view ITSx_db/HMMs/C.hmm @ 6:8a6312fa4633 draft

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HMMER3/b [3.0 | March 2010]
NAME  3_End_Bacillariophyta_58S_end_eight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 11:42:32 2012
NSEQ  5
EFFN  3.325195
CKSUM 993487011
STATS LOCAL MSV       -8.1073  0.71931
STATS LOCAL VITERBI   -7.7843  0.71931
STATS LOCAL FORWARD   -3.8720  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47720  1.44778  1.45140  1.19603
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  0.00000        *
      1   2.94809  3.58857  0.11707  3.49333      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      2   3.43404  0.13010  3.48346  2.82967      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      3   2.94809  3.58857  0.11707  3.49333      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      4   3.43404  0.13010  3.48346  2.82967      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      5   3.08942  2.59566  3.13755  0.17855      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      6   0.14179  3.38107  2.80245  3.28281      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      7   3.43404  0.13010  3.48346  2.82967      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      8   3.08942  2.59566  3.13755  0.17855      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      9   2.94809  3.58857  0.11707  3.49333      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     10   0.14179  3.38107  2.80245  3.28281     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     11   2.94809  3.58857  0.11707  3.49333     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     12   3.08942  2.59566  3.13755  0.17855     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     13   0.14179  3.38107  2.80245  3.28281     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     14   0.14179  3.38107  2.80245  3.28281     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     15   3.08942  2.59566  3.13755  0.17855     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     16   3.43404  0.13010  3.48346  2.82967     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     17   3.08942  2.59566  3.13755  0.17855     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     18   3.43404  0.13010  3.48346  2.82967     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     19   0.14179  3.38107  2.80245  3.28281     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     20   2.94809  3.58857  0.11707  3.49333     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     21   3.08942  2.59566  3.13755  0.17855     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     22   0.14179  3.38107  2.80245  3.28281     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     23   2.94809  3.58857  0.11707  3.49333     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     24   3.43404  0.13010  3.48346  2.82967     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     25   0.14179  3.38107  2.80245  3.28281     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     26   3.08942  2.59566  3.13755  0.17855     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     27   2.94809  3.58857  0.11707  3.49333     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     28   3.43404  0.13010  3.48346  2.82967     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     29   3.08942  2.59566  3.13755  0.17855     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     30   3.08942  2.59566  3.13755  0.17855     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     31   0.14179  3.38107  2.80245  3.28281     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     32   3.08942  2.59566  3.13755  0.17855     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     33   3.43404  0.13010  3.48346  2.82967     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     34   3.08942  2.59566  3.13755  0.17855     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     35   2.94809  3.58857  0.11707  3.49333     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     36   0.14179  3.38107  2.80245  3.28281     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     37   2.94809  3.58857  0.11707  3.49333     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     38   3.08942  2.59566  3.13755  0.17855     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     39   2.94809  3.58857  0.11707  3.49333     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     40   3.08942  2.59566  3.13755  0.17855     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     41   3.43404  0.13010  3.48346  2.82967     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     42   3.08942  2.59566  3.13755  0.17855     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     43   3.43404  0.13010  3.48346  2.82967     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     44   3.08942  2.59566  3.13755  0.17855     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     45   0.14179  3.38107  2.80245  3.28281     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01860  3.99364        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Bacillariophyta_58S_end_eleven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 11:42:57 2012
NSEQ  2
EFFN  2.000000
CKSUM 1905173856
STATS LOCAL MSV       -7.3409  0.72899
STATS LOCAL VITERBI   -8.2416  0.72899
STATS LOCAL FORWARD   -3.1425  0.72899
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.58317  1.38125  1.35645  1.25234
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   1.89532  1.96405  1.06955  1.00436     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.23862  2.84929  2.43386  2.70756     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.81865  0.23582  2.88868  2.35662     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Bacillariophyta_58S_end_five_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 11:42:02 2012
NSEQ  2
EFFN  2.000000
CKSUM 890636672
STATS LOCAL MSV       -7.3435  0.72851
STATS LOCAL VITERBI   -8.2240  0.72851
STATS LOCAL FORWARD   -3.2698  0.72851
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.70415  1.39193  1.19561  1.32067
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.92825  2.28391  0.95698  2.13014     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Bacillariophyta_58S_end_four_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 11:41:55 2012
NSEQ  10
EFFN  3.911133
CKSUM 2203677874
STATS LOCAL MSV       -6.7587  0.71932
STATS LOCAL VITERBI   -7.5461  0.71932
STATS LOCAL FORWARD   -4.0750  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.79364  1.27971  1.26811  1.29402
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  0.00000        *
      1   3.62901  0.10909  3.66977  2.96962      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
      2   3.06354  3.75846  0.10007  3.68147      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
      3   3.62901  0.10909  3.66977  2.96962      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
      4   3.26490  2.70698  3.30619  0.15268      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
      5   2.30468  2.26386  1.44279  0.57983      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
      6   3.62901  0.10909  3.66977  2.96962      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
      7   3.62901  0.10909  3.66977  2.96962      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
      8   0.43462  2.80486  1.50107  2.67242      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
      9   3.06354  3.75846  0.10007  3.68147      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     10   3.06354  3.75846  0.10007  3.68147     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     11   0.12122  3.55145  2.91224  3.46977     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     12   0.57930  2.38745  2.30805  1.39276     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     13   3.26490  2.70698  3.30619  0.15268     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     14   3.26490  2.70698  3.30619  0.15268     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     15   3.26490  2.70698  3.30619  0.15268     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     16   3.62901  0.10909  3.66977  2.96962     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     17   3.62901  0.10909  3.66977  2.96962     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     18   3.26490  2.70698  3.30619  0.15268     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     19   3.06354  3.75846  0.10007  3.68147     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     20   3.06354  3.75846  0.10007  3.68147     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     21   2.21486  2.22095  1.21311  0.72350     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     22   0.12122  3.55145  2.91224  3.46977     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     23   3.06354  3.75846  0.10007  3.68147     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     24   3.62901  0.10909  3.66977  2.96962     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     25   0.12122  3.55145  2.91224  3.46977     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     26   3.26490  2.70698  3.30619  0.15268     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     27   3.06354  3.75846  0.10007  3.68147     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     28   3.62901  0.10909  3.66977  2.96962     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     29   3.26490  2.70698  3.30619  0.15268     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     30   3.26490  2.70698  3.30619  0.15268     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     31   3.06354  3.75846  0.10007  3.68147     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     32   3.26490  2.70698  3.30619  0.15268     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     33   3.62901  0.10909  3.66977  2.96962     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     34   3.26490  2.70698  3.30619  0.15268     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     35   3.06354  3.75846  0.10007  3.68147     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     36   0.12122  3.55145  2.91224  3.46977     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     37   3.06354  3.75846  0.10007  3.68147     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     38   3.26490  2.70698  3.30619  0.15268     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     39   3.06354  3.75846  0.10007  3.68147     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     40   2.56277  1.19555  2.63128  0.60078     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     41   3.62901  0.10909  3.66977  2.96962     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     42   3.62901  0.10909  3.66977  2.96962     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     43   3.06354  3.75846  0.10007  3.68147     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     44   3.62901  0.10909  3.66977  2.96962     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
     45   0.12122  3.55145  2.91224  3.46977     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01678  4.09620        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Bacillariophyta_58S_end_nine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 11:42:40 2012
NSEQ  4
EFFN  3.261719
CKSUM 2263622984
STATS LOCAL MSV       -8.0863  0.71933
STATS LOCAL VITERBI   -7.4913  0.71933
STATS LOCAL FORWARD   -4.0857  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.55533  1.31636  1.38475  1.30791
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  0.00000        *
      1   3.41037  0.13295  3.46079  2.81242      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      2   2.93372  3.56771  0.11938  3.47031      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      3   3.41037  0.13295  3.46079  2.81242      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      4   3.06875  2.58250  3.11766  0.18191      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      5   3.06875  2.58250  3.11766  0.18191      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      6   3.06875  2.58250  3.11766  0.18191      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      7   3.06875  2.58250  3.11766  0.18191      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      8   2.93372  3.56771  0.11938  3.47031      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      9   2.93372  3.56771  0.11938  3.47031      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     10   2.93372  3.56771  0.11938  3.47031     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     11   3.06875  2.58250  3.11766  0.18191     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     12   0.14453  3.36055  2.78910  3.26035     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     13   0.14453  3.36055  2.78910  3.26035     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     14   3.06875  2.58250  3.11766  0.18191     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     15   2.93372  3.56771  0.11938  3.47031     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     16   3.41037  0.13295  3.46079  2.81242     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     17   3.41037  0.13295  3.46079  2.81242     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     18   3.41037  0.13295  3.46079  2.81242     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     19   0.14453  3.36055  2.78910  3.26035     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     20   0.14453  3.36055  2.78910  3.26035     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     21   2.93372  3.56771  0.11938  3.47031     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     22   0.14453  3.36055  2.78910  3.26035     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     23   2.93372  3.56771  0.11938  3.47031     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     24   3.41037  0.13295  3.46079  2.81242     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     25   0.14453  3.36055  2.78910  3.26035     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     26   3.06875  2.58250  3.11766  0.18191     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     27   2.93372  3.56771  0.11938  3.47031     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     28   3.41037  0.13295  3.46079  2.81242     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     29   3.06875  2.58250  3.11766  0.18191     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     30   3.41037  0.13295  3.46079  2.81242     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     31   0.14453  3.36055  2.78910  3.26035     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     32   3.06875  2.58250  3.11766  0.18191     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     33   3.41037  0.13295  3.46079  2.81242     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     34   3.06875  2.58250  3.11766  0.18191     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     35   2.93372  3.56771  0.11938  3.47031     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     36   0.14453  3.36055  2.78910  3.26035     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     37   2.93372  3.56771  0.11938  3.47031     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     38   3.06875  2.58250  3.11766  0.18191     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     39   2.93372  3.56771  0.11938  3.47031     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     40   3.06875  2.58250  3.11766  0.18191     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     41   3.06875  2.58250  3.11766  0.18191     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     42   3.41037  0.13295  3.46079  2.81242     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     43   3.41037  0.13295  3.46079  2.81242     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     44   3.41037  0.13295  3.46079  2.81242     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     45   0.14453  3.36055  2.78910  3.26035     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01883  3.98187        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Bacillariophyta_58S_end_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 11:41:30 2012
NSEQ  59
EFFN  3.647888
CKSUM 3784598376
STATS LOCAL MSV       -7.5123  0.71931
STATS LOCAL VITERBI   -7.6643  0.71931
STATS LOCAL FORWARD   -3.7443  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.05601  1.44140  1.19427  1.10107
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  0.00000        *
      1   3.41829  0.14399  3.46727  2.65739      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
      2   3.01518  3.68691  0.10686  3.60210      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
      3   3.54642  0.11747  3.59094  2.91079      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
      4   3.18936  2.65909  3.23362  0.16325      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
      5   3.18936  2.65909  3.23362  0.16325      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
      6   3.18936  2.65909  3.23362  0.16325      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
      7   3.54642  0.11747  3.59094  2.91079      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
      8   2.77197  3.57920  0.12898  3.48770      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
      9   3.01518  3.68691  0.10686  3.60210      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     10   3.01518  3.68691  0.10686  3.60210     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.11547  4.06867  2.38648  1.46634  0.26236  1.09861  0.40547
     11   0.14684  3.34355  2.77801  3.24176     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99086  3.99086  1.46634  0.26236  0.31622  1.30526
     12   3.18936  2.65909  3.23362  0.16325     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     13   1.98689  2.10855  2.53472  0.41222     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04625  4.06867  3.57210  1.46634  0.26236  1.09861  0.40547
     14   3.17011  2.64688  3.21512  0.16608     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03519  4.05761  4.05761  1.46634  0.26236  0.79626  0.59968
     15   3.18936  2.65909  3.23362  0.16325     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     16   3.54642  0.11747  3.59094  2.91079     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     17   3.54642  0.11747  3.59094  2.91079     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     18   3.22867  0.19096  3.28418  2.33560     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     19   3.01518  3.68691  0.10686  3.60210     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     20   2.46891  3.41562  0.16720  3.31221     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     21   2.58996  2.39964  2.06152  0.34677     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     22   0.12953  3.47895  2.86567  3.39012     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     23   3.01518  3.68691  0.10686  3.60210     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     24   3.54642  0.11747  3.59094  2.91079     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04625  4.06867  3.57210  1.46634  0.26236  1.09861  0.40547
     25   0.13177  3.46027  2.85365  3.36962     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03519  4.05761  4.05761  1.46634  0.26236  0.79626  0.59968
     26   3.18936  2.65909  3.23362  0.16325     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     27   2.50330  3.43570  0.16214  3.33373     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     28   3.54642  0.11747  3.59094  2.91079     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     29   3.18936  2.65909  3.23362  0.16325     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     30   3.18936  2.65909  3.23362  0.16325     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     31   3.01518  3.68691  0.10686  3.60210     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     32   3.18936  2.65909  3.23362  0.16325     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     33   3.35919  0.15748  3.41028  2.55223     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     34   3.18936  2.65909  3.23362  0.16325     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     35   3.01518  3.68691  0.10686  3.60210     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     36   0.12953  3.47895  2.86567  3.39012     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     37   3.01518  3.68691  0.10686  3.60210     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     38   3.18936  2.65909  3.23362  0.16325     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     39   3.01518  3.68691  0.10686  3.60210     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     40   3.18936  2.65909  3.23362  0.16325     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     41   3.54642  0.11747  3.59094  2.91079     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     42   3.18936  2.65909  3.23362  0.16325     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     43   3.01518  3.68691  0.10686  3.60210     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     44   3.05129  2.32303  3.10110  0.21106     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
     45   3.01518  3.68691  0.10686  3.60210     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01755  4.05142        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Bacillariophyta_58S_end_seven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 11:42:22 2012
NSEQ  7
EFFN  3.380371
CKSUM 2693198585
STATS LOCAL MSV       -7.4165  0.71932
STATS LOCAL VITERBI   -7.6098  0.71932
STATS LOCAL FORWARD   -4.0200  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.57825  1.37670  1.37176  1.24621
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  0.00000        *
      1   3.45418  0.12772  3.50274  2.84431      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
      2   2.96025  3.60628  0.11515  3.51289      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
      3   3.45418  0.12772  3.50274  2.84431      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
      4   3.10711  2.60690  3.15456  0.17572      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
      5   3.10711  2.60690  3.15456  0.17572      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
      6   3.10711  2.60690  3.15456  0.17572      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
      7   3.10711  2.60690  3.15456  0.17572      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
      8   2.96025  3.60628  0.11515  3.51289      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
      9   2.96025  3.60628  0.11515  3.51289      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     10   2.96025  3.60628  0.11515  3.51289     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     11   3.10711  2.60690  3.15456  0.17572     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     12   0.13950  3.39856  2.81379  3.30196     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     13   0.13950  3.39856  2.81379  3.30196     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     14   3.10711  2.60690  3.15456  0.17572     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     15   2.96025  3.60628  0.11515  3.51289     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     16   3.45418  0.12772  3.50274  2.84431     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     17   3.45418  0.12772  3.50274  2.84431     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     18   3.45418  0.12772  3.50274  2.84431     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     19   0.13950  3.39856  2.81379  3.30196     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     20   0.13950  3.39856  2.81379  3.30196     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     21   2.96025  3.60628  0.11515  3.51289     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     22   0.13950  3.39856  2.81379  3.30196     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     23   2.96025  3.60628  0.11515  3.51289     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     24   3.45418  0.12772  3.50274  2.84431     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     25   0.13950  3.39856  2.81379  3.30196     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     26   3.10711  2.60690  3.15456  0.17572     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     27   2.96025  3.60628  0.11515  3.51289     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     28   3.45418  0.12772  3.50274  2.84431     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     29   3.10711  2.60690  3.15456  0.17572     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     30   3.10711  2.60690  3.15456  0.17572     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     31   0.13950  3.39856  2.81379  3.30196     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     32   3.10711  2.60690  3.15456  0.17572     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     33   3.45418  0.12772  3.50274  2.84431     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     34   3.10711  2.60690  3.15456  0.17572     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     35   2.96025  3.60628  0.11515  3.51289     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     36   0.13950  3.39856  2.81379  3.30196     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     37   2.96025  3.60628  0.11515  3.51289     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     38   3.10711  2.60690  3.15456  0.17572     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     39   2.96025  3.60628  0.11515  3.51289     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     40   3.10711  2.60690  3.15456  0.17572     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     41   3.45418  0.12772  3.50274  2.84431     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     42   3.45418  0.12772  3.50274  2.84431     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     43   3.45418  0.12772  3.50274  2.84431     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     44   3.10711  2.60690  3.15456  0.17572     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
     45   0.44242  2.71377  1.53569  2.57794     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01842  4.00376        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Bacillariophyta_58S_end_six_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 11:42:15 2012
NSEQ  23
EFFN  4.910522
CKSUM 989768431
STATS LOCAL MSV       -6.8527  0.71932
STATS LOCAL VITERBI   -7.7326  0.71932
STATS LOCAL FORWARD   -4.0652  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.90902  1.42695  1.19558  1.17375
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  0.00000        *
      1   3.88157  0.08732  3.91039  3.14745      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
      2   3.20993  3.97473  0.08224  3.92175      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
      3   3.88157  0.08732  3.91039  3.14745      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
      4   3.50993  2.86404  3.54157  0.12319      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
      5   3.19216  2.03607  3.24025  0.23671      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
      6   3.19429  0.20047  2.53561  2.78965      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
      7   3.88157  0.08732  3.91039  3.14745      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
      8   1.06582  2.19973  1.26269  1.34006      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
      9   3.20993  3.97473  0.08224  3.92175      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     10   3.20993  3.97473  0.08224  3.92175     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     11   0.09879  3.77800  3.05894  3.71889     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     12   3.50993  2.86404  3.54157  0.12319     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     13   3.50993  2.86404  3.54157  0.12319     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     14   3.50993  2.86404  3.54157  0.12319     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     15   3.50993  2.86404  3.54157  0.12319     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     16   3.88157  0.08732  3.91039  3.14745     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     17   3.88157  0.08732  3.91039  3.14745     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     18   2.70043  0.67997  2.76952  1.01198     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     19   3.20993  3.97473  0.08224  3.92175     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     20   3.20993  3.97473  0.08224  3.92175     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     21   2.59948  1.89052  0.34474  2.71373     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     22   0.09879  3.77800  3.05894  3.71889     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     23   3.20993  3.97473  0.08224  3.92175     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     24   3.88157  0.08732  3.91039  3.14745     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     25   0.09879  3.77800  3.05894  3.71889     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     26   3.50993  2.86404  3.54157  0.12319     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     27   3.20993  3.97473  0.08224  3.92175     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     28   3.88157  0.08732  3.91039  3.14745     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     29   2.24774  2.63840  2.99460  0.25770     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     30   3.37000  2.44529  3.40918  0.16742     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     31   3.20993  3.97473  0.08224  3.92175     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     32   3.50993  2.86404  3.54157  0.12319     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     33   2.70934  0.65669  2.77834  1.04210     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     34   3.50993  2.86404  3.54157  0.12319     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     35   3.20993  3.97473  0.08224  3.92175     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     36   0.09879  3.77800  3.05894  3.71889     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     37   3.20993  3.97473  0.08224  3.92175     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     38   3.50993  2.86404  3.54157  0.12319     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     39   3.20993  3.97473  0.08224  3.92175     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     40   3.50993  2.86404  3.54157  0.12319     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     41   2.94893  0.38481  3.01361  1.52366     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     42   0.39990  2.71590  2.54745  1.68638     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     43   3.20993  3.97473  0.08224  3.92175     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     44   2.83838  1.37814  2.90080  0.45499     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
     45   1.25375  2.88872  0.51876  2.75413     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01437  4.25000        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Bacillariophyta_58S_end_ten_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 11:42:48 2012
NSEQ  12
EFFN  3.571289
CKSUM 3994526417
STATS LOCAL MSV       -7.4590  0.71932
STATS LOCAL VITERBI   -7.8349  0.71932
STATS LOCAL FORWARD   -3.7654  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.69655  1.33242  1.35217  1.22360
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  0.00000        *
      1   3.52090  0.12021  3.56655  2.89248      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
      2   3.00009  3.66468  0.10908  3.57747      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
      3   3.52090  0.12021  3.56655  2.89248      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
      4   3.16639  2.64453  3.21155  0.16663      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
      5   3.16639  2.64453  3.21155  0.16663      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
      6   3.52090  0.12021  3.56655  2.89248      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
      7   3.16639  2.64453  3.21155  0.16663      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
      8   3.00009  3.66468  0.10908  3.57747      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
      9   3.00009  3.66468  0.10908  3.57747      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     10   3.00009  3.66468  0.10908  3.57747     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     11   3.16639  2.64453  3.21155  0.16663     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     12   3.16639  2.64453  3.21155  0.16663     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     13   0.13221  3.45665  2.85132  3.36565     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     14   3.16639  2.64453  3.21155  0.16663     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     15   3.16639  2.64453  3.21155  0.16663     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     16   3.52090  0.12021  3.56655  2.89248     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     17   3.52090  0.12021  3.56655  2.89248     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     18   3.52090  0.12021  3.56655  2.89248     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     19   0.13221  3.45665  2.85132  3.36565     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     20   3.00009  3.66468  0.10908  3.57747     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     21   3.00009  3.66468  0.10908  3.57747     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     22   0.13221  3.45665  2.85132  3.36565     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     23   3.00009  3.66468  0.10908  3.57747     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     24   3.52090  0.12021  3.56655  2.89248     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     25   0.13221  3.45665  2.85132  3.36565     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     26   3.16639  2.64453  3.21155  0.16663     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     27   0.13221  3.45665  2.85132  3.36565     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     28   3.52090  0.12021  3.56655  2.89248     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     29   3.16639  2.64453  3.21155  0.16663     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     30   3.16639  2.64453  3.21155  0.16663     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     31   0.13221  3.45665  2.85132  3.36565     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     32   3.16639  2.64453  3.21155  0.16663     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     33   3.52090  0.12021  3.56655  2.89248     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     34   3.16639  2.64453  3.21155  0.16663     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     35   3.00009  3.66468  0.10908  3.57747     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     36   0.20546  3.20130  2.30575  3.09377     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     37   3.00009  3.66468  0.10908  3.57747     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     38   3.16639  2.64453  3.21155  0.16663     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     39   3.00009  3.66468  0.10908  3.57747     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     40   3.16639  2.64453  3.21155  0.16663     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     41   3.52090  0.12021  3.56655  2.89248     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     42   3.52090  0.12021  3.56655  2.89248     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     43   2.54971  0.57954  2.62092  1.24131     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     44   3.00009  3.66468  0.10908  3.57747     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
     45   0.86869  2.55645  0.88355  2.41231     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01779  4.03800        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Bacillariophyta_58S_end_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 11:41:46 2012
NSEQ  5
EFFN  3.647461
CKSUM 282462996
STATS LOCAL MSV       -7.4641  0.71933
STATS LOCAL VITERBI   -7.7880  0.71933
STATS LOCAL FORWARD   -4.3354  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.78844  1.55757  1.15735  1.17826
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  0.00000        *
      1   3.54628  0.11749  3.59080  2.91069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      2   3.01510  3.68679  0.10688  3.60196      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      3   3.54628  0.11749  3.59080  2.91069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      4   3.18923  2.65900  3.23350  0.16327      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      5   3.01510  3.68679  0.10688  3.60196      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      6   3.18923  2.65900  3.23350  0.16327      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      7   3.18923  2.65900  3.23350  0.16327      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      8   3.18923  2.65900  3.23350  0.16327      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      9   3.01510  3.68679  0.10688  3.60196      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     10   3.01510  3.68679  0.10688  3.60196     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     11   3.01510  3.68679  0.10688  3.60196     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     12   0.12954  3.47883  2.86559  3.38998     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     13   0.12954  3.47883  2.86559  3.38998     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     14   3.18923  2.65900  3.23350  0.16327     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     15   3.18923  2.65900  3.23350  0.16327     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     16   3.54628  0.11749  3.59080  2.91069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     17   3.54628  0.11749  3.59080  2.91069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     18   3.18923  2.65900  3.23350  0.16327     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     19   3.01510  3.68679  0.10688  3.60196     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     20   3.01510  3.68679  0.10688  3.60196     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     21   3.54628  0.11749  3.59080  2.91069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     22   0.12954  3.47883  2.86559  3.38998     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     23   3.01510  3.68679  0.10688  3.60196     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     24   3.54628  0.11749  3.59080  2.91069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     25   0.12954  3.47883  2.86559  3.38998     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     26   3.18923  2.65900  3.23350  0.16327     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     27   3.01510  3.68679  0.10688  3.60196     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     28   3.18923  2.65900  3.23350  0.16327     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     29   3.18923  2.65900  3.23350  0.16327     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     30   3.18923  2.65900  3.23350  0.16327     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     31   3.01510  3.68679  0.10688  3.60196     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     32   3.18923  2.65900  3.23350  0.16327     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     33   3.54628  0.11749  3.59080  2.91069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     34   3.18923  2.65900  3.23350  0.16327     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     35   3.01510  3.68679  0.10688  3.60196     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     36   0.12954  3.47883  2.86559  3.38998     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     37   3.01510  3.68679  0.10688  3.60196     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     38   2.50462  1.17407  2.57418  0.62929     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     39   3.01510  3.68679  0.10688  3.60196     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     40   3.18923  2.65900  3.23350  0.16327     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     41   2.50462  1.17407  2.57418  0.62929     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     42   0.12954  3.47883  2.86559  3.38998     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     43   3.01510  3.68679  0.10688  3.60196     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     44   3.54628  0.11749  3.59080  2.91069     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     45   1.12332  2.61913  0.65802  2.47627     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01755  4.05134        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Bacillariophyta_58S_end_twelve_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 11:43:07 2012
NSEQ  4
EFFN  3.191406
CKSUM 292128274
STATS LOCAL MSV       -8.0824  0.71931
STATS LOCAL VITERBI   -7.8114  0.71931
STATS LOCAL FORWARD   -4.1333  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81883  1.38860  1.09146  1.37581
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  0.00000        *
      1   3.38354  0.13628  3.43507  2.79277      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      2   2.91732  3.54398  0.12206  3.44415      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      3   3.38354  0.13628  3.43507  2.79277      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      4   3.04545  2.56765  3.09524  0.18579      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      5   3.04545  2.56765  3.09524  0.18579      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      6   3.38354  0.13628  3.43507  2.79277      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      7   3.38354  0.13628  3.43507  2.79277      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      8   2.91732  3.54398  0.12206  3.44415      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      9   2.91732  3.54398  0.12206  3.44415      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     10   2.91732  3.54398  0.12206  3.44415     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     11   0.14770  3.33730  2.77393  3.23493     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     12   0.14770  3.33730  2.77393  3.23493     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     13   0.14770  3.33730  2.77393  3.23493     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     14   3.04545  2.56765  3.09524  0.18579     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     15   2.91732  3.54398  0.12206  3.44415     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     16   3.38354  0.13628  3.43507  2.79277     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     17   3.38354  0.13628  3.43507  2.79277     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     18   3.38354  0.13628  3.43507  2.79277     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     19   2.91732  3.54398  0.12206  3.44415     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     20   2.91732  3.54398  0.12206  3.44415     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     21   3.04545  2.56765  3.09524  0.18579     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     22   0.14770  3.33730  2.77393  3.23493     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     23   2.91732  3.54398  0.12206  3.44415     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     24   3.38354  0.13628  3.43507  2.79277     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     25   0.14770  3.33730  2.77393  3.23493     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     26   3.04545  2.56765  3.09524  0.18579     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     27   2.91732  3.54398  0.12206  3.44415     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     28   3.38354  0.13628  3.43507  2.79277     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     29   3.38354  0.13628  3.43507  2.79277     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     30   3.04545  2.56765  3.09524  0.18579     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     31   2.91732  3.54398  0.12206  3.44415     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     32   2.91732  3.54398  0.12206  3.44415     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     33   3.04545  2.56765  3.09524  0.18579     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     34   3.04545  2.56765  3.09524  0.18579     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     35   2.91732  3.54398  0.12206  3.44415     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     36   0.14770  3.33730  2.77393  3.23493     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     37   2.91732  3.54398  0.12206  3.44415     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     38   3.04545  2.56765  3.09524  0.18579     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     39   2.91732  3.54398  0.12206  3.44415     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     40   3.04545  2.56765  3.09524  0.18579     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     41   3.04545  2.56765  3.09524  0.18579     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     42   3.38354  0.13628  3.43507  2.79277     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     43   2.91732  3.54398  0.12206  3.44415     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     44   3.04545  2.56765  3.09524  0.18579     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     45   2.91732  3.54398  0.12206  3.44415     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01908  3.96867        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Bacillariophyta_58S_end_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 11:41:39 2012
NSEQ  2
EFFN  2.000000
CKSUM 3128468991
STATS LOCAL MSV       -7.4839  0.72820
STATS LOCAL VITERBI   -8.3885  0.72820
STATS LOCAL FORWARD   -3.5934  0.72820
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.65400  1.65338  1.16290  1.18831
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   0.23862  2.84929  2.43386  2.70756      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.57915  2.25909  2.64442  0.28946     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.57915  2.25909  2.64442  0.28946     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Bacillariophyta_58S_start_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Oct  1 02:11:41 2011
NSEQ  144
EFFN  6.077637
CKSUM 1030745055
STATS LOCAL MSV       -6.8970  0.71932
STATS LOCAL VITERBI   -7.5686  0.71932
STATS LOCAL FORWARD   -4.3787  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.22465  1.36279  1.47544  1.50726
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  0.00000        *
      1   3.99350  0.09233  4.01872  2.96069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
      2   0.26673  2.37689  2.76416  2.54783      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.41614  3.73066  1.46634  0.26236  1.09861  0.40547
      3   0.08397  3.95853  3.18118  3.91647      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.02476  4.40417  4.40417  1.46634  0.26236  0.69698  0.68932
      4   4.08931  0.07282  4.10855  3.29556      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
      5   3.60874  2.54724  3.63979  0.14115      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
      6   2.81521  2.90569  3.46061  0.15784      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.41614  3.73066  1.46634  0.26236  1.09861  0.40547
      7   3.71512  3.00075  3.73903  0.10301      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.02476  4.40417  4.40417  1.46634  0.26236  0.69698  0.68932
      8   3.49880  0.21228  3.54875  2.02290      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
      9   0.20606  3.57886  2.05667  3.49231      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     10   2.29832  3.79341  0.15934  3.71548     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     11   3.78938  0.13609  3.82622  2.49087     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     12   0.79345  2.47005  1.14686  1.92755     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     13   0.64077  1.89059  1.47582  2.36937     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     14   3.00490  1.28502  3.06513  0.46655     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     15   3.33504  4.15230  0.07002  4.11774     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     16   3.33504  4.15230  0.07002  4.11774     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     17   0.08289  3.97284  3.19122  3.93205     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     18   3.73173  3.01214  3.75504  0.10152     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     19   3.33504  4.15230  0.07002  4.11774     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     20   3.73173  3.01214  3.75504  0.10152     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     21   4.08931  0.07282  4.10855  3.29556     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     22   2.40870  2.82458  3.26662  0.20752     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     23   0.50152  2.68344  2.57692  1.38607     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     24   2.56134  3.92766  0.12541  3.86462     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     25   3.33504  4.15230  0.07002  4.11774     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     26   1.84788  1.37699  1.54968  0.97345     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     27   3.73173  3.01214  3.75504  0.10152     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     28   3.93022  0.09244  3.54057  3.22740     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     29   3.23546  0.14449  3.66947  2.66353     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     30   3.77053  0.11478  3.15435  3.15272     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     31   0.10083  3.91055  2.90290  3.86225     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     32   2.95075  0.23869  2.49016  2.56212     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     33   0.16976  2.61407  3.00452  3.40117     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     34   0.22861  3.21085  2.88206  2.22547     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     35   3.90913  0.10987  3.93940  2.74061     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     36   2.56134  3.92766  0.12541  3.86462     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     37   0.08289  3.97284  3.19122  3.93205     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     38   3.73173  3.01214  3.75504  0.10152     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.02827  4.41614  4.14791  1.46634  0.26236  1.09861  0.40547
     39   3.22610  3.89440  0.10656  3.19397     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.02455  4.41242  4.41242  1.46634  0.26236  0.92801  0.50309
     40   0.08289  3.97284  3.19122  3.93205     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     41   0.15880  3.55611  2.73128  2.93474     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     42   3.30078  4.06617  0.08187  3.70475     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     43   0.09762  3.87464  3.15684  3.51704     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     44   0.08289  3.97284  3.19122  3.93205     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
     45   3.80347  0.13290  3.83957  2.51762     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01230  4.40399        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Bacillariophyta_4_LSU_start_five_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 11:59:52 2012
NSEQ  5
EFFN  3.657227
CKSUM 2111448149
STATS LOCAL MSV       -7.6920  0.71932
STATS LOCAL VITERBI   -7.6476  0.71932
STATS LOCAL FORWARD   -3.8455  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.20593  1.21862  1.62039  1.57443
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  0.00000        *
      1   3.54949  0.11715  3.59387  2.91298      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
      2   3.54949  0.11715  3.59387  2.91298      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
      3   3.54949  0.11715  3.59387  2.91298      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
      4   3.19213  2.66084  3.23628  0.16285      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
      5   3.01699  3.68957  0.10660  3.60505      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
      6   0.12921  3.48163  2.86740  3.39306      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
      7   3.19213  2.66084  3.23628  0.16285      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
      8   3.54949  0.11715  3.59387  2.91298      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
      9   3.19213  2.66084  3.23628  0.16285      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     10   3.54949  0.11715  3.59387  2.91298     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     11   0.12921  3.48163  2.86740  3.39306     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     12   3.01699  3.68957  0.10660  3.60505     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     13   3.54949  0.11715  3.59387  2.91298     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     14   3.19213  2.66084  3.23628  0.16285     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     15   3.54949  0.11715  3.59387  2.91298     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     16   0.12921  3.48163  2.86740  3.39306     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     17   0.12921  3.48163  2.86740  3.39306     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     18   0.12921  3.48163  2.86740  3.39306     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     19   3.54949  0.11715  3.59387  2.91298     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     20   0.12921  3.48163  2.86740  3.39306     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     21   0.12921  3.48163  2.86740  3.39306     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     22   3.01699  3.68957  0.10660  3.60505     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     23   3.01699  3.68957  0.10660  3.60505     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     24   2.14931  2.23541  0.80168  1.11501     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     25   2.14931  2.23541  0.80168  1.11501     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     26   0.12921  3.48163  2.86740  3.39306     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     27   3.54949  0.11715  3.59387  2.91298     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     28   3.54949  0.11715  3.59387  2.91298     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     29   3.54949  0.11715  3.59387  2.91298     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     30   3.01699  3.68957  0.10660  3.60505     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     31   3.54949  0.11715  3.59387  2.91298     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     32   3.19213  2.66084  3.23628  0.16285     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     33   3.01699  3.68957  0.10660  3.60505     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     34   0.12921  3.48163  2.86740  3.39306     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     35   0.12921  3.48163  2.86740  3.39306     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     36   2.48946  0.73109  2.56123  1.02596     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     37   3.19213  2.66084  3.23628  0.16285     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     38   3.19213  2.66084  3.23628  0.16285     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     39   0.12921  3.48163  2.86740  3.39306     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     40   0.12921  3.48163  2.86740  3.39306     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     41   3.01699  3.68957  0.10660  3.60505     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     42   3.54949  0.11715  3.59387  2.91298     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     43   0.12921  3.48163  2.86740  3.39306     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     44   3.19213  2.66084  3.23628  0.16285     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
     45   0.12921  3.48163  2.86740  3.39306     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01752  4.05304        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Bacillariophyta_4_LSU_start_four_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 11:59:43 2012
NSEQ  2
EFFN  2.000000
CKSUM 3289991583
STATS LOCAL MSV       -7.5573  0.72794
STATS LOCAL VITERBI   -8.1212  0.72794
STATS LOCAL FORWARD   -3.3703  0.72794
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.23978  1.40458  1.43017  1.48805
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Bacillariophyta_4_LSU_start_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 11:59:19 2012
NSEQ  40
EFFN  3.999023
CKSUM 706348853
STATS LOCAL MSV       -7.2263  0.71931
STATS LOCAL VITERBI   -7.6120  0.71931
STATS LOCAL FORWARD   -3.8186  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.14058  1.36426  1.52942  1.56957
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  0.00000        *
      1   2.44979  2.56427  2.94985  0.24288      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
      2   2.54426  1.07425  2.61378  0.67992      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
      3   3.50322  0.13678  3.54889  2.67387      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
      4   2.20358  2.29709  0.74699  1.15439      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
      5   3.07859  3.78078  0.09805  3.70627      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
      6   0.15910  3.34062  2.82940  2.94454      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
      7   3.28900  2.72228  3.32934  0.14947      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
      8   3.65491  0.10660  3.69447  2.98796      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
      9   3.28900  2.72228  3.32934  0.14947      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     10   3.65491  0.10660  3.69447  2.98796     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     11   0.11873  3.57431  2.92691  3.49490     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     12   3.07859  3.78078  0.09805  3.70627     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     13   0.30331  2.14137  2.57045  2.69362     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     14   3.28900  2.72228  3.32934  0.14947     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     15   3.65491  0.10660  3.69447  2.98796     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     16   0.11873  3.57431  2.92691  3.49490     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     17   0.11873  3.57431  2.92691  3.49490     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     18   3.07859  3.78078  0.09805  3.70627     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     19   3.43616  0.15164  3.48450  2.55302     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     20   0.11873  3.57431  2.92691  3.49490     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     21   0.11873  3.57431  2.92691  3.49490     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     22   3.07859  3.78078  0.09805  3.70627     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     23   0.14321  3.47772  2.67523  3.39148     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     24   1.21241  2.20089  0.91483  1.65428     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     25   3.07859  3.78078  0.09805  3.70627     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     26   0.11873  3.57431  2.92691  3.49490     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     27   3.65491  0.10660  3.69447  2.98796     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     28   3.65491  0.10660  3.69447  2.98796     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     29   3.65491  0.10660  3.69447  2.98796     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     30   3.07859  3.78078  0.09805  3.70627     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     31   3.65491  0.10660  3.69447  2.98796     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     32   3.18188  0.22051  3.23916  2.14400     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     33   3.07859  3.78078  0.09805  3.70627     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     34   0.11873  3.57431  2.92691  3.49490     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     35   0.11873  3.57431  2.92691  3.49490     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     36   3.28900  2.72228  3.32934  0.14947     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     37   3.28900  2.72228  3.32934  0.14947     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     38   3.28900  2.72228  3.32934  0.14947     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     39   0.11873  3.57431  2.92691  3.49490     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     40   0.11873  3.57431  2.92691  3.49490     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     41   3.07859  3.78078  0.09805  3.70627     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     42   3.65491  0.10660  3.69447  2.98796     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     43   0.11873  3.57431  2.92691  3.49490     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     44   3.28900  2.72228  3.32934  0.14947     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
     45   0.11873  3.57431  2.92691  3.49490     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01653  4.11071        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Bacillariophyta_4_LSU_start_six_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 12:00:01 2012
NSEQ  2
EFFN  2.000000
CKSUM 274407066
STATS LOCAL MSV       -7.5697  0.72844
STATS LOCAL VITERBI   -7.9859  0.72844
STATS LOCAL FORWARD   -3.2875  0.72844
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.14546  1.45292  1.63473  1.37424
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   0.23862  2.84929  2.43386  2.70756     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Bacillariophyta_4_LSU_start_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 11:59:35 2012
NSEQ  15
EFFN  3.643799
CKSUM 2793155846
STATS LOCAL MSV       -7.7992  0.71932
STATS LOCAL VITERBI   -7.4552  0.71932
STATS LOCAL FORWARD   -3.9887  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.10595  1.60246  1.61822  1.31136
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  0.00000        *
      1   3.18815  2.65832  3.23245  0.16343      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
      2   0.12967  3.47777  2.86492  3.38883      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
      3   3.18815  2.65832  3.23245  0.16343      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
      4   3.01439  3.68574  0.10698  3.60080      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
      5   1.33274  2.70507  0.52349  2.56483      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
      6   0.12967  3.47777  2.86492  3.38883      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
      7   3.18815  2.65832  3.23245  0.16343      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
      8   3.54508  0.11761  3.58965  2.90982      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
      9   3.18815  2.65832  3.23245  0.16343      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     10   3.54508  0.11761  3.58965  2.90982     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     11   0.12967  3.47777  2.86492  3.38883     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     12   3.01439  3.68574  0.10698  3.60080     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     13   0.12967  3.47777  2.86492  3.38883     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     14   3.18815  2.65832  3.23245  0.16343     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     15   3.18815  2.65832  3.23245  0.16343     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     16   0.51418  2.68429  1.36497  2.54654     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     17   0.12967  3.47777  2.86492  3.38883     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     18   3.01439  3.68574  0.10698  3.60080     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     19   3.18815  2.65832  3.23245  0.16343     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     20   0.12967  3.47777  2.86492  3.38883     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     21   0.12967  3.47777  2.86492  3.38883     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     22   3.01439  3.68574  0.10698  3.60080     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     23   0.12967  3.47777  2.86492  3.38883     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     24   3.54508  0.11761  3.58965  2.90982     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     25   3.18815  2.65832  3.23245  0.16343     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     26   0.12967  3.47777  2.86492  3.38883     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     27   3.54508  0.11761  3.58965  2.90982     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     28   3.54508  0.11761  3.58965  2.90982     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     29   3.54508  0.11761  3.58965  2.90982     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     30   3.01439  3.68574  0.10698  3.60080     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     31   3.54508  0.11761  3.58965  2.90982     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     32   2.74213  1.70504  2.80382  0.36640     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     33   3.01439  3.68574  0.10698  3.60080     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     34   0.12967  3.47777  2.86492  3.38883     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     35   0.12967  3.47777  2.86492  3.38883     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     36   3.18815  2.65832  3.23245  0.16343     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     37   3.18815  2.65832  3.23245  0.16343     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     38   3.18815  2.65832  3.23245  0.16343     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     39   0.12967  3.47777  2.86492  3.38883     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     40   0.12967  3.47777  2.86492  3.38883     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     41   3.01439  3.68574  0.10698  3.60080     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     42   3.54508  0.11761  3.58965  2.90982     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     43   0.12967  3.47777  2.86492  3.38883     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     44   3.18815  2.65832  3.23245  0.16343     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
     45   0.12967  3.47777  2.86492  3.38883     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01756  4.05071        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Bacillariophyta_4_LSU_start_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 11:59:28 2012
NSEQ  2
EFFN  2.000000
CKSUM 53972170
STATS LOCAL MSV       -7.5197  0.72823
STATS LOCAL VITERBI   -8.1408  0.72823
STATS LOCAL FORWARD   -3.1060  0.72823
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.19216  1.39756  1.56314  1.42812
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Bacillariophyta_1_SSU_end_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Oct  1 01:59:06 2011
NSEQ  44
EFFN  3.225342
CKSUM 3533706599
STATS LOCAL MSV       -8.0048  0.71933
STATS LOCAL VITERBI   -7.6830  0.71933
STATS LOCAL FORWARD   -4.1089  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27189  1.62644  1.24659  1.44567
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  0.00000        *
      1   0.14615  3.34859  2.78130  3.24727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
      2   2.92530  3.55551  0.12075  3.45686      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
      3   3.05675  2.57485  3.10612  0.18390      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
      4   3.39657  0.13465  3.44756  2.80232      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
      5   2.92530  3.55551  0.12075  3.45686      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
      6   3.05675  2.57485  3.10612  0.18390      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
      7   0.14615  3.34859  2.78130  3.24727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
      8   0.14615  3.34859  2.78130  3.24727      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
      9   3.39657  0.13465  3.44756  2.80232      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     10   0.14615  3.34859  2.78130  3.24727     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     11   0.14615  3.34859  2.78130  3.24727     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     12   2.92530  3.55551  0.12075  3.45686     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     13   2.92530  3.55551  0.12075  3.45686     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     14   3.05675  2.57485  3.10612  0.18390     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     15   3.05675  2.57485  3.10612  0.18390     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     16   3.05675  2.57485  3.10612  0.18390     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     17   3.39657  0.13465  3.44756  2.80232     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     18   3.39657  0.13465  3.44756  2.80232     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     19   2.92530  3.55551  0.12075  3.45686     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     20   3.05675  2.57485  3.10612  0.18390     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     21   0.14615  3.34859  2.78130  3.24727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     22   2.92530  3.55551  0.12075  3.45686     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     23   2.92530  3.55551  0.12075  3.45686     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     24   3.05675  2.57485  3.10612  0.18390     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     25   2.92530  3.55551  0.12075  3.45686     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     26   0.14615  3.34859  2.78130  3.24727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     27   0.14615  3.34859  2.78130  3.24727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     28   3.39657  0.13465  3.44756  2.80232     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     29   3.39657  0.13465  3.44756  2.80232     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     30   3.05675  2.57485  3.10612  0.18390     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     31   2.92530  3.55551  0.12075  3.45686     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     32   3.39657  0.13465  3.44756  2.80232     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     33   2.92530  3.55551  0.12075  3.45686     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     34   2.92530  3.55551  0.12075  3.45686     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     35   0.14615  3.34859  2.78130  3.24727     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     36   0.14615  3.34859  2.78130  3.24727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     37   2.92530  3.55551  0.12075  3.45686     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     38   2.92530  3.55551  0.12075  3.45686     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     39   0.14615  3.34859  2.78130  3.24727     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     40   3.05675  2.57485  3.10612  0.18390     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     41   3.39657  0.13465  3.44756  2.80232     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     42   0.14615  3.34859  2.78130  3.24727     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     43   3.05675  2.57485  3.10612  0.18390     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     44   3.05675  2.57485  3.10612  0.18390     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
     45   0.14615  3.34859  2.78130  3.24727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01896  3.97506        *  1.46634  0.26236  0.00000        *
//