view ITSx_db/HMMs/E.hmm @ 5:c711ca9a7f4c draft

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date Fri, 05 Jun 2015 11:10:49 -0400
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HMMER3/b [3.0 | March 2010]
NAME  3_End_Euglenozoa_58S_end_five_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 21:20:25 2012
NSEQ  5
EFFN  3.305664
CKSUM 1011588078
STATS LOCAL MSV       -8.1772  0.71930
STATS LOCAL VITERBI   -7.8656  0.71930
STATS LOCAL FORWARD   -3.6513  0.71930
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.83104  0.97779  1.32465  1.62094
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  0.00000        *
      1   3.42681  0.13096  3.47654  2.82441      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      2   3.42681  0.13096  3.47654  2.82441      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      3   3.42681  0.13096  3.47654  2.82441      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      4   3.42681  0.13096  3.47654  2.82441      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      5   2.43822  1.17704  2.50879  0.64793      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      6   3.42681  0.13096  3.47654  2.82441      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      7   2.94371  3.58221  0.11777  3.48630      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      8   2.94371  3.58221  0.11777  3.48630      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
      9   2.94371  3.58221  0.11777  3.48630      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     10   2.94371  3.58221  0.11777  3.48630     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     11   2.66304  1.70497  2.72642  0.38121     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     12   3.42681  0.13096  3.47654  2.82441     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     13   0.14262  3.37480  2.79837  3.27595     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     14   3.08310  2.59163  3.13146  0.17957     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     15   3.42681  0.13096  3.47654  2.82441     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     16   3.42681  0.13096  3.47654  2.82441     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     17   3.42681  0.13096  3.47654  2.82441     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     18   3.42681  0.13096  3.47654  2.82441     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     19   2.94371  3.58221  0.11777  3.48630     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     20   3.08310  2.59163  3.13146  0.17957     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     21   2.94371  3.58221  0.11777  3.48630     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     22   3.42681  0.13096  3.47654  2.82441     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     23   0.14262  3.37480  2.79837  3.27595     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     24   3.08310  2.59163  3.13146  0.17957     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     25   2.94371  3.58221  0.11777  3.48630     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     26   3.42681  0.13096  3.47654  2.82441     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     27   3.42681  0.13096  3.47654  2.82441     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     28   2.94371  3.58221  0.11777  3.48630     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     29   3.42681  0.13096  3.47654  2.82441     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     30   0.14262  3.37480  2.79837  3.27595     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     31   2.94371  3.58221  0.11777  3.48630     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     32   3.08310  2.59163  3.13146  0.17957     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     33   3.42681  0.13096  3.47654  2.82441     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     34   3.08310  2.59163  3.13146  0.17957     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     35   3.42681  0.13096  3.47654  2.82441     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     36   0.14262  3.37480  2.79837  3.27595     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     37   2.94371  3.58221  0.11777  3.48630     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     38   3.08310  2.59163  3.13146  0.17957     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     39   2.94371  3.58221  0.11777  3.48630     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     40   3.08310  2.59163  3.13146  0.17957     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     41   3.42681  0.13096  3.47654  2.82441     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     42   2.94371  3.58221  0.11777  3.48630     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     43   0.14262  3.37480  2.79837  3.27595     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     44   0.14262  3.37480  2.79837  3.27595     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
     45   3.42681  0.13096  3.47654  2.82441     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01867  3.99003        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Euglenozoa_58S_end_four_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 21:20:17 2012
NSEQ  9
EFFN  3.388184
CKSUM 4129927598
STATS LOCAL MSV       -7.5680  0.71933
STATS LOCAL VITERBI   -7.9086  0.71933
STATS LOCAL FORWARD   -4.1297  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.73272  1.05373  1.47466  1.40362
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  0.00000        *
      1   3.45700  0.12739  3.50544  2.84636      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
      2   3.45700  0.12739  3.50544  2.84636      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
      3   3.10960  2.60848  3.15695  0.17533      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
      4   3.10960  2.60848  3.15695  0.17533      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
      5   2.51380  0.59068  2.58551  1.23879      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
      6   3.10960  2.60848  3.15695  0.17533      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
      7   2.58534  2.38556  0.26060  2.78052      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
      8   2.96194  3.60876  0.11489  3.51562      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
      9   2.96194  3.60876  0.11489  3.51562      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     10   2.96194  3.60876  0.11489  3.51562     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     11   3.10960  2.60848  3.15695  0.17533     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     12   3.45700  0.12739  3.50544  2.84636     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     13   0.13919  3.40101  2.81538  3.30464     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     14   3.10960  2.60848  3.15695  0.17533     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     15   3.45700  0.12739  3.50544  2.84636     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     16   3.45700  0.12739  3.50544  2.84636     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     17   3.45700  0.12739  3.50544  2.84636     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     18   3.45700  0.12739  3.50544  2.84636     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     19   2.96194  3.60876  0.11489  3.51562     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     20   3.10960  2.60848  3.15695  0.17533     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     21   2.96194  3.60876  0.11489  3.51562     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     22   3.45700  0.12739  3.50544  2.84636     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     23   0.13919  3.40101  2.81538  3.30464     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     24   3.10960  2.60848  3.15695  0.17533     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     25   2.96194  3.60876  0.11489  3.51562     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     26   3.45700  0.12739  3.50544  2.84636     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     27   3.45700  0.12739  3.50544  2.84636     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     28   0.13919  3.40101  2.81538  3.30464     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     29   3.45700  0.12739  3.50544  2.84636     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     30   0.13919  3.40101  2.81538  3.30464     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     31   3.10960  2.60848  3.15695  0.17533     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     32   3.45700  0.12739  3.50544  2.84636     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     33   3.45700  0.12739  3.50544  2.84636     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     34   3.10960  2.60848  3.15695  0.17533     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     35   3.45700  0.12739  3.50544  2.84636     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     36   0.13919  3.40101  2.81538  3.30464     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     37   2.96194  3.60876  0.11489  3.51562     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     38   3.10960  2.60848  3.15695  0.17533     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     39   2.96194  3.60876  0.11489  3.51562     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     40   3.10960  2.60848  3.15695  0.17533     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     41   3.45700  0.12739  3.50544  2.84636     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     42   2.96194  3.60876  0.11489  3.51562     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     43   0.13919  3.40101  2.81538  3.30464     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     44   0.13919  3.40101  2.81538  3.30464     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     45   3.45700  0.12739  3.50544  2.84636     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01839  4.00518        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Euglenozoa_58S_end_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 21:19:53 2012
NSEQ  2
EFFN  2.000000
CKSUM 4096091460
STATS LOCAL MSV       -7.5109  0.72875
STATS LOCAL VITERBI   -8.2829  0.72875
STATS LOCAL FORWARD   -3.4193  0.72875
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.64469  1.08655  1.50951  1.39220
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   1.03732  1.95876  1.96551  1.00928      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.81865  0.23582  2.88868  2.35662     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   0.23862  2.84929  2.43386  2.70756     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   0.23862  2.84929  2.43386  2.70756     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.57915  2.25909  2.64442  0.28946     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Euglenozoa_58S_end_seven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 21:20:40 2012
NSEQ  2
EFFN  2.000000
CKSUM 2052136868
STATS LOCAL MSV       -7.3922  0.72832
STATS LOCAL VITERBI   -8.2890  0.72832
STATS LOCAL FORWARD   -3.4229  0.72832
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.59740  1.17878  1.51108  1.31211
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.53331  3.02441  0.20344  2.88069      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.57915  2.25909  2.64442  0.28946     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.81865  0.23582  2.88868  2.35662     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   0.23862  2.84929  2.43386  2.70756     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   0.23862  2.84929  2.43386  2.70756     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.57915  2.25909  2.64442  0.28946     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Euglenozoa_58S_end_six_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 21:20:34 2012
NSEQ  7
EFFN  3.325684
CKSUM 336432944
STATS LOCAL MSV       -8.1816  0.71932
STATS LOCAL VITERBI   -7.9070  0.71932
STATS LOCAL FORWARD   -4.0754  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.64558  1.08090  1.62591  1.30535
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  0.00000        *
      1   3.08958  2.59576  3.13770  0.17852      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
      2   3.43422  0.13008  3.48363  2.82980      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
      3   3.08958  2.59576  3.13770  0.17852      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
      4   3.43422  0.13008  3.48363  2.82980      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
      5   3.08958  2.59576  3.13770  0.17852      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
      6   3.43422  0.13008  3.48363  2.82980      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
      7   2.94820  3.58873  0.11705  3.49350      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
      8   0.14177  3.38122  2.80255  3.28298      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
      9   2.94820  3.58873  0.11705  3.49350      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     10   3.43422  0.13008  3.48363  2.82980     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     11   3.43422  0.13008  3.48363  2.82980     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     12   0.14177  3.38122  2.80255  3.28298     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     13   3.08958  2.59576  3.13770  0.17852     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     14   3.43422  0.13008  3.48363  2.82980     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     15   3.43422  0.13008  3.48363  2.82980     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     16   3.43422  0.13008  3.48363  2.82980     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     17   3.43422  0.13008  3.48363  2.82980     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     18   2.94820  3.58873  0.11705  3.49350     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     19   3.08958  2.59576  3.13770  0.17852     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     20   2.94820  3.58873  0.11705  3.49350     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     21   3.43422  0.13008  3.48363  2.82980     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     22   0.14177  3.38122  2.80255  3.28298     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     23   3.08958  2.59576  3.13770  0.17852     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     24   2.94820  3.58873  0.11705  3.49350     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     25   3.43422  0.13008  3.48363  2.82980     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     26   3.43422  0.13008  3.48363  2.82980     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     27   0.14177  3.38122  2.80255  3.28298     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     28   3.43422  0.13008  3.48363  2.82980     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     29   0.14177  3.38122  2.80255  3.28298     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     30   3.08958  2.59576  3.13770  0.17852     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     31   3.08958  2.59576  3.13770  0.17852     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     32   3.08958  2.59576  3.13770  0.17852     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     33   3.43422  0.13008  3.48363  2.82980     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     34   3.08958  2.59576  3.13770  0.17852     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     35   3.43422  0.13008  3.48363  2.82980     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     36   0.14177  3.38122  2.80255  3.28298     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     37   2.94820  3.58873  0.11705  3.49350     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     38   3.08958  2.59576  3.13770  0.17852     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     39   2.94820  3.58873  0.11705  3.49350     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     40   3.08958  2.59576  3.13770  0.17852     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     41   3.43422  0.13008  3.48363  2.82980     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     42   2.94820  3.58873  0.11705  3.49350     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     43   0.14177  3.38122  2.80255  3.28298     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     44   0.14177  3.38122  2.80255  3.28298     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
     45   2.76326  1.89083  2.82328  0.31944     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01860  3.99373        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Euglenozoa_58S_end_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 21:20:07 2012
NSEQ  10
EFFN  3.364258
CKSUM 1761663145
STATS LOCAL MSV       -8.0329  0.71931
STATS LOCAL VITERBI   -7.7753  0.71931
STATS LOCAL FORWARD   -4.1828  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.64380  1.18343  1.62478  1.19213
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  0.00000        *
      1   3.44834  0.12841  3.49715  2.84007      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
      2   3.10197  2.60364  3.14962  0.17654      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
      3   3.44834  0.12841  3.49715  2.84007      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
      4   2.85311  2.04951  2.90999  0.27567      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
      5   0.14016  3.39348  2.81050  3.29640      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
      6   3.10197  2.60364  3.14962  0.17654      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
      7   3.10197  2.60364  3.14962  0.17654      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
      8   2.95673  3.60115  0.11570  3.50722      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
      9   3.10197  2.60364  3.14962  0.17654      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     10   2.95673  3.60115  0.11570  3.50722     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     11   3.10197  2.60364  3.14962  0.17654     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     12   3.44834  0.12841  3.49715  2.84007     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     13   0.14016  3.39348  2.81050  3.29640     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     14   3.10197  2.60364  3.14962  0.17654     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     15   3.44834  0.12841  3.49715  2.84007     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     16   3.44834  0.12841  3.49715  2.84007     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     17   3.44834  0.12841  3.49715  2.84007     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     18   3.44834  0.12841  3.49715  2.84007     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     19   2.95673  3.60115  0.11570  3.50722     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     20   3.10197  2.60364  3.14962  0.17654     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     21   2.95673  3.60115  0.11570  3.50722     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     22   3.44834  0.12841  3.49715  2.84007     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     23   0.14016  3.39348  2.81050  3.29640     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     24   3.10197  2.60364  3.14962  0.17654     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     25   2.95673  3.60115  0.11570  3.50722     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     26   3.44834  0.12841  3.49715  2.84007     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     27   3.44834  0.12841  3.49715  2.84007     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     28   0.14016  3.39348  2.81050  3.29640     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     29   3.10197  2.60364  3.14962  0.17654     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     30   0.14016  3.39348  2.81050  3.29640     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     31   3.10197  2.60364  3.14962  0.17654     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     32   3.10197  2.60364  3.14962  0.17654     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     33   3.44834  0.12841  3.49715  2.84007     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     34   3.10197  2.60364  3.14962  0.17654     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     35   3.44834  0.12841  3.49715  2.84007     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     36   0.14016  3.39348  2.81050  3.29640     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     37   2.95673  3.60115  0.11570  3.50722     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     38   3.10197  2.60364  3.14962  0.17654     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     39   2.95673  3.60115  0.11570  3.50722     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     40   3.10197  2.60364  3.14962  0.17654     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     41   3.44834  0.12841  3.49715  2.84007     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     42   2.95673  3.60115  0.11570  3.50722     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     43   0.14016  3.39348  2.81050  3.29640     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     44   0.14016  3.39348  2.81050  3.29640     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     45   3.44834  0.12841  3.49715  2.84007     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01847  4.00081        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Euglenozoa_58S_end_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 21:20:00 2012
NSEQ  3
EFFN  3.000000
CKSUM 1286592291
STATS LOCAL MSV       -8.1373  0.72009
STATS LOCAL VITERBI   -7.9096  0.72009
STATS LOCAL FORWARD   -3.7767  0.72009
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.93030  1.04903  1.32920  1.42741
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   3.30705  0.14631  3.36166  2.73626      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   0.15719  3.27118  2.73043  3.16274      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.97980  2.52563  3.03204  0.19727     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   3.30705  0.14631  3.36166  2.73626     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.86982  3.47591  0.13017  3.36931     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.97980  2.52563  3.03204  0.19727     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   3.30705  0.14631  3.36166  2.73626     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Euglenozoa_58S_start_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 20:59:41 2012
NSEQ  60
EFFN  3.709717
CKSUM 2951457206
STATS LOCAL MSV       -7.0592  0.71932
STATS LOCAL VITERBI   -7.6953  0.71932
STATS LOCAL FORWARD   -4.4755  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47506  1.53206  1.31293  1.25137
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  0.00000        *
      1   2.81230  0.36257  2.87896  1.67210      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
      2   0.15880  3.31741  2.80140  2.99844      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
      3   0.12745  3.49654  2.87698  3.40944      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
      4   3.56652  0.11536  3.61013  2.92516      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
      5   3.02701  3.70437  0.10516  3.62145      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
      6   3.07464  2.34317  3.12362  0.20607      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
      7   3.02701  3.70437  0.10516  3.62145      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
      8   3.20757  2.67063  3.25111  0.16063      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
      9   3.56652  0.11536  3.61013  2.92516      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     10   2.93962  3.51998  0.13184  3.19334     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     11   3.56652  0.11536  3.61013  2.92516     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     12   3.02701  3.70437  0.10516  3.62145     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     13   0.12745  3.49654  2.87698  3.40944     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     14   3.20757  2.67063  3.25111  0.16063     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     15   3.02701  3.70437  0.10516  3.62145     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     16   3.02701  3.70437  0.10516  3.62145     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     17   0.12745  3.49654  2.87698  3.40944     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     18   3.20757  2.67063  3.25111  0.16063     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     19   3.02701  3.70437  0.10516  3.62145     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     20   0.14615  3.42302  2.69379  3.33166     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     21   3.56652  0.11536  3.61013  2.92516     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     22   3.20757  2.67063  3.25111  0.16063     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     23   3.20757  2.67063  3.25111  0.16063     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     24   3.02701  3.70437  0.10516  3.62145     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     25   3.02701  3.70437  0.10516  3.62145     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     26   3.56652  0.11536  3.61013  2.92516     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     27   3.20757  2.67063  3.25111  0.16063     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     28   3.20757  2.67063  3.25111  0.16063     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     29   3.56652  0.11536  3.61013  2.92516     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     30   3.56652  0.11536  3.61013  2.92516     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     31   2.93690  2.05163  2.99156  0.26366     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     32   0.21966  3.18213  2.21242  3.07315     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     33   2.65599  2.43617  2.15637  0.31947     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     34   3.20757  2.67063  3.25111  0.16063     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     35   3.20757  2.67063  3.25111  0.16063     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     36   3.56652  0.11536  3.61013  2.92516     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     37   2.90263  3.44668  0.14401  3.04937     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     38   3.05824  2.30650  3.10791  0.21230     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     39   3.20757  2.67063  3.25111  0.16063     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     40   3.02701  3.70437  0.10516  3.62145     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     41   0.12745  3.49654  2.87698  3.40944     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     42   0.12745  3.49654  2.87698  3.40944     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     43   2.56281  2.78185  0.23222  2.68510     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     44   0.12745  3.49654  2.87698  3.40944     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
     45   0.12745  3.49654  2.87698  3.40944     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01736  4.06212        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Euglenozoa_58S_start_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 21:01:50 2012
NSEQ  4
EFFN  3.214844
CKSUM 3244284289
STATS LOCAL MSV       -8.0494  0.71931
STATS LOCAL VITERBI   -7.8071  0.71931
STATS LOCAL FORWARD   -4.2819  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33872  1.32622  1.38203  1.50836
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  0.00000        *
      1   3.39256  0.13515  3.44371  2.79938      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      2   0.14663  3.34511  2.77903  3.24347      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      3   0.14663  3.34511  2.77903  3.24347      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      4   3.39256  0.13515  3.44371  2.79938      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      5   3.05326  2.57263  3.10276  0.18448      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      6   3.39256  0.13515  3.44371  2.79938      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      7   0.14663  3.34511  2.77903  3.24347      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      8   3.05326  2.57263  3.10276  0.18448      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      9   0.14663  3.34511  2.77903  3.24347      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     10   0.14663  3.34511  2.77903  3.24347     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     11   3.39256  0.13515  3.44371  2.79938     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     12   0.14663  3.34511  2.77903  3.24347     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     13   2.92285  3.55196  0.12115  3.45295     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     14   3.05326  2.57263  3.10276  0.18448     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     15   2.92285  3.55196  0.12115  3.45295     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     16   2.92285  3.55196  0.12115  3.45295     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     17   0.14663  3.34511  2.77903  3.24347     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     18   3.05326  2.57263  3.10276  0.18448     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     19   2.92285  3.55196  0.12115  3.45295     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     20   3.05326  2.57263  3.10276  0.18448     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     21   3.39256  0.13515  3.44371  2.79938     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     22   3.05326  2.57263  3.10276  0.18448     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     23   3.05326  2.57263  3.10276  0.18448     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     24   2.92285  3.55196  0.12115  3.45295     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     25   2.92285  3.55196  0.12115  3.45295     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     26   3.39256  0.13515  3.44371  2.79938     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     27   3.05326  2.57263  3.10276  0.18448     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     28   3.39256  0.13515  3.44371  2.79938     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     29   3.39256  0.13515  3.44371  2.79938     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     30   3.39256  0.13515  3.44371  2.79938     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     31   3.39256  0.13515  3.44371  2.79938     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     32   0.14663  3.34511  2.77903  3.24347     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     33   2.92285  3.55196  0.12115  3.45295     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     34   3.05326  2.57263  3.10276  0.18448     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     35   3.39256  0.13515  3.44371  2.79938     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     36   2.92285  3.55196  0.12115  3.45295     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     37   0.14663  3.34511  2.77903  3.24347     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     38   3.05326  2.57263  3.10276  0.18448     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     39   2.92285  3.55196  0.12115  3.45295     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     40   0.14663  3.34511  2.77903  3.24347     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     41   0.14663  3.34511  2.77903  3.24347     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     42   2.92285  3.55196  0.12115  3.45295     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     43   2.92285  3.55196  0.12115  3.45295     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     44   0.14663  3.34511  2.77903  3.24347     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     45   3.39256  0.13515  3.44371  2.79938     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01899  3.97309        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Euglenozoa_4_LSU_start_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 21:57:31 2012
NSEQ  3
EFFN  3.000000
CKSUM 1715626233
STATS LOCAL MSV       -8.0936  0.72023
STATS LOCAL VITERBI   -7.5457  0.72023
STATS LOCAL FORWARD   -3.8158  0.72023
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28061  1.32941  1.44863  1.50234
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   0.15719  3.27118  2.73043  3.16274      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.86982  3.47591  0.13017  3.36931     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   0.15719  3.27118  2.73043  3.16274     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   0.15719  3.27118  2.73043  3.16274     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   3.30705  0.14631  3.36166  2.73626     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.86982  3.47591  0.13017  3.36931     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.97980  2.52563  3.03204  0.19727     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   0.15719  3.27118  2.73043  3.16274     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   0.15719  3.27118  2.73043  3.16274     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.86982  3.47591  0.13017  3.36931     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Euglenozoa_4_LSU_start_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 21:57:39 2012
NSEQ  5
EFFN  3.129883
CKSUM 3692703187
STATS LOCAL MSV       -8.1014  0.71932
STATS LOCAL VITERBI   -7.6315  0.71932
STATS LOCAL FORWARD   -3.8081  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28086  1.16099  1.38291  1.84405
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  0.00000        *
      1   3.35951  0.13934  3.41202  2.77509      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
      2   0.15061  3.31651  2.76031  3.21221      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
      3   3.35951  0.13934  3.41202  2.77509      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
      4   0.15061  3.31651  2.76031  3.21221      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
      5   2.90252  3.52266  0.12454  3.42069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
      6   0.15061  3.31651  2.76031  3.21221      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
      7   3.35951  0.13934  3.41202  2.77509      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
      8   3.35951  0.13934  3.41202  2.77509      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
      9   3.02470  2.55440  3.07528  0.18933      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     10   2.90252  3.52266  0.12454  3.42069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     11   0.15061  3.31651  2.76031  3.21221     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     12   2.90252  3.52266  0.12454  3.42069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     13   3.35951  0.13934  3.41202  2.77509     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     14   2.90252  3.52266  0.12454  3.42069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     15   3.35951  0.13934  3.41202  2.77509     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     16   2.90252  3.52266  0.12454  3.42069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     17   2.90252  3.52266  0.12454  3.42069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     18   3.35951  0.13934  3.41202  2.77509     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     19   0.15061  3.31651  2.76031  3.21221     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     20   2.90252  3.52266  0.12454  3.42069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     21   2.90252  3.52266  0.12454  3.42069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     22   0.15061  3.31651  2.76031  3.21221     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     23   3.35951  0.13934  3.41202  2.77509     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     24   3.02470  2.55440  3.07528  0.18933     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     25   0.15061  3.31651  2.76031  3.21221     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     26   3.35951  0.13934  3.41202  2.77509     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     27   3.35951  0.13934  3.41202  2.77509     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     28   3.35951  0.13934  3.41202  2.77509     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     29   2.90252  3.52266  0.12454  3.42069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     30   3.35951  0.13934  3.41202  2.77509     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     31   3.35951  0.13934  3.41202  2.77509     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     32   2.90252  3.52266  0.12454  3.42069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     33   0.15061  3.31651  2.76031  3.21221     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     34   0.15061  3.31651  2.76031  3.21221     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     35   3.35951  0.13934  3.41202  2.77509     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     36   3.02470  2.55440  3.07528  0.18933     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     37   3.02470  2.55440  3.07528  0.18933     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     38   0.15061  3.31651  2.76031  3.21221     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     39   0.15061  3.31651  2.76031  3.21221     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     40   2.90252  3.52266  0.12454  3.42069     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     41   3.35951  0.13934  3.41202  2.77509     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     42   0.15061  3.31651  2.76031  3.21221     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     43   3.02470  2.55440  3.07528  0.18933     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     44   0.15061  3.31651  2.76031  3.21221     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     45   3.02470  2.55440  3.07528  0.18933     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01931  3.95697        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Euglenozoa_4_LSU_start_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 21:57:46 2012
NSEQ  2
EFFN  2.000000
CKSUM 2807236311
STATS LOCAL MSV       -7.3996  0.72794
STATS LOCAL VITERBI   -8.2623  0.72794
STATS LOCAL FORWARD   -3.4447  0.72794
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.23771  1.40555  1.43188  1.48784
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   0.23862  2.84929  2.43386  2.70756      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   0.23862  2.84929  2.43386  2.70756     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.53331  3.02441  0.20344  2.88069     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Euglenozoa_1_SSU_end_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 20:54:59 2012
NSEQ  19
EFFN  3.400146
CKSUM 2809811454
STATS LOCAL MSV       -7.3985  0.71931
STATS LOCAL VITERBI   -7.6109  0.71931
STATS LOCAL FORWARD   -4.3416  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.31740  1.61716  1.24218  1.40668
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  0.00000        *
      1   0.13870  3.40475  2.81780  3.30874      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
      2   2.96453  3.61254  0.11448  3.51980      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
      3   3.11339  2.61089  3.16060  0.17473      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
      4   3.46130  0.12689  3.50955  2.84948      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
      5   2.96453  3.61254  0.11448  3.51980      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
      6   3.11339  2.61089  3.16060  0.17473      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
      7   0.13870  3.40475  2.81780  3.30874      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
      8   0.13870  3.40475  2.81780  3.30874      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
      9   3.46130  0.12689  3.50955  2.84948      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     10   0.13870  3.40475  2.81780  3.30874     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     11   0.13870  3.40475  2.81780  3.30874     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     12   2.96453  3.61254  0.11448  3.51980     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     13   2.96453  3.61254  0.11448  3.51980     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     14   3.11339  2.61089  3.16060  0.17473     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     15   0.13870  3.40475  2.81780  3.30874     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     16   2.96453  3.61254  0.11448  3.51980     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     17   3.46130  0.12689  3.50955  2.84948     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     18   3.11339  2.61089  3.16060  0.17473     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     19   2.96453  3.61254  0.11448  3.51980     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     20   3.11339  2.61089  3.16060  0.17473     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     21   0.13870  3.40475  2.81780  3.30874     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     22   2.96453  3.61254  0.11448  3.51980     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     23   2.96453  3.61254  0.11448  3.51980     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     24   3.11339  2.61089  3.16060  0.17473     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     25   2.96453  3.61254  0.11448  3.51980     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     26   0.13870  3.40475  2.81780  3.30874     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     27   0.13870  3.40475  2.81780  3.30874     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     28   3.46130  0.12689  3.50955  2.84948     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     29   3.46130  0.12689  3.50955  2.84948     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     30   2.42061  2.46773  2.82739  0.26502     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     31   2.96453  3.61254  0.11448  3.51980     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     32   3.46130  0.12689  3.50955  2.84948     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     33   0.13870  3.40475  2.81780  3.30874     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     34   2.96453  3.61254  0.11448  3.51980     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     35   3.46130  0.12689  3.50955  2.84948     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     36   3.11339  2.61089  3.16060  0.17473     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     37   2.96453  3.61254  0.11448  3.51980     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     38   2.96453  3.61254  0.11448  3.51980     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     39   0.13870  3.40475  2.81780  3.30874     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     40   3.11339  2.61089  3.16060  0.17473     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     41   3.46130  0.12689  3.50955  2.84948     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     42   0.13870  3.40475  2.81780  3.30874     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     43   2.95906  2.25050  3.01199  0.23119     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     44   3.11339  2.61089  3.16060  0.17473     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
     45   1.62709  2.24353  2.39119  0.50105     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01835  4.00736        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Euglenozoa_1_SSU_end_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 20:55:06 2012
NSEQ  3
EFFN  3.000000
CKSUM 4020611059
STATS LOCAL MSV       -8.1570  0.72021
STATS LOCAL VITERBI   -7.7566  0.72021
STATS LOCAL FORWARD   -4.0990  0.72021
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33642  1.53820  1.24991  1.44428
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   0.15719  3.27118  2.73043  3.16274      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   0.15719  3.27118  2.73043  3.16274      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   0.15719  3.27118  2.73043  3.16274      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   0.15719  3.27118  2.73043  3.16274      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.97980  2.52563  3.03204  0.19727     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.97980  2.52563  3.03204  0.19727     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   0.15719  3.27118  2.73043  3.16274     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.97980  2.52563  3.03204  0.19727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   0.15719  3.27118  2.73043  3.16274     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   3.30705  0.14631  3.36166  2.73626     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.97980  2.52563  3.03204  0.19727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.86982  3.47591  0.13017  3.36931     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   0.15719  3.27118  2.73043  3.16274     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.86982  3.47591  0.13017  3.36931     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.86982  3.47591  0.13017  3.36931     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//