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view ITSx_db/HMMs/I.hmm @ 1:b433586432d7 draft
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| author | okorol |
|---|---|
| date | Tue, 24 Mar 2015 16:18:36 -0400 |
| parents | f82c70f54bd7 |
| children |
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HMMER3/b [3.0 | March 2010] NAME 3_End_Phaeophyceae_58S_end_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 12:12:36 2012 NSEQ 157 EFFN 3.732391 CKSUM 82106143 STATS LOCAL MSV -6.9907 0.71931 STATS LOCAL VITERBI -7.6013 0.71931 STATS LOCAL FORWARD -3.9860 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.91751 1.41520 1.11917 1.26019 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 0.00000 * 1 3.57378 0.11461 3.61706 2.93034 1 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 2 3.03127 3.71067 0.10455 3.62844 2 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 3 3.57378 0.11461 3.61706 2.93034 3 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 4 3.21417 2.67481 3.25746 0.15969 4 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 5 3.21417 2.67481 3.25746 0.15969 5 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 6 3.57378 0.11461 3.61706 2.93034 6 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 7 3.57378 0.11461 3.61706 2.93034 7 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 8 3.03127 3.71067 0.10455 3.62844 8 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 9 3.03127 3.71067 0.10455 3.62844 9 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 10 3.03127 3.71067 0.10455 3.62844 10 - - 1.38629 1.38629 1.38629 1.38629 0.04253 4.08301 3.69765 1.46634 0.26236 1.09861 0.40547 11 0.15619 3.32897 2.80495 3.03107 11 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07506 4.07506 1.46634 0.26236 0.85884 0.55105 12 1.83744 2.35418 2.56143 0.40256 12 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 13 0.12671 3.50290 2.88107 3.41642 13 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 14 2.61652 1.41576 2.68268 0.48480 14 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 15 2.01308 1.45171 1.26036 1.05354 15 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 16 3.57378 0.11461 3.61706 2.93034 16 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 17 3.57378 0.11461 3.61706 2.93034 17 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 18 3.14605 2.49866 3.19205 0.18189 18 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 19 3.03127 3.71067 0.10455 3.62844 19 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 20 3.03127 3.71067 0.10455 3.62844 20 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 21 3.03127 3.71067 0.10455 3.62844 21 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 22 0.12671 3.50290 2.88107 3.41642 22 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 23 2.90108 3.65700 0.11528 3.57161 23 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 24 3.57378 0.11461 3.61706 2.93034 24 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 25 0.12671 3.50290 2.88107 3.41642 25 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 26 3.21417 2.67481 3.25746 0.15969 26 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 27 3.03127 3.71067 0.10455 3.62844 27 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 28 3.57378 0.11461 3.61706 2.93034 28 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 29 3.21417 2.67481 3.25746 0.15969 29 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 30 3.21417 2.67481 3.25746 0.15969 30 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 31 3.03127 3.71067 0.10455 3.62844 31 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 32 3.21417 2.67481 3.25746 0.15969 32 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 33 3.35782 0.16081 3.40896 2.51757 33 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 34 3.03127 3.71067 0.10455 3.62844 34 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 35 3.03127 3.71067 0.10455 3.62844 35 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 36 0.12671 3.50290 2.88107 3.41642 36 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 37 3.03127 3.71067 0.10455 3.62844 37 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 38 3.21417 2.67481 3.25746 0.15969 38 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 39 3.03127 3.71067 0.10455 3.62844 39 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 40 3.21417 2.67481 3.25746 0.15969 40 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 41 3.57378 0.11461 3.61706 2.93034 41 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 42 3.16360 2.54221 3.20887 0.17598 42 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 43 2.85217 3.63521 0.11976 3.54831 43 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 44 3.03385 2.24171 3.08462 0.22333 44 - - 1.38629 1.38629 1.38629 1.38629 0.03429 4.08301 4.08301 1.46634 0.26236 1.09861 0.40547 45 2.90903 2.47911 3.09147 0.20307 45 - - 1.38629 1.38629 1.38629 1.38629 0.01729 4.06601 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Phaeophyceae_58S_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Oct 9 00:13:57 2011 NSEQ 4 EFFN 3.082031 CKSUM 3550826365 STATS LOCAL MSV -8.1048 0.71931 STATS LOCAL VITERBI -7.8658 0.71931 STATS LOCAL FORWARD -3.8411 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.71271 1.47634 0.90619 1.67615 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 0.00000 * 1 3.34045 0.14183 3.39374 2.76103 1 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 2 2.89070 3.50572 0.12655 3.40205 2 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 3 3.34045 0.14183 3.39374 2.76103 3 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 4 3.00834 2.54393 3.05952 0.19218 4 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 5 3.34045 0.14183 3.39374 2.76103 5 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 6 3.34045 0.14183 3.39374 2.76103 6 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 7 3.34045 0.14183 3.39374 2.76103 7 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 8 2.89070 3.50572 0.12655 3.40205 8 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 9 2.89070 3.50572 0.12655 3.40205 9 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 10 2.89070 3.50572 0.12655 3.40205 10 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 11 0.15297 3.30004 2.74948 3.19422 11 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 12 3.00834 2.54393 3.05952 0.19218 12 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 13 0.15297 3.30004 2.74948 3.19422 13 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 14 3.00834 2.54393 3.05952 0.19218 14 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 15 2.89070 3.50572 0.12655 3.40205 15 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 16 3.34045 0.14183 3.39374 2.76103 16 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 17 3.34045 0.14183 3.39374 2.76103 17 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 18 3.00834 2.54393 3.05952 0.19218 18 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 19 2.89070 3.50572 0.12655 3.40205 19 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 20 2.89070 3.50572 0.12655 3.40205 20 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 21 2.89070 3.50572 0.12655 3.40205 21 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 22 0.15297 3.30004 2.74948 3.19422 22 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 23 2.89070 3.50572 0.12655 3.40205 23 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 24 3.34045 0.14183 3.39374 2.76103 24 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 25 0.15297 3.30004 2.74948 3.19422 25 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 26 3.00834 2.54393 3.05952 0.19218 26 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 27 2.89070 3.50572 0.12655 3.40205 27 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 28 3.34045 0.14183 3.39374 2.76103 28 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 29 3.00834 2.54393 3.05952 0.19218 29 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 30 3.00834 2.54393 3.05952 0.19218 30 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 31 2.89070 3.50572 0.12655 3.40205 31 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 32 3.00834 2.54393 3.05952 0.19218 32 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 33 3.34045 0.14183 3.39374 2.76103 33 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 34 2.89070 3.50572 0.12655 3.40205 34 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 35 2.89070 3.50572 0.12655 3.40205 35 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 36 2.89070 3.50572 0.12655 3.40205 36 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 37 2.89070 3.50572 0.12655 3.40205 37 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 38 0.15297 3.30004 2.74948 3.19422 38 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 39 2.89070 3.50572 0.12655 3.40205 39 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 40 2.89070 3.50572 0.12655 3.40205 40 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 41 0.15297 3.30004 2.74948 3.19422 41 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 42 2.89070 3.50572 0.12655 3.40205 42 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 43 2.89070 3.50572 0.12655 3.40205 43 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 44 0.15297 3.30004 2.74948 3.19422 44 - - 1.38629 1.38629 1.38629 1.38629 0.03860 3.96690 3.96690 1.46634 0.26236 1.09861 0.40547 45 2.89070 3.50572 0.12655 3.40205 45 - - 1.38629 1.38629 1.38629 1.38629 0.01949 3.94778 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Phaeophyceae_58S_start_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sun Oct 9 00:07:52 2011 NSEQ 172 EFFN 3.414490 CKSUM 3324807830 STATS LOCAL MSV -7.5493 0.71932 STATS LOCAL VITERBI -7.7980 0.71932 STATS LOCAL FORWARD -4.1200 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.23334 1.32585 1.45069 1.56687 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 0.00000 * 1 0.13813 3.40921 2.82069 3.31363 1 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 2 0.13813 3.40921 2.82069 3.31363 2 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 3 0.13813 3.40921 2.82069 3.31363 3 - - 1.38629 1.38629 1.38629 1.38629 0.03957 4.02794 3.86405 1.46634 0.26236 1.09861 0.40547 4 3.46006 0.12704 3.50837 2.84857 4 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02476 4.02476 1.46634 0.26236 0.99239 0.46313 5 3.11793 2.61377 3.16496 0.17402 5 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 6 3.11793 2.61377 3.16496 0.17402 6 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 7 3.11793 2.61377 3.16496 0.17402 7 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 8 3.46644 0.12630 3.51447 2.85320 8 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 9 0.13813 3.40921 2.82069 3.31363 9 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 10 2.96761 3.61705 0.11400 3.52478 10 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 11 3.46644 0.12630 3.51447 2.85320 11 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 12 2.96761 3.61705 0.11400 3.52478 12 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 13 0.13813 3.40921 2.82069 3.31363 13 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 14 3.46644 0.12630 3.51447 2.85320 14 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 15 2.96761 3.61705 0.11400 3.52478 15 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 16 2.96761 3.61705 0.11400 3.52478 16 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 17 0.13813 3.40921 2.82069 3.31363 17 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 18 3.11793 2.61377 3.16496 0.17402 18 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 19 2.75768 3.33183 0.16194 2.98898 19 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 20 3.11793 2.61377 3.16496 0.17402 20 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 21 3.40356 0.13949 3.45347 2.72863 21 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 22 3.11793 2.61377 3.16496 0.17402 22 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 23 3.11793 2.61377 3.16496 0.17402 23 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 24 2.96761 3.61705 0.11400 3.52478 24 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 25 2.96761 3.61705 0.11400 3.52478 25 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 26 3.46644 0.12630 3.51447 2.85320 26 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 27 3.11793 2.61377 3.16496 0.17402 27 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 28 3.40356 0.13949 3.45347 2.72863 28 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 29 3.46644 0.12630 3.51447 2.85320 29 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 30 3.24911 0.16062 3.09989 2.74076 30 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 31 0.19055 2.85099 2.70211 3.02323 31 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 32 3.46644 0.12630 3.51447 2.85320 32 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 33 0.38905 2.58578 2.40246 1.85488 33 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 34 0.13813 3.40921 2.82069 3.31363 34 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 35 3.46644 0.12630 3.51447 2.85320 35 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 36 2.96761 3.61705 0.11400 3.52478 36 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 37 0.16251 3.10809 2.76286 3.16548 37 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 38 3.11793 2.61377 3.16496 0.17402 38 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 39 2.96761 3.61705 0.11400 3.52478 39 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 40 0.13813 3.40921 2.82069 3.31363 40 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 41 0.13813 3.40921 2.82069 3.31363 41 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 42 2.84865 3.56389 0.12488 3.46916 42 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 43 0.17679 2.96825 2.73119 3.08982 43 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 44 0.13813 3.40921 2.82069 3.31363 44 - - 1.38629 1.38629 1.38629 1.38629 0.03627 4.02794 4.02794 1.46634 0.26236 1.09861 0.40547 45 3.46644 0.12630 3.51447 2.85320 45 - - 1.38629 1.38629 1.38629 1.38629 0.01830 4.00996 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Phaeophyceae_4_LSU_start_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 12:15:29 2012 NSEQ 48 EFFN 3.231445 CKSUM 2699152105 STATS LOCAL MSV -8.2524 0.71932 STATS LOCAL VITERBI -7.5362 0.71932 STATS LOCAL FORWARD -3.9900 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.22159 1.33002 1.44966 1.57931 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 0.00000 * 1 3.05877 2.57614 3.10806 0.18356 1 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 2 3.05877 2.57614 3.10806 0.18356 2 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 3 3.39890 0.13436 3.44980 2.80403 3 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 4 2.92673 3.55757 0.12052 3.45913 4 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 5 2.92673 3.55757 0.12052 3.45913 5 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 6 0.16986 3.26223 2.58526 3.15740 6 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 7 3.39890 0.13436 3.44980 2.80403 7 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 8 3.39890 0.13436 3.44980 2.80403 8 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 9 3.05877 2.57614 3.10806 0.18356 9 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 10 3.39890 0.13436 3.44980 2.80403 10 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 11 3.39890 0.13436 3.44980 2.80403 11 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 12 2.92673 3.55757 0.12052 3.45913 12 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 13 0.14587 3.35060 2.78262 3.24948 13 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 14 3.05877 2.57614 3.10806 0.18356 14 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 15 3.39890 0.13436 3.44980 2.80403 15 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 16 0.14587 3.35060 2.78262 3.24948 16 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 17 0.14587 3.35060 2.78262 3.24948 17 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 18 2.71470 3.45506 0.14251 3.35200 18 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 19 3.39890 0.13436 3.44980 2.80403 19 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 20 0.14587 3.35060 2.78262 3.24948 20 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 21 0.14587 3.35060 2.78262 3.24948 21 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 22 2.92673 3.55757 0.12052 3.45913 22 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 23 0.14587 3.35060 2.78262 3.24948 23 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 24 2.92673 3.55757 0.12052 3.45913 24 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 25 2.92673 3.55757 0.12052 3.45913 25 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 26 0.14587 3.35060 2.78262 3.24948 26 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 27 3.39890 0.13436 3.44980 2.80403 27 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 28 3.39890 0.13436 3.44980 2.80403 28 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 29 3.39890 0.13436 3.44980 2.80403 29 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 30 2.92673 3.55757 0.12052 3.45913 30 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 31 3.39890 0.13436 3.44980 2.80403 31 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 32 3.05877 2.57614 3.10806 0.18356 32 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 33 2.92673 3.55757 0.12052 3.45913 33 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 34 0.14587 3.35060 2.78262 3.24948 34 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 35 0.14587 3.35060 2.78262 3.24948 35 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 36 3.05877 2.57614 3.10806 0.18356 36 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 37 3.05877 2.57614 3.10806 0.18356 37 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 38 3.05877 2.57614 3.10806 0.18356 38 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 39 0.14587 3.35060 2.78262 3.24948 39 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 40 0.14587 3.35060 2.78262 3.24948 40 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 41 2.92673 3.55757 0.12052 3.45913 41 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 42 3.39890 0.13436 3.44980 2.80403 42 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 43 0.14587 3.35060 2.78262 3.24948 43 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 44 3.05877 2.57614 3.10806 0.18356 44 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99479 3.99479 1.46634 0.26236 1.09861 0.40547 45 0.14587 3.35060 2.78262 3.24948 45 - - 1.38629 1.38629 1.38629 1.38629 0.01893 3.97621 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Phaeophyceae_1_SSU_end_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 12:07:06 2012 NSEQ 89 EFFN 3.229401 CKSUM 1632466499 STATS LOCAL MSV -8.0048 0.71932 STATS LOCAL VITERBI -7.6816 0.71932 STATS LOCAL FORWARD -4.1101 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27187 1.62651 1.24657 1.44566 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 0.00000 * 1 0.14597 3.34993 2.78218 3.24874 1 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 2 2.92625 3.55688 0.12059 3.45837 2 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 3 3.05809 2.57571 3.10741 0.18367 3 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 4 3.39812 0.13446 3.44905 2.80346 4 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 5 2.92625 3.55688 0.12059 3.45837 5 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 6 3.05809 2.57571 3.10741 0.18367 6 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 7 0.14597 3.34993 2.78218 3.24874 7 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 8 0.14597 3.34993 2.78218 3.24874 8 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 9 3.39812 0.13446 3.44905 2.80346 9 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 10 0.14597 3.34993 2.78218 3.24874 10 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 11 0.14597 3.34993 2.78218 3.24874 11 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 12 2.92625 3.55688 0.12059 3.45837 12 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 13 2.92625 3.55688 0.12059 3.45837 13 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 14 3.05809 2.57571 3.10741 0.18367 14 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 15 3.05809 2.57571 3.10741 0.18367 15 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 16 3.05809 2.57571 3.10741 0.18367 16 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 17 3.39812 0.13446 3.44905 2.80346 17 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 18 3.39812 0.13446 3.44905 2.80346 18 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 19 2.92625 3.55688 0.12059 3.45837 19 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 20 3.05809 2.57571 3.10741 0.18367 20 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 21 0.14597 3.34993 2.78218 3.24874 21 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 22 2.92625 3.55688 0.12059 3.45837 22 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 23 2.92625 3.55688 0.12059 3.45837 23 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 24 3.05809 2.57571 3.10741 0.18367 24 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 25 2.92625 3.55688 0.12059 3.45837 25 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 26 0.14597 3.34993 2.78218 3.24874 26 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 27 0.14597 3.34993 2.78218 3.24874 27 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 28 3.39812 0.13446 3.44905 2.80346 28 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 29 3.39812 0.13446 3.44905 2.80346 29 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 30 3.05809 2.57571 3.10741 0.18367 30 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 31 2.92625 3.55688 0.12059 3.45837 31 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 32 3.39812 0.13446 3.44905 2.80346 32 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 33 2.92625 3.55688 0.12059 3.45837 33 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 34 2.92625 3.55688 0.12059 3.45837 34 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 35 0.14597 3.34993 2.78218 3.24874 35 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 36 0.14597 3.34993 2.78218 3.24874 36 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 37 2.92625 3.55688 0.12059 3.45837 37 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 38 2.92625 3.55688 0.12059 3.45837 38 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 39 0.14597 3.34993 2.78218 3.24874 39 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 40 3.05809 2.57571 3.10741 0.18367 40 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 41 3.39812 0.13446 3.44905 2.80346 41 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 42 0.14597 3.34993 2.78218 3.24874 42 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 43 3.05809 2.57571 3.10741 0.18367 43 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 44 3.05809 2.57571 3.10741 0.18367 44 - - 1.38629 1.38629 1.38629 1.38629 0.03753 3.99441 3.99441 1.46634 0.26236 1.09861 0.40547 45 0.14597 3.34993 2.78218 3.24874 45 - - 1.38629 1.38629 1.38629 1.38629 0.01894 3.97582 * 1.46634 0.26236 0.00000 * //