view ITSx_db/HMMs/L.hmm @ 5:c711ca9a7f4c draft

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date Fri, 05 Jun 2015 11:10:49 -0400
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HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_foura_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:48:18 2012
NSEQ  4
EFFN  3.089844
CKSUM 3677159024
STATS LOCAL MSV       -8.1113  0.71933
STATS LOCAL VITERBI   -7.8119  0.71933
STATS LOCAL FORWARD   -3.9220  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72586  1.10743  1.14821  1.74657
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  0.00000        *
      1   3.34359  0.14142  3.39674  2.76335      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
      2   2.89265  3.50850  0.12621  3.40512      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
      3   3.34359  0.14142  3.39674  2.76335      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
      4   3.34359  0.14142  3.39674  2.76335      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
      5   3.34359  0.14142  3.39674  2.76335      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
      6   2.89265  3.50850  0.12621  3.40512      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
      7   0.15258  3.30274  2.75126  3.19718      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
      8   2.89265  3.50850  0.12621  3.40512      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
      9   2.89265  3.50850  0.12621  3.40512      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     10   3.01102  2.54565  3.06211  0.19171     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     11   3.34359  0.14142  3.39674  2.76335     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     12   3.01102  2.54565  3.06211  0.19171     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     13   3.34359  0.14142  3.39674  2.76335     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     14   2.89265  3.50850  0.12621  3.40512     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     15   3.01102  2.54565  3.06211  0.19171     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     16   0.15258  3.30274  2.75126  3.19718     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     17   3.34359  0.14142  3.39674  2.76335     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     18   3.34359  0.14142  3.39674  2.76335     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     19   2.89265  3.50850  0.12621  3.40512     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     20   0.15258  3.30274  2.75126  3.19718     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     21   2.89265  3.50850  0.12621  3.40512     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     22   2.89265  3.50850  0.12621  3.40512     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     23   2.89265  3.50850  0.12621  3.40512     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     24   3.34359  0.14142  3.39674  2.76335     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     25   0.15258  3.30274  2.75126  3.19718     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     26   3.34359  0.14142  3.39674  2.76335     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     27   2.89265  3.50850  0.12621  3.40512     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     28   3.01102  2.54565  3.06211  0.19171     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     29   3.34359  0.14142  3.39674  2.76335     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     30   3.01102  2.54565  3.06211  0.19171     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     31   2.89265  3.50850  0.12621  3.40512     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     32   3.34359  0.14142  3.39674  2.76335     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     33   3.34359  0.14142  3.39674  2.76335     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     34   3.01102  2.54565  3.06211  0.19171     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     35   2.89265  3.50850  0.12621  3.40512     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     36   0.15258  3.30274  2.75126  3.19718     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     37   2.89265  3.50850  0.12621  3.40512     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     38   3.34359  0.14142  3.39674  2.76335     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     39   2.89265  3.50850  0.12621  3.40512     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     40   3.01102  2.54565  3.06211  0.19171     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     41   3.34359  0.14142  3.39674  2.76335     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     42   0.15258  3.30274  2.75126  3.19718     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     43   3.34359  0.14142  3.39674  2.76335     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     44   0.15258  3.30274  2.75126  3.19718     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     45   2.89265  3.50850  0.12621  3.40512     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01946  3.94929        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_fourb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:48:24 2012
NSEQ  2
EFFN  2.000000
CKSUM 131491290
STATS LOCAL MSV       -7.4968  0.72757
STATS LOCAL VITERBI   -8.3707  0.72757
STATS LOCAL FORWARD   -3.7471  0.72757
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.66684  1.23957  1.21839  1.48748
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.53331  3.02441  0.20344  2.88069      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.57915  2.25909  2.64442  0.28946     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.53331  3.02441  0.20344  2.88069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_fourc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:48:31 2012
NSEQ  3
EFFN  3.000000
CKSUM 1848225497
STATS LOCAL MSV       -8.1659  0.71999
STATS LOCAL VITERBI   -7.8126  0.71999
STATS LOCAL FORWARD   -4.1112  0.71999
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72006  1.20903  1.20251  1.50499
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.86982  3.47591  0.13017  3.36931      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   0.15719  3.27118  2.73043  3.16274      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.97980  2.52563  3.03204  0.19727     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.86982  3.47591  0.13017  3.36931     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   3.30705  0.14631  3.36166  2.73626     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.86982  3.47591  0.13017  3.36931     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:33:59 2012
NSEQ  2
EFFN  2.000000
CKSUM 2649339398
STATS LOCAL MSV       -7.6624  0.72818
STATS LOCAL VITERBI   -8.3675  0.72818
STATS LOCAL FORWARD   -3.1512  0.72818
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82330  1.26894  1.16757  1.40139
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.15554  1.00938  2.23102  0.88601     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.81865  0.23582  2.88868  2.35662     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.81865  0.23582  2.88868  2.35662     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:46:07 2012
NSEQ  9
EFFN  3.062988
CKSUM 1860575478
STATS LOCAL MSV       -8.2074  0.71931
STATS LOCAL VITERBI   -7.8383  0.71931
STATS LOCAL FORWARD   -3.6122  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82320  1.06212  1.09674  1.84004
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  0.00000        *
      1   2.88593  3.49888  0.12737  3.39454      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
      2   3.33278  0.14284  3.38637  2.75536      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
      3   2.88593  3.49888  0.12737  3.39454      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
      4   3.33278  0.14284  3.38637  2.75536      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
      5   3.33278  0.14284  3.38637  2.75536      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
      6   3.33278  0.14284  3.38637  2.75536      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
      7   2.88593  3.49888  0.12737  3.39454      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
      8   0.15393  3.29341  2.74511  3.18699      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
      9   2.88593  3.49888  0.12737  3.39454      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     10   2.88593  3.49888  0.12737  3.39454     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     11   3.00176  2.53972  3.05320  0.19334     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     12   3.00176  2.53972  3.05320  0.19334     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     13   3.33278  0.14284  3.38637  2.75536     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     14   0.15393  3.29341  2.74511  3.18699     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     15   3.33278  0.14284  3.38637  2.75536     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     16   2.88593  3.49888  0.12737  3.39454     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     17   3.33278  0.14284  3.38637  2.75536     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     18   3.33278  0.14284  3.38637  2.75536     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     19   2.88593  3.49888  0.12737  3.39454     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     20   0.15393  3.29341  2.74511  3.18699     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     21   2.88593  3.49888  0.12737  3.39454     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     22   2.88593  3.49888  0.12737  3.39454     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     23   2.88593  3.49888  0.12737  3.39454     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     24   3.33278  0.14284  3.38637  2.75536     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     25   0.15393  3.29341  2.74511  3.18699     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     26   3.33278  0.14284  3.38637  2.75536     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     27   2.88593  3.49888  0.12737  3.39454     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     28   3.00176  2.53972  3.05320  0.19334     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     29   3.33278  0.14284  3.38637  2.75536     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     30   3.00176  2.53972  3.05320  0.19334     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     31   2.88593  3.49888  0.12737  3.39454     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     32   3.33278  0.14284  3.38637  2.75536     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     33   3.33278  0.14284  3.38637  2.75536     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     34   3.00176  2.53972  3.05320  0.19334     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     35   2.88593  3.49888  0.12737  3.39454     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     36   0.15393  3.29341  2.74511  3.18699     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     37   2.88593  3.49888  0.12737  3.39454     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     38   3.33278  0.14284  3.38637  2.75536     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     39   2.88593  3.49888  0.12737  3.39454     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     40   3.00176  2.53972  3.05320  0.19334     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     41   3.33278  0.14284  3.38637  2.75536     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     42   0.15393  3.29341  2.74511  3.18699     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     43   3.33278  0.14284  3.38637  2.75536     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     44   3.33278  0.14284  3.38637  2.75536     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
     45   2.88593  3.49888  0.12737  3.39454     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01956  3.94410        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twoa_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:34:25 2012
NSEQ  63
EFFN  3.541443
CKSUM 483320876
STATS LOCAL MSV       -7.4302  0.71932
STATS LOCAL VITERBI   -7.8320  0.71932
STATS LOCAL FORWARD   -3.9705  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.03893  1.09040  1.11844  1.57522
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  0.00000        *
      1   3.15732  2.63877  3.20283  0.16799      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
      2   2.99408  3.65584  0.10998  3.56768      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
      3   3.31573  0.16407  3.36836  2.51866      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
      4   2.99408  3.65584  0.10998  3.56768      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
      5   3.51077  0.12132  3.55687  2.88519      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
      6   3.51077  0.12132  3.55687  2.88519      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
      7   3.51077  0.12132  3.55687  2.88519      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
      8   2.64517  3.49052  0.14516  3.39211      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
      9   0.13329  3.44781  2.84562  3.35595      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     10   2.99408  3.65584  0.10998  3.56768     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     11   2.99408  3.65584  0.10998  3.56768     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     12   3.51077  0.12132  3.55687  2.88519     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     13   3.15732  2.63877  3.20283  0.16799     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     14   3.36077  0.15337  3.41187  2.59697     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     15   2.99408  3.65584  0.10998  3.56768     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     16   3.15732  2.63877  3.20283  0.16799     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     17   3.51077  0.12132  3.55687  2.88519     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     18   2.59074  1.44894  2.65716  0.47793     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     19   2.57352  3.23287  0.18842  2.88198     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     20   0.13329  3.44781  2.84562  3.35595     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     21   2.99408  3.65584  0.10998  3.56768     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     22   2.99408  3.65584  0.10998  3.56768     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     23   2.99408  3.65584  0.10998  3.56768     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     24   3.51077  0.12132  3.55687  2.88519     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     25   0.13329  3.44781  2.84562  3.35595     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     26   3.15732  2.63877  3.20283  0.16799     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     27   2.90064  3.22314  0.13898  3.35416     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     28   3.34425  0.15723  3.39591  2.56791     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     29   3.51077  0.12132  3.55687  2.88519     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     30   3.15732  2.63877  3.20283  0.16799     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     31   2.99408  3.65584  0.10998  3.56768     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     32   3.51077  0.12132  3.55687  2.88519     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     33   3.51077  0.12132  3.55687  2.88519     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     34   3.15732  2.63877  3.20283  0.16799     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     35   2.99408  3.65584  0.10998  3.56768     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     36   0.13329  3.44781  2.84562  3.35595     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     37   2.99408  3.65584  0.10998  3.56768     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     38   3.51077  0.12132  3.55687  2.88519     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     39   2.99408  3.65584  0.10998  3.56768     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     40   3.15732  2.63877  3.20283  0.16799     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     41   3.51077  0.12132  3.55687  2.88519     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     42   3.09972  0.15335  3.35512  2.77733     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     43   1.60728  2.31659  0.62412  1.80045     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     44   3.10946  0.22201  3.16858  2.18564     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05030  4.05030  1.46634  0.26236  1.09861  0.40547
     45   3.08572  2.45946  3.13390  0.19204     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01788  4.03272        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twob_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:34:51 2012
NSEQ  69
EFFN  3.407043
CKSUM 3150839531
STATS LOCAL MSV       -7.5085  0.71932
STATS LOCAL VITERBI   -7.8461  0.71932
STATS LOCAL FORWARD   -3.6364  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.04551  1.00425  1.10045  1.76232
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  0.00000        *
      1   2.96602  3.61471  0.11425  3.52219      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
      2   3.46377  0.12661  3.51192  2.85127      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
      3   2.96602  3.61471  0.11425  3.52219      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
      4   3.46377  0.12661  3.51192  2.85127      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
      5   3.46377  0.12661  3.51192  2.85127      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
      6   3.46377  0.12661  3.51192  2.85127      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
      7   2.96602  3.61471  0.11425  3.52219      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
      8   0.13843  3.40690  2.81919  3.31109      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
      9   2.96602  3.61471  0.11425  3.52219      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     10   2.96602  3.61471  0.11425  3.52219     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     11   3.46377  0.12661  3.51192  2.85127     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     12   3.11557  2.61228  3.16269  0.17439     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     13   3.46377  0.12661  3.51192  2.85127     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     14   2.18816  3.18460  0.22329  3.06608     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     15   3.11557  2.61228  3.16269  0.17439     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     16   2.71675  0.39482  2.78521  1.61749     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     17   3.46377  0.12661  3.51192  2.85127     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     18   3.46377  0.12661  3.51192  2.85127     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     19   2.59926  3.43451  0.15351  3.33160     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     20   0.13843  3.40690  2.81919  3.31109     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     21   2.96602  3.61471  0.11425  3.52219     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     22   2.96602  3.61471  0.11425  3.52219     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     23   2.96602  3.61471  0.11425  3.52219     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     24   3.46377  0.12661  3.51192  2.85127     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     25   0.13843  3.40690  2.81919  3.31109     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     26   3.11557  2.61228  3.16269  0.17439     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     27   2.96602  3.61471  0.11425  3.52219     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     28   3.46377  0.12661  3.51192  2.85127     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     29   3.46377  0.12661  3.51192  2.85127     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     30   2.59381  1.51853  2.65973  0.45214     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     31   2.96602  3.61471  0.11425  3.52219     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     32   3.20944  0.18626  3.26557  2.39265     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     33   3.46377  0.12661  3.51192  2.85127     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     34   3.11557  2.61228  3.16269  0.17439     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     35   2.96602  3.61471  0.11425  3.52219     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     36   0.13843  3.40690  2.81919  3.31109     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     37   2.96602  3.61471  0.11425  3.52219     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     38   3.46377  0.12661  3.51192  2.85127     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     39   2.96602  3.61471  0.11425  3.52219     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     40   3.11557  2.61228  3.16269  0.17439     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     41   3.46377  0.12661  3.51192  2.85127     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     42   3.46377  0.12661  3.51192  2.85127     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     43   2.43900  3.34200  0.17680  3.23306     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     44   3.31928  0.15831  3.37192  2.57812     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
     45   2.80292  1.92973  2.86176  0.30515     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01833  4.00861        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twoc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:34:58 2012
NSEQ  11
EFFN  3.558350
CKSUM 944707035
STATS LOCAL MSV       -7.4441  0.71932
STATS LOCAL VITERBI   -7.7493  0.71932
STATS LOCAL FORWARD   -3.8456  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.93151  1.08511  1.17869  1.56292
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  0.00000        *
      1   2.99749  3.66086  0.10947  3.57324      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
      2   3.51652  0.12069  3.56237  2.88933      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
      3   2.99749  3.66086  0.10947  3.57324      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
      4   3.51652  0.12069  3.56237  2.88933      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
      5   3.51652  0.12069  3.56237  2.88933      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
      6   3.51652  0.12069  3.56237  2.88933      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
      7   2.99749  3.66086  0.10947  3.57324      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
      8   0.13268  3.45283  2.84886  3.36146      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
      9   2.99749  3.66086  0.10947  3.57324      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     10   2.99749  3.66086  0.10947  3.57324     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     11   3.51652  0.12069  3.56237  2.88933     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     12   3.16247  2.64204  3.20777  0.16722     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     13   3.16247  2.64204  3.20777  0.16722     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     14   2.99749  3.66086  0.10947  3.57324     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     15   3.16247  2.64204  3.20777  0.16722     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     16   2.85970  0.32413  2.92525  1.79634     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     17   3.51652  0.12069  3.56237  2.88933     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     18   3.51652  0.12069  3.56237  2.88933     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     19   0.13268  3.45283  2.84886  3.36146     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     20   0.13268  3.45283  2.84886  3.36146     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     21   2.99749  3.66086  0.10947  3.57324     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     22   2.99749  3.66086  0.10947  3.57324     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     23   2.99749  3.66086  0.10947  3.57324     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     24   3.51652  0.12069  3.56237  2.88933     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     25   0.13268  3.45283  2.84886  3.36146     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     26   3.16247  2.64204  3.20777  0.16722     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     27   2.99749  3.66086  0.10947  3.57324     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     28   2.45623  1.03792  2.52724  0.73361     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     29   3.51652  0.12069  3.56237  2.88933     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     30   3.16247  2.64204  3.20777  0.16722     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     31   2.99749  3.66086  0.10947  3.57324     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     32   3.51652  0.12069  3.56237  2.88933     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     33   3.51652  0.12069  3.56237  2.88933     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     34   3.16247  2.64204  3.20777  0.16722     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     35   2.99749  3.66086  0.10947  3.57324     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     36   0.13268  3.45283  2.84886  3.36146     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     37   2.99749  3.66086  0.10947  3.57324     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     38   3.51652  0.12069  3.56237  2.88933     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     39   2.99749  3.66086  0.10947  3.57324     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     40   3.16247  2.64204  3.20777  0.16722     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     41   3.51652  0.12069  3.56237  2.88933     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     42   3.51652  0.12069  3.56237  2.88933     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     43   2.01505  1.58261  1.26724  0.96853     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     44   2.86287  0.32252  2.92835  1.80127     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
     45   3.16247  2.64204  3.20777  0.16722     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01783  4.03572        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twod_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:35:06 2012
NSEQ  14
EFFN  3.072754
CKSUM 2872875780
STATS LOCAL MSV       -8.2157  0.71932
STATS LOCAL VITERBI   -7.9043  0.71932
STATS LOCAL FORWARD   -3.5847  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.05213  1.01793  1.04891  1.83335
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  0.00000        *
      1   2.88838  3.50239  0.12695  3.39840      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
      2   3.33672  0.14232  3.39016  2.75827      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
      3   2.88838  3.50239  0.12695  3.39840      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
      4   3.33672  0.14232  3.39016  2.75827      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
      5   3.33672  0.14232  3.39016  2.75827      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
      6   3.33672  0.14232  3.39016  2.75827      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
      7   2.88838  3.50239  0.12695  3.39840      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
      8   0.15343  3.29681  2.74736  3.19071      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
      9   2.88838  3.50239  0.12695  3.39840      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     10   2.88838  3.50239  0.12695  3.39840     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     11   3.33672  0.14232  3.39016  2.75827     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     12   3.00514  2.54188  3.05644  0.19274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     13   3.33672  0.14232  3.39016  2.75827     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     14   2.88838  3.50239  0.12695  3.39840     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     15   3.00514  2.54188  3.05644  0.19274     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     16   3.33672  0.14232  3.39016  2.75827     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     17   3.33672  0.14232  3.39016  2.75827     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     18   3.33672  0.14232  3.39016  2.75827     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     19   2.88838  3.50239  0.12695  3.39840     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     20   0.15343  3.29681  2.74736  3.19071     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     21   2.88838  3.50239  0.12695  3.39840     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     22   2.88838  3.50239  0.12695  3.39840     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     23   2.88838  3.50239  0.12695  3.39840     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     24   3.33672  0.14232  3.39016  2.75827     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     25   0.15343  3.29681  2.74736  3.19071     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     26   3.00514  2.54188  3.05644  0.19274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     27   2.88838  3.50239  0.12695  3.39840     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     28   3.33672  0.14232  3.39016  2.75827     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     29   3.33672  0.14232  3.39016  2.75827     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     30   3.00514  2.54188  3.05644  0.19274     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     31   2.88838  3.50239  0.12695  3.39840     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     32   3.33672  0.14232  3.39016  2.75827     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     33   3.33672  0.14232  3.39016  2.75827     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     34   3.00514  2.54188  3.05644  0.19274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     35   2.88838  3.50239  0.12695  3.39840     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     36   0.15343  3.29681  2.74736  3.19071     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     37   2.88838  3.50239  0.12695  3.39840     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     38   3.33672  0.14232  3.39016  2.75827     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     39   2.88838  3.50239  0.12695  3.39840     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     40   3.00514  2.54188  3.05644  0.19274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     41   3.33672  0.14232  3.39016  2.75827     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     42   3.33672  0.14232  3.39016  2.75827     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     43   2.88838  3.50239  0.12695  3.39840     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     44   2.88838  3.50239  0.12695  3.39840     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     45   3.04408  0.22016  3.10514  2.25233     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01952  3.94599        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twoe_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:35:14 2012
NSEQ  4
EFFN  3.160156
CKSUM 1816074381
STATS LOCAL MSV       -8.2845  0.71931
STATS LOCAL VITERBI   -7.7890  0.71931
STATS LOCAL FORWARD   -4.1716  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72354  1.26655  1.14343  1.50941
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  0.00000        *
      1   2.90985  3.53322  0.12331  3.43230      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
      2   3.37140  0.13782  3.42342  2.78385      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
      3   2.90985  3.53322  0.12331  3.43230      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
      4   3.37140  0.13782  3.42342  2.78385      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
      5   3.37140  0.13782  3.42342  2.78385      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
      6   3.37140  0.13782  3.42342  2.78385      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
      7   2.90985  3.53322  0.12331  3.43230      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
      8   0.14916  3.32679  2.76705  3.22344      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
      9   2.90985  3.53322  0.12331  3.43230      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     10   2.90985  3.53322  0.12331  3.43230     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     11   3.37140  0.13782  3.42342  2.78385     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     12   3.03495  2.56095  3.08514  0.18757     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     13   3.37140  0.13782  3.42342  2.78385     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     14   0.14916  3.32679  2.76705  3.22344     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     15   3.03495  2.56095  3.08514  0.18757     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     16   0.14916  3.32679  2.76705  3.22344     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     17   3.37140  0.13782  3.42342  2.78385     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     18   3.37140  0.13782  3.42342  2.78385     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     19   2.90985  3.53322  0.12331  3.43230     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     20   0.14916  3.32679  2.76705  3.22344     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     21   2.90985  3.53322  0.12331  3.43230     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     22   2.90985  3.53322  0.12331  3.43230     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     23   2.90985  3.53322  0.12331  3.43230     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     24   3.37140  0.13782  3.42342  2.78385     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     25   0.14916  3.32679  2.76705  3.22344     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     26   3.03495  2.56095  3.08514  0.18757     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     27   2.90985  3.53322  0.12331  3.43230     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     28   3.03495  2.56095  3.08514  0.18757     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     29   3.37140  0.13782  3.42342  2.78385     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     30   3.03495  2.56095  3.08514  0.18757     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     31   2.90985  3.53322  0.12331  3.43230     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     32   3.03495  2.56095  3.08514  0.18757     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     33   3.37140  0.13782  3.42342  2.78385     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     34   3.03495  2.56095  3.08514  0.18757     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     35   2.90985  3.53322  0.12331  3.43230     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     36   0.14916  3.32679  2.76705  3.22344     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     37   2.90985  3.53322  0.12331  3.43230     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     38   3.37140  0.13782  3.42342  2.78385     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     39   2.90985  3.53322  0.12331  3.43230     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     40   3.03495  2.56095  3.08514  0.18757     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     41   3.37140  0.13782  3.42342  2.78385     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     42   0.14916  3.32679  2.76705  3.22344     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     43   3.03495  2.56095  3.08514  0.18757     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     44   3.03495  2.56095  3.08514  0.18757     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     45   2.90985  3.53322  0.12331  3.43230     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01919  3.96275        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twof_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:35:21 2012
NSEQ  12
EFFN  3.524414
CKSUM 4252090704
STATS LOCAL MSV       -7.3373  0.71932
STATS LOCAL VITERBI   -7.6151  0.71932
STATS LOCAL FORWARD   -4.1079  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.90012  1.18904  1.09310  1.55703
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  0.00000        *
      1   2.99061  3.65075  0.11049  3.56205      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
      2   3.50494  0.12196  3.55129  2.88100      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
      3   2.99061  3.65075  0.11049  3.56205      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
      4   3.50494  0.12196  3.55129  2.88100      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
      5   3.50494  0.12196  3.55129  2.88100      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
      6   3.50494  0.12196  3.55129  2.88100      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
      7   2.99061  3.65075  0.11049  3.56205      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
      8   0.13392  3.44273  2.84235  3.35037      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
      9   2.99061  3.65075  0.11049  3.56205      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     10   2.99061  3.65075  0.11049  3.56205     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     11   3.50494  0.12196  3.55129  2.88100     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     12   3.15211  2.63547  3.19782  0.16877     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     13   3.50494  0.12196  3.55129  2.88100     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     14   2.02590  3.10448  0.25804  2.98161     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     15   3.15211  2.63547  3.19782  0.16877     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     16   0.13392  3.44273  2.84235  3.35037     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     17   3.50494  0.12196  3.55129  2.88100     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     18   3.50494  0.12196  3.55129  2.88100     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     19   2.99061  3.65075  0.11049  3.56205     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     20   0.13392  3.44273  2.84235  3.35037     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     21   2.99061  3.65075  0.11049  3.56205     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     22   2.99061  3.65075  0.11049  3.56205     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     23   2.99061  3.65075  0.11049  3.56205     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     24   3.50494  0.12196  3.55129  2.88100     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     25   0.13392  3.44273  2.84235  3.35037     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     26   3.15211  2.63547  3.19782  0.16877     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     27   2.99061  3.65075  0.11049  3.56205     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     28   2.45514  0.77885  2.52723  0.97993     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     29   3.50494  0.12196  3.55129  2.88100     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     30   3.15211  2.63547  3.19782  0.16877     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     31   2.99061  3.65075  0.11049  3.56205     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     32   3.15211  2.63547  3.19782  0.16877     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     33   3.50494  0.12196  3.55129  2.88100     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     34   3.15211  2.63547  3.19782  0.16877     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     35   2.99061  3.65075  0.11049  3.56205     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     36   0.13392  3.44273  2.84235  3.35037     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     37   2.99061  3.65075  0.11049  3.56205     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     38   3.50494  0.12196  3.55129  2.88100     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     39   2.99061  3.65075  0.11049  3.56205     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     40   3.15211  2.63547  3.19782  0.16877     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     41   3.50494  0.12196  3.55129  2.88100     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     42   1.57096  0.54164  2.38169  2.13737     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     43   2.78346  1.83757  2.84334  0.32748     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     44   3.15211  2.63547  3.19782  0.16877     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     45   2.39961  3.34563  0.18064  3.23722     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01794  4.02970        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twog_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:35:30 2012
NSEQ  49
EFFN  3.155212
CKSUM 2291896190
STATS LOCAL MSV       -8.0235  0.71933
STATS LOCAL VITERBI   -7.6669  0.71933
STATS LOCAL FORWARD   -4.0260  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82102  1.16638  1.09237  1.65429
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  0.00000        *
      1   2.90866  3.53150  0.12351  3.43041      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
      2   3.36946  0.13806  3.42157  2.78242      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
      3   2.90866  3.53150  0.12351  3.43041      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
      4   3.36946  0.13806  3.42157  2.78242      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
      5   3.36946  0.13806  3.42157  2.78242      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
      6   3.36946  0.13806  3.42157  2.78242      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
      7   2.90866  3.53150  0.12351  3.43041      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
      8   0.14940  3.32512  2.76595  3.22162      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
      9   2.90866  3.53150  0.12351  3.43041      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     10   2.90866  3.53150  0.12351  3.43041     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     11   3.36946  0.13806  3.42157  2.78242     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     12   3.03328  2.55988  3.08354  0.18786     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     13   3.36946  0.13806  3.42157  2.78242     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     14   2.90866  3.53150  0.12351  3.43041     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     15   3.03328  2.55988  3.08354  0.18786     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     16   0.14940  3.32512  2.76595  3.22162     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     17   3.36946  0.13806  3.42157  2.78242     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     18   3.36946  0.13806  3.42157  2.78242     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     19   2.90866  3.53150  0.12351  3.43041     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     20   0.14940  3.32512  2.76595  3.22162     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     21   2.90866  3.53150  0.12351  3.43041     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     22   2.90866  3.53150  0.12351  3.43041     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     23   2.90866  3.53150  0.12351  3.43041     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     24   3.36946  0.13806  3.42157  2.78242     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     25   0.14940  3.32512  2.76595  3.22162     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     26   3.03328  2.55988  3.08354  0.18786     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     27   2.90866  3.53150  0.12351  3.43041     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     28   2.85073  0.29930  2.91641  1.91913     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     29   3.36946  0.13806  3.42157  2.78242     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     30   3.03328  2.55988  3.08354  0.18786     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     31   2.90866  3.53150  0.12351  3.43041     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     32   3.03328  2.55988  3.08354  0.18786     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     33   3.36946  0.13806  3.42157  2.78242     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     34   3.03328  2.55988  3.08354  0.18786     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     35   2.90866  3.53150  0.12351  3.43041     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     36   0.14940  3.32512  2.76595  3.22162     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     37   2.90866  3.53150  0.12351  3.43041     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     38   3.36946  0.13806  3.42157  2.78242     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     39   2.90866  3.53150  0.12351  3.43041     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     40   3.03328  2.55988  3.08354  0.18786     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     41   3.36946  0.13806  3.42157  2.78242     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     42   3.36946  0.13806  3.42157  2.78242     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     43   0.14940  3.32512  2.76595  3.22162     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     44   3.03328  2.55988  3.08354  0.18786     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
     45   2.90866  3.53150  0.12351  3.43041     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01921  3.96181        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twoh_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:35:40 2012
NSEQ  8
EFFN  3.089844
CKSUM 909806235
STATS LOCAL MSV       -8.0300  0.71932
STATS LOCAL VITERBI   -7.6424  0.71932
STATS LOCAL FORWARD   -3.9465  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92796  1.15977  1.04591  1.66270
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  0.00000        *
      1   2.89265  3.50850  0.12621  3.40512      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
      2   3.34359  0.14142  3.39674  2.76335      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
      3   2.89265  3.50850  0.12621  3.40512      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
      4   3.34359  0.14142  3.39674  2.76335      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
      5   3.34359  0.14142  3.39674  2.76335      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
      6   3.34359  0.14142  3.39674  2.76335      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
      7   2.89265  3.50850  0.12621  3.40512      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
      8   0.15258  3.30274  2.75126  3.19718      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
      9   2.89265  3.50850  0.12621  3.40512      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     10   2.89265  3.50850  0.12621  3.40512     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     11   3.34359  0.14142  3.39674  2.76335     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     12   3.01102  2.54565  3.06211  0.19171     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     13   3.34359  0.14142  3.39674  2.76335     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     14   2.89265  3.50850  0.12621  3.40512     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     15   3.01102  2.54565  3.06211  0.19171     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     16   0.15258  3.30274  2.75126  3.19718     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     17   3.34359  0.14142  3.39674  2.76335     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     18   3.34359  0.14142  3.39674  2.76335     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     19   2.89265  3.50850  0.12621  3.40512     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     20   0.15258  3.30274  2.75126  3.19718     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     21   2.89265  3.50850  0.12621  3.40512     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     22   2.89265  3.50850  0.12621  3.40512     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     23   2.89265  3.50850  0.12621  3.40512     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     24   3.34359  0.14142  3.39674  2.76335     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     25   0.15258  3.30274  2.75126  3.19718     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     26   3.01102  2.54565  3.06211  0.19171     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     27   2.89265  3.50850  0.12621  3.40512     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     28   3.34359  0.14142  3.39674  2.76335     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     29   3.34359  0.14142  3.39674  2.76335     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     30   3.01102  2.54565  3.06211  0.19171     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     31   2.89265  3.50850  0.12621  3.40512     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     32   3.01102  2.54565  3.06211  0.19171     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     33   3.34359  0.14142  3.39674  2.76335     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     34   3.01102  2.54565  3.06211  0.19171     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     35   2.89265  3.50850  0.12621  3.40512     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     36   0.15258  3.30274  2.75126  3.19718     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     37   2.89265  3.50850  0.12621  3.40512     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     38   3.34359  0.14142  3.39674  2.76335     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     39   2.89265  3.50850  0.12621  3.40512     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     40   3.01102  2.54565  3.06211  0.19171     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     41   3.34359  0.14142  3.39674  2.76335     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     42   3.34359  0.14142  3.39674  2.76335     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     43   2.89265  3.50850  0.12621  3.40512     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     44   3.01102  2.54565  3.06211  0.19171     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
     45   2.89265  3.50850  0.12621  3.40512     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01946  3.94929        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twoi_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:35:46 2012
NSEQ  6
EFFN  3.219727
CKSUM 1018979143
STATS LOCAL MSV       -8.1293  0.71931
STATS LOCAL VITERBI   -7.7358  0.71931
STATS LOCAL FORWARD   -4.1604  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.86045  1.20726  1.08050  1.58009
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  0.00000        *
      1   2.92399  3.55362  0.12096  3.45477      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
      2   3.39443  0.13492  3.44551  2.80075      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
      3   2.92399  3.55362  0.12096  3.45477      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
      4   3.39443  0.13492  3.44551  2.80075      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
      5   3.39443  0.13492  3.44551  2.80075      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
      6   3.39443  0.13492  3.44551  2.80075      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
      7   2.92399  3.55362  0.12096  3.45477      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
      8   0.14640  3.34673  2.78009  3.24524      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
      9   2.92399  3.55362  0.12096  3.45477      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     10   2.92399  3.55362  0.12096  3.45477     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     11   3.39443  0.13492  3.44551  2.80075     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     12   3.05488  2.57367  3.10432  0.18421     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     13   3.39443  0.13492  3.44551  2.80075     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     14   2.92399  3.55362  0.12096  3.45477     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     15   3.05488  2.57367  3.10432  0.18421     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     16   0.14640  3.34673  2.78009  3.24524     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     17   3.39443  0.13492  3.44551  2.80075     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     18   3.39443  0.13492  3.44551  2.80075     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     19   0.52608  2.60866  1.38344  2.46821     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     20   0.14640  3.34673  2.78009  3.24524     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     21   2.92399  3.55362  0.12096  3.45477     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     22   2.92399  3.55362  0.12096  3.45477     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     23   2.92399  3.55362  0.12096  3.45477     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     24   3.39443  0.13492  3.44551  2.80075     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     25   0.14640  3.34673  2.78009  3.24524     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     26   3.05488  2.57367  3.10432  0.18421     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     27   2.92399  3.55362  0.12096  3.45477     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     28   3.05488  2.57367  3.10432  0.18421     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     29   3.39443  0.13492  3.44551  2.80075     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     30   3.05488  2.57367  3.10432  0.18421     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     31   2.92399  3.55362  0.12096  3.45477     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     32   3.05488  2.57367  3.10432  0.18421     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     33   3.39443  0.13492  3.44551  2.80075     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     34   3.05488  2.57367  3.10432  0.18421     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     35   2.92399  3.55362  0.12096  3.45477     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     36   0.14640  3.34673  2.78009  3.24524     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     37   2.92399  3.55362  0.12096  3.45477     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     38   3.39443  0.13492  3.44551  2.80075     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     39   2.92399  3.55362  0.12096  3.45477     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     40   3.05488  2.57367  3.10432  0.18421     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     41   3.39443  0.13492  3.44551  2.80075     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     42   3.39443  0.13492  3.44551  2.80075     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     43   2.92399  3.55362  0.12096  3.45477     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     44   3.05488  2.57367  3.10432  0.18421     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     45   2.92399  3.55362  0.12096  3.45477     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01898  3.97401        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twoj_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:35:54 2012
NSEQ  5
EFFN  3.315430
CKSUM 1914285711
STATS LOCAL MSV       -8.1077  0.71931
STATS LOCAL VITERBI   -7.6269  0.71931
STATS LOCAL FORWARD   -4.2009  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81863  1.16585  1.08606  1.66839
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  0.00000        *
      1   2.94591  3.58540  0.11742  3.48982      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      2   3.43043  0.13053  3.48000  2.82705      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      3   2.94591  3.58540  0.11742  3.48982      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      4   3.43043  0.13053  3.48000  2.82705      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      5   3.43043  0.13053  3.48000  2.82705      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      6   2.43265  0.73484  2.50519  1.04710      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      7   2.94591  3.58540  0.11742  3.48982      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      8   0.14220  3.37794  2.80041  3.27938      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      9   2.94591  3.58540  0.11742  3.48982      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     10   2.94591  3.58540  0.11742  3.48982     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     11   3.43043  0.13053  3.48000  2.82705     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     12   3.08626  2.59365  3.13451  0.17906     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     13   3.43043  0.13053  3.48000  2.82705     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     14   2.94591  3.58540  0.11742  3.48982     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     15   3.08626  2.59365  3.13451  0.17906     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     16   0.14220  3.37794  2.80041  3.27938     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     17   3.43043  0.13053  3.48000  2.82705     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     18   3.43043  0.13053  3.48000  2.82705     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     19   2.94591  3.58540  0.11742  3.48982     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     20   0.14220  3.37794  2.80041  3.27938     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     21   2.94591  3.58540  0.11742  3.48982     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     22   2.94591  3.58540  0.11742  3.48982     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     23   2.94591  3.58540  0.11742  3.48982     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     24   3.43043  0.13053  3.48000  2.82705     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     25   0.14220  3.37794  2.80041  3.27938     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     26   3.08626  2.59365  3.13451  0.17906     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     27   2.94591  3.58540  0.11742  3.48982     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     28   2.44453  1.19261  2.51493  0.63689     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     29   3.43043  0.13053  3.48000  2.82705     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     30   3.08626  2.59365  3.13451  0.17906     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     31   2.94591  3.58540  0.11742  3.48982     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     32   3.08626  2.59365  3.13451  0.17906     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     33   3.43043  0.13053  3.48000  2.82705     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     34   3.08626  2.59365  3.13451  0.17906     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     35   2.94591  3.58540  0.11742  3.48982     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     36   0.14220  3.37794  2.80041  3.27938     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     37   2.94591  3.58540  0.11742  3.48982     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     38   3.43043  0.13053  3.48000  2.82705     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     39   2.94591  3.58540  0.11742  3.48982     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     40   3.08626  2.59365  3.13451  0.17906     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     41   3.43043  0.13053  3.48000  2.82705     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     42   3.43043  0.13053  3.48000  2.82705     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     43   0.14220  3.37794  2.80041  3.27938     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     44   3.43043  0.13053  3.48000  2.82705     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     45   2.94591  3.58540  0.11742  3.48982     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01864  3.99184        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twok_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:36:02 2012
NSEQ  7
EFFN  3.168457
CKSUM 4015894505
STATS LOCAL MSV       -8.1875  0.71932
STATS LOCAL VITERBI   -7.6009  0.71932
STATS LOCAL FORWARD   -4.1596  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.93262  1.20466  1.14638  1.43694
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  0.00000        *
      1   2.91185  3.53609  0.12297  3.43546      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      2   3.37463  0.13741  3.42653  2.78623      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      3   2.91185  3.53609  0.12297  3.43546      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      4   3.37463  0.13741  3.42653  2.78623      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      5   3.37463  0.13741  3.42653  2.78623      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      6   3.37463  0.13741  3.42653  2.78623      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      7   2.91185  3.53609  0.12297  3.43546      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      8   0.14877  3.32959  2.76888  3.22651      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      9   2.91185  3.53609  0.12297  3.43546      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     10   2.91185  3.53609  0.12297  3.43546     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     11   3.37463  0.13741  3.42653  2.78623     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     12   3.03775  2.56273  3.08783  0.18710     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     13   3.37463  0.13741  3.42653  2.78623     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     14   3.03775  2.56273  3.08783  0.18710     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     15   3.03775  2.56273  3.08783  0.18710     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     16   0.14877  3.32959  2.76888  3.22651     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     17   3.37463  0.13741  3.42653  2.78623     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     18   3.37463  0.13741  3.42653  2.78623     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     19   2.91185  3.53609  0.12297  3.43546     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     20   0.14877  3.32959  2.76888  3.22651     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     21   2.91185  3.53609  0.12297  3.43546     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     22   2.91185  3.53609  0.12297  3.43546     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     23   2.91185  3.53609  0.12297  3.43546     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     24   3.37463  0.13741  3.42653  2.78623     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     25   0.14877  3.32959  2.76888  3.22651     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     26   3.03775  2.56273  3.08783  0.18710     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     27   2.91185  3.53609  0.12297  3.43546     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     28   3.03775  2.56273  3.08783  0.18710     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     29   3.37463  0.13741  3.42653  2.78623     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     30   3.03775  2.56273  3.08783  0.18710     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     31   2.91185  3.53609  0.12297  3.43546     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     32   3.03775  2.56273  3.08783  0.18710     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     33   3.37463  0.13741  3.42653  2.78623     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     34   3.03775  2.56273  3.08783  0.18710     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     35   2.91185  3.53609  0.12297  3.43546     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     36   0.14877  3.32959  2.76888  3.22651     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     37   2.91185  3.53609  0.12297  3.43546     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     38   3.37463  0.13741  3.42653  2.78623     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     39   2.91185  3.53609  0.12297  3.43546     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     40   3.03775  2.56273  3.08783  0.18710     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     41   3.37463  0.13741  3.42653  2.78623     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     42   3.37463  0.13741  3.42653  2.78623     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     43   3.03775  2.56273  3.08783  0.18710     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     44   3.03775  2.56273  3.08783  0.18710     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     45   2.91185  3.53609  0.12297  3.43546     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01916  3.96432        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twol_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:36:10 2012
NSEQ  2
EFFN  2.000000
CKSUM 644527050
STATS LOCAL MSV       -7.6467  0.72740
STATS LOCAL VITERBI   -8.2973  0.72740
STATS LOCAL FORWARD   -3.3814  0.72740
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82981  1.24206  1.12275  1.48995
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twom_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:36:19 2012
NSEQ  5
EFFN  3.168945
CKSUM 3208013427
STATS LOCAL MSV       -8.2354  0.71934
STATS LOCAL VITERBI   -7.7805  0.71934
STATS LOCAL FORWARD   -4.1144  0.71934
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82194  1.26345  1.14443  1.43882
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  0.00000        *
      1   2.91196  3.53626  0.12295  3.43565      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      2   3.37482  0.13738  3.42671  2.78637      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      3   2.91196  3.53626  0.12295  3.43565      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      4   3.37482  0.13738  3.42671  2.78637      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      5   3.37482  0.13738  3.42671  2.78637      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      6   3.37482  0.13738  3.42671  2.78637      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      7   2.91196  3.53626  0.12295  3.43565      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      8   0.14875  3.32976  2.76899  3.22669      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      9   2.91196  3.53626  0.12295  3.43565      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     10   2.91196  3.53626  0.12295  3.43565     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     11   3.37482  0.13738  3.42671  2.78637     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     12   3.03791  2.56284  3.08799  0.18707     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     13   3.03791  2.56284  3.08799  0.18707     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     14   3.03791  2.56284  3.08799  0.18707     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     15   3.03791  2.56284  3.08799  0.18707     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     16   0.14875  3.32976  2.76899  3.22669     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     17   3.37482  0.13738  3.42671  2.78637     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     18   3.37482  0.13738  3.42671  2.78637     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     19   2.91196  3.53626  0.12295  3.43565     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     20   0.14875  3.32976  2.76899  3.22669     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     21   2.91196  3.53626  0.12295  3.43565     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     22   2.91196  3.53626  0.12295  3.43565     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     23   2.91196  3.53626  0.12295  3.43565     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     24   3.37482  0.13738  3.42671  2.78637     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     25   0.14875  3.32976  2.76899  3.22669     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     26   3.03791  2.56284  3.08799  0.18707     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     27   2.91196  3.53626  0.12295  3.43565     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     28   3.03791  2.56284  3.08799  0.18707     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     29   3.37482  0.13738  3.42671  2.78637     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     30   3.03791  2.56284  3.08799  0.18707     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     31   2.91196  3.53626  0.12295  3.43565     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     32   3.03791  2.56284  3.08799  0.18707     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     33   3.37482  0.13738  3.42671  2.78637     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     34   3.03791  2.56284  3.08799  0.18707     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     35   2.91196  3.53626  0.12295  3.43565     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     36   0.14875  3.32976  2.76899  3.22669     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     37   2.91196  3.53626  0.12295  3.43565     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     38   3.37482  0.13738  3.42671  2.78637     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     39   2.91196  3.53626  0.12295  3.43565     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     40   3.03791  2.56284  3.08799  0.18707     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     41   3.37482  0.13738  3.42671  2.78637     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     42   3.37482  0.13738  3.42671  2.78637     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     43   0.14875  3.32976  2.76899  3.22669     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     44   3.03791  2.56284  3.08799  0.18707     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     45   2.91196  3.53626  0.12295  3.43565     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01916  3.96442        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twon_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:36:26 2012
NSEQ  3
EFFN  3.000000
CKSUM 1433831041
STATS LOCAL MSV       -8.1598  0.71994
STATS LOCAL VITERBI   -7.7732  0.71994
STATS LOCAL FORWARD   -4.1128  0.71994
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81554  1.21056  1.14731  1.50629
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   3.30705  0.14631  3.36166  2.73626      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.86982  3.47591  0.13017  3.36931      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   0.15719  3.27118  2.73043  3.16274      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.86982  3.47591  0.13017  3.36931     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twoo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:36:34 2012
NSEQ  2
EFFN  2.000000
CKSUM 163887748
STATS LOCAL MSV       -7.5850  0.72714
STATS LOCAL VITERBI   -8.2317  0.72714
STATS LOCAL FORWARD   -3.5245  0.72714
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82690  1.29897  1.03409  1.55719
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.53331  3.02441  0.20344  2.88069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twop_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:36:42 2012
NSEQ  3
EFFN  3.000000
CKSUM 1237938417
STATS LOCAL MSV       -7.9602  0.71991
STATS LOCAL VITERBI   -7.6581  0.71991
STATS LOCAL FORWARD   -4.0925  0.71991
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81297  1.27097  1.09445  1.50712
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   3.30705  0.14631  3.36166  2.73626      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.97980  2.52563  3.03204  0.19727      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.86982  3.47591  0.13017  3.36931      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   0.15719  3.27118  2.73043  3.16274      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.86982  3.47591  0.13017  3.36931     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.86982  3.47591  0.13017  3.36931     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twoq_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:36:51 2012
NSEQ  2
EFFN  2.000000
CKSUM 1217683786
STATS LOCAL MSV       -7.4909  0.72753
STATS LOCAL VITERBI   -8.2720  0.72753
STATS LOCAL FORWARD   -3.6887  0.72753
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.74092  1.34564  1.11983  1.43577
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.53331  3.02441  0.20344  2.88069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twor_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:36:57 2012
NSEQ  381
EFFN  3.118996
CKSUM 3010216746
STATS LOCAL MSV       -8.2812  0.71931
STATS LOCAL VITERBI   -7.9258  0.71931
STATS LOCAL FORWARD   -3.5872  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.93097  1.06146  1.09757  1.74090
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  0.00000        *
      1   2.89985  3.51884  0.12499  3.41648      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
      2   3.35520  0.13990  3.40789  2.77192      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
      3   2.89985  3.51884  0.12499  3.41648      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
      4   3.35520  0.13990  3.40789  2.77192      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
      5   3.35520  0.13990  3.40789  2.77192      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
      6   3.35520  0.13990  3.40789  2.77192      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
      7   2.89985  3.51884  0.12499  3.41648      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
      8   0.15114  3.31278  2.75786  3.20814      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
      9   2.89985  3.51884  0.12499  3.41648      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     10   2.89985  3.51884  0.12499  3.41648     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     11   3.28568  0.15570  3.34009  2.64040     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     12   3.02100  2.55203  3.07171  0.18997     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     13   3.02100  2.55203  3.07171  0.18997     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     14   2.89985  3.51884  0.12499  3.41648     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     15   3.02100  2.55203  3.07171  0.18997     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     16   3.35520  0.13990  3.40789  2.77192     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     17   3.35520  0.13990  3.40789  2.77192     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     18   3.35520  0.13990  3.40789  2.77192     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     19   2.67361  3.40631  0.14975  3.29928     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     20   0.15114  3.31278  2.75786  3.20814     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     21   2.89985  3.51884  0.12499  3.41648     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     22   2.89985  3.51884  0.12499  3.41648     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     23   2.89985  3.51884  0.12499  3.41648     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     24   3.35520  0.13990  3.40789  2.77192     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     25   0.15114  3.31278  2.75786  3.20814     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     26   3.02100  2.55203  3.07171  0.18997     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     27   2.89985  3.51884  0.12499  3.41648     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     28   3.27238  0.15886  3.32714  2.61634     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     29   3.35520  0.13990  3.40789  2.77192     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     30   3.02100  2.55203  3.07171  0.18997     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     31   2.89985  3.51884  0.12499  3.41648     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     32   3.29487  0.15354  3.34904  2.65722     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     33   3.35520  0.13990  3.40789  2.77192     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     34   3.02100  2.55203  3.07171  0.18997     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     35   2.89985  3.51884  0.12499  3.41648     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     36   0.15114  3.31278  2.75786  3.20814     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     37   2.89985  3.51884  0.12499  3.41648     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     38   3.35520  0.13990  3.40789  2.77192     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     39   2.89985  3.51884  0.12499  3.41648     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     40   3.02100  2.55203  3.07171  0.18997     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     41   3.35520  0.13990  3.40789  2.77192     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     42   0.15114  3.31278  2.75786  3.20814     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     43   3.35520  0.13990  3.40789  2.77192     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     44   3.25363  0.16339  3.30892  2.58292     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
     45   2.89985  3.51884  0.12499  3.41648     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01935  3.95489        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twos_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:37:03 2012
NSEQ  3
EFFN  3.000000
CKSUM 2079554623
STATS LOCAL MSV       -8.0923  0.71963
STATS LOCAL VITERBI   -7.8815  0.71963
STATS LOCAL FORWARD   -3.7154  0.71963
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92700  1.06154  1.09883  1.74164
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   3.30705  0.14631  3.36166  2.73626      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.86982  3.47591  0.13017  3.36931      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   0.15719  3.27118  2.73043  3.16274      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   0.15719  3.27118  2.73043  3.16274     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   3.30705  0.14631  3.36166  2.73626     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   3.30705  0.14631  3.36166  2.73626     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   3.30705  0.14631  3.36166  2.73626     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.86982  3.47591  0.13017  3.36931     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twot_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:37:10 2012
NSEQ  3
EFFN  3.000000
CKSUM 1228495162
STATS LOCAL MSV       -8.0485  0.71986
STATS LOCAL VITERBI   -7.8652  0.71986
STATS LOCAL FORWARD   -3.8213  0.71986
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.91826  1.26987  1.04606  1.50981
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   3.30705  0.14631  3.36166  2.73626      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.86982  3.47591  0.13017  3.36931      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   0.15719  3.27118  2.73043  3.16274      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.86982  3.47591  0.13017  3.36931     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.97980  2.52563  3.03204  0.19727     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.86982  3.47591  0.13017  3.36931     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.86982  3.47591  0.13017  3.36931     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twou_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:37:17 2012
NSEQ  3
EFFN  3.000000
CKSUM 373476516
STATS LOCAL MSV       -8.0655  0.71980
STATS LOCAL VITERBI   -7.9691  0.71980
STATS LOCAL FORWARD   -3.6833  0.71980
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92304  1.15872  1.09717  1.57922
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   3.30705  0.14631  3.36166  2.73626      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.86982  3.47591  0.13017  3.36931      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   0.15719  3.27118  2.73043  3.16274      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.97980  2.52563  3.03204  0.19727     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   3.30705  0.14631  3.36166  2.73626     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   3.30705  0.14631  3.36166  2.73626     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.86982  3.47591  0.13017  3.36931     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Marchantiophyta_58S_end_twox_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 17:37:24 2012
NSEQ  2
EFFN  2.000000
CKSUM 2845665714
STATS LOCAL MSV       -7.6619  0.72718
STATS LOCAL VITERBI   -8.4364  0.72718
STATS LOCAL FORWARD   -3.1326  0.72718
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.83385  1.15118  1.12465  1.61359
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.53331  3.02441  0.20344  2.88069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.57915  2.25909  2.64442  0.28946     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.81865  0.23582  2.88868  2.35662     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Marchantiophyta_58S_start_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:17:40 2012
NSEQ  727
EFFN  3.469379
CKSUM 3115831225
STATS LOCAL MSV       -7.5086  0.71932
STATS LOCAL VITERBI   -7.5251  0.71932
STATS LOCAL FORWARD   -4.0424  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26902  1.34994  1.43847  1.50352
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  0.00000        *
      1   2.11695  0.76692  1.75306  1.41917      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
      2   2.87784  3.58971  0.12120  3.49715      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
      3   0.13599  3.42610  2.83161  3.33214      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
      4   3.48585  0.12409  3.53304  2.86723      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
      5   3.13512  2.62469  3.18149  0.17136      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
      6   3.48585  0.12409  3.53304  2.86723      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
      7   3.13512  2.62469  3.18149  0.17136      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
      8   3.48585  0.12409  3.53304  2.86723      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
      9   0.14976  3.37255  2.70286  3.27615      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     10   2.97924  3.63406  0.11222  3.54358     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     11   3.48585  0.12409  3.53304  2.86723     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     12   0.13599  3.42610  2.83161  3.33214     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     13   0.13599  3.42610  2.83161  3.33214     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     14   3.48585  0.12409  3.53304  2.86723     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     15   2.97924  3.63406  0.11222  3.54358     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     16   2.97924  3.63406  0.11222  3.54358     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     17   0.13599  3.42610  2.83161  3.33214     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     18   3.13512  2.62469  3.18149  0.17136     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     19   0.13599  3.42610  2.83161  3.33214     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     20   3.13512  2.62469  3.18149  0.17136     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     21   3.48585  0.12409  3.53304  2.86723     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     22   3.13512  2.62469  3.18149  0.17136     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     23   2.99355  2.40996  2.97280  0.21207     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     24   2.97924  3.63406  0.11222  3.54358     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     25   2.97924  3.63406  0.11222  3.54358     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     26   3.48585  0.12409  3.53304  2.86723     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     27   3.13512  2.62469  3.18149  0.17136     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     28   3.48585  0.12409  3.53304  2.86723     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     29   2.90255  2.09775  2.95785  0.26077     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     30   3.01545  2.33722  3.06631  0.21346     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     31   2.93739  3.42661  0.12487  3.44547     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     32   3.48585  0.12409  3.53304  2.86723     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     33   0.13599  3.42610  2.83161  3.33214     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     34   0.13599  3.42610  2.83161  3.33214     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     35   3.48585  0.12409  3.53304  2.86723     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     36   2.97924  3.63406  0.11222  3.54358     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     37   0.13599  3.42610  2.83161  3.33214     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     38   3.13512  2.62469  3.18149  0.17136     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     39   2.97924  3.63406  0.11222  3.54358     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     40   0.13599  3.42610  2.83161  3.33214     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     41   0.13599  3.42610  2.83161  3.33214     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     42   2.97924  3.63406  0.11222  3.54358     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     43   0.13599  3.42610  2.83161  3.33214     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     44   0.13599  3.42610  2.83161  3.33214     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
     45   3.48585  0.12409  3.53304  2.86723     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01812  4.01987        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Marchantiophyta_4_LSU_start_eight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 18:26:42 2012
NSEQ  3
EFFN  3.000000
CKSUM 105693907
STATS LOCAL MSV       -8.1416  0.72054
STATS LOCAL VITERBI   -7.6064  0.72054
STATS LOCAL FORWARD   -3.9951  0.72054
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27697  1.35997  1.37204  1.55656
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.43223  0.62271  2.50508  1.22417     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Marchantiophyta_4_LSU_start_five_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 18:26:11 2012
NSEQ  15
EFFN  3.204346
CKSUM 1688665315
STATS LOCAL MSV       -8.1859  0.71932
STATS LOCAL VITERBI   -7.5786  0.71932
STATS LOCAL FORWARD   -4.0935  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28069  1.26783  1.45149  1.57749
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  0.00000        *
      1   3.04977  2.57040  3.09940  0.18507      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
      2   3.04977  2.57040  3.09940  0.18507      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
      3   3.38853  0.13565  3.43985  2.79643      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
      4   2.92038  3.54839  0.12156  3.44902      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
      5   2.92038  3.54839  0.12156  3.44902      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
      6   0.14711  3.34162  2.77675  3.23965      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
      7   3.38853  0.13565  3.43985  2.79643      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
      8   3.38853  0.13565  3.43985  2.79643      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
      9   3.04977  2.57040  3.09940  0.18507      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     10   3.38853  0.13565  3.43985  2.79643     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     11   0.14711  3.34162  2.77675  3.23965     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     12   2.92038  3.54839  0.12156  3.44902     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     13   0.14711  3.34162  2.77675  3.23965     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     14   3.04977  2.57040  3.09940  0.18507     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     15   3.38853  0.13565  3.43985  2.79643     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     16   0.14711  3.34162  2.77675  3.23965     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     17   2.92038  3.54839  0.12156  3.44902     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     18   2.92038  3.54839  0.12156  3.44902     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     19   3.38853  0.13565  3.43985  2.79643     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     20   0.14711  3.34162  2.77675  3.23965     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     21   0.14711  3.34162  2.77675  3.23965     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     22   2.92038  3.54839  0.12156  3.44902     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     23   0.14711  3.34162  2.77675  3.23965     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     24   3.38853  0.13565  3.43985  2.79643     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     25   3.38853  0.13565  3.43985  2.79643     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     26   0.14711  3.34162  2.77675  3.23965     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     27   3.38853  0.13565  3.43985  2.79643     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     28   3.38853  0.13565  3.43985  2.79643     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     29   3.38853  0.13565  3.43985  2.79643     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     30   2.92038  3.54839  0.12156  3.44902     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     31   3.38853  0.13565  3.43985  2.79643     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     32   3.04977  2.57040  3.09940  0.18507     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     33   2.92038  3.54839  0.12156  3.44902     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     34   0.14711  3.34162  2.77675  3.23965     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     35   2.92038  3.54839  0.12156  3.44902     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     36   3.04977  2.57040  3.09940  0.18507     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     37   3.04977  2.57040  3.09940  0.18507     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     38   3.04977  2.57040  3.09940  0.18507     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     39   0.14711  3.34162  2.77675  3.23965     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     40   0.14711  3.34162  2.77675  3.23965     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     41   2.92038  3.54839  0.12156  3.44902     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     42   3.38853  0.13565  3.43985  2.79643     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     43   0.14711  3.34162  2.77675  3.23965     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     44   3.04977  2.57040  3.09940  0.18507     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
     45   0.14711  3.34162  2.77675  3.23965     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01903  3.97111        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Marchantiophyta_4_LSU_start_four_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 18:26:03 2012
NSEQ  6
EFFN  3.196289
CKSUM 96037354
STATS LOCAL MSV       -8.2136  0.71931
STATS LOCAL VITERBI   -7.6391  0.71931
STATS LOCAL FORWARD   -4.0258  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.22379  1.20916  1.52738  1.65897
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  0.00000        *
      1   3.38542  0.13604  3.43688  2.79415      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
      2   3.04708  2.56869  3.09681  0.18552      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
      3   3.38542  0.13604  3.43688  2.79415      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
      4   2.91847  3.54565  0.12187  3.44599      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
      5   2.91847  3.54565  0.12187  3.44599      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
      6   0.14748  3.33893  2.77499  3.23671      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
      7   3.38542  0.13604  3.43688  2.79415      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
      8   3.38542  0.13604  3.43688  2.79415      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
      9   3.04708  2.56869  3.09681  0.18552      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     10   3.38542  0.13604  3.43688  2.79415     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     11   0.14748  3.33893  2.77499  3.23671     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     12   2.91847  3.54565  0.12187  3.44599     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     13   0.14748  3.33893  2.77499  3.23671     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     14   3.04708  2.56869  3.09681  0.18552     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     15   3.38542  0.13604  3.43688  2.79415     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     16   0.14748  3.33893  2.77499  3.23671     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     17   2.91847  3.54565  0.12187  3.44599     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     18   0.14748  3.33893  2.77499  3.23671     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     19   3.38542  0.13604  3.43688  2.79415     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     20   0.14748  3.33893  2.77499  3.23671     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     21   0.14748  3.33893  2.77499  3.23671     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     22   2.91847  3.54565  0.12187  3.44599     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     23   0.14748  3.33893  2.77499  3.23671     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     24   3.38542  0.13604  3.43688  2.79415     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     25   3.38542  0.13604  3.43688  2.79415     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     26   0.14748  3.33893  2.77499  3.23671     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     27   3.38542  0.13604  3.43688  2.79415     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     28   3.38542  0.13604  3.43688  2.79415     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     29   3.38542  0.13604  3.43688  2.79415     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     30   2.91847  3.54565  0.12187  3.44599     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     31   3.38542  0.13604  3.43688  2.79415     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     32   3.04708  2.56869  3.09681  0.18552     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     33   2.91847  3.54565  0.12187  3.44599     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     34   0.14748  3.33893  2.77499  3.23671     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     35   2.91847  3.54565  0.12187  3.44599     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     36   3.04708  2.56869  3.09681  0.18552     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     37   3.04708  2.56869  3.09681  0.18552     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     38   3.04708  2.56869  3.09681  0.18552     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     39   0.14748  3.33893  2.77499  3.23671     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     40   0.14748  3.33893  2.77499  3.23671     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     41   2.91847  3.54565  0.12187  3.44599     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     42   3.38542  0.13604  3.43688  2.79415     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     43   0.14748  3.33893  2.77499  3.23671     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     44   3.04708  2.56869  3.09681  0.18552     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
     45   0.14748  3.33893  2.77499  3.23671     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01906  3.96959        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Marchantiophyta_4_LSU_start_nine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 18:26:52 2012
NSEQ  2
EFFN  2.000000
CKSUM 647530765
STATS LOCAL MSV       -7.4739  0.72783
STATS LOCAL VITERBI   -8.0723  0.72783
STATS LOCAL FORWARD   -3.4690  0.72783
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.23999  1.34853  1.43256  1.54979
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Marchantiophyta_4_LSU_start_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 18:25:39 2012
NSEQ  20
EFFN  3.540039
CKSUM 3998707778
STATS LOCAL MSV       -7.6760  0.71934
STATS LOCAL VITERBI   -7.5419  0.71934
STATS LOCAL FORWARD   -4.1193  0.71934
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27980  1.23983  1.44541  1.62545
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  0.00000        *
      1   2.46911  0.73562  2.54114  1.02903      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
      2   3.15689  2.63850  3.20241  0.16805      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
      3   3.11759  0.21933  3.17647  2.19873      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
      4   2.99379  3.65542  0.11002  3.56722      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
      5   2.99379  3.65542  0.11002  3.56722      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
      6   0.13334  3.44739  2.84535  3.35549      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
      7   3.51029  0.12137  3.55641  2.88485      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
      8   3.51029  0.12137  3.55641  2.88485      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
      9   3.15689  2.63850  3.20241  0.16805      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     10   3.51029  0.12137  3.55641  2.88485     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     11   0.13334  3.44739  2.84535  3.35549     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     12   2.99379  3.65542  0.11002  3.56722     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     13   0.13334  3.44739  2.84535  3.35549     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     14   3.15689  2.63850  3.20241  0.16805     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     15   3.51029  0.12137  3.55641  2.88485     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     16   0.32078  2.91982  1.83681  2.79446     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     17   2.99379  3.65542  0.11002  3.56722     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     18   2.33938  3.31208  0.19059  3.20151     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     19   3.51029  0.12137  3.55641  2.88485     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     20   0.13334  3.44739  2.84535  3.35549     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     21   0.13334  3.44739  2.84535  3.35549     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     22   2.99379  3.65542  0.11002  3.56722     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     23   0.13334  3.44739  2.84535  3.35549     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     24   3.51029  0.12137  3.55641  2.88485     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     25   3.10712  0.22270  3.16631  2.18250     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     26   0.13334  3.44739  2.84535  3.35549     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     27   3.51029  0.12137  3.55641  2.88485     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     28   3.51029  0.12137  3.55641  2.88485     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     29   3.51029  0.12137  3.55641  2.88485     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     30   2.99379  3.65542  0.11002  3.56722     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     31   3.51029  0.12137  3.55641  2.88485     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     32   2.91081  2.08007  2.96599  0.26249     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     33   2.99379  3.65542  0.11002  3.56722     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     34   0.13334  3.44739  2.84535  3.35549     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     35   2.99379  3.65542  0.11002  3.56722     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     36   3.15689  2.63850  3.20241  0.16805     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     37   3.15689  2.63850  3.20241  0.16805     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     38   3.15689  2.63850  3.20241  0.16805     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     39   0.13334  3.44739  2.84535  3.35549     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     40   0.13334  3.44739  2.84535  3.35549     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     41   2.99379  3.65542  0.11002  3.56722     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     42   3.51029  0.12137  3.55641  2.88485     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     43   0.13334  3.44739  2.84535  3.35549     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     44   3.15689  2.63850  3.20241  0.16805     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
     45   0.13334  3.44739  2.84535  3.35549     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01789  4.03248        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Marchantiophyta_4_LSU_start_seven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 18:26:33 2012
NSEQ  7
EFFN  3.188965
CKSUM 2453683499
STATS LOCAL MSV       -8.1588  0.71933
STATS LOCAL VITERBI   -7.6809  0.71933
STATS LOCAL FORWARD   -4.0969  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34227  1.26850  1.38186  1.57801
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  0.00000        *
      1   3.04463  2.56713  3.09446  0.18593      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
      2   3.04463  2.56713  3.09446  0.18593      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
      3   3.38259  0.13640  3.43416  2.79207      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
      4   2.91674  3.54314  0.12216  3.44323      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
      5   2.91674  3.54314  0.12216  3.44323      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
      6   0.14782  3.33648  2.77339  3.23404      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
      7   3.38259  0.13640  3.43416  2.79207      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
      8   3.38259  0.13640  3.43416  2.79207      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
      9   3.04463  2.56713  3.09446  0.18593      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     10   3.38259  0.13640  3.43416  2.79207     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     11   0.14782  3.33648  2.77339  3.23404     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     12   2.91674  3.54314  0.12216  3.44323     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     13   0.14782  3.33648  2.77339  3.23404     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     14   3.04463  2.56713  3.09446  0.18593     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     15   3.38259  0.13640  3.43416  2.79207     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     16   2.91674  3.54314  0.12216  3.44323     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     17   2.91674  3.54314  0.12216  3.44323     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     18   2.91674  3.54314  0.12216  3.44323     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     19   3.38259  0.13640  3.43416  2.79207     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     20   0.14782  3.33648  2.77339  3.23404     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     21   0.14782  3.33648  2.77339  3.23404     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     22   2.91674  3.54314  0.12216  3.44323     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     23   0.14782  3.33648  2.77339  3.23404     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     24   3.38259  0.13640  3.43416  2.79207     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     25   3.38259  0.13640  3.43416  2.79207     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     26   0.14782  3.33648  2.77339  3.23404     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     27   3.38259  0.13640  3.43416  2.79207     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     28   3.38259  0.13640  3.43416  2.79207     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     29   3.38259  0.13640  3.43416  2.79207     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     30   2.91674  3.54314  0.12216  3.44323     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     31   3.38259  0.13640  3.43416  2.79207     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     32   3.04463  2.56713  3.09446  0.18593     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     33   2.91674  3.54314  0.12216  3.44323     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     34   0.14782  3.33648  2.77339  3.23404     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     35   2.91674  3.54314  0.12216  3.44323     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     36   3.04463  2.56713  3.09446  0.18593     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     37   3.04463  2.56713  3.09446  0.18593     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     38   3.04463  2.56713  3.09446  0.18593     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     39   0.14782  3.33648  2.77339  3.23404     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     40   0.14782  3.33648  2.77339  3.23404     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     41   2.91674  3.54314  0.12216  3.44323     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     42   3.38259  0.13640  3.43416  2.79207     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     43   0.14782  3.33648  2.77339  3.23404     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     44   3.04463  2.56713  3.09446  0.18593     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
     45   0.14782  3.33648  2.77339  3.23404     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01909  3.96821        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Marchantiophyta_4_LSU_start_six_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 18:26:23 2012
NSEQ  3
EFFN  3.000000
CKSUM 4290214155
STATS LOCAL MSV       -8.1730  0.72006
STATS LOCAL VITERBI   -7.7143  0.72006
STATS LOCAL FORWARD   -3.8565  0.72006
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28332  1.21312  1.45038  1.65477
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   0.15719  3.27118  2.73043  3.16274     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   3.30705  0.14631  3.36166  2.73626     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Marchantiophyta_4_LSU_start_ten_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 18:27:01 2012
NSEQ  2
EFFN  2.000000
CKSUM 817679163
STATS LOCAL MSV       -7.7131  0.72754
STATS LOCAL VITERBI   -8.3485  0.72754
STATS LOCAL FORWARD   -3.4669  0.72754
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34554  1.29909  1.31832  1.61326
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.81865  0.23582  2.88868  2.35662     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.53331  3.02441  0.20344  2.88069     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Marchantiophyta_4_LSU_start_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 18:25:55 2012
NSEQ  3
EFFN  3.000000
CKSUM 2635444069
STATS LOCAL MSV       -8.1670  0.72023
STATS LOCAL VITERBI   -7.6237  0.72023
STATS LOCAL FORWARD   -4.0458  0.72023
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28119  1.32936  1.44798  1.50236
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   3.30705  0.14631  3.36166  2.73626     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Marchantiophyta_4_LSU_start_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Jan 25 18:25:46 2012
NSEQ  21
EFFN  3.309448
CKSUM 3528604808
STATS LOCAL MSV       -8.1581  0.71931
STATS LOCAL VITERBI   -7.4789  0.71931
STATS LOCAL FORWARD   -4.1423  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27636  1.38744  1.46044  1.43087
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  0.00000        *
      1   3.42822  0.13079  3.47788  2.82543      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
      2   3.08433  2.59242  3.13264  0.17937      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
      3   3.08433  2.59242  3.13264  0.17937      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
      4   2.59337  2.93933  0.25330  2.34244      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
      5   2.94456  3.58345  0.11763  3.48767      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
      6   0.14246  3.37602  2.79917  3.27728      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
      7   3.42822  0.13079  3.47788  2.82543      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
      8   3.42822  0.13079  3.47788  2.82543      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
      9   3.08433  2.59242  3.13264  0.17937      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     10   3.42822  0.13079  3.47788  2.82543     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     11   0.14246  3.37602  2.79917  3.27728     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     12   2.94456  3.58345  0.11763  3.48767     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     13   0.14246  3.37602  2.79917  3.27728     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     14   3.08433  2.59242  3.13264  0.17937     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     15   3.42822  0.13079  3.47788  2.82543     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     16   0.14246  3.37602  2.79917  3.27728     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     17   2.94456  3.58345  0.11763  3.48767     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     18   2.94456  3.58345  0.11763  3.48767     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     19   3.42822  0.13079  3.47788  2.82543     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     20   0.14246  3.37602  2.79917  3.27728     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     21   0.14246  3.37602  2.79917  3.27728     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     22   2.94456  3.58345  0.11763  3.48767     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     23   0.14246  3.37602  2.79917  3.27728     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     24   3.08433  2.59242  3.13264  0.17937     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     25   3.08433  2.59242  3.13264  0.17937     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     26   0.14246  3.37602  2.79917  3.27728     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     27   3.42822  0.13079  3.47788  2.82543     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     28   3.42822  0.13079  3.47788  2.82543     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     29   3.42822  0.13079  3.47788  2.82543     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     30   2.94456  3.58345  0.11763  3.48767     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     31   3.42822  0.13079  3.47788  2.82543     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     32   3.08433  2.59242  3.13264  0.17937     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     33   2.94456  3.58345  0.11763  3.48767     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     34   0.14246  3.37602  2.79917  3.27728     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     35   2.94456  3.58345  0.11763  3.48767     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     36   3.08433  2.59242  3.13264  0.17937     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     37   3.08433  2.59242  3.13264  0.17937     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     38   3.08433  2.59242  3.13264  0.17937     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     39   0.14246  3.37602  2.79917  3.27728     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     40   0.14246  3.37602  2.79917  3.27728     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     41   2.94456  3.58345  0.11763  3.48767     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     42   3.42822  0.13079  3.47788  2.82543     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     43   0.14246  3.37602  2.79917  3.27728     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     44   3.08433  2.59242  3.13264  0.17937     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
     45   0.14246  3.37602  2.79917  3.27728     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01866  3.99073        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Marchantiophyta_1_SSU_end_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Tue Jan 24 11:12:54 2012
NSEQ  199
EFFN  3.227798
CKSUM 1341977593
STATS LOCAL MSV       -7.9719  0.71931
STATS LOCAL VITERBI   -7.6787  0.71931
STATS LOCAL FORWARD   -4.0863  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33255  1.62894  1.18902  1.44588
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  0.00000        *
      1   0.14604  3.34940  2.78183  3.24816      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
      2   2.92588  3.55634  0.12065  3.45778      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
      3   3.05756  2.57537  3.10690  0.18376      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
      4   3.39751  0.13454  3.44846  2.80301      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
      5   2.92588  3.55634  0.12065  3.45778      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
      6   3.05756  2.57537  3.10690  0.18376      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
      7   0.14604  3.34940  2.78183  3.24816      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
      8   0.14604  3.34940  2.78183  3.24816      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
      9   3.39751  0.13454  3.44846  2.80301      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     10   0.14604  3.34940  2.78183  3.24816     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     11   0.14604  3.34940  2.78183  3.24816     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     12   2.92588  3.55634  0.12065  3.45778     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     13   2.92588  3.55634  0.12065  3.45778     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     14   3.05756  2.57537  3.10690  0.18376     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     15   3.05756  2.57537  3.10690  0.18376     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     16   3.05756  2.57537  3.10690  0.18376     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     17   3.26849  0.15489  3.20294  2.73664     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     18   3.39751  0.13454  3.44846  2.80301     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     19   2.92588  3.55634  0.12065  3.45778     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     20   3.05756  2.57537  3.10690  0.18376     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     21   0.14604  3.34940  2.78183  3.24816     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04062  3.99412  3.84540  1.46634  0.26236  1.09861  0.40547
     22   2.92212  3.55092  0.12127  3.45180     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99116  3.99116  1.46634  0.26236  1.00196  0.45754
     23   2.92588  3.55634  0.12065  3.45778     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     24   3.05756  2.57537  3.10690  0.18376     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     25   2.92588  3.55634  0.12065  3.45778     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     26   0.14604  3.34940  2.78183  3.24816     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     27   0.14604  3.34940  2.78183  3.24816     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     28   3.39751  0.13454  3.44846  2.80301     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     29   3.39751  0.13454  3.44846  2.80301     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     30   3.05756  2.57537  3.10690  0.18376     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     31   2.92588  3.55634  0.12065  3.45778     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     32   3.39751  0.13454  3.44846  2.80301     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     33   2.92588  3.55634  0.12065  3.45778     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     34   2.92588  3.55634  0.12065  3.45778     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     35   0.14604  3.34940  2.78183  3.24816     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     36   0.14604  3.34940  2.78183  3.24816     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     37   2.92588  3.55634  0.12065  3.45778     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     38   2.92588  3.55634  0.12065  3.45778     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     39   0.14604  3.34940  2.78183  3.24816     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     40   3.05756  2.57537  3.10690  0.18376     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     41   3.39751  0.13454  3.44846  2.80301     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     42   0.14604  3.34940  2.78183  3.24816     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     43   3.05756  2.57537  3.10690  0.18376     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     44   3.05756  2.57537  3.10690  0.18376     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
     45   2.92588  3.55634  0.12065  3.45778     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01895  3.97552        *  1.46634  0.26236  0.00000        *
//