45064 0.12814 3.49935 2.84174 5 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 6 3.45064 0.12814 3.49935 2.84174 6 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 7 2.95812 3.60318 0.11549 3.50945 7 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 8 2.95812 3.60318 0.11549 3.50945 8 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 9 2.95812 3.60318 0.11549 3.50945 9 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 10 2.95812 3.60318 0.11549 3.50945 10 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 11 0.13990 3.39548 2.81180 3.29859 11 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 12 2.70591 0.39851 2.77457 1.61197 12 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 13 3.45064 0.12814 3.49935 2.84174 13 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 14 0.13990 3.39548 2.81180 3.29859 14 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 15 3.10400 2.60493 3.15157 0.17622 15 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 16 3.45064 0.12814 3.49935 2.84174 16 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 17 3.45064 0.12814 3.49935 2.84174 17 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 18 3.45064 0.12814 3.49935 2.84174 18 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 19 2.95812 3.60318 0.11549 3.50945 19 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 20 2.95812 3.60318 0.11549 3.50945 20 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 21 2.95812 3.60318 0.11549 3.50945 21 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 22 0.13990 3.39548 2.81180 3.29859 22 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 23 2.95812 3.60318 0.11549 3.50945 23 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 24 3.10400 2.60493 3.15157 0.17622 24 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 25 0.13990 3.39548 2.81180 3.29859 25 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 26 3.10400 2.60493 3.15157 0.17622 26 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 27 2.95812 3.60318 0.11549 3.50945 27 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 28 3.45064 0.12814 3.49935 2.84174 28 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 29 3.45064 0.12814 3.49935 2.84174 29 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 30 3.10400 2.60493 3.15157 0.17622 30 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 31 2.95812 3.60318 0.11549 3.50945 31 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 32 3.10400 2.60493 3.15157 0.17622 32 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 33 0.13990 3.39548 2.81180 3.29859 33 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 34 3.10400 2.60493 3.15157 0.17622 34 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 35 3.45064 0.12814 3.49935 2.84174 35 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 36 0.13990 3.39548 2.81180 3.29859 36 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 37 2.95812 3.60318 0.11549 3.50945 37 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 38 3.10400 2.60493 3.15157 0.17622 38 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 39 2.95812 3.60318 0.11549 3.50945 39 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 40 3.10400 2.60493 3.15157 0.17622 40 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 41 3.45064 0.12814 3.49935 2.84174 41 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 42 3.45064 0.12814 3.49935 2.84174 42 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 43 2.95812 3.60318 0.11549 3.50945 43 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 44 3.10400 2.60493 3.15157 0.17622 44 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02009 4.02009 1.46634 0.26236 1.09861 0.40547 45 0.13990 3.39548 2.81180 3.29859 45 - - 1.38629 1.38629 1.38629 1.38629 0.01845 4.00197 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_thirtyseven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:09:16 2012 NSEQ 7 EFFN 3.298340 CKSUM 3156643514 STATS LOCAL MSV -7.8856 0.71932 STATS LOCAL VITERBI -7.8119 0.71932 STATS LOCAL FORWARD -4.3505 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72989 1.31007 1.38906 1.19210 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 0.00000 * 1 3.42409 0.13129 3.47393 2.82243 1 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 2 3.08072 2.59012 3.12917 0.17995 2 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 3 3.08072 2.59012 3.12917 0.17995 3 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 4 3.42409 0.13129 3.47393 2.82243 4 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 5 3.08072 2.59012 3.12917 0.17995 5 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 6 2.94206 3.57981 0.11803 3.48366 6 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 7 2.94206 3.57981 0.11803 3.48366 7 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 8 2.94206 3.57981 0.11803 3.48366 8 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 9 3.42409 0.13129 3.47393 2.82243 9 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 10 3.08072 2.59012 3.12917 0.17995 10 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 11 3.42409 0.13129 3.47393 2.82243 11 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 12 3.08072 2.59012 3.12917 0.17995 12 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 13 3.42409 0.13129 3.47393 2.82243 13 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 14 3.08072 2.59012 3.12917 0.17995 14 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 15 0.14293 3.37244 2.79684 3.27336 15 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 16 3.42409 0.13129 3.47393 2.82243 16 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 17 3.08072 2.59012 3.12917 0.17995 17 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 18 3.42409 0.13129 3.47393 2.82243 18 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 19 0.14293 3.37244 2.79684 3.27336 19 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 20 2.94206 3.57981 0.11803 3.48366 20 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 21 2.94206 3.57981 0.11803 3.48366 21 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 22 0.14293 3.37244 2.79684 3.27336 22 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 23 2.94206 3.57981 0.11803 3.48366 23 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 24 3.08072 2.59012 3.12917 0.17995 24 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 25 0.14293 3.37244 2.79684 3.27336 25 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 26 3.08072 2.59012 3.12917 0.17995 26 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 27 2.94206 3.57981 0.11803 3.48366 27 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 28 3.42409 0.13129 3.47393 2.82243 28 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 29 3.42409 0.13129 3.47393 2.82243 29 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 30 3.08072 2.59012 3.12917 0.17995 30 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 31 2.94206 3.57981 0.11803 3.48366 31 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 32 3.08072 2.59012 3.12917 0.17995 32 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 33 0.14293 3.37244 2.79684 3.27336 33 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 34 3.08072 2.59012 3.12917 0.17995 34 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 35 3.42409 0.13129 3.47393 2.82243 35 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 36 0.14293 3.37244 2.79684 3.27336 36 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 37 2.94206 3.57981 0.11803 3.48366 37 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 38 3.08072 2.59012 3.12917 0.17995 38 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 39 2.94206 3.57981 0.11803 3.48366 39 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 40 3.08072 2.59012 3.12917 0.17995 40 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 41 3.42409 0.13129 3.47393 2.82243 41 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 42 3.42409 0.13129 3.47393 2.82243 42 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 43 2.94206 3.57981 0.11803 3.48366 43 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 44 3.08072 2.59012 3.12917 0.17995 44 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 45 0.14293 3.37244 2.79684 3.27336 45 - - 1.38629 1.38629 1.38629 1.38629 0.01870 3.98868 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_thirtysix_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:09:02 2012 NSEQ 5 EFFN 3.325195 CKSUM 2741607073 STATS LOCAL MSV -8.1122 0.71933 STATS LOCAL VITERBI -7.8558 0.71933 STATS LOCAL FORWARD -4.0391 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.54604 1.35561 1.25272 1.41307 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 0.00000 * 1 0.14179 3.38107 2.80245 3.28281 1 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 2 3.43404 0.13010 3.48346 2.82967 2 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 3 3.08942 2.59566 3.13755 0.17855 3 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 4 0.14179 3.38107 2.80245 3.28281 4 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 5 3.43404 0.13010 3.48346 2.82967 5 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 6 3.43404 0.13010 3.48346 2.82967 6 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 7 2.94809 3.58857 0.11707 3.49333 7 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 8 2.94809 3.58857 0.11707 3.49333 8 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 9 2.94809 3.58857 0.11707 3.49333 9 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 10 3.08942 2.59566 3.13755 0.17855 10 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 11 3.08942 2.59566 3.13755 0.17855 11 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 12 0.14179 3.38107 2.80245 3.28281 12 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 13 3.43404 0.13010 3.48346 2.82967 13 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 14 0.14179 3.38107 2.80245 3.28281 14 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 15 2.94809 3.58857 0.11707 3.49333 15 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 16 3.43404 0.13010 3.48346 2.82967 16 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 17 2.43340 0.73754 2.50592 1.04307 17 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 18 3.43404 0.13010 3.48346 2.82967 18 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 19 2.94809 3.58857 0.11707 3.49333 19 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 20 2.94809 3.58857 0.11707 3.49333 20 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 21 2.94809 3.58857 0.11707 3.49333 21 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 22 0.14179 3.38107 2.80245 3.28281 22 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 23 2.94809 3.58857 0.11707 3.49333 23 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 24 3.08942 2.59566 3.13755 0.17855 24 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 25 0.14179 3.38107 2.80245 3.28281 25 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 26 3.08942 2.59566 3.13755 0.17855 26 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 27 2.94809 3.58857 0.11707 3.49333 27 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 28 3.43404 0.13010 3.48346 2.82967 28 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 29 3.43404 0.13010 3.48346 2.82967 29 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 30 3.08942 2.59566 3.13755 0.17855 30 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 31 2.94809 3.58857 0.11707 3.49333 31 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 32 3.08942 2.59566 3.13755 0.17855 32 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 33 0.14179 3.38107 2.80245 3.28281 33 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 34 3.08942 2.59566 3.13755 0.17855 34 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 35 3.43404 0.13010 3.48346 2.82967 35 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 36 0.14179 3.38107 2.80245 3.28281 36 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 37 2.94809 3.58857 0.11707 3.49333 37 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 38 3.08942 2.59566 3.13755 0.17855 38 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 39 2.94809 3.58857 0.11707 3.49333 39 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 40 3.08942 2.59566 3.13755 0.17855 40 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 41 3.43404 0.13010 3.48346 2.82967 41 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 42 3.43404 0.13010 3.48346 2.82967 42 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 43 2.94809 3.58857 0.11707 3.49333 43 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 44 3.08942 2.59566 3.13755 0.17855 44 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 45 0.14179 3.38107 2.80245 3.28281 45 - - 1.38629 1.38629 1.38629 1.38629 0.01860 3.99364 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_thirtythree_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:08:25 2012 NSEQ 6 EFFN 3.377930 CKSUM 3964629881 STATS LOCAL MSV -7.3148 0.71932 STATS LOCAL VITERBI -7.7351 0.71932 STATS LOCAL FORWARD -3.9782 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.70369 1.37651 1.27975 1.24680 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 0.00000 * 1 3.45329 0.12783 3.50189 2.84367 1 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 2 0.13960 3.39779 2.81330 3.30112 2 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 3 3.45329 0.12783 3.50189 2.84367 3 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 4 3.10634 2.60641 3.15381 0.17585 4 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 5 3.10634 2.60641 3.15381 0.17585 5 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 6 3.45329 0.12783 3.50189 2.84367 6 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 7 3.45329 0.12783 3.50189 2.84367 7 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 8 2.95971 3.60551 0.11524 3.51203 8 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 9 2.95971 3.60551 0.11524 3.51203 9 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 10 2.95971 3.60551 0.11524 3.51203 10 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 11 3.10634 2.60641 3.15381 0.17585 11 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 12 3.10634 2.60641 3.15381 0.17585 12 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 13 0.13960 3.39779 2.81330 3.30112 13 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 14 2.95971 3.60551 0.11524 3.51203 14 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 15 3.10634 2.60641 3.15381 0.17585 15 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 16 3.45329 0.12783 3.50189 2.84367 16 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 17 3.45329 0.12783 3.50189 2.84367 17 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 18 3.10634 2.60641 3.15381 0.17585 18 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 19 2.95971 3.60551 0.11524 3.51203 19 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 20 2.95971 3.60551 0.11524 3.51203 20 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 21 1.35702 2.66681 0.52246 2.52523 21 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 22 0.13960 3.39779 2.81330 3.30112 22 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 23 2.95971 3.60551 0.11524 3.51203 23 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 24 3.10634 2.60641 3.15381 0.17585 24 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 25 0.13960 3.39779 2.81330 3.30112 25 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 26 3.10634 2.60641 3.15381 0.17585 26 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 27 2.95971 3.60551 0.11524 3.51203 27 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 28 3.45329 0.12783 3.50189 2.84367 28 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 29 3.45329 0.12783 3.50189 2.84367 29 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 30 3.10634 2.60641 3.15381 0.17585 30 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 31 2.95971 3.60551 0.11524 3.51203 31 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 32 3.10634 2.60641 3.15381 0.17585 32 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 33 0.13960 3.39779 2.81330 3.30112 33 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 34 3.10634 2.60641 3.15381 0.17585 34 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 35 3.45329 0.12783 3.50189 2.84367 35 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 36 0.13960 3.39779 2.81330 3.30112 36 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 37 2.95971 3.60551 0.11524 3.51203 37 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 38 3.10634 2.60641 3.15381 0.17585 38 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 39 2.95971 3.60551 0.11524 3.51203 39 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 40 3.10634 2.60641 3.15381 0.17585 40 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 41 3.45329 0.12783 3.50189 2.84367 41 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 42 3.45329 0.12783 3.50189 2.84367 42 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 43 2.95971 3.60551 0.11524 3.51203 43 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 44 3.10634 2.60641 3.15381 0.17585 44 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02140 4.02140 1.46634 0.26236 1.09861 0.40547 45 0.13960 3.39779 2.81330 3.30112 45 - - 1.38629 1.38629 1.38629 1.38629 0.01842 4.00331 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_thirtytwo_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:08:16 2012 NSEQ 3 EFFN 3.000000 CKSUM 674843736 STATS LOCAL MSV -8.1333 0.72019 STATS LOCAL VITERBI -7.8697 0.72019 STATS LOCAL FORWARD -3.9771 0.72019 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.71592 1.26204 1.26107 1.37130 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.15719 3.27118 2.73043 3.16274 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.97980 2.52563 3.03204 0.19727 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.86982 3.47591 0.13017 3.36931 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.86982 3.47591 0.13017 3.36931 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.97980 2.52563 3.03204 0.19727 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.97980 2.52563 3.03204 0.19727 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 3.30705 0.14631 3.36166 2.73626 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.86982 3.47591 0.13017 3.36931 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.30705 0.14631 3.36166 2.73626 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 3.30705 0.14631 3.36166 2.73626 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.30705 0.14631 3.36166 2.73626 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.86982 3.47591 0.13017 3.36931 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 0.15719 3.27118 2.73043 3.16274 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.97980 2.52563 3.03204 0.19727 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.15719 3.27118 2.73043 3.16274 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.30705 0.14631 3.36166 2.73626 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.86982 3.47591 0.13017 3.36931 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 0.15719 3.27118 2.73043 3.16274 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:02:06 2012 NSEQ 183 EFFN 3.308945 CKSUM 3389557377 STATS LOCAL MSV -7.9922 0.71932 STATS LOCAL VITERBI -7.8208 0.71932 STATS LOCAL FORWARD -3.8675 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.81846 1.51995 1.19935 1.14693 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 0.00000 * 1 3.42803 0.13081 3.47770 2.82530 1 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 2 0.14248 3.37586 2.79906 3.27710 2 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 3 3.42803 0.13081 3.47770 2.82530 3 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 4 3.08416 2.59231 3.13249 0.17939 4 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 5 3.04267 2.48950 3.09234 0.19365 5 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 6 3.42803 0.13081 3.47770 2.82530 6 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 7 3.42803 0.13081 3.47770 2.82530 7 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 8 2.94445 3.58328 0.11765 3.48749 8 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 9 2.94445 3.58328 0.11765 3.48749 9 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 10 2.94445 3.58328 0.11765 3.48749 10 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 11 3.08416 2.59231 3.13249 0.17939 11 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 12 3.08416 2.59231 3.13249 0.17939 12 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 13 0.14248 3.37586 2.79906 3.27710 13 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 14 2.94445 3.58328 0.11765 3.48749 14 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 15 3.08416 2.59231 3.13249 0.17939 15 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 16 3.42803 0.13081 3.47770 2.82530 16 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 17 3.42803 0.13081 3.47770 2.82530 17 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 18 3.08416 2.59231 3.13249 0.17939 18 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 19 2.94445 3.58328 0.11765 3.48749 19 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 20 2.94445 3.58328 0.11765 3.48749 20 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 21 2.94445 3.58328 0.11765 3.48749 21 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 22 0.14248 3.37586 2.79906 3.27710 22 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 23 2.94445 3.58328 0.11765 3.48749 23 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 24 3.08416 2.59231 3.13249 0.17939 24 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 25 0.14248 3.37586 2.79906 3.27710 25 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 26 3.08416 2.59231 3.13249 0.17939 26 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 27 2.94445 3.58328 0.11765 3.48749 27 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 28 3.08416 2.59231 3.13249 0.17939 28 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 29 3.08416 2.59231 3.13249 0.17939 29 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 30 3.08416 2.59231 3.13249 0.17939 30 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 31 2.94445 3.58328 0.11765 3.48749 31 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 32 3.08416 2.59231 3.13249 0.17939 32 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 33 0.14248 3.37586 2.79906 3.27710 33 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 34 3.08416 2.59231 3.13249 0.17939 34 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 35 3.42803 0.13081 3.47770 2.82530 35 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 36 0.14248 3.37586 2.79906 3.27710 36 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 37 2.94445 3.58328 0.11765 3.48749 37 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 38 3.08416 2.59231 3.13249 0.17939 38 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 39 2.94445 3.58328 0.11765 3.48749 39 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 40 3.08416 2.59231 3.13249 0.17939 40 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 41 3.42803 0.13081 3.47770 2.82530 41 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 42 3.42803 0.13081 3.47770 2.82530 42 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 43 2.94445 3.58328 0.11765 3.48749 43 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 44 3.08416 2.59231 3.13249 0.17939 44 - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00896 4.00896 1.46634 0.26236 1.09861 0.40547 45 2.75674 3.49488 0.13627 3.39495 45 - - 1.38629 1.38629 1.38629 1.38629 0.01866 3.99064 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_twelve_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:03:56 2012 NSEQ 26 EFFN 3.322998 CKSUM 3952686333 STATS LOCAL MSV -8.0163 0.71932 STATS LOCAL VITERBI -7.8252 0.71932 STATS LOCAL FORWARD -4.0212 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.63370 1.38786 1.31856 1.24596 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 0.00000 * 1 3.43323 0.13019 3.48268 2.82908 1 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 2 0.14188 3.38036 2.80199 3.28204 2 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 3 3.43323 0.13019 3.48268 2.82908 3 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 4 3.08871 2.59521 3.13686 0.17866 4 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 5 3.08871 2.59521 3.13686 0.17866 5 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 6 3.43323 0.13019 3.48268 2.82908 6 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 7 3.43323 0.13019 3.48268 2.82908 7 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 8 2.94760 3.58786 0.11715 3.49254 8 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 9 2.94760 3.58786 0.11715 3.49254 9 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 10 2.94760 3.58786 0.11715 3.49254 10 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 11 3.08871 2.59521 3.13686 0.17866 11 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 12 3.08871 2.59521 3.13686 0.17866 12 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 13 0.14188 3.38036 2.80199 3.28204 13 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 14 3.08871 2.59521 3.13686 0.17866 14 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 15 2.94760 3.58786 0.11715 3.49254 15 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 16 3.43323 0.13019 3.48268 2.82908 16 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 17 3.43323 0.13019 3.48268 2.82908 17 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 18 3.08871 2.59521 3.13686 0.17866 18 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 19 2.94760 3.58786 0.11715 3.49254 19 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 20 2.94760 3.58786 0.11715 3.49254 20 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 21 0.14188 3.38036 2.80199 3.28204 21 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 22 0.14188 3.38036 2.80199 3.28204 22 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 23 2.94760 3.58786 0.11715 3.49254 23 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 24 3.08871 2.59521 3.13686 0.17866 24 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 25 0.14188 3.38036 2.80199 3.28204 25 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 26 3.08871 2.59521 3.13686 0.17866 26 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 27 2.94760 3.58786 0.11715 3.49254 27 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 28 2.98523 0.25393 3.04770 2.06940 28 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 29 3.43323 0.13019 3.48268 2.82908 29 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 30 3.08871 2.59521 3.13686 0.17866 30 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 31 2.94760 3.58786 0.11715 3.49254 31 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 32 3.08871 2.59521 3.13686 0.17866 32 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 33 0.14188 3.38036 2.80199 3.28204 33 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 34 3.08871 2.59521 3.13686 0.17866 34 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 35 3.43323 0.13019 3.48268 2.82908 35 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 36 0.14188 3.38036 2.80199 3.28204 36 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 37 2.94760 3.58786 0.11715 3.49254 37 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 38 3.08871 2.59521 3.13686 0.17866 38 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 39 2.94760 3.58786 0.11715 3.49254 39 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 40 3.08871 2.59521 3.13686 0.17866 40 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 41 3.43323 0.13019 3.48268 2.82908 41 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 42 3.43323 0.13019 3.48268 2.82908 42 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 43 2.94760 3.58786 0.11715 3.49254 43 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 44 3.08871 2.59521 3.13686 0.17866 44 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01151 4.01151 1.46634 0.26236 1.09861 0.40547 45 0.14188 3.38036 2.80199 3.28204 45 - - 1.38629 1.38629 1.38629 1.38629 0.01861 3.99323 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_twenty_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:05:57 2012 NSEQ 11 EFFN 3.305908 CKSUM 4182302186 STATS LOCAL MSV -8.0713 0.71931 STATS LOCAL VITERBI -7.8599 0.71931 STATS LOCAL FORWARD -4.0666 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.54970 1.52385 1.31655 1.19813 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 0.00000 * 1 3.42690 0.13095 3.47662 2.82448 1 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 2 0.14261 3.37488 2.79843 3.27603 2 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 3 3.42690 0.13095 3.47662 2.82448 3 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 4 3.08318 2.59169 3.13154 0.17955 4 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 5 3.08318 2.59169 3.13154 0.17955 5 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 6 3.08318 2.59169 3.13154 0.17955 6 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 7 3.42690 0.13095 3.47662 2.82448 7 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 8 2.94377 3.58229 0.11776 3.48639 8 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 9 2.94377 3.58229 0.11776 3.48639 9 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 10 2.94377 3.58229 0.11776 3.48639 10 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 11 3.08318 2.59169 3.13154 0.17955 11 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 12 3.08318 2.59169 3.13154 0.17955 12 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 13 0.14261 3.37488 2.79843 3.27603 13 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 14 2.94377 3.58229 0.11776 3.48639 14 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 15 0.14261 3.37488 2.79843 3.27603 15 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 16 3.42690 0.13095 3.47662 2.82448 16 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 17 3.42690 0.13095 3.47662 2.82448 17 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 18 3.08318 2.59169 3.13154 0.17955 18 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 19 2.94377 3.58229 0.11776 3.48639 19 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 20 2.94377 3.58229 0.11776 3.48639 20 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 21 0.14261 3.37488 2.79843 3.27603 21 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 22 0.14261 3.37488 2.79843 3.27603 22 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 23 2.94377 3.58229 0.11776 3.48639 23 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 24 3.08318 2.59169 3.13154 0.17955 24 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 25 0.14261 3.37488 2.79843 3.27603 25 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 26 3.08318 2.59169 3.13154 0.17955 26 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 27 2.94377 3.58229 0.11776 3.48639 27 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 28 3.08318 2.59169 3.13154 0.17955 28 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 29 3.42690 0.13095 3.47662 2.82448 29 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 30 3.08318 2.59169 3.13154 0.17955 30 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 31 2.94377 3.58229 0.11776 3.48639 31 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 32 3.08318 2.59169 3.13154 0.17955 32 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 33 0.14261 3.37488 2.79843 3.27603 33 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 34 3.08318 2.59169 3.13154 0.17955 34 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 35 3.42690 0.13095 3.47662 2.82448 35 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 36 0.14261 3.37488 2.79843 3.27603 36 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 37 2.94377 3.58229 0.11776 3.48639 37 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 38 3.08318 2.59169 3.13154 0.17955 38 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 39 2.94377 3.58229 0.11776 3.48639 39 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 40 3.08318 2.59169 3.13154 0.17955 40 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 41 3.42690 0.13095 3.47662 2.82448 41 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 42 3.42690 0.13095 3.47662 2.82448 42 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 43 2.94377 3.58229 0.11776 3.48639 43 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 44 3.08318 2.59169 3.13154 0.17955 44 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00841 4.00841 1.46634 0.26236 1.09861 0.40547 45 0.14261 3.37488 2.79843 3.27603 45 - - 1.38629 1.38629 1.38629 1.38629 0.01867 3.99008 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_twentyeight_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:07:41 2012 NSEQ 14 EFFN 3.394043 CKSUM 293271894 STATS LOCAL MSV -7.3677 0.71932 STATS LOCAL VITERBI -7.7536 0.71932 STATS LOCAL FORWARD -3.9629 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.69978 1.37432 1.28686 1.24435 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 0.00000 * 1 3.45911 0.12715 3.50746 2.84789 1 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 2 0.13895 3.40284 2.81657 3.30665 2 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 3 3.45911 0.12715 3.50746 2.84789 3 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 4 3.11146 2.60966 3.15874 0.17504 4 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 5 3.11146 2.60966 3.15874 0.17504 5 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 6 3.45911 0.12715 3.50746 2.84789 6 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 7 3.45911 0.12715 3.50746 2.84789 7 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 8 2.96321 3.61061 0.11469 3.51767 8 - - 1.38629 1.38629 1.38629 1.38629 0.12979 4.02429 2.26489 1.46634 0.26236 1.09861 0.40547 9 2.84680 3.44327 0.13428 3.33352 9 - - 1.38629 1.38629 1.38629 1.38629 0.03990 3.93440 3.93440 1.46634 0.26236 0.29587 1.36212 10 2.96321 3.61061 0.11469 3.51767 10 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 11 3.11146 2.60966 3.15874 0.17504 11 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 12 3.11146 2.60966 3.15874 0.17504 12 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 13 0.13895 3.40284 2.81657 3.30665 13 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 14 2.96321 3.61061 0.11469 3.51767 14 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 15 3.11146 2.60966 3.15874 0.17504 15 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 16 3.45911 0.12715 3.50746 2.84789 16 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 17 3.45911 0.12715 3.50746 2.84789 17 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 18 3.11146 2.60966 3.15874 0.17504 18 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 19 2.96321 3.61061 0.11469 3.51767 19 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 20 2.96321 3.61061 0.11469 3.51767 20 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 21 1.27629 2.63263 0.56893 2.49000 21 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 22 0.13895 3.40284 2.81657 3.30665 22 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 23 2.96321 3.61061 0.11469 3.51767 23 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 24 3.11146 2.60966 3.15874 0.17504 24 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 25 0.13895 3.40284 2.81657 3.30665 25 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 26 3.11146 2.60966 3.15874 0.17504 26 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 27 2.96321 3.61061 0.11469 3.51767 27 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 28 3.45911 0.12715 3.50746 2.84789 28 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 29 3.45911 0.12715 3.50746 2.84789 29 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 30 3.11146 2.60966 3.15874 0.17504 30 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 31 2.96321 3.61061 0.11469 3.51767 31 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 32 3.11146 2.60966 3.15874 0.17504 32 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 33 0.13895 3.40284 2.81657 3.30665 33 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 34 3.11146 2.60966 3.15874 0.17504 34 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 35 3.45911 0.12715 3.50746 2.84789 35 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 36 0.13895 3.40284 2.81657 3.30665 36 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 37 2.96321 3.61061 0.11469 3.51767 37 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 38 3.11146 2.60966 3.15874 0.17504 38 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 39 2.96321 3.61061 0.11469 3.51767 39 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 40 3.11146 2.60966 3.15874 0.17504 40 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 41 3.45911 0.12715 3.50746 2.84789 41 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 42 3.45911 0.12715 3.50746 2.84789 42 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 43 2.96321 3.61061 0.11469 3.51767 43 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 44 3.11146 2.60966 3.15874 0.17504 44 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02429 4.02429 1.46634 0.26236 1.09861 0.40547 45 0.13895 3.40284 2.81657 3.30665 45 - - 1.38629 1.38629 1.38629 1.38629 0.01837 4.00625 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_twentyfive_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:07:06 2012 NSEQ 75 EFFN 3.364563 CKSUM 324606330 STATS LOCAL MSV -8.1203 0.71931 STATS LOCAL VITERBI -7.8811 0.71931 STATS LOCAL FORWARD -4.0462 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.55089 1.44302 1.39216 1.19340 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 0.00000 * 1 3.44845 0.12839 3.49725 2.84015 1 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 2 0.14015 3.39358 2.81057 3.29651 2 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 3 3.44845 0.12839 3.49725 2.84015 3 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 4 3.10207 2.60370 3.14971 0.17652 4 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 5 3.10207 2.60370 3.14971 0.17652 5 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 6 3.10207 2.60370 3.14971 0.17652 6 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 7 3.44845 0.12839 3.49725 2.84015 7 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 8 2.95679 3.60125 0.11569 3.50732 8 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 9 2.95679 3.60125 0.11569 3.50732 9 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 10 2.95679 3.60125 0.11569 3.50732 10 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 11 3.10207 2.60370 3.14971 0.17652 11 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 12 3.10207 2.60370 3.14971 0.17652 12 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 13 0.14015 3.39358 2.81057 3.29651 13 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 14 3.10207 2.60370 3.14971 0.17652 14 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 15 2.66646 2.59325 0.22085 2.92086 15 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 16 3.44845 0.12839 3.49725 2.84015 16 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 17 3.44845 0.12839 3.49725 2.84015 17 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 18 3.10207 2.60370 3.14971 0.17652 18 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 19 2.95679 3.60125 0.11569 3.50732 19 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 20 2.95679 3.60125 0.11569 3.50732 20 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 21 0.14015 3.39358 2.81057 3.29651 21 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 22 0.14015 3.39358 2.81057 3.29651 22 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 23 2.95679 3.60125 0.11569 3.50732 23 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 24 3.10207 2.60370 3.14971 0.17652 24 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 25 0.14015 3.39358 2.81057 3.29651 25 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 26 3.10207 2.60370 3.14971 0.17652 26 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 27 2.95679 3.60125 0.11569 3.50732 27 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 28 3.44845 0.12839 3.49725 2.84015 28 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 29 3.44845 0.12839 3.49725 2.84015 29 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 30 3.10207 2.60370 3.14971 0.17652 30 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 31 2.95679 3.60125 0.11569 3.50732 31 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 32 3.10207 2.60370 3.14971 0.17652 32 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 33 0.14015 3.39358 2.81057 3.29651 33 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 34 3.10207 2.60370 3.14971 0.17652 34 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 35 3.44845 0.12839 3.49725 2.84015 35 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 36 0.14015 3.39358 2.81057 3.29651 36 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 37 2.95679 3.60125 0.11569 3.50732 37 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 38 3.10207 2.60370 3.14971 0.17652 38 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 39 2.95679 3.60125 0.11569 3.50732 39 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 40 3.10207 2.60370 3.14971 0.17652 40 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 41 3.44845 0.12839 3.49725 2.84015 41 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 42 3.44845 0.12839 3.49725 2.84015 42 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 43 0.14015 3.39358 2.81057 3.29651 43 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 44 3.10207 2.60370 3.14971 0.17652 44 - - 1.38629 1.38629 1.38629 1.38629 0.03660 4.01900 4.01900 1.46634 0.26236 1.09861 0.40547 45 0.14015 3.39358 2.81057 3.29651 45 - - 1.38629 1.38629 1.38629 1.38629 0.01847 4.00087 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_twentyfour_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:06:56 2012 NSEQ 21 EFFN 3.299194 CKSUM 3016585621 STATS LOCAL MSV -8.1081 0.71931 STATS LOCAL VITERBI -7.7712 0.71931 STATS LOCAL FORWARD -4.2342 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.63365 1.44741 1.31884 1.19680 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 0.00000 * 1 3.42441 0.13125 3.47423 2.82266 1 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 2 0.14290 3.37271 2.79702 3.27366 2 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 3 3.42441 0.13125 3.47423 2.82266 3 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 4 3.08100 2.59030 3.12944 0.17991 4 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 5 3.08100 2.59030 3.12944 0.17991 5 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 6 3.08100 2.59030 3.12944 0.17991 6 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 7 3.42441 0.13125 3.47423 2.82266 7 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 8 2.94226 3.58009 0.11800 3.48397 8 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 9 2.94226 3.58009 0.11800 3.48397 9 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 10 2.94226 3.58009 0.11800 3.48397 10 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 11 3.08100 2.59030 3.12944 0.17991 11 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 12 3.08100 2.59030 3.12944 0.17991 12 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 13 0.14290 3.37271 2.79702 3.27366 13 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 14 3.42441 0.13125 3.47423 2.82266 14 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 15 2.94226 3.58009 0.11800 3.48397 15 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 16 3.42441 0.13125 3.47423 2.82266 16 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 17 3.42441 0.13125 3.47423 2.82266 17 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 18 3.08100 2.59030 3.12944 0.17991 18 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 19 2.94226 3.58009 0.11800 3.48397 19 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 20 2.94226 3.58009 0.11800 3.48397 20 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 21 0.14290 3.37271 2.79702 3.27366 21 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 22 0.14290 3.37271 2.79702 3.27366 22 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 23 2.94226 3.58009 0.11800 3.48397 23 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 24 3.08100 2.59030 3.12944 0.17991 24 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 25 0.14290 3.37271 2.79702 3.27366 25 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 26 3.08100 2.59030 3.12944 0.17991 26 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 27 2.94226 3.58009 0.11800 3.48397 27 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 28 3.08100 2.59030 3.12944 0.17991 28 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 29 3.42441 0.13125 3.47423 2.82266 29 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 30 3.08100 2.59030 3.12944 0.17991 30 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 31 2.94226 3.58009 0.11800 3.48397 31 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 32 3.08100 2.59030 3.12944 0.17991 32 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 33 0.14290 3.37271 2.79702 3.27366 33 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 34 3.08100 2.59030 3.12944 0.17991 34 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 35 3.42441 0.13125 3.47423 2.82266 35 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 36 0.14290 3.37271 2.79702 3.27366 36 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 37 2.94226 3.58009 0.11800 3.48397 37 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 38 3.08100 2.59030 3.12944 0.17991 38 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 39 2.94226 3.58009 0.11800 3.48397 39 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 40 3.08100 2.59030 3.12944 0.17991 40 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 41 3.42441 0.13125 3.47423 2.82266 41 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 42 3.42441 0.13125 3.47423 2.82266 42 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 43 2.94226 3.58009 0.11800 3.48397 43 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 44 3.08100 2.59030 3.12944 0.17991 44 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00719 4.00719 1.46634 0.26236 1.09861 0.40547 45 0.14290 3.37271 2.79702 3.27366 45 - - 1.38629 1.38629 1.38629 1.38629 0.01869 3.98883 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_twentynine_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:07:52 2012 NSEQ 4 EFFN 3.253906 CKSUM 2374311045 STATS LOCAL MSV -8.1024 0.71931 STATS LOCAL VITERBI -7.7728 0.71931 STATS LOCAL FORWARD -4.2920 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.63428 1.31762 1.32060 1.30874 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 0.00000 * 1 0.14487 3.35799 2.78743 3.25755 1 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 2 3.40742 0.13331 3.45796 2.81026 2 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 3 3.06618 2.58087 3.11519 0.18233 3 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 4 3.40742 0.13331 3.45796 2.81026 4 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 5 3.40742 0.13331 3.45796 2.81026 5 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 6 3.06618 2.58087 3.11519 0.18233 6 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 7 2.93193 3.56511 0.11967 3.46744 7 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 8 2.93193 3.56511 0.11967 3.46744 8 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 9 2.93193 3.56511 0.11967 3.46744 9 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 10 3.06618 2.58087 3.11519 0.18233 10 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 11 3.06618 2.58087 3.11519 0.18233 11 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 12 3.40742 0.13331 3.45796 2.81026 12 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 13 0.14487 3.35799 2.78743 3.25755 13 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 14 2.93193 3.56511 0.11967 3.46744 14 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 15 3.40742 0.13331 3.45796 2.81026 15 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 16 3.40742 0.13331 3.45796 2.81026 16 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 17 3.06618 2.58087 3.11519 0.18233 17 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 18 3.40742 0.13331 3.45796 2.81026 18 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 19 0.14487 3.35799 2.78743 3.25755 19 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 20 2.93193 3.56511 0.11967 3.46744 20 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 21 2.93193 3.56511 0.11967 3.46744 21 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 22 0.14487 3.35799 2.78743 3.25755 22 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 23 2.93193 3.56511 0.11967 3.46744 23 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 24 3.06618 2.58087 3.11519 0.18233 24 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 25 0.14487 3.35799 2.78743 3.25755 25 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 26 3.06618 2.58087 3.11519 0.18233 26 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 27 2.93193 3.56511 0.11967 3.46744 27 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 28 3.40742 0.13331 3.45796 2.81026 28 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 29 3.40742 0.13331 3.45796 2.81026 29 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 30 3.06618 2.58087 3.11519 0.18233 30 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 31 2.93193 3.56511 0.11967 3.46744 31 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 32 3.06618 2.58087 3.11519 0.18233 32 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 33 0.14487 3.35799 2.78743 3.25755 33 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 34 3.06618 2.58087 3.11519 0.18233 34 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 35 3.40742 0.13331 3.45796 2.81026 35 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 36 0.14487 3.35799 2.78743 3.25755 36 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 37 2.93193 3.56511 0.11967 3.46744 37 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 38 3.06618 2.58087 3.11519 0.18233 38 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 39 2.93193 3.56511 0.11967 3.46744 39 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 40 3.06618 2.58087 3.11519 0.18233 40 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 41 3.40742 0.13331 3.45796 2.81026 41 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 42 3.40742 0.13331 3.45796 2.81026 42 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 43 2.93193 3.56511 0.11967 3.46744 43 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 44 3.06618 2.58087 3.11519 0.18233 44 - - 1.38629 1.38629 1.38629 1.38629 0.03736 3.99892 3.99892 1.46634 0.26236 1.09861 0.40547 45 0.14487 3.35799 2.78743 3.25755 45 - - 1.38629 1.38629 1.38629 1.38629 0.01885 3.98041 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_twentyone_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:06:07 2012 NSEQ 7 EFFN 3.298340 CKSUM 246655704 STATS LOCAL MSV -8.1183 0.71932 STATS LOCAL VITERBI -7.9257 0.71932 STATS LOCAL FORWARD -4.0205 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.63363 1.44741 1.31884 1.19681 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 0.00000 * 1 3.42409 0.13129 3.47393 2.82243 1 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 2 0.14293 3.37244 2.79684 3.27336 2 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 3 3.42409 0.13129 3.47393 2.82243 3 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 4 3.08072 2.59012 3.12917 0.17995 4 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 5 3.08072 2.59012 3.12917 0.17995 5 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 6 3.08072 2.59012 3.12917 0.17995 6 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 7 3.42409 0.13129 3.47393 2.82243 7 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 8 2.94206 3.57981 0.11803 3.48366 8 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 9 2.94206 3.57981 0.11803 3.48366 9 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 10 2.94206 3.57981 0.11803 3.48366 10 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 11 3.08072 2.59012 3.12917 0.17995 11 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 12 3.08072 2.59012 3.12917 0.17995 12 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 13 0.14293 3.37244 2.79684 3.27336 13 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 14 3.08072 2.59012 3.12917 0.17995 14 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 15 2.94206 3.57981 0.11803 3.48366 15 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 16 3.42409 0.13129 3.47393 2.82243 16 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 17 3.42409 0.13129 3.47393 2.82243 17 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 18 3.08072 2.59012 3.12917 0.17995 18 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 19 2.94206 3.57981 0.11803 3.48366 19 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 20 2.94206 3.57981 0.11803 3.48366 20 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 21 0.14293 3.37244 2.79684 3.27336 21 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 22 0.14293 3.37244 2.79684 3.27336 22 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 23 2.94206 3.57981 0.11803 3.48366 23 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 24 3.08072 2.59012 3.12917 0.17995 24 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 25 0.14293 3.37244 2.79684 3.27336 25 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 26 3.08072 2.59012 3.12917 0.17995 26 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 27 2.94206 3.57981 0.11803 3.48366 27 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 28 3.42409 0.13129 3.47393 2.82243 28 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 29 3.42409 0.13129 3.47393 2.82243 29 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 30 3.08072 2.59012 3.12917 0.17995 30 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 31 2.94206 3.57981 0.11803 3.48366 31 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 32 3.08072 2.59012 3.12917 0.17995 32 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 33 0.14293 3.37244 2.79684 3.27336 33 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 34 3.08072 2.59012 3.12917 0.17995 34 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 35 3.42409 0.13129 3.47393 2.82243 35 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 36 0.14293 3.37244 2.79684 3.27336 36 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 37 2.94206 3.57981 0.11803 3.48366 37 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 38 3.08072 2.59012 3.12917 0.17995 38 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 39 2.94206 3.57981 0.11803 3.48366 39 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 40 3.08072 2.59012 3.12917 0.17995 40 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 41 3.42409 0.13129 3.47393 2.82243 41 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 42 3.42409 0.13129 3.47393 2.82243 42 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 43 2.94206 3.57981 0.11803 3.48366 43 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 44 3.08072 2.59012 3.12917 0.17995 44 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 45 0.14293 3.37244 2.79684 3.27336 45 - - 1.38629 1.38629 1.38629 1.38629 0.01870 3.98868 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_twentyseven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:07:27 2012 NSEQ 90 EFFN 3.331604 CKSUM 115872449 STATS LOCAL MSV -8.0842 0.71933 STATS LOCAL VITERBI -7.7337 0.71933 STATS LOCAL FORWARD -3.8434 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.55075 1.51971 1.38361 1.14425 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 0.00000 * 1 3.43640 0.12982 3.48571 2.83139 1 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 2 0.14152 3.38312 2.80378 3.28505 2 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 3 3.43640 0.12982 3.48571 2.83139 3 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 4 3.09149 2.59697 3.13953 0.17821 4 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 5 3.09149 2.59697 3.13953 0.17821 5 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 6 3.09149 2.59697 3.13953 0.17821 6 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 7 3.43640 0.12982 3.48571 2.83139 7 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 8 2.94952 3.59065 0.11684 3.49562 8 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 9 2.94952 3.59065 0.11684 3.49562 9 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 10 2.94952 3.59065 0.11684 3.49562 10 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 11 0.14152 3.38312 2.80378 3.28505 11 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 12 3.09149 2.59697 3.13953 0.17821 12 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 13 0.14152 3.38312 2.80378 3.28505 13 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 14 3.09149 2.59697 3.13953 0.17821 14 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 15 3.09149 2.59697 3.13953 0.17821 15 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 16 3.43640 0.12982 3.48571 2.83139 16 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 17 3.43640 0.12982 3.48571 2.83139 17 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 18 3.09149 2.59697 3.13953 0.17821 18 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 19 2.94952 3.59065 0.11684 3.49562 19 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 20 2.94952 3.59065 0.11684 3.49562 20 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 21 0.14152 3.38312 2.80378 3.28505 21 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 22 0.14152 3.38312 2.80378 3.28505 22 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 23 2.94952 3.59065 0.11684 3.49562 23 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 24 3.09149 2.59697 3.13953 0.17821 24 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 25 0.14152 3.38312 2.80378 3.28505 25 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 26 3.09149 2.59697 3.13953 0.17821 26 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 27 2.94952 3.59065 0.11684 3.49562 27 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 28 3.43640 0.12982 3.48571 2.83139 28 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 29 3.09149 2.59697 3.13953 0.17821 29 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 30 3.09149 2.59697 3.13953 0.17821 30 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 31 2.94952 3.59065 0.11684 3.49562 31 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 32 3.09149 2.59697 3.13953 0.17821 32 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 33 0.14152 3.38312 2.80378 3.28505 33 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 34 3.09149 2.59697 3.13953 0.17821 34 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 35 3.43640 0.12982 3.48571 2.83139 35 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 36 0.14152 3.38312 2.80378 3.28505 36 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 37 2.94952 3.59065 0.11684 3.49562 37 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 38 3.09149 2.59697 3.13953 0.17821 38 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 39 2.94952 3.59065 0.11684 3.49562 39 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 40 3.09149 2.59697 3.13953 0.17821 40 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 41 3.43640 0.12982 3.48571 2.83139 41 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 42 3.43640 0.12982 3.48571 2.83139 42 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 43 2.94952 3.59065 0.11684 3.49562 43 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 44 3.09149 2.59697 3.13953 0.17821 44 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01306 4.01306 1.46634 0.26236 1.09861 0.40547 45 0.14152 3.38312 2.80378 3.28505 45 - - 1.38629 1.38629 1.38629 1.38629 0.01858 3.99482 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_twentysix_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:07:17 2012 NSEQ 13 EFFN 3.418213 CKSUM 2570419389 STATS LOCAL MSV -7.4116 0.71933 STATS LOCAL VITERBI -7.6858 0.71933 STATS LOCAL FORWARD -3.9853 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.71992 1.35545 1.29332 1.24226 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 0.00000 * 1 3.46776 0.12615 3.51574 2.85416 1 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 2 0.13798 3.41037 2.82144 3.31490 2 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 3 3.46776 0.12615 3.51574 2.85416 3 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 4 3.11910 2.61452 3.16608 0.17384 4 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 5 3.11910 2.61452 3.16608 0.17384 5 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 6 3.46776 0.12615 3.51574 2.85416 6 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 7 3.46776 0.12615 3.51574 2.85416 7 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 8 2.96841 3.61821 0.11388 3.52606 8 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 9 2.96841 3.61821 0.11388 3.52606 9 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 10 2.96841 3.61821 0.11388 3.52606 10 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 11 3.11910 2.61452 3.16608 0.17384 11 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 12 3.11910 2.61452 3.16608 0.17384 12 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 13 0.13798 3.41037 2.82144 3.31490 13 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 14 3.11910 2.61452 3.16608 0.17384 14 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 15 2.07897 1.10844 0.88982 2.00889 15 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 16 3.46776 0.12615 3.51574 2.85416 16 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 17 3.46776 0.12615 3.51574 2.85416 17 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 18 3.11910 2.61452 3.16608 0.17384 18 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 19 2.96841 3.61821 0.11388 3.52606 19 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 20 2.96841 3.61821 0.11388 3.52606 20 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 21 2.96841 3.61821 0.11388 3.52606 21 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 22 0.13798 3.41037 2.82144 3.31490 22 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 23 2.96841 3.61821 0.11388 3.52606 23 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 24 3.11910 2.61452 3.16608 0.17384 24 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 25 0.13798 3.41037 2.82144 3.31490 25 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 26 3.11910 2.61452 3.16608 0.17384 26 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 27 2.96841 3.61821 0.11388 3.52606 27 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 28 3.46776 0.12615 3.51574 2.85416 28 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 29 3.46776 0.12615 3.51574 2.85416 29 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 30 3.11910 2.61452 3.16608 0.17384 30 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 31 2.96841 3.61821 0.11388 3.52606 31 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 32 3.11910 2.61452 3.16608 0.17384 32 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 33 0.13798 3.41037 2.82144 3.31490 33 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 34 3.11910 2.61452 3.16608 0.17384 34 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 35 3.46776 0.12615 3.51574 2.85416 35 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 36 0.13798 3.41037 2.82144 3.31490 36 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 37 2.96841 3.61821 0.11388 3.52606 37 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 38 3.11910 2.61452 3.16608 0.17384 38 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 39 2.96841 3.61821 0.11388 3.52606 39 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 40 3.11910 2.61452 3.16608 0.17384 40 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 41 3.46776 0.12615 3.51574 2.85416 41 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 42 3.46776 0.12615 3.51574 2.85416 42 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 43 2.96841 3.61821 0.11388 3.52606 43 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 44 3.11910 2.61452 3.16608 0.17384 44 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02860 4.02860 1.46634 0.26236 1.09861 0.40547 45 0.13798 3.41037 2.82144 3.31490 45 - - 1.38629 1.38629 1.38629 1.38629 0.01829 4.01064 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_twentythreea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:06:37 2012 NSEQ 2 EFFN 2.000000 CKSUM 3990132220 STATS LOCAL MSV -7.2795 0.72829 STATS LOCAL VITERBI -8.2147 0.72829 STATS LOCAL FORWARD -3.3678 0.72829 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.52092 1.38736 1.37824 1.27392 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.53331 3.02441 0.20344 2.88069 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_twentythreeb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:06:43 2012 NSEQ 2 EFFN 2.000000 CKSUM 1038123167 STATS LOCAL MSV -7.5283 0.72812 STATS LOCAL VITERBI -8.2416 0.72812 STATS LOCAL FORWARD -3.4773 0.72812 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.66011 1.38886 1.26865 1.27544 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.53331 3.02441 0.20344 2.88069 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_twentytwo_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:06:18 2012 NSEQ 26 EFFN 3.246826 CKSUM 2755268631 STATS LOCAL MSV -8.1324 0.71931 STATS LOCAL VITERBI -7.6607 0.71931 STATS LOCAL FORWARD -4.1374 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.63309 1.38346 1.25712 1.31121 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 0.00000 * 1 3.40474 0.13364 3.45540 2.80830 1 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 2 0.14519 3.35567 2.78592 3.25501 2 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 3 3.40474 0.13364 3.45540 2.80830 3 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 4 3.06385 2.57938 3.11295 0.18272 4 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 5 3.06385 2.57938 3.11295 0.18272 5 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 6 3.40474 0.13364 3.45540 2.80830 6 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 7 3.40474 0.13364 3.45540 2.80830 7 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 8 2.93029 3.56274 0.11993 3.46483 8 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 9 2.93029 3.56274 0.11993 3.46483 9 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 10 2.93029 3.56274 0.11993 3.46483 10 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 11 3.06385 2.57938 3.11295 0.18272 11 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 12 3.06385 2.57938 3.11295 0.18272 12 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 13 0.14519 3.35567 2.78592 3.25501 13 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 14 0.14519 3.35567 2.78592 3.25501 14 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 15 2.93029 3.56274 0.11993 3.46483 15 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 16 3.40474 0.13364 3.45540 2.80830 16 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 17 3.40474 0.13364 3.45540 2.80830 17 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 18 3.06385 2.57938 3.11295 0.18272 18 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 19 2.93029 3.56274 0.11993 3.46483 19 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 20 2.93029 3.56274 0.11993 3.46483 20 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 21 2.93029 3.56274 0.11993 3.46483 21 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 22 0.14519 3.35567 2.78592 3.25501 22 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 23 2.93029 3.56274 0.11993 3.46483 23 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 24 3.06385 2.57938 3.11295 0.18272 24 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 25 0.14519 3.35567 2.78592 3.25501 25 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 26 3.06385 2.57938 3.11295 0.18272 26 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 27 2.93029 3.56274 0.11993 3.46483 27 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 28 3.40474 0.13364 3.45540 2.80830 28 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 29 3.40474 0.13364 3.45540 2.80830 29 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 30 3.06385 2.57938 3.11295 0.18272 30 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 31 2.93029 3.56274 0.11993 3.46483 31 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 32 3.06385 2.57938 3.11295 0.18272 32 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 33 0.14519 3.35567 2.78592 3.25501 33 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 34 3.06385 2.57938 3.11295 0.18272 34 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 35 3.40474 0.13364 3.45540 2.80830 35 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 36 0.14519 3.35567 2.78592 3.25501 36 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 37 2.93029 3.56274 0.11993 3.46483 37 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 38 3.06385 2.57938 3.11295 0.18272 38 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 39 2.93029 3.56274 0.11993 3.46483 39 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 40 3.06385 2.57938 3.11295 0.18272 40 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 41 3.40474 0.13364 3.45540 2.80830 41 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 42 3.40474 0.13364 3.45540 2.80830 42 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 43 2.93029 3.56274 0.11993 3.46483 43 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 44 3.06385 2.57938 3.11295 0.18272 44 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99762 3.99762 1.46634 0.26236 1.09861 0.40547 45 0.14519 3.35567 2.78592 3.25501 45 - - 1.38629 1.38629 1.38629 1.38629 0.01888 3.97909 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Oomycota_58S_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Mon Jan 23 23:01:59 2012 NSEQ 57 EFFN 3.336365 CKSUM 3639722455 STATS LOCAL MSV -8.0140 0.71933 STATS LOCAL VITERBI -7.9301 0.71933 STATS LOCAL FORWARD -3.8991 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72359 1.51656 1.31924 1.09431 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 0.00000 * 1 3.43814 0.12961 3.48739 2.83266 1 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 2 0.14132 3.38463 2.80476 3.28671 2 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 3 3.43814 0.12961 3.48739 2.83266 3 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 4 3.09302 2.59795 3.14101 0.17797 4 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 5 3.09302 2.59795 3.14101 0.17797 5 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 6 3.09302 2.59795 3.14101 0.17797 6 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 7 3.43814 0.12961 3.48739 2.83266 7 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 8 2.95057 3.59219 0.11668 3.49732 8 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 9 2.95057 3.59219 0.11668 3.49732 9 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 10 2.95057 3.59219 0.11668 3.49732 10 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 11 3.09302 2.59795 3.14101 0.17797 11 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 12 3.09302 2.59795 3.14101 0.17797 12 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 13 0.14132 3.38463 2.80476 3.28671 13 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 14 2.95057 3.59219 0.11668 3.49732 14 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 15 3.09302 2.59795 3.14101 0.17797 15 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 16 3.43814 0.12961 3.48739 2.83266 16 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 17 3.43814 0.12961 3.48739 2.83266 17 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 18 3.09302 2.59795 3.14101 0.17797 18 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 19 2.95057 3.59219 0.11668 3.49732 19 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 20 2.95057 3.59219 0.11668 3.49732 20 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 21 0.14132 3.38463 2.80476 3.28671 21 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 22 0.14132 3.38463 2.80476 3.28671 22 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 23 2.95057 3.59219 0.11668 3.49732 23 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 24 3.09302 2.59795 3.14101 0.17797 24 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 25 0.14132 3.38463 2.80476 3.28671 25 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 26 3.09302 2.59795 3.14101 0.17797 26 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 27 2.95057 3.59219 0.11668 3.49732 27 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 28 3.09302 2.59795 3.14101 0.17797 28 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 29 3.43814 0.12961 3.48739 2.83266 29 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 30 3.09302 2.59795 3.14101 0.17797 30 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 31 2.95057 3.59219 0.11668 3.49732 31 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 32 3.09302 2.59795 3.14101 0.17797 32 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 33 0.14132 3.38463 2.80476 3.28671 33 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 34 3.09302 2.59795 3.14101 0.17797 34 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 35 3.43814 0.12961 3.48739 2.83266 35 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 36 0.14132 3.38463 2.80476 3.28671 36 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 37 2.95057 3.59219 0.11668 3.49732 37 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 38 3.09302 2.59795 3.14101 0.17797 38 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 39 2.95057 3.59219 0.11668 3.49732 39 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 40 3.09302 2.59795 3.14101 0.17797 40 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 41 3.43814 0.12961 3.48739 2.83266 41 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 42 3.43814 0.12961 3.48739 2.83266 42 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 43 2.95057 3.59219 0.11668 3.49732 43 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 44 3.09302 2.59795 3.14101 0.17797 44 - - 1.38629 1.38629 1.38629 1.38629 0.03679 4.01392 4.01392 1.46634 0.26236 1.09861 0.40547 45 3.09302 2.59795 3.14101 0.17797 45 - - 1.38629 1.38629 1.38629 1.38629 0.01857 3.99570 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Oomycota_58S_start_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 21 16:23:27 2012 NSEQ 5114 EFFN 3.418840 CKSUM 239509203 STATS LOCAL MSV -7.6678 0.71932 STATS LOCAL VITERBI -7.5309 0.71932 STATS LOCAL FORWARD -4.1743 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27860 1.38869 1.38454 1.50628 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 0.00000 * 1 3.07999 0.15785 3.32136 2.74956 1 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 2 0.13796 3.41057 2.82158 3.31513 2 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 3 0.13796 3.41057 2.82158 3.31513 3 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 4 3.46800 0.12612 3.51597 2.85433 4 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 5 3.11931 2.61465 3.16629 0.17381 5 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 6 3.11931 2.61465 3.16629 0.17381 6 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 7 3.11931 2.61465 3.16629 0.17381 7 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 8 3.46800 0.12612 3.51597 2.85433 8 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 9 0.13796 3.41057 2.82158 3.31513 9 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 10 2.30238 3.12456 0.21093 3.07504 10 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 11 3.46800 0.12612 3.51597 2.85433 11 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 12 0.14638 3.37765 2.74188 3.28091 12 - - 1.38629 1.38629 1.38629 1.38629 0.03634 4.02872 4.02329 1.46634 0.26236 1.09861 0.40547 13 2.96844 3.61825 0.11388 3.52611 13 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02862 4.02862 1.46634 0.26236 1.09500 0.40728 14 3.11931 2.61465 3.16629 0.17381 14 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 15 2.96856 3.61842 0.11386 3.52630 15 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 16 2.96856 3.61842 0.11386 3.52630 16 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 17 0.13796 3.41057 2.82158 3.31513 17 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 18 3.11931 2.61465 3.16629 0.17381 18 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 19 2.96856 3.61842 0.11386 3.52630 19 - - 1.38629 1.38629 1.38629 1.38629 0.03634 4.02872 4.02329 1.46634 0.26236 1.09861 0.40547 20 3.11914 2.61454 3.16612 0.17383 20 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02862 4.02862 1.46634 0.26236 1.09500 0.40728 21 3.37401 0.13987 3.32703 2.80717 21 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 22 3.11931 2.61465 3.16629 0.17381 22 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 23 0.16908 3.10776 2.74696 3.06335 23 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 24 2.96856 3.61842 0.11386 3.52630 24 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 25 2.96856 3.61842 0.11386 3.52630 25 - - 1.38629 1.38629 1.38629 1.38629 0.03644 4.02872 4.01789 1.46634 0.26236 1.09861 0.40547 26 3.46762 0.12617 3.51560 2.85405 26 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02852 4.02852 1.46634 0.26236 1.09141 0.40909 27 3.11931 2.61465 3.16629 0.17381 27 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 28 3.46800 0.12612 3.51597 2.85433 28 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 29 2.90845 3.33547 0.13232 3.38795 29 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 30 3.46800 0.12612 3.51597 2.85433 30 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 31 0.18894 3.05008 2.65115 2.91442 31 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 32 3.46800 0.12612 3.51597 2.85433 32 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 33 0.15609 3.17750 2.77808 3.20235 33 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 34 3.00786 2.34737 3.05892 0.21314 34 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 35 3.27541 0.14023 3.42390 2.80591 35 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 36 2.96856 3.61842 0.11386 3.52630 36 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 37 0.13796 3.41057 2.82158 3.31513 37 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 38 3.11931 2.61465 3.16629 0.17381 38 - - 1.38629 1.38629 1.38629 1.38629 0.03655 4.02872 4.01245 1.46634 0.26236 1.09861 0.40547 39 2.85717 3.56849 0.12400 3.47405 39 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02843 4.02843 1.46634 0.26236 1.08780 0.41092 40 0.15390 3.34924 2.67664 3.25104 40 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 41 0.13796 3.41057 2.82158 3.31513 41 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02872 4.01774 1.46634 0.26236 1.09861 0.40547 42 2.82175 3.55190 0.12751 3.45653 42 - - 1.38629 1.38629 1.38629 1.38629 0.03625 4.02852 4.02852 1.46634 0.26236 1.09131 0.40914 43 0.15287 3.35306 2.68523 3.25507 43 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 44 0.17216 3.12078 2.64919 3.13894 44 - - 1.38629 1.38629 1.38629 1.38629 0.03624 4.02872 4.02872 1.46634 0.26236 1.09861 0.40547 45 3.46800 0.12612 3.51597 2.85433 45 - - 1.38629 1.38629 1.38629 1.38629 0.01829 4.01076 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Oomycota_4_LSU_start_eight_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Tue Jan 24 11:03:30 2012 NSEQ 3 EFFN 3.000000 CKSUM 243398462 STATS LOCAL MSV -7.8088 0.72045 STATS LOCAL VITERBI -7.7580 0.72045 STATS LOCAL FORWARD -4.0808 0.72045 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.11500 1.46208 1.59571 1.43731 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.15719 3.27118 2.73043 3.16274 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.97980 2.52563 3.03204 0.19727 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.97980 2.52563 3.03204 0.19727 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.86982 3.47591 0.13017 3.36931 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.97980 2.52563 3.03204 0.19727 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.30705 0.14631 3.36166 2.73626 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.15719 3.27118 2.73043 3.16274 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.15719 3.27118 2.73043 3.16274 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.97980 2.52563 3.03204 0.19727 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.15719 3.27118 2.73043 3.16274 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.15719 3.27118 2.73043 3.16274 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.97980 2.52563 3.03204 0.19727 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.15719 3.27118 2.73043 3.16274 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.86982 3.47591 0.13017 3.36931 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.15719 3.27118 2.73043 3.16274 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 3.30705 0.14631 3.36166 2.73626 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.97980 2.52563 3.03204 0.19727 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.86982 3.47591 0.13017 3.36931 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.30705 0.14631 3.36166 2.73626 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 0.15719 3.27118 2.73043 3.16274 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Oomycota_4_LSU_start_eleven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Tue Jan 24 11:03:58 2012 NSEQ 18 EFFN 3.247559 CKSUM 2515016115 STATS LOCAL MSV -7.9395 0.71933 STATS LOCAL VITERBI -7.5658 0.71933 STATS LOCAL FORWARD -4.1596 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.10884 1.46713 1.51997 1.51071 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 0.00000 * 1 0.14515 3.35591 2.78608 3.25528 1 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 2 0.14515 3.35591 2.78608 3.25528 2 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 3 3.06409 2.57953 3.11318 0.18268 3 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 4 2.93046 3.56298 0.11991 3.46510 4 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 5 2.93046 3.56298 0.11991 3.46510 5 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 6 0.14515 3.35591 2.78608 3.25528 6 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 7 3.40502 0.13361 3.45566 2.80851 7 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 8 3.40502 0.13361 3.45566 2.80851 8 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 9 3.06409 2.57953 3.11318 0.18268 9 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 10 2.93046 3.56298 0.11991 3.46510 10 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 11 0.14515 3.35591 2.78608 3.25528 11 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 12 3.06409 2.57953 3.11318 0.18268 12 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 13 0.14515 3.35591 2.78608 3.25528 13 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 14 3.06409 2.57953 3.11318 0.18268 14 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 15 3.40502 0.13361 3.45566 2.80851 15 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 16 0.14515 3.35591 2.78608 3.25528 16 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 17 2.93046 3.56298 0.11991 3.46510 17 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 18 2.93046 3.56298 0.11991 3.46510 18 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 19 3.40502 0.13361 3.45566 2.80851 19 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 20 0.14515 3.35591 2.78608 3.25528 20 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 21 0.14515 3.35591 2.78608 3.25528 21 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 22 2.93046 3.56298 0.11991 3.46510 22 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 23 0.14515 3.35591 2.78608 3.25528 23 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 24 3.06409 2.57953 3.11318 0.18268 24 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 25 3.06409 2.57953 3.11318 0.18268 25 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 26 0.14515 3.35591 2.78608 3.25528 26 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 27 3.40502 0.13361 3.45566 2.80851 27 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 28 3.40502 0.13361 3.45566 2.80851 28 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 29 3.40502 0.13361 3.45566 2.80851 29 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 30 2.93046 3.56298 0.11991 3.46510 30 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 31 3.40502 0.13361 3.45566 2.80851 31 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 32 3.06409 2.57953 3.11318 0.18268 32 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 33 2.93046 3.56298 0.11991 3.46510 33 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 34 0.14515 3.35591 2.78608 3.25528 34 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 35 0.14515 3.35591 2.78608 3.25528 35 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 36 3.40502 0.13361 3.45566 2.80851 36 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 37 3.06409 2.57953 3.11318 0.18268 37 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 38 3.06409 2.57953 3.11318 0.18268 38 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 39 0.14515 3.35591 2.78608 3.25528 39 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 40 0.14515 3.35591 2.78608 3.25528 40 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 41 2.93046 3.56298 0.11991 3.46510 41 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 42 3.40502 0.13361 3.45566 2.80851 42 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 43 0.14515 3.35591 2.78608 3.25528 43 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 44 3.06409 2.57953 3.11318 0.18268 44 - - 1.38629 1.38629 1.38629 1.38629 0.03740 3.99775 3.99775 1.46634 0.26236 1.09861 0.40547 45 0.14515 3.35591 2.78608 3.25528 45 - - 1.38629 1.38629 1.38629 1.38629 0.01888 3.97923 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Oomycota_4_LSU_start_fifteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Tue Jan 24 11:04:46 2012 NSEQ 25 EFFN 3.445435 CKSUM 249567624 STATS LOCAL MSV -7.6351 0.71932 STATS LOCAL VITERBI -7.6909 0.71932 STATS LOCAL FORWARD -4.1126 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.14410 1.39240 1.64908 1.42385 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 0.00000 * 1 3.12765 2.61995 3.17430 0.17251 1 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 2 3.12765 2.61995 3.17430 0.17251 2 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 3 3.12765 2.61995 3.17430 0.17251 3 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 4 2.97420 3.62668 0.11299 3.53543 4 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 5 2.97420 3.62668 0.11299 3.53543 5 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 6 0.13691 3.41877 2.82688 3.32411 6 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 7 3.47743 0.12504 3.52498 2.86115 7 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 8 3.47743 0.12504 3.52498 2.86115 8 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 9 3.12765 2.61995 3.17430 0.17251 9 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 10 2.97420 3.62668 0.11299 3.53543 10 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 11 0.13691 3.41877 2.82688 3.32411 11 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 12 3.12765 2.61995 3.17430 0.17251 12 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 13 0.13691 3.41877 2.82688 3.32411 13 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 14 3.12765 2.61995 3.17430 0.17251 14 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 15 3.47743 0.12504 3.52498 2.86115 15 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 16 0.13691 3.41877 2.82688 3.32411 16 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 17 1.11991 2.58251 0.67175 2.43851 17 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 18 0.13691 3.41877 2.82688 3.32411 18 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 19 3.47743 0.12504 3.52498 2.86115 19 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 20 0.13691 3.41877 2.82688 3.32411 20 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 21 0.13691 3.41877 2.82688 3.32411 21 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 22 2.97420 3.62668 0.11299 3.53543 22 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 23 0.13691 3.41877 2.82688 3.32411 23 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 24 3.14012 0.20787 3.19834 2.26738 24 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 25 3.12765 2.61995 3.17430 0.17251 25 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 26 0.13691 3.41877 2.82688 3.32411 26 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 27 3.47743 0.12504 3.52498 2.86115 27 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 28 3.47743 0.12504 3.52498 2.86115 28 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 29 3.47743 0.12504 3.52498 2.86115 29 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 30 2.97420 3.62668 0.11299 3.53543 30 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 31 3.47743 0.12504 3.52498 2.86115 31 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 32 3.12765 2.61995 3.17430 0.17251 32 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 33 2.97420 3.62668 0.11299 3.53543 33 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 34 0.13691 3.41877 2.82688 3.32411 34 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 35 0.13691 3.41877 2.82688 3.32411 35 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 36 3.47743 0.12504 3.52498 2.86115 36 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 37 3.12765 2.61995 3.17430 0.17251 37 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 38 3.12765 2.61995 3.17430 0.17251 38 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 39 0.13691 3.41877 2.82688 3.32411 39 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 40 0.13691 3.41877 2.82688 3.32411 40 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 41 2.97420 3.62668 0.11299 3.53543 41 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 42 3.47743 0.12504 3.52498 2.86115 42 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 43 3.12765 2.61995 3.17430 0.17251 43 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 44 0.13691 3.41877 2.82688 3.32411 44 - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03343 4.03343 1.46634 0.26236 1.09861 0.40547 45 0.13691 3.41877 2.82688 3.32411 45 - - 1.38629 1.38629 1.38629 1.38629 0.01820 4.01556 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Oomycota_4_LSU_start_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Tue Jan 24 11:03:08 2012 NSEQ 195 EFFN 3.406906 CKSUM 2842362898 STATS LOCAL MSV -7.4635 0.71931 STATS LOCAL VITERBI -7.6657 0.71931 STATS LOCAL FORWARD -4.1200 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.15800 1.44691 1.51902 1.46247 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 0.00000 * 1 0.15762 3.33365 2.64821 3.23445 1 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 2 3.06219 2.47949 3.11116 0.19252 2 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 3 3.11553 2.61225 3.16265 0.17440 3 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 4 2.96599 3.61467 0.11426 3.52215 4 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 5 2.96599 3.61467 0.11426 3.52215 5 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 6 0.13843 3.40685 2.81917 3.31105 6 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 7 3.46372 0.12661 3.51187 2.85123 7 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 8 3.46372 0.12661 3.51187 2.85123 8 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 9 3.11553 2.61225 3.16265 0.17440 9 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 10 2.96599 3.61467 0.11426 3.52215 10 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 11 0.13843 3.40685 2.81917 3.31105 11 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 12 3.11553 2.61225 3.16265 0.17440 12 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 13 0.13843 3.40685 2.81917 3.31105 13 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 14 3.11553 2.61225 3.16265 0.17440 14 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 15 3.46372 0.12661 3.51187 2.85123 15 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 16 0.13843 3.40685 2.81917 3.31105 16 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 17 2.96599 3.61467 0.11426 3.52215 17 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 18 2.96599 3.61467 0.11426 3.52215 18 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 19 3.34656 0.15194 3.39831 2.62661 19 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 20 0.13843 3.40685 2.81917 3.31105 20 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 21 0.13843 3.40685 2.81917 3.31105 21 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 22 2.96599 3.61467 0.11426 3.52215 22 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 23 0.13843 3.40685 2.81917 3.31105 23 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 24 2.47249 1.22404 2.54227 0.61083 24 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 25 3.11553 2.61225 3.16265 0.17440 25 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 26 0.13843 3.40685 2.81917 3.31105 26 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 27 3.46372 0.12661 3.51187 2.85123 27 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 28 3.46372 0.12661 3.51187 2.85123 28 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 29 3.46372 0.12661 3.51187 2.85123 29 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 30 2.96599 3.61467 0.11426 3.52215 30 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 31 3.46372 0.12661 3.51187 2.85123 31 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 32 3.11553 2.61225 3.16265 0.17440 32 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 33 2.96599 3.61467 0.11426 3.52215 33 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 34 0.13843 3.40685 2.81917 3.31105 34 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 35 0.13843 3.40685 2.81917 3.31105 35 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 36 3.36436 0.14788 3.41555 2.65887 36 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 37 3.11553 2.61225 3.16265 0.17440 37 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 38 3.11553 2.61225 3.16265 0.17440 38 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 39 0.13843 3.40685 2.81917 3.31105 39 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 40 0.13843 3.40685 2.81917 3.31105 40 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 41 2.96599 3.61467 0.11426 3.52215 41 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 42 3.46372 0.12661 3.51187 2.85123 42 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 43 0.13843 3.40685 2.81917 3.31105 43 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 44 3.11553 2.61225 3.16265 0.17440 44 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02658 4.02658 1.46634 0.26236 1.09861 0.40547 45 0.13843 3.40685 2.81917 3.31105 45 - - 1.38629 1.38629 1.38629 1.38629 0.01833 4.00859 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Oomycota_4_LSU_start_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Tue Jan 24 11:02:57 2012 NSEQ 31 EFFN 3.424683 CKSUM 287374859 STATS LOCAL MSV -7.5220 0.71933 STATS LOCAL VITERBI -7.5970 0.71933 STATS LOCAL FORWARD -4.1177 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.12153 1.40210 1.60169 1.48464 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 0.00000 * 1 0.44098 2.50108 2.35237 1.71785 1 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 2 3.12114 2.61581 3.16804 0.17352 2 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 3 3.12114 2.61581 3.16804 0.17352 3 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 4 2.96979 3.62023 0.11367 3.52830 4 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 5 2.96979 3.62023 0.11367 3.52830 5 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 6 0.13773 3.41237 2.82274 3.31709 6 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 7 3.47007 0.12588 3.51795 2.85583 7 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 8 3.47007 0.12588 3.51795 2.85583 8 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 9 3.12114 2.61581 3.16804 0.17352 9 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 10 2.96979 3.62023 0.11367 3.52830 10 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 11 0.13773 3.41237 2.82274 3.31709 11 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 12 3.12114 2.61581 3.16804 0.17352 12 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 13 0.13773 3.41237 2.82274 3.31709 13 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 14 3.12114 2.61581 3.16804 0.17352 14 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 15 3.47007 0.12588 3.51795 2.85583 15 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 16 0.13773 3.41237 2.82274 3.31709 16 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 17 2.96979 3.62023 0.11367 3.52830 17 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 18 0.13773 3.41237 2.82274 3.31709 18 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 19 3.47007 0.12588 3.51795 2.85583 19 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 20 0.13773 3.41237 2.82274 3.31709 20 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 21 0.13773 3.41237 2.82274 3.31709 21 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 22 2.96979 3.62023 0.11367 3.52830 22 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 23 0.13773 3.41237 2.82274 3.31709 23 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 24 2.87262 0.30798 2.93783 1.86084 24 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 25 3.12114 2.61581 3.16804 0.17352 25 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 26 0.13773 3.41237 2.82274 3.31709 26 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 27 3.47007 0.12588 3.51795 2.85583 27 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 28 3.47007 0.12588 3.51795 2.85583 28 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 29 3.47007 0.12588 3.51795 2.85583 29 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 30 2.96979 3.62023 0.11367 3.52830 30 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 31 3.47007 0.12588 3.51795 2.85583 31 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 32 3.12114 2.61581 3.16804 0.17352 32 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 33 2.96979 3.62023 0.11367 3.52830 33 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 34 0.13773 3.41237 2.82274 3.31709 34 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 35 0.13773 3.41237 2.82274 3.31709 35 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 36 3.47007 0.12588 3.51795 2.85583 36 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 37 3.12114 2.61581 3.16804 0.17352 37 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 38 3.12114 2.61581 3.16804 0.17352 38 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 39 0.13773 3.41237 2.82274 3.31709 39 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 40 0.13773 3.41237 2.82274 3.31709 40 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 41 2.96979 3.62023 0.11367 3.52830 41 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 42 3.47007 0.12588 3.51795 2.85583 42 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 43 0.13773 3.41237 2.82274 3.31709 43 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 44 3.12114 2.61581 3.16804 0.17352 44 - - 1.38629 1.38629 1.38629 1.38629 0.03621 4.02975 4.02975 1.46634 0.26236 1.09861 0.40547 45 0.13773 3.41237 2.82274 3.31709 45 - - 1.38629 1.38629 1.38629 1.38629 0.01827 4.01181 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Oomycota_4_LSU_start_fourteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Tue Jan 24 11:04:36 2012 NSEQ 25 EFFN 3.244019 CKSUM 208310769 STATS LOCAL MSV -8.0010 0.71932 STATS LOCAL VITERBI -7.6179 0.71932 STATS LOCAL FORWARD -4.1225 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.16320 1.39502 1.52277 1.50697 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 0.00000 * 1 0.14531 3.35475 2.78532 3.25400 1 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 2 3.06292 2.57879 3.11206 0.18287 2 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 3 3.06292 2.57879 3.11206 0.18287 3 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 4 2.92964 3.56180 0.12004 3.46379 4 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 5 2.92964 3.56180 0.12004 3.46379 5 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 6 0.14531 3.35475 2.78532 3.25400 6 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 7 3.40368 0.13377 3.45438 2.80752 7 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 8 3.40368 0.13377 3.45438 2.80752 8 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 9 3.06292 2.57879 3.11206 0.18287 9 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 10 2.92964 3.56180 0.12004 3.46379 10 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 11 0.14531 3.35475 2.78532 3.25400 11 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 12 3.06292 2.57879 3.11206 0.18287 12 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 13 0.14531 3.35475 2.78532 3.25400 13 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 14 3.06292 2.57879 3.11206 0.18287 14 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 15 3.40368 0.13377 3.45438 2.80752 15 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 16 0.14531 3.35475 2.78532 3.25400 16 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 17 2.92964 3.56180 0.12004 3.46379 17 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 18 2.92964 3.56180 0.12004 3.46379 18 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 19 3.40368 0.13377 3.45438 2.80752 19 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 20 0.14531 3.35475 2.78532 3.25400 20 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 21 0.14531 3.35475 2.78532 3.25400 21 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 22 2.92964 3.56180 0.12004 3.46379 22 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 23 0.14531 3.35475 2.78532 3.25400 23 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 24 3.06292 2.57879 3.11206 0.18287 24 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 25 3.06292 2.57879 3.11206 0.18287 25 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 26 0.14531 3.35475 2.78532 3.25400 26 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 27 3.40368 0.13377 3.45438 2.80752 27 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 28 3.40368 0.13377 3.45438 2.80752 28 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 29 3.40368 0.13377 3.45438 2.80752 29 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 30 2.92964 3.56180 0.12004 3.46379 30 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 31 3.40368 0.13377 3.45438 2.80752 31 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 32 3.06292 2.57879 3.11206 0.18287 32 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 33 2.92964 3.56180 0.12004 3.46379 33 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 34 0.14531 3.35475 2.78532 3.25400 34 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 35 0.14531 3.35475 2.78532 3.25400 35 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 36 3.40368 0.13377 3.45438 2.80752 36 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 37 3.06292 2.57879 3.11206 0.18287 37 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 38 3.06292 2.57879 3.11206 0.18287 38 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 39 0.14531 3.35475 2.78532 3.25400 39 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 40 0.14531 3.35475 2.78532 3.25400 40 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 41 2.92964 3.56180 0.12004 3.46379 41 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 42 3.40368 0.13377 3.45438 2.80752 42 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 43 0.14531 3.35475 2.78532 3.25400 43 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 44 0.14531 3.35475 2.78532 3.25400 44 - - 1.38629 1.38629 1.38629 1.38629 0.03743 3.99710 3.99710 1.46634 0.26236 1.09861 0.40547 45 3.40368 0.13377 3.45438 2.80752 45 - - 1.38629 1.38629 1.38629 1.38629 0.01889 3.97856 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Oomycota_4_LSU_start_nine_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Tue Jan 24 11:03:40 2012 NSEQ 19 EFFN 3.251709 CKSUM 1100350994 STATS LOCAL MSV -7.8849 0.71932 STATS LOCAL VITERBI -7.6655 0.71932 STATS LOCAL FORWARD -3.9906 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.10878 1.46608 1.52006 1.51180 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 0.00000 * 1 0.14497 3.35727 2.78696 3.25677 1 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 2 0.14497 3.35727 2.78696 3.25677 2 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 3 3.40659 0.13342 3.45717 2.80965 3 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 4 2.93142 3.56437 0.11975 3.46663 4 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 5 2.93142 3.56437 0.11975 3.46663 5 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 6 0.14497 3.35727 2.78696 3.25677 6 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 7 3.40659 0.13342 3.45717 2.80965 7 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 8 3.40659 0.13342 3.45717 2.80965 8 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 9 3.06546 2.58040 3.11450 0.18245 9 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 10 2.93142 3.56437 0.11975 3.46663 10 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 11 0.14497 3.35727 2.78696 3.25677 11 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 12 3.06546 2.58040 3.11450 0.18245 12 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 13 0.14497 3.35727 2.78696 3.25677 13 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 14 3.06546 2.58040 3.11450 0.18245 14 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 15 3.06546 2.58040 3.11450 0.18245 15 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 16 0.14497 3.35727 2.78696 3.25677 16 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 17 2.93142 3.56437 0.11975 3.46663 17 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 18 2.93142 3.56437 0.11975 3.46663 18 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 19 3.40659 0.13342 3.45717 2.80965 19 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 20 0.14497 3.35727 2.78696 3.25677 20 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 21 0.14497 3.35727 2.78696 3.25677 21 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 22 2.93142 3.56437 0.11975 3.46663 22 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 23 0.14497 3.35727 2.78696 3.25677 23 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 24 3.06546 2.58040 3.11450 0.18245 24 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 25 3.06546 2.58040 3.11450 0.18245 25 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 26 0.14497 3.35727 2.78696 3.25677 26 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 27 3.40659 0.13342 3.45717 2.80965 27 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 28 3.40659 0.13342 3.45717 2.80965 28 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 29 3.40659 0.13342 3.45717 2.80965 29 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 30 2.93142 3.56437 0.11975 3.46663 30 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 31 3.40659 0.13342 3.45717 2.80965 31 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 32 3.06546 2.58040 3.11450 0.18245 32 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 33 2.93142 3.56437 0.11975 3.46663 33 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 34 0.14497 3.35727 2.78696 3.25677 34 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 35 0.14497 3.35727 2.78696 3.25677 35 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 36 3.40659 0.13342 3.45717 2.80965 36 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 37 3.06546 2.58040 3.11450 0.18245 37 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 38 3.06546 2.58040 3.11450 0.18245 38 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 39 0.14497 3.35727 2.78696 3.25677 39 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 40 0.14497 3.35727 2.78696 3.25677 40 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 41 2.93142 3.56437 0.11975 3.46663 41 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 42 3.40659 0.13342 3.45717 2.80965 42 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 43 0.14497 3.35727 2.78696 3.25677 43 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 44 3.06546 2.58040 3.11450 0.18245 44 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99851 3.99851 1.46634 0.26236 1.09861 0.40547 45 0.14497 3.35727 2.78696 3.25677 45 - - 1.38629 1.38629 1.38629 1.38629 0.01886 3.98000 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Oomycota_4_LSU_start_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Tue Jan 24 11:02:29 2012 NSEQ 68 EFFN 3.324463 CKSUM 3362386651 STATS LOCAL MSV -7.8671 0.71933 STATS LOCAL VITERBI -7.7272 0.71933 STATS LOCAL FORWARD -3.9336 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.11133 1.39673 1.69458 1.42796 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 0.00000 * 1 3.08918 2.59551 3.13732 0.17858 1 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 2 3.08918 2.59551 3.13732 0.17858 2 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 3 3.08918 2.59551 3.13732 0.17858 3 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 4 2.94793 3.58833 0.11710 3.49306 4 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 5 2.94793 3.58833 0.11710 3.49306 5 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 6 0.14182 3.38083 2.80229 3.28255 6 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 7 3.43377 0.13013 3.48320 2.82948 7 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 8 3.43377 0.13013 3.48320 2.82948 8 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 9 3.08918 2.59551 3.13732 0.17858 9 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 10 2.94793 3.58833 0.11710 3.49306 10 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 11 0.14182 3.38083 2.80229 3.28255 11 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 12 3.08918 2.59551 3.13732 0.17858 12 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 13 0.14182 3.38083 2.80229 3.28255 13 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 14 3.08918 2.59551 3.13732 0.17858 14 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 15 3.43377 0.13013 3.48320 2.82948 15 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 16 0.14182 3.38083 2.80229 3.28255 16 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 17 0.14182 3.38083 2.80229 3.28255 17 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 18 0.14182 3.38083 2.80229 3.28255 18 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 19 3.43377 0.13013 3.48320 2.82948 19 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 20 0.14182 3.38083 2.80229 3.28255 20 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 21 0.14182 3.38083 2.80229 3.28255 21 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 22 2.94793 3.58833 0.11710 3.49306 22 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 23 0.14182 3.38083 2.80229 3.28255 23 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 24 3.07417 0.22287 3.13428 2.20709 24 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 25 3.08918 2.59551 3.13732 0.17858 25 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 26 0.14182 3.38083 2.80229 3.28255 26 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 27 3.43377 0.13013 3.48320 2.82948 27 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 28 3.43377 0.13013 3.48320 2.82948 28 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 29 3.43377 0.13013 3.48320 2.82948 29 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 30 2.94793 3.58833 0.11710 3.49306 30 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 31 3.43377 0.13013 3.48320 2.82948 31 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 32 3.08918 2.59551 3.13732 0.17858 32 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 33 2.94793 3.58833 0.11710 3.49306 33 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 34 0.14182 3.38083 2.80229 3.28255 34 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 35 0.14182 3.38083 2.80229 3.28255 35 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 36 3.43377 0.13013 3.48320 2.82948 36 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 37 3.08918 2.59551 3.13732 0.17858 37 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 38 3.08918 2.59551 3.13732 0.17858 38 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 39 0.14182 3.38083 2.80229 3.28255 39 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 40 0.14182 3.38083 2.80229 3.28255 40 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 41 2.94793 3.58833 0.11710 3.49306 41 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 42 3.43377 0.13013 3.48320 2.82948 42 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 43 0.14182 3.38083 2.80229 3.28255 43 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 44 3.08918 2.59551 3.13732 0.17858 44 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01177 4.01177 1.46634 0.26236 1.09861 0.40547 45 0.14182 3.38083 2.80229 3.28255 45 - - 1.38629 1.38629 1.38629 1.38629 0.01861 3.99350 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Oomycota_4_LSU_start_seven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Tue Jan 24 11:03:21 2012 NSEQ 8 EFFN 3.324219 CKSUM 4152346698 STATS LOCAL MSV -8.0731 0.71933 STATS LOCAL VITERBI -7.6102 0.71933 STATS LOCAL FORWARD -4.1659 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.10749 1.61676 1.60160 1.31119 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 0.00000 * 1 0.14183 3.38076 2.80224 3.28247 1 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 2 3.08911 2.59546 3.13724 0.17860 2 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 3 3.08911 2.59546 3.13724 0.17860 3 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 4 2.94787 3.58826 0.11710 3.49298 4 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 5 2.94787 3.58826 0.11710 3.49298 5 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 6 0.14183 3.38076 2.80224 3.28247 6 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 7 3.43368 0.13014 3.48311 2.82941 7 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 8 3.43368 0.13014 3.48311 2.82941 8 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 9 3.08911 2.59546 3.13724 0.17860 9 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 10 2.94787 3.58826 0.11710 3.49298 10 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 11 0.14183 3.38076 2.80224 3.28247 11 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 12 3.08911 2.59546 3.13724 0.17860 12 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 13 0.14183 3.38076 2.80224 3.28247 13 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 14 3.08911 2.59546 3.13724 0.17860 14 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 15 3.43368 0.13014 3.48311 2.82941 15 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 16 0.14183 3.38076 2.80224 3.28247 16 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 17 0.14183 3.38076 2.80224 3.28247 17 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 18 2.94787 3.58826 0.11710 3.49298 18 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 19 3.08911 2.59546 3.13724 0.17860 19 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 20 0.14183 3.38076 2.80224 3.28247 20 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 21 0.14183 3.38076 2.80224 3.28247 21 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 22 2.94787 3.58826 0.11710 3.49298 22 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 23 0.14183 3.38076 2.80224 3.28247 23 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 24 3.08911 2.59546 3.13724 0.17860 24 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 25 3.08911 2.59546 3.13724 0.17860 25 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 26 0.14183 3.38076 2.80224 3.28247 26 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 27 3.43368 0.13014 3.48311 2.82941 27 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 28 3.43368 0.13014 3.48311 2.82941 28 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 29 3.43368 0.13014 3.48311 2.82941 29 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 30 2.94787 3.58826 0.11710 3.49298 30 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 31 3.43368 0.13014 3.48311 2.82941 31 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 32 3.08911 2.59546 3.13724 0.17860 32 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 33 2.94787 3.58826 0.11710 3.49298 33 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 34 0.14183 3.38076 2.80224 3.28247 34 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 35 0.14183 3.38076 2.80224 3.28247 35 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 36 3.08911 2.59546 3.13724 0.17860 36 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 37 3.08911 2.59546 3.13724 0.17860 37 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 38 3.08911 2.59546 3.13724 0.17860 38 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 39 0.14183 3.38076 2.80224 3.28247 39 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 40 0.14183 3.38076 2.80224 3.28247 40 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 41 2.94787 3.58826 0.11710 3.49298 41 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 42 3.43368 0.13014 3.48311 2.82941 42 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 43 0.14183 3.38076 2.80224 3.28247 43 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 44 3.08911 2.59546 3.13724 0.17860 44 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 45 0.14183 3.38076 2.80224 3.28247 45 - - 1.38629 1.38629 1.38629 1.38629 0.01861 3.99346 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Oomycota_4_LSU_start_six_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Tue Jan 24 11:03:15 2012 NSEQ 5 EFFN 3.315430 CKSUM 3218924662 STATS LOCAL MSV -8.1953 0.71933 STATS LOCAL VITERBI -7.6957 0.71933 STATS LOCAL FORWARD -4.0267 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.05857 1.53627 1.69177 1.37170 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 0.00000 * 1 0.14220 3.37794 2.80041 3.27938 1 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 2 3.08626 2.59365 3.13451 0.17906 2 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 3 3.08626 2.59365 3.13451 0.17906 3 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 4 0.14220 3.37794 2.80041 3.27938 4 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 5 2.94591 3.58540 0.11742 3.48982 5 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 6 0.14220 3.37794 2.80041 3.27938 6 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 7 3.43043 0.13053 3.48000 2.82705 7 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 8 3.43043 0.13053 3.48000 2.82705 8 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 9 3.08626 2.59365 3.13451 0.17906 9 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 10 2.94591 3.58540 0.11742 3.48982 10 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 11 0.14220 3.37794 2.80041 3.27938 11 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 12 3.08626 2.59365 3.13451 0.17906 12 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 13 0.14220 3.37794 2.80041 3.27938 13 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 14 3.08626 2.59365 3.13451 0.17906 14 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 15 3.43043 0.13053 3.48000 2.82705 15 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 16 0.14220 3.37794 2.80041 3.27938 16 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 17 0.14220 3.37794 2.80041 3.27938 17 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 18 2.94591 3.58540 0.11742 3.48982 18 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 19 3.43043 0.13053 3.48000 2.82705 19 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 20 0.14220 3.37794 2.80041 3.27938 20 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 21 0.14220 3.37794 2.80041 3.27938 21 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 22 2.94591 3.58540 0.11742 3.48982 22 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 23 0.14220 3.37794 2.80041 3.27938 23 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 24 3.08626 2.59365 3.13451 0.17906 24 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 25 3.08626 2.59365 3.13451 0.17906 25 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 26 0.14220 3.37794 2.80041 3.27938 26 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 27 3.43043 0.13053 3.48000 2.82705 27 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 28 3.43043 0.13053 3.48000 2.82705 28 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 29 3.43043 0.13053 3.48000 2.82705 29 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 30 2.94591 3.58540 0.11742 3.48982 30 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 31 3.43043 0.13053 3.48000 2.82705 31 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 32 3.08626 2.59365 3.13451 0.17906 32 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 33 2.94591 3.58540 0.11742 3.48982 33 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 34 0.14220 3.37794 2.80041 3.27938 34 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 35 0.14220 3.37794 2.80041 3.27938 35 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 36 3.08626 2.59365 3.13451 0.17906 36 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 37 3.08626 2.59365 3.13451 0.17906 37 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 38 3.08626 2.59365 3.13451 0.17906 38 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 39 0.14220 3.37794 2.80041 3.27938 39 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 40 0.14220 3.37794 2.80041 3.27938 40 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 41 2.94591 3.58540 0.11742 3.48982 41 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 42 3.43043 0.13053 3.48000 2.82705 42 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 43 0.14220 3.37794 2.80041 3.27938 43 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 44 3.08626 2.59365 3.13451 0.17906 44 - - 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 45 0.14220 3.37794 2.80041 3.27938 45 - - 1.38629 1.38629 1.38629 1.38629 0.01864 3.99184 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Oomycota_4_LSU_start_sixteena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Tue Jan 24 11:04:58 2012 NSEQ 3 EFFN 3.000000 CKSUM 197893464 STATS LOCAL MSV -7.8866 0.72046 STATS LOCAL VITERBI -7.6374 0.72046 STATS LOCAL FORWARD -3.9677 0.72046 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.22010 1.45900 1.51859 1.37314 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.15719 3.27118 2.73043 3.16274 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.97980 2.52563 3.03204 0.19727 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.97980 2.52563 3.03204 0.19727 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.86982 3.47591 0.13017 3.36931 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.97980 2.52563 3.03204 0.19727 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.30705 0.14631 3.36166 2.73626 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.15719 3.27118 2.73043 3.16274 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.86982 3.47591 0.13017 3.36931 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.30705 0.14631 3.36166 2.73626 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.15719 3.27118 2.73043 3.16274 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.15719 3.27118 2.73043 3.16274 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.97980 2.52563 3.03204 0.19727 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.97980 2.52563 3.03204 0.19727 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.15719 3.27118 2.73043 3.16274 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.86982 3.47591 0.13017 3.36931 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.97980 2.52563 3.03204 0.19727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.97980 2.52563 3.03204 0.19727 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 0.15719 3.27118 2.73043 3.16274 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.86982 3.47591 0.13017 3.36931 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.97980 2.52563 3.03204 0.19727 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 0.15719 3.27118 2.73043 3.16274 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.97980 2.52563 3.03204 0.19727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Oomycota_4_LSU_start_sixteenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Tue Jan 24 11:05:04 2012 NSEQ 3 EFFN 3.000000 CKSUM 1405176074 STATS LOCAL MSV -7.8729 0.72043 STATS LOCAL VITERBI -7.7606 0.72043 STATS LOCAL FORWARD -4.1703 0.72043 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.21871 1.53500 1.44288 1.37559 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.15719 3.27118 2.73043 3.16274 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.97980 2.52563 3.03204 0.19727 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.97980 2.52563 3.03204 0.19727 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.86982 3.47591 0.13017 3.36931 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.97980 2.52563 3.03204 0.19727 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.30705 0.14631 3.36166 2.73626 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.15719 3.27118 2.73043 3.16274 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.86982 3.47591 0.13017 3.36931 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.30705 0.14631 3.36166 2.73626 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.15719 3.27118 2.73043 3.16274 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.15719 3.27118 2.73043 3.16274 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.97980 2.52563 3.03204 0.19727 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.97980 2.52563 3.03204 0.19727 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.15719 3.27118 2.73043 3.16274 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.86982 3.47591 0.13017 3.36931 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.15719 3.27118 2.73043 3.16274 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 3.30705 0.14631 3.36166 2.73626 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.97980 2.52563 3.03204 0.19727 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.86982 3.47591 0.13017 3.36931 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.30705 0.14631 3.36166 2.73626 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 0.15719 3.27118 2.73043 3.16274 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Oomycota_4_LSU_start_ten_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Tue Jan 24 11:03:49 2012 NSEQ 3 EFFN 3.000000 CKSUM 199962319 STATS LOCAL MSV -7.9029 0.72024 STATS LOCAL VITERBI -7.5957 0.72024 STATS LOCAL FORWARD -4.0138 0.72024 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.11432 1.39839 1.51667 1.58267 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.15719 3.27118 2.73043 3.16274 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 0.15719 3.27118 2.73043 3.16274 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.86982 3.47591 0.13017 3.36931 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.97980 2.52563 3.03204 0.19727 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.30705 0.14631 3.36166 2.73626 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.15719 3.27118 2.73043 3.16274 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.86982 3.47591 0.13017 3.36931 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.30705 0.14631 3.36166 2.73626 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.15719 3.27118 2.73043 3.16274 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.15719 3.27118 2.73043 3.16274 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.97980 2.52563 3.03204 0.19727 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.97980 2.52563 3.03204 0.19727 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.15719 3.27118 2.73043 3.16274 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.86982 3.47591 0.13017 3.36931 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.15719 3.27118 2.73043 3.16274 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 3.30705 0.14631 3.36166 2.73626 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.97980 2.52563 3.03204 0.19727 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.86982 3.47591 0.13017 3.36931 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.30705 0.14631 3.36166 2.73626 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 0.15719 3.27118 2.73043 3.16274 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Oomycota_4_LSU_start_thirteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Tue Jan 24 11:04:27 2012 NSEQ 5 EFFN 3.305664 CKSUM 121944797 STATS LOCAL MSV -8.0146 0.71931 STATS LOCAL VITERBI -7.7479 0.71931 STATS LOCAL FORWARD -3.9997 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27539 1.45641 1.52589 1.30867 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 0.00000 * 1 0.14262 3.37480 2.79837 3.27595 1 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 2 3.08310 2.59163 3.13146 0.17957 2 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 3 3.08310 2.59163 3.13146 0.17957 3 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 4 2.94371 3.58221 0.11777 3.48630 4 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 5 2.94371 3.58221 0.11777 3.48630 5 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 6 0.14262 3.37480 2.79837 3.27595 6 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 7 3.42681 0.13096 3.47654 2.82441 7 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 8 3.42681 0.13096 3.47654 2.82441 8 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 9 3.08310 2.59163 3.13146 0.17957 9 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 10 2.94371 3.58221 0.11777 3.48630 10 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 11 0.14262 3.37480 2.79837 3.27595 11 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 12 3.08310 2.59163 3.13146 0.17957 12 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 13 3.08310 2.59163 3.13146 0.17957 13 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 14 3.08310 2.59163 3.13146 0.17957 14 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 15 3.42681 0.13096 3.47654 2.82441 15 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 16 0.14262 3.37480 2.79837 3.27595 16 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 17 2.94371 3.58221 0.11777 3.48630 17 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 18 2.94371 3.58221 0.11777 3.48630 18 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 19 3.42681 0.13096 3.47654 2.82441 19 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 20 0.14262 3.37480 2.79837 3.27595 20 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 21 0.14262 3.37480 2.79837 3.27595 21 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 22 2.94371 3.58221 0.11777 3.48630 22 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 23 0.14262 3.37480 2.79837 3.27595 23 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 24 3.08310 2.59163 3.13146 0.17957 24 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 25 3.08310 2.59163 3.13146 0.17957 25 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 26 3.08310 2.59163 3.13146 0.17957 26 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 27 3.42681 0.13096 3.47654 2.82441 27 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 28 3.42681 0.13096 3.47654 2.82441 28 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 29 3.42681 0.13096 3.47654 2.82441 29 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 30 2.94371 3.58221 0.11777 3.48630 30 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 31 3.42681 0.13096 3.47654 2.82441 31 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 32 3.08310 2.59163 3.13146 0.17957 32 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 33 2.94371 3.58221 0.11777 3.48630 33 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 34 0.14262 3.37480 2.79837 3.27595 34 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 35 0.14262 3.37480 2.79837 3.27595 35 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 36 3.42681 0.13096 3.47654 2.82441 36 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 37 3.08310 2.59163 3.13146 0.17957 37 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 38 3.08310 2.59163 3.13146 0.17957 38 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 39 0.14262 3.37480 2.79837 3.27595 39 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 40 0.14262 3.37480 2.79837 3.27595 40 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 41 2.94371 3.58221 0.11777 3.48630 41 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 42 3.42681 0.13096 3.47654 2.82441 42 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 43 0.14262 3.37480 2.79837 3.27595 43 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 44 3.08310 2.59163 3.13146 0.17957 44 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 45 0.14262 3.37480 2.79837 3.27595 45 - - 1.38629 1.38629 1.38629 1.38629 0.01867 3.99003 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Oomycota_4_LSU_start_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Tue Jan 24 11:02:48 2012 NSEQ 13 EFFN 3.297607 CKSUM 517071543 STATS LOCAL MSV -8.1345 0.71932 STATS LOCAL VITERBI -7.5842 0.71932 STATS LOCAL FORWARD -4.1111 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.16392 1.45927 1.60535 1.36838 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 0.00000 * 1 3.08048 2.58997 3.12894 0.17999 1 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 2 3.08048 2.58997 3.12894 0.17999 2 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 3 3.08048 2.58997 3.12894 0.17999 3 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 4 2.94190 3.57957 0.11806 3.48339 4 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 5 2.94190 3.57957 0.11806 3.48339 5 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 6 0.14296 3.37220 2.79669 3.27310 6 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 7 3.42382 0.13132 3.47367 2.82223 7 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 8 3.42382 0.13132 3.47367 2.82223 8 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 9 3.08048 2.58997 3.12894 0.17999 9 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 10 2.94190 3.57957 0.11806 3.48339 10 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 11 0.14296 3.37220 2.79669 3.27310 11 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 12 3.08048 2.58997 3.12894 0.17999 12 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 13 0.14296 3.37220 2.79669 3.27310 13 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 14 3.08048 2.58997 3.12894 0.17999 14 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 15 3.42382 0.13132 3.47367 2.82223 15 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 16 0.14296 3.37220 2.79669 3.27310 16 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 17 2.94190 3.57957 0.11806 3.48339 17 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 18 0.14296 3.37220 2.79669 3.27310 18 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 19 3.42382 0.13132 3.47367 2.82223 19 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 20 0.14296 3.37220 2.79669 3.27310 20 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 21 0.14296 3.37220 2.79669 3.27310 21 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 22 2.94190 3.57957 0.11806 3.48339 22 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 23 0.14296 3.37220 2.79669 3.27310 23 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 24 3.42382 0.13132 3.47367 2.82223 24 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 25 3.08048 2.58997 3.12894 0.17999 25 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 26 0.14296 3.37220 2.79669 3.27310 26 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 27 3.42382 0.13132 3.47367 2.82223 27 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 28 3.42382 0.13132 3.47367 2.82223 28 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 29 3.42382 0.13132 3.47367 2.82223 29 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 30 2.94190 3.57957 0.11806 3.48339 30 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 31 3.42382 0.13132 3.47367 2.82223 31 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 32 3.08048 2.58997 3.12894 0.17999 32 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 33 2.94190 3.57957 0.11806 3.48339 33 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 34 0.14296 3.37220 2.79669 3.27310 34 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 35 0.14296 3.37220 2.79669 3.27310 35 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 36 3.08048 2.58997 3.12894 0.17999 36 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 37 3.08048 2.58997 3.12894 0.17999 37 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 38 3.08048 2.58997 3.12894 0.17999 38 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 39 0.14296 3.37220 2.79669 3.27310 39 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 40 0.14296 3.37220 2.79669 3.27310 40 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 41 2.94190 3.57957 0.11806 3.48339 41 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 42 3.42382 0.13132 3.47367 2.82223 42 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 43 0.14296 3.37220 2.79669 3.27310 43 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 44 3.08048 2.58997 3.12894 0.17999 44 - - 1.38629 1.38629 1.38629 1.38629 0.03706 4.00690 4.00690 1.46634 0.26236 1.09861 0.40547 45 0.14296 3.37220 2.79669 3.27310 45 - - 1.38629 1.38629 1.38629 1.38629 0.01870 3.98854 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Oomycota_4_LSU_start_twelve_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Tue Jan 24 11:04:16 2012 NSEQ 3 EFFN 3.000000 CKSUM 1474323428 STATS LOCAL MSV -7.8855 0.72052 STATS LOCAL VITERBI -7.6818 0.72052 STATS LOCAL FORWARD -4.0882 0.72052 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.16636 1.45838 1.59742 1.37250 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.15719 3.27118 2.73043 3.16274 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.97980 2.52563 3.03204 0.19727 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.97980 2.52563 3.03204 0.19727 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.86982 3.47591 0.13017 3.36931 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.97980 2.52563 3.03204 0.19727 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.30705 0.14631 3.36166 2.73626 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.15719 3.27118 2.73043 3.16274 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.86982 3.47591 0.13017 3.36931 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.30705 0.14631 3.36166 2.73626 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.15719 3.27118 2.73043 3.16274 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.15719 3.27118 2.73043 3.16274 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.97980 2.52563 3.03204 0.19727 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.97980 2.52563 3.03204 0.19727 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.15719 3.27118 2.73043 3.16274 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.86982 3.47591 0.13017 3.36931 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.15719 3.27118 2.73043 3.16274 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 3.30705 0.14631 3.36166 2.73626 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.97980 2.52563 3.03204 0.19727 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.97980 2.52563 3.03204 0.19727 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.30705 0.14631 3.36166 2.73626 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 0.15719 3.27118 2.73043 3.16274 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Oomycota_4_LSU_start_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Tue Jan 24 11:02:40 2012 NSEQ 8 EFFN 3.425781 CKSUM 1590920301 STATS LOCAL MSV -7.4532 0.71932 STATS LOCAL VITERBI -7.5721 0.71932 STATS LOCAL FORWARD -4.2046 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.19206 1.45567 1.57364 1.36308 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 0.00000 * 1 3.12148 2.61603 3.16838 0.17347 1 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 2 3.12148 2.61603 3.16838 0.17347 2 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 3 3.12148 2.61603 3.16838 0.17347 3 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 4 2.97003 3.62058 0.11363 3.52868 4 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 5 2.97003 3.62058 0.11363 3.52868 5 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 6 0.13768 3.41271 2.82296 3.31747 6 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 7 3.47046 0.12584 3.51832 2.85611 7 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 8 3.47046 0.12584 3.51832 2.85611 8 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 9 3.12148 2.61603 3.16838 0.17347 9 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 10 2.97003 3.62058 0.11363 3.52868 10 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 11 0.13768 3.41271 2.82296 3.31747 11 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 12 3.12148 2.61603 3.16838 0.17347 12 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 13 0.13768 3.41271 2.82296 3.31747 13 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 14 3.12148 2.61603 3.16838 0.17347 14 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 15 3.47046 0.12584 3.51832 2.85611 15 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 16 0.13768 3.41271 2.82296 3.31747 16 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 17 0.85736 2.53227 0.90541 2.38746 17 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 18 2.97003 3.62058 0.11363 3.52868 18 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 19 3.12148 2.61603 3.16838 0.17347 19 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 20 0.13768 3.41271 2.82296 3.31747 20 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 21 0.13768 3.41271 2.82296 3.31747 21 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 22 2.97003 3.62058 0.11363 3.52868 22 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 23 0.13768 3.41271 2.82296 3.31747 23 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 24 3.47046 0.12584 3.51832 2.85611 24 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 25 3.12148 2.61603 3.16838 0.17347 25 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 26 0.13768 3.41271 2.82296 3.31747 26 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 27 3.47046 0.12584 3.51832 2.85611 27 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 28 3.47046 0.12584 3.51832 2.85611 28 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 29 3.47046 0.12584 3.51832 2.85611 29 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 30 2.97003 3.62058 0.11363 3.52868 30 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 31 3.47046 0.12584 3.51832 2.85611 31 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 32 3.12148 2.61603 3.16838 0.17347 32 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 33 2.97003 3.62058 0.11363 3.52868 33 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 34 0.13768 3.41271 2.82296 3.31747 34 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 35 0.13768 3.41271 2.82296 3.31747 35 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 36 3.47046 0.12584 3.51832 2.85611 36 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 37 3.12148 2.61603 3.16838 0.17347 37 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 38 3.12148 2.61603 3.16838 0.17347 38 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 39 0.13768 3.41271 2.82296 3.31747 39 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 40 0.13768 3.41271 2.82296 3.31747 40 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 41 2.97003 3.62058 0.11363 3.52868 41 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 42 3.47046 0.12584 3.51832 2.85611 42 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 43 0.13768 3.41271 2.82296 3.31747 43 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 44 3.12148 2.61603 3.16838 0.17347 44 - - 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 45 0.13768 3.41271 2.82296 3.31747 45 - - 1.38629 1.38629 1.38629 1.38629 0.01826 4.01201 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Oomycota_1_SSU_end_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 21 16:12:25 2012 NSEQ 304 EFFN 3.279541 CKSUM 1893751502 STATS LOCAL MSV -8.0320 0.71934 STATS LOCAL VITERBI -7.6889 0.71934 STATS LOCAL FORWARD -4.1095 0.71934 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27125 1.62696 1.24907 1.44298 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 0.00000 * 1 0.16236 3.29644 2.63327 3.19393 1 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 2 2.68931 3.30870 0.16605 3.02614 2 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 3 3.07459 2.58622 3.12328 0.18095 3 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 4 3.41707 0.13214 3.46721 2.81731 4 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 5 2.93780 3.57362 0.11872 3.47683 5 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 6 3.07459 2.58622 3.12328 0.18095 6 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 7 0.14375 3.36635 2.79288 3.26670 7 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 8 0.14375 3.36635 2.79288 3.26670 8 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 9 3.41707 0.13214 3.46721 2.81731 9 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 10 0.14375 3.36635 2.79288 3.26670 10 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 11 0.15678 3.31683 2.67806 3.21534 11 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 12 2.93780 3.57362 0.11872 3.47683 12 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 13 2.93780 3.57362 0.11872 3.47683 13 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 14 3.07459 2.58622 3.12328 0.18095 14 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 15 3.07459 2.58622 3.12328 0.18095 15 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 16 3.03126 2.47943 3.08134 0.19595 16 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 17 3.35118 0.14643 3.40314 2.68969 17 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 18 3.41707 0.13214 3.46721 2.81731 18 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 19 2.93780 3.57362 0.11872 3.47683 19 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 20 3.07459 2.58622 3.12328 0.18095 20 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 21 0.14375 3.36635 2.79288 3.26670 21 - - 1.38629 1.38629 1.38629 1.38629 0.06604 4.00361 3.08663 1.46634 0.26236 1.09861 0.40547 22 2.90239 3.52248 0.12456 3.42049 22 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97582 3.97582 1.46634 0.26236 0.58748 0.81131 23 2.93780 3.57362 0.11872 3.47683 23 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 24 3.07459 2.58622 3.12328 0.18095 24 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 25 2.93780 3.57362 0.11872 3.47683 25 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 26 0.14375 3.36635 2.79288 3.26670 26 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 27 0.14375 3.36635 2.79288 3.26670 27 - - 1.38629 1.38629 1.38629 1.38629 0.05071 4.00361 3.46743 1.46634 0.26236 1.09861 0.40547 28 3.39016 0.13545 3.44142 2.79762 28 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99057 3.99057 1.46634 0.26236 0.77471 0.61774 29 3.41707 0.13214 3.46721 2.81731 29 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 30 3.07459 2.58622 3.12328 0.18095 30 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 31 2.93780 3.57362 0.11872 3.47683 31 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 32 3.41707 0.13214 3.46721 2.81731 32 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 33 2.93780 3.57362 0.11872 3.47683 33 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 34 2.93780 3.57362 0.11872 3.47683 34 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 35 0.14375 3.36635 2.79288 3.26670 35 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 36 0.14375 3.36635 2.79288 3.26670 36 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 37 2.93780 3.57362 0.11872 3.47683 37 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 38 2.93780 3.57362 0.11872 3.47683 38 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 39 0.14375 3.36635 2.79288 3.26670 39 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 40 3.07459 2.58622 3.12328 0.18095 40 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 41 3.41707 0.13214 3.46721 2.81731 41 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 42 0.14375 3.36635 2.79288 3.26670 42 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 43 3.07459 2.58622 3.12328 0.18095 43 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 44 3.07459 2.58622 3.12328 0.18095 44 - - 1.38629 1.38629 1.38629 1.38629 0.03718 4.00361 4.00361 1.46634 0.26236 1.09861 0.40547 45 0.14375 3.36635 2.79288 3.26670 45 - - 1.38629 1.38629 1.38629 1.38629 0.01876 3.98519 * 1.46634 0.26236 0.00000 * //