view ITSx_db/HMMs/T.hmm @ 7:d74a601111f2 draft

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date Fri, 05 Jun 2015 11:17:23 -0400
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HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_eight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:57:06 2012
NSEQ  662
EFFN  4.649132
CKSUM 878970887
STATS LOCAL MSV       -6.9557  0.71932
STATS LOCAL VITERBI   -7.5350  0.71932
STATS LOCAL FORWARD   -3.7755  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.86570  1.07040  1.08935  1.79633
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  0.00000        *
      1   3.17620  3.92530  0.08600  3.86688      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
      2   3.82361  0.09186  3.85519  3.10671      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
      3   3.82361  0.09186  3.85519  3.10671      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
      4   3.57901  0.14044  3.62229  2.57183      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
      5   1.93587  1.39029  0.83718  1.75004      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
      6   0.10359  3.72520  3.02434  3.66086      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
      7   0.19844  3.34834  2.27973  3.15742      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
      8   3.17620  3.92530  0.08600  3.86688      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
      9   3.82361  0.09186  3.85519  3.10671      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     10   3.77465  0.10089  3.80859  2.97902     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     11   0.84316  2.18097  1.68775  1.30274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     12   3.24031  2.25577  3.28501  0.20014     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     13   2.81050  1.42383  2.87304  0.44238     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     14   1.22032  1.28525  1.91165  1.27137     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     15   3.17620  3.92530  0.08600  3.86688     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     16   3.17620  3.92530  0.08600  3.86688     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     17   3.55653  0.14545  3.60081  2.53166     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     18   3.35052  0.19783  3.40305  2.19688     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     19   2.73063  3.76185  0.12042  3.68745     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     20   0.10359  3.72520  3.02434  3.66086     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     21   2.82567  3.80301  0.11149  3.73280     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     22   3.17620  3.92530  0.08600  3.86688     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     23   3.17620  3.92530  0.08600  3.86688     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     24   3.82361  0.09186  3.85519  3.10671     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     25   0.10359  3.72520  3.02434  3.66086     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     26   3.76501  0.10270  3.79943  2.95555     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     27   3.06878  3.83900  0.09883  3.64534     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     28   2.75612  1.31587  2.82056  0.49651     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     29   3.70999  0.11326  3.74712  2.82995     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     30   3.45156  2.82621  3.48548  0.12962     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     31   3.17620  3.92530  0.08600  3.86688     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     32   3.82361  0.09186  3.85519  3.10671     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     33   3.82361  0.09186  3.85519  3.10671     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     34   3.45156  2.82621  3.48548  0.12962     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     35   3.17620  3.92530  0.08600  3.86688     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     36   3.14070  3.84248  0.09662  3.59684     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     37   3.17620  3.92530  0.08600  3.86688     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     38   2.65366  0.70233  2.72331  0.99826     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     39   3.17620  3.92530  0.08600  3.86688     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     40   3.45156  2.82621  3.48548  0.12962     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     41   3.77814  0.10024  3.81192  2.98765     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     42   0.12107  3.61002  2.98028  3.31865     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     43   3.76361  0.10296  3.79809  2.95218     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     44   2.62684  3.71265  0.13142  3.63335     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
     45   3.21513  0.24087  3.27225  1.99521     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01493  4.21200        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_eighteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:01:50 2012
NSEQ  32
EFFN  3.222656
CKSUM 2873994334
STATS LOCAL MSV       -8.1370  0.71932
STATS LOCAL VITERBI   -7.7175  0.71932
STATS LOCAL FORWARD   -3.4978  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72186  1.05600  1.08934  1.98789
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  0.00000        *
      1   2.92467  3.55461  0.12085  3.45586      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      2   3.39555  0.13478  3.44658  2.80157      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      3   3.39555  0.13478  3.44658  2.80157      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      4   3.39555  0.13478  3.44658  2.80157      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      5   2.92467  3.55461  0.12085  3.45586      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      6   0.14627  3.34770  2.78072  3.24630      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      7   2.92467  3.55461  0.12085  3.45586      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      8   2.92467  3.55461  0.12085  3.45586      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      9   3.39555  0.13478  3.44658  2.80157      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     10   3.39555  0.13478  3.44658  2.80157     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     11   0.14627  3.34770  2.78072  3.24630     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     12   3.39555  0.13478  3.44658  2.80157     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     13   3.05586  2.57429  3.10526  0.18405     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     14   0.14627  3.34770  2.78072  3.24630     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     15   2.92467  3.55461  0.12085  3.45586     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     16   2.92467  3.55461  0.12085  3.45586     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     17   3.02608  0.23379  3.08751  2.16846     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     18   2.40395  1.10046  2.47543  0.70766     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     19   2.92467  3.55461  0.12085  3.45586     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     20   0.14627  3.34770  2.78072  3.24630     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     21   2.92467  3.55461  0.12085  3.45586     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     22   2.92467  3.55461  0.12085  3.45586     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     23   2.92467  3.55461  0.12085  3.45586     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     24   3.39555  0.13478  3.44658  2.80157     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     25   0.14627  3.34770  2.78072  3.24630     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     26   3.39555  0.13478  3.44658  2.80157     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     27   2.92467  3.55461  0.12085  3.45586     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     28   2.92668  0.27091  2.99060  2.01381     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     29   3.39555  0.13478  3.44658  2.80157     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     30   3.05586  2.57429  3.10526  0.18405     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     31   2.92467  3.55461  0.12085  3.45586     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     32   3.39555  0.13478  3.44658  2.80157     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     33   3.39555  0.13478  3.44658  2.80157     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     34   3.05586  2.57429  3.10526  0.18405     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     35   2.92467  3.55461  0.12085  3.45586     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     36   2.92467  3.55461  0.12085  3.45586     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     37   2.92467  3.55461  0.12085  3.45586     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     38   3.39555  0.13478  3.44658  2.80157     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     39   2.92467  3.55461  0.12085  3.45586     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     40   3.05586  2.57429  3.10526  0.18405     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     41   3.39555  0.13478  3.44658  2.80157     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     42   0.14627  3.34770  2.78072  3.24630     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     43   3.39555  0.13478  3.44658  2.80157     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     44   0.14627  3.34770  2.78072  3.24630     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     45   3.39555  0.13478  3.44658  2.80157     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01897  3.97456        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_eleven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:57:45 2012
NSEQ  17
EFFN  3.141846
CKSUM 144042220
STATS LOCAL MSV       -8.0334  0.71931
STATS LOCAL VITERBI   -7.6576  0.71931
STATS LOCAL FORWARD   -3.7404  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.93155  1.06659  1.09552  1.73426
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  0.00000        *
      1   2.90543  3.52685  0.12405  3.42529      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
      2   3.36422  0.13874  3.41654  2.77857      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
      3   3.36422  0.13874  3.41654  2.77857      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
      4   3.36422  0.13874  3.41654  2.77857      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
      5   2.90543  3.52685  0.12405  3.42529      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
      6   0.15004  3.32058  2.76298  3.21666      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
      7   3.36422  0.13874  3.41654  2.77857      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
      8   2.90543  3.52685  0.12405  3.42529      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
      9   3.36422  0.13874  3.41654  2.77857      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     10   3.36422  0.13874  3.41654  2.77857     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     11   0.15004  3.32058  2.76298  3.21666     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     12   3.02876  2.55699  3.07919  0.18863     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     13   3.02876  2.55699  3.07919  0.18863     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     14   3.36422  0.13874  3.41654  2.77857     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     15   2.90543  3.52685  0.12405  3.42529     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     16   2.90543  3.52685  0.12405  3.42529     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     17   2.75581  0.34631  2.82349  1.77343     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     18   3.36422  0.13874  3.41654  2.77857     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     19   2.90543  3.52685  0.12405  3.42529     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     20   0.15004  3.32058  2.76298  3.21666     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     21   2.90543  3.52685  0.12405  3.42529     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     22   2.90543  3.52685  0.12405  3.42529     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     23   2.90543  3.52685  0.12405  3.42529     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     24   3.36422  0.13874  3.41654  2.77857     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     25   0.15004  3.32058  2.76298  3.21666     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     26   3.36422  0.13874  3.41654  2.77857     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     27   2.90543  3.52685  0.12405  3.42529     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     28   3.02876  2.55699  3.07919  0.18863     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     29   3.36422  0.13874  3.41654  2.77857     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     30   3.02876  2.55699  3.07919  0.18863     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     31   2.90543  3.52685  0.12405  3.42529     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     32   3.36422  0.13874  3.41654  2.77857     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     33   3.36422  0.13874  3.41654  2.77857     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     34   3.02876  2.55699  3.07919  0.18863     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     35   2.90543  3.52685  0.12405  3.42529     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     36   2.90543  3.52685  0.12405  3.42529     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     37   2.90543  3.52685  0.12405  3.42529     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     38   3.02876  2.55699  3.07919  0.18863     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     39   2.90543  3.52685  0.12405  3.42529     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     40   3.02876  2.55699  3.07919  0.18863     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     41   3.36422  0.13874  3.41654  2.77857     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     42   0.15004  3.32058  2.76298  3.21666     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     43   3.36422  0.13874  3.41654  2.77857     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     44   2.90543  3.52685  0.12405  3.42529     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
     45   3.36422  0.13874  3.41654  2.77857     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01926  3.95926        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fifteena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:59:06 2012
NSEQ  8
EFFN  3.105469
CKSUM 803603558
STATS LOCAL MSV       -8.1846  0.71931
STATS LOCAL VITERBI   -7.7807  0.71931
STATS LOCAL FORWARD   -4.0577  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.55243  1.21735  1.14333  1.75159
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  0.00000        *
      1   2.89652  3.51406  0.12555  3.41122      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
      2   3.34983  0.14060  3.40273  2.76795      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
      3   3.34983  0.14060  3.40273  2.76795      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
      4   3.01638  2.54908  3.06726  0.19077      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
      5   2.89652  3.51406  0.12555  3.41122      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
      6   0.15180  3.30814  2.75481  3.20307      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
      7   0.15180  3.30814  2.75481  3.20307      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
      8   2.89652  3.51406  0.12555  3.41122      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
      9   3.34983  0.14060  3.40273  2.76795      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     10   3.34983  0.14060  3.40273  2.76795     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     11   0.15180  3.30814  2.75481  3.20307     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     12   3.01638  2.54908  3.06726  0.19077     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     13   3.34983  0.14060  3.40273  2.76795     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     14   0.15180  3.30814  2.75481  3.20307     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     15   2.89652  3.51406  0.12555  3.41122     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     16   2.89652  3.51406  0.12555  3.41122     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     17   3.34983  0.14060  3.40273  2.76795     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     18   3.01638  2.54908  3.06726  0.19077     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     19   2.89652  3.51406  0.12555  3.41122     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     20   0.15180  3.30814  2.75481  3.20307     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     21   2.89652  3.51406  0.12555  3.41122     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     22   2.89652  3.51406  0.12555  3.41122     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     23   2.89652  3.51406  0.12555  3.41122     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     24   3.34983  0.14060  3.40273  2.76795     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     25   0.15180  3.30814  2.75481  3.20307     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     26   3.34983  0.14060  3.40273  2.76795     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     27   2.89652  3.51406  0.12555  3.41122     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     28   3.01638  2.54908  3.06726  0.19077     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     29   3.34983  0.14060  3.40273  2.76795     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     30   3.01638  2.54908  3.06726  0.19077     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     31   2.89652  3.51406  0.12555  3.41122     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     32   3.34983  0.14060  3.40273  2.76795     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     33   3.34983  0.14060  3.40273  2.76795     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     34   3.01638  2.54908  3.06726  0.19077     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     35   2.89652  3.51406  0.12555  3.41122     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     36   2.89652  3.51406  0.12555  3.41122     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     37   2.89652  3.51406  0.12555  3.41122     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     38   3.34983  0.14060  3.40273  2.76795     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     39   2.89652  3.51406  0.12555  3.41122     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     40   3.01638  2.54908  3.06726  0.19077     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     41   3.34983  0.14060  3.40273  2.76795     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     42   0.15180  3.30814  2.75481  3.20307     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     43   0.15180  3.30814  2.75481  3.20307     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     44   0.15180  3.30814  2.75481  3.20307     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03843  3.97132  3.97132  1.46634  0.26236  1.09861  0.40547
     45   3.34983  0.14060  3.40273  2.76795     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01940  3.95229        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fifteenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:59:15 2012
NSEQ  5
EFFN  3.393555
CKSUM 3509542651
STATS LOCAL MSV       -7.3147  0.71933
STATS LOCAL VITERBI   -7.6680  0.71933
STATS LOCAL FORWARD   -3.7818  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81544  1.21795  1.12415  1.53030
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  0.00000        *
      1   2.96311  3.61046  0.11471  3.51750      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
      2   3.45893  0.12717  3.50729  2.84776      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
      3   3.45893  0.12717  3.50729  2.84776      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
      4   3.45893  0.12717  3.50729  2.84776      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
      5   0.13897  3.40269  2.81647  3.30648      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
      6   0.13897  3.40269  2.81647  3.30648      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
      7   0.13897  3.40269  2.81647  3.30648      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
      8   2.96311  3.61046  0.11471  3.51750      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
      9   3.45893  0.12717  3.50729  2.84776      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     10   3.45893  0.12717  3.50729  2.84776     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     11   3.11130  2.60957  3.15859  0.17506     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     12   3.11130  2.60957  3.15859  0.17506     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     13   2.45725  1.18269  2.52749  0.63863     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     14   2.10374  0.82094  1.19844  1.99275     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     15   2.96311  3.61046  0.11471  3.51750     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     16   2.96311  3.61046  0.11471  3.51750     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     17   3.45893  0.12717  3.50729  2.84776     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     18   3.45893  0.12717  3.50729  2.84776     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     19   2.96311  3.61046  0.11471  3.51750     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     20   0.13897  3.40269  2.81647  3.30648     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     21   2.96311  3.61046  0.11471  3.51750     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     22   2.96311  3.61046  0.11471  3.51750     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     23   2.96311  3.61046  0.11471  3.51750     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     24   3.45893  0.12717  3.50729  2.84776     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     25   0.13897  3.40269  2.81647  3.30648     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     26   3.45893  0.12717  3.50729  2.84776     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     27   2.96311  3.61046  0.11471  3.51750     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     28   3.11130  2.60957  3.15859  0.17506     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     29   3.45893  0.12717  3.50729  2.84776     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     30   3.11130  2.60957  3.15859  0.17506     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     31   2.96311  3.61046  0.11471  3.51750     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     32   3.45893  0.12717  3.50729  2.84776     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     33   3.45893  0.12717  3.50729  2.84776     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     34   3.11130  2.60957  3.15859  0.17506     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     35   2.96311  3.61046  0.11471  3.51750     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     36   2.96311  3.61046  0.11471  3.51750     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     37   2.96311  3.61046  0.11471  3.51750     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     38   3.11130  2.60957  3.15859  0.17506     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     39   2.96311  3.61046  0.11471  3.51750     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     40   3.11130  2.60957  3.15859  0.17506     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     41   3.45893  0.12717  3.50729  2.84776     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     42   0.13897  3.40269  2.81647  3.30648     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     43   3.11130  2.60957  3.15859  0.17506     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     44   2.96311  3.61046  0.11471  3.51750     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     45   3.11130  2.60957  3.15859  0.17506     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01837  4.00616        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fifteenc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:59:22 2012
NSEQ  3
EFFN  3.000000
CKSUM 101589114
STATS LOCAL MSV       -8.1735  0.71999
STATS LOCAL VITERBI   -7.8984  0.71999
STATS LOCAL FORWARD   -4.0579  0.71999
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81067  1.32828  1.09424  1.44083
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   0.15719  3.27118  2.73043  3.16274      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.97980  2.52563  3.03204  0.19727     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   0.15719  3.27118  2.73043  3.16274     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.97980  2.52563  3.03204  0.19727     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.97980  2.52563  3.03204  0.19727     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   3.30705  0.14631  3.36166  2.73626     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.86982  3.47591  0.13017  3.36931     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fifteend_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:59:30 2012
NSEQ  131
EFFN  4.801361
CKSUM 1080313258
STATS LOCAL MSV       -6.9593  0.71932
STATS LOCAL VITERBI   -7.6174  0.71932
STATS LOCAL FORWARD   -3.7137  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.79265  1.06993  1.10887  1.82936
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  0.00000        *
      1   3.19616  3.95461  0.08375  3.89943      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
      2   3.85798  0.08914  3.88792  3.13085      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
      3   3.85798  0.08914  3.88792  3.13085      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
      4   3.85798  0.08914  3.88792  3.13085      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
      5   2.74199  3.28778  0.19714  2.56201      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
      6   0.10072  3.75644  3.04476  3.69519      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
      7   0.47413  2.89412  1.35031  2.76357      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
      8   3.14065  3.82544  0.10063  3.48448      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
      9   3.85798  0.08914  3.88792  3.13085      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     10   3.79514  0.10078  3.82825  2.96338     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     11   0.27431  2.43337  2.65241  2.50495     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     12   2.81648  1.37717  2.87932  0.45931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     13   3.15429  2.00469  3.20368  0.24588     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     14   0.87326  1.37662  1.80543  1.79832     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     15   2.40378  2.35707  0.44543  1.74652     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     16   3.19616  3.95461  0.08375  3.89943     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     17   2.44960  0.55950  2.17179  1.47750     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     18   3.30475  0.21818  3.35916  2.08307     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     19   2.98239  2.83730  0.15414  3.39352     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     20   0.11390  3.70419  2.86929  3.63828     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     21   3.19616  3.95461  0.08375  3.89943     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     22   3.19616  3.95461  0.08375  3.89943     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     23   3.14010  3.52927  0.10104  3.75100     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     24   3.85798  0.08914  3.88792  3.13085     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     25   0.10072  3.75644  3.04476  3.69519     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     26   3.85798  0.08914  3.88792  3.13085     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     27   3.19616  3.95461  0.08375  3.89943     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     28   3.21562  2.13217  3.26215  0.21942     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     29   3.79551  0.10072  3.82859  2.96428     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     30   3.43944  2.69865  3.47444  0.13967     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     31   3.19616  3.95461  0.08375  3.89943     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     32   3.57082  0.14704  3.61478  2.50490     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     33   3.85798  0.08914  3.88792  3.13085     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     34   3.48600  2.84848  3.51857  0.12579     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     35   3.19616  3.95461  0.08375  3.89943     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     36   3.19616  3.95461  0.08375  3.89943     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     37   3.19616  3.95461  0.08375  3.89943     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     38   3.19029  0.13908  3.56005  2.80930     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     39   3.19616  3.95461  0.08375  3.89943     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     40   3.48600  2.84848  3.51857  0.12579     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     41   3.85798  0.08914  3.88792  3.13085     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     42   0.10072  3.75644  3.04476  3.69519     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     43   3.03155  0.13827  3.54533  2.95589     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     44   0.81984  2.48847  1.01425  2.17341     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
     45   3.72146  0.11504  3.75830  2.79450     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01460  4.23430        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fivea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:56:13 2012
NSEQ  4
EFFN  3.261719
CKSUM 831295311
STATS LOCAL MSV       -8.3184  0.71932
STATS LOCAL VITERBI   -7.8263  0.71932
STATS LOCAL FORWARD   -3.4947  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92683  1.06762  1.03950  1.85194
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  0.00000        *
      1   2.93372  3.56771  0.11938  3.47031      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      2   3.41037  0.13295  3.46079  2.81242      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      3   3.41037  0.13295  3.46079  2.81242      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      4   3.41037  0.13295  3.46079  2.81242      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      5   2.93372  3.56771  0.11938  3.47031      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      6   0.14453  3.36055  2.78910  3.26035      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      7   0.14453  3.36055  2.78910  3.26035      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      8   2.93372  3.56771  0.11938  3.47031      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      9   3.41037  0.13295  3.46079  2.81242      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     10   3.41037  0.13295  3.46079  2.81242     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     11   3.06875  2.58250  3.11766  0.18191     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     12   3.06875  2.58250  3.11766  0.18191     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     13   3.41037  0.13295  3.46079  2.81242     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     14   2.93372  3.56771  0.11938  3.47031     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     15   2.93372  3.56771  0.11938  3.47031     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     16   2.93372  3.56771  0.11938  3.47031     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     17   2.39444  0.95945  2.46670  0.81914     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     18   2.39444  0.95945  2.46670  0.81914     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     19   2.93372  3.56771  0.11938  3.47031     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     20   0.14453  3.36055  2.78910  3.26035     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     21   2.93372  3.56771  0.11938  3.47031     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     22   2.93372  3.56771  0.11938  3.47031     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     23   2.93372  3.56771  0.11938  3.47031     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     24   3.41037  0.13295  3.46079  2.81242     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     25   0.14453  3.36055  2.78910  3.26035     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     26   3.41037  0.13295  3.46079  2.81242     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     27   2.93372  3.56771  0.11938  3.47031     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     28   3.41037  0.13295  3.46079  2.81242     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     29   3.41037  0.13295  3.46079  2.81242     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     30   3.06875  2.58250  3.11766  0.18191     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     31   2.93372  3.56771  0.11938  3.47031     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     32   3.41037  0.13295  3.46079  2.81242     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     33   3.41037  0.13295  3.46079  2.81242     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     34   3.06875  2.58250  3.11766  0.18191     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     35   2.93372  3.56771  0.11938  3.47031     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     36   2.93372  3.56771  0.11938  3.47031     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     37   2.93372  3.56771  0.11938  3.47031     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     38   3.41037  0.13295  3.46079  2.81242     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     39   2.93372  3.56771  0.11938  3.47031     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     40   3.06875  2.58250  3.11766  0.18191     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     41   3.41037  0.13295  3.46079  2.81242     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     42   0.14453  3.36055  2.78910  3.26035     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     43   3.41037  0.13295  3.46079  2.81242     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     44   2.93372  3.56771  0.11938  3.47031     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     45   3.41037  0.13295  3.46079  2.81242     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01883  3.98187        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fiveb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:56:22 2012
NSEQ  3
EFFN  3.000000
CKSUM 2338491015
STATS LOCAL MSV       -8.2394  0.72008
STATS LOCAL VITERBI   -7.8111  0.72008
STATS LOCAL FORWARD   -3.6939  0.72008
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.69406  1.11036  1.08253  1.91020
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   0.15719  3.27118  2.73043  3.16274      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   1.22293  1.99551  1.27815  1.23396     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   0.15719  3.27118  2.73043  3.16274     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   3.30705  0.14631  3.36166  2.73626     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.86982  3.47591  0.13017  3.36931     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fortya_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:12:04 2012
NSEQ  18
EFFN  3.783691
CKSUM 1791042696
STATS LOCAL MSV       -6.8741  0.71932
STATS LOCAL VITERBI   -7.8612  0.71932
STATS LOCAL FORWARD   -3.9250  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.00396  1.23406  1.19203  1.30753
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  0.00000        *
      1   3.04077  3.72472  0.10321  3.64403      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
      2   3.58999  0.11296  3.63254  2.94190      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
      3   3.04077  3.72472  0.10321  3.64403      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
      4   3.58999  0.11296  3.63254  2.94190      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
      5   3.58999  0.11296  3.63254  2.94190      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
      6   3.58999  0.11296  3.63254  2.94190      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
      7   3.11499  0.23213  3.17409  2.11243      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
      8   2.61323  1.38493  2.67966  0.49795      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
      9   3.22897  2.68419  3.27168  0.15761      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     10   3.04077  3.72472  0.10321  3.64403     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     11   3.04077  3.72472  0.10321  3.64403     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     12   3.22897  2.68419  3.27168  0.15761     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     13   0.12508  3.51713  2.89021  3.43205     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     14   3.22897  2.68419  3.27168  0.15761     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     15   3.22897  2.68419  3.27168  0.15761     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     16   3.58999  0.11296  3.63254  2.94190     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     17   3.58999  0.11296  3.63254  2.94190     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     18   1.82319  3.02529  0.30812  2.89828     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     19   1.28550  2.07537  1.18600  1.22916     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     20   2.25442  3.31379  0.20081  3.20344     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     21   3.04077  3.72472  0.10321  3.64403     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     22   3.04077  3.72472  0.10321  3.64403     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     23   3.04077  3.72472  0.10321  3.64403     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     24   3.58999  0.11296  3.63254  2.94190     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     25   0.12508  3.51713  2.89021  3.43205     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     26   3.22897  2.68419  3.27168  0.15761     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     27   3.04077  3.72472  0.10321  3.64403     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     28   3.58999  0.11296  3.63254  2.94190     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     29   3.58999  0.11296  3.63254  2.94190     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     30   3.22897  2.68419  3.27168  0.15761     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     31   3.04077  3.72472  0.10321  3.64403     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     32   3.22897  2.68419  3.27168  0.15761     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     33   3.22897  2.68419  3.27168  0.15761     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     34   3.58999  0.11296  3.63254  2.94190     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     35   3.04077  3.72472  0.10321  3.64403     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     36   0.12508  3.51713  2.89021  3.43205     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     37   3.04077  3.72472  0.10321  3.64403     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     38   3.58999  0.11296  3.63254  2.94190     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     39   3.04077  3.72472  0.10321  3.64403     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     40   3.22897  2.68419  3.27168  0.15761     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     41   3.58999  0.11296  3.63254  2.94190     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     42   0.12508  3.51713  2.89021  3.43205     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     43   3.22897  2.68419  3.27168  0.15761     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     44   3.22897  2.68419  3.27168  0.15761     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     45   1.83918  2.36226  2.57124  0.39987     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01714  4.07477        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fortyb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:12:10 2012
NSEQ  2
EFFN  2.000000
CKSUM 32026895
STATS LOCAL MSV       -7.5235  0.72779
STATS LOCAL VITERBI   -8.3648  0.72779
STATS LOCAL FORWARD   -3.5398  0.72779
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.83079  1.23420  1.21908  1.37379
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.81865  0.23582  2.88868  2.35662     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.81865  0.23582  2.88868  2.35662     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fortyc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:12:17 2012
NSEQ  2
EFFN  2.000000
CKSUM 2184984864
STATS LOCAL MSV       -7.4094  0.72832
STATS LOCAL VITERBI   -8.3948  0.72832
STATS LOCAL FORWARD   -3.4932  0.72832
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.66233  1.38558  1.31979  1.22781
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   0.23862  2.84929  2.43386  2.70756     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.81865  0.23582  2.88868  2.35662     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fortyonea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:12:27 2012
NSEQ  2
EFFN  2.000000
CKSUM 2924481573
STATS LOCAL MSV       -7.4101  0.72843
STATS LOCAL VITERBI   -8.3691  0.72843
STATS LOCAL FORWARD   -3.6455  0.72843
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.74074  1.38343  1.32314  1.17898
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   0.23862  2.84929  2.43386  2.70756     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.81865  0.23582  2.88868  2.35662     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fortyoneb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:12:38 2012
NSEQ  2
EFFN  2.000000
CKSUM 3468270774
STATS LOCAL MSV       -7.4190  0.72801
STATS LOCAL VITERBI   -8.4353  0.72801
STATS LOCAL FORWARD   -3.5007  0.72801
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92183  1.28078  1.22118  1.26956
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.81865  0.23582  2.88868  2.35662     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fortyonec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:12:47 2012
NSEQ  2
EFFN  2.000000
CKSUM 2958063581
STATS LOCAL MSV       -7.5700  0.72787
STATS LOCAL VITERBI   -8.2073  0.72787
STATS LOCAL FORWARD   -3.5550  0.72787
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.74595  1.23508  1.27185  1.36886
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.81865  0.23582  2.88868  2.35662     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fortyoned_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:12:59 2012
NSEQ  3
EFFN  3.000000
CKSUM 2944176339
STATS LOCAL MSV       -8.0356  0.72024
STATS LOCAL VITERBI   -7.9811  0.72024
STATS LOCAL FORWARD   -3.7877  0.72024
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.03661  1.31928  1.14956  1.25377
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.86982  3.47591  0.13017  3.36931     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   3.30705  0.14631  3.36166  2.73626     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.97980  2.52563  3.03204  0.19727     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   3.30705  0.14631  3.36166  2.73626     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fortythreea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:13:31 2012
NSEQ  3
EFFN  3.000000
CKSUM 545963122
STATS LOCAL MSV       -8.1058  0.72013
STATS LOCAL VITERBI   -7.7231  0.72013
STATS LOCAL FORWARD   -3.7699  0.72013
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63845  1.05232  1.46071  1.49377
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   0.15719  3.27118  2.73043  3.16274      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   3.30705  0.14631  3.36166  2.73626      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   0.15719  3.27118  2.73043  3.16274      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.86982  3.47591  0.13017  3.36931     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   3.30705  0.14631  3.36166  2.73626     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.97980  2.52563  3.03204  0.19727     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.97980  2.52563  3.03204  0.19727     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   0.15719  3.27118  2.73043  3.16274     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.97980  2.52563  3.03204  0.19727     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   3.30705  0.14631  3.36166  2.73626     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   3.30705  0.14631  3.36166  2.73626     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.86982  3.47591  0.13017  3.36931     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fortythreec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:13:42 2012
NSEQ  4
EFFN  3.152344
CKSUM 2383999962
STATS LOCAL MSV       -7.9404  0.71933
STATS LOCAL VITERBI   -7.6097  0.71933
STATS LOCAL FORWARD   -3.9794  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92616  1.32798  1.04338  1.43961
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  0.00000        *
      1   3.03232  2.55926  3.08260  0.18802      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      2   2.90797  3.53050  0.12362  3.42932      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      3   3.36834  0.13821  3.42049  2.78160      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      4   2.90797  3.53050  0.12362  3.42932      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      5   3.36834  0.13821  3.42049  2.78160      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      6   3.36834  0.13821  3.42049  2.78160      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      7   3.36834  0.13821  3.42049  2.78160      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      8   2.90797  3.53050  0.12362  3.42932      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      9   2.90797  3.53050  0.12362  3.42932      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     10   2.90797  3.53050  0.12362  3.42932     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     11   2.90797  3.53050  0.12362  3.42932     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     12   3.36834  0.13821  3.42049  2.78160     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     13   3.03232  2.55926  3.08260  0.18802     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     14   3.03232  2.55926  3.08260  0.18802     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     15   2.90797  3.53050  0.12362  3.42932     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     16   3.03232  2.55926  3.08260  0.18802     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     17   3.36834  0.13821  3.42049  2.78160     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     18   3.36834  0.13821  3.42049  2.78160     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     19   2.90797  3.53050  0.12362  3.42932     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     20   0.14954  3.32415  2.76532  3.22056     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     21   2.90797  3.53050  0.12362  3.42932     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     22   2.90797  3.53050  0.12362  3.42932     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     23   2.90797  3.53050  0.12362  3.42932     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     24   3.36834  0.13821  3.42049  2.78160     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     25   0.14954  3.32415  2.76532  3.22056     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     26   3.03232  2.55926  3.08260  0.18802     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     27   2.90797  3.53050  0.12362  3.42932     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     28   3.03232  2.55926  3.08260  0.18802     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     29   3.36834  0.13821  3.42049  2.78160     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     30   3.03232  2.55926  3.08260  0.18802     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     31   2.90797  3.53050  0.12362  3.42932     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     32   2.90797  3.53050  0.12362  3.42932     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     33   3.36834  0.13821  3.42049  2.78160     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     34   3.03232  2.55926  3.08260  0.18802     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     35   2.90797  3.53050  0.12362  3.42932     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     36   0.14954  3.32415  2.76532  3.22056     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     37   2.90797  3.53050  0.12362  3.42932     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     38   3.36834  0.13821  3.42049  2.78160     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     39   2.90797  3.53050  0.12362  3.42932     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     40   3.03232  2.55926  3.08260  0.18802     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     41   3.36834  0.13821  3.42049  2.78160     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     42   3.03232  2.55926  3.08260  0.18802     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     43   0.14954  3.32415  2.76532  3.22056     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     44   0.14954  3.32415  2.76532  3.22056     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     45   3.03232  2.55926  3.08260  0.18802     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01922  3.96126        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fortythreed_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:13:51 2012
NSEQ  4
EFFN  3.128906
CKSUM 3164554758
STATS LOCAL MSV       -8.3104  0.71931
STATS LOCAL VITERBI   -7.6805  0.71931
STATS LOCAL FORWARD   -3.6350  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.06183  1.00496  1.20814  1.57038
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  0.00000        *
      1   3.02437  2.55419  3.07496  0.18939      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
      2   2.90228  3.52232  0.12458  3.42031      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
      3   3.35912  0.13939  3.41165  2.77481      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
      4   2.90228  3.52232  0.12458  3.42031      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
      5   3.35912  0.13939  3.41165  2.77481      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
      6   3.35912  0.13939  3.41165  2.77481      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
      7   3.35912  0.13939  3.41165  2.77481      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
      8   2.90228  3.52232  0.12458  3.42031      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
      9   3.35912  0.13939  3.41165  2.77481      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     10   2.90228  3.52232  0.12458  3.42031     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     11   2.90228  3.52232  0.12458  3.42031     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     12   3.35912  0.13939  3.41165  2.77481     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     13   3.02437  2.55419  3.07496  0.18939     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     14   3.02437  2.55419  3.07496  0.18939     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     15   2.90228  3.52232  0.12458  3.42031     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     16   3.02437  2.55419  3.07496  0.18939     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     17   3.35912  0.13939  3.41165  2.77481     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     18   3.35912  0.13939  3.41165  2.77481     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     19   0.15066  3.31617  2.76009  3.21184     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     20   0.15066  3.31617  2.76009  3.21184     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     21   2.90228  3.52232  0.12458  3.42031     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     22   2.90228  3.52232  0.12458  3.42031     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     23   2.90228  3.52232  0.12458  3.42031     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     24   3.35912  0.13939  3.41165  2.77481     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     25   0.15066  3.31617  2.76009  3.21184     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     26   3.02437  2.55419  3.07496  0.18939     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     27   2.90228  3.52232  0.12458  3.42031     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     28   3.35912  0.13939  3.41165  2.77481     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     29   3.35912  0.13939  3.41165  2.77481     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     30   3.02437  2.55419  3.07496  0.18939     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     31   3.02437  2.55419  3.07496  0.18939     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     32   3.35912  0.13939  3.41165  2.77481     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     33   3.35912  0.13939  3.41165  2.77481     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     34   3.02437  2.55419  3.07496  0.18939     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     35   2.90228  3.52232  0.12458  3.42031     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     36   0.15066  3.31617  2.76009  3.21184     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     37   2.90228  3.52232  0.12458  3.42031     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     38   3.35912  0.13939  3.41165  2.77481     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     39   2.90228  3.52232  0.12458  3.42031     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     40   3.02437  2.55419  3.07496  0.18939     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     41   3.35912  0.13939  3.41165  2.77481     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     42   3.35912  0.13939  3.41165  2.77481     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     43   3.35912  0.13939  3.41165  2.77481     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     44   3.35912  0.13939  3.41165  2.77481     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     45   2.90228  3.52232  0.12458  3.42031     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01931  3.95679        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fortythreee_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:14:00 2012
NSEQ  2
EFFN  2.000000
CKSUM 4293616081
STATS LOCAL MSV       -7.4799  0.72798
STATS LOCAL VITERBI   -8.1984  0.72798
STATS LOCAL FORWARD   -3.3468  0.72798
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.83129  1.23142  1.27214  1.31795
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.57915  2.25909  2.64442  0.28946     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fortythreef_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:14:09 2012
NSEQ  2
EFFN  2.000000
CKSUM 763339787
STATS LOCAL MSV       -7.5094  0.72740
STATS LOCAL VITERBI   -8.2548  0.72740
STATS LOCAL FORWARD   -2.9788  0.72740
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.84146  1.01995  1.27767  1.59892
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.57915  2.25909  2.64442  0.28946     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.81865  0.23582  2.88868  2.35662     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.81865  0.23582  2.88868  2.35662     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fortythreeg_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:14:18 2012
NSEQ  2
EFFN  2.000000
CKSUM 908133251
STATS LOCAL MSV       -7.6472  0.72756
STATS LOCAL VITERBI   -8.1033  0.72756
STATS LOCAL FORWARD   -2.9704  0.72756
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.67672  1.01892  1.38834  1.59682
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   0.23862  2.84929  2.43386  2.70756     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.57915  2.25909  2.64442  0.28946     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.81865  0.23582  2.88868  2.35662     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.81865  0.23582  2.88868  2.35662     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fortytwo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:13:18 2012
NSEQ  4
EFFN  3.246094
CKSUM 3050631641
STATS LOCAL MSV       -7.9920  0.71931
STATS LOCAL VITERBI   -7.7116  0.71931
STATS LOCAL FORWARD   -3.9001  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.54804  1.53365  1.19335  1.31533
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  0.00000        *
      1   2.93012  3.56249  0.11996  3.46456      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      2   3.40447  0.13368  3.45513  2.80810      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      3   0.14522  3.35543  2.78576  3.25475      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      4   3.40447  0.13368  3.45513  2.80810      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      5   3.06361  2.57923  3.11272  0.18276      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      6   3.06361  2.57923  3.11272  0.18276      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      7   3.40447  0.13368  3.45513  2.80810      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      8   3.06361  2.57923  3.11272  0.18276      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      9   3.06361  2.57923  3.11272  0.18276      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     10   2.93012  3.56249  0.11996  3.46456     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     11   2.93012  3.56249  0.11996  3.46456     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     12   3.06361  2.57923  3.11272  0.18276     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     13   0.14522  3.35543  2.78576  3.25475     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     14   3.06361  2.57923  3.11272  0.18276     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     15   3.06361  2.57923  3.11272  0.18276     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     16   3.40447  0.13368  3.45513  2.80810     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     17   3.40447  0.13368  3.45513  2.80810     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     18   2.93012  3.56249  0.11996  3.46456     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     19   0.14522  3.35543  2.78576  3.25475     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     20   2.93012  3.56249  0.11996  3.46456     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     21   2.93012  3.56249  0.11996  3.46456     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     22   0.14522  3.35543  2.78576  3.25475     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     23   2.93012  3.56249  0.11996  3.46456     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     24   3.06361  2.57923  3.11272  0.18276     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     25   0.14522  3.35543  2.78576  3.25475     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     26   3.40447  0.13368  3.45513  2.80810     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     27   0.14522  3.35543  2.78576  3.25475     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     28   3.40447  0.13368  3.45513  2.80810     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     29   0.14522  3.35543  2.78576  3.25475     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     30   3.06361  2.57923  3.11272  0.18276     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     31   2.93012  3.56249  0.11996  3.46456     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     32   3.40447  0.13368  3.45513  2.80810     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     33   3.06361  2.57923  3.11272  0.18276     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     34   3.06361  2.57923  3.11272  0.18276     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     35   2.93012  3.56249  0.11996  3.46456     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     36   0.14522  3.35543  2.78576  3.25475     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     37   2.93012  3.56249  0.11996  3.46456     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     38   2.93012  3.56249  0.11996  3.46456     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     39   2.93012  3.56249  0.11996  3.46456     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     40   3.06361  2.57923  3.11272  0.18276     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     41   3.40447  0.13368  3.45513  2.80810     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     42   0.14522  3.35543  2.78576  3.25475     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     43   2.93012  3.56249  0.11996  3.46456     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     44   3.06361  2.57923  3.11272  0.18276     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     45   2.93012  3.56249  0.11996  3.46456     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01888  3.97895        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_foura_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:55:55 2012
NSEQ  84
EFFN  3.847778
CKSUM 4048195829
STATS LOCAL MSV       -7.0232  0.71933
STATS LOCAL VITERBI   -7.5679  0.71933
STATS LOCAL FORWARD   -3.6342  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.83579  1.09209  1.08959  1.77996
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  0.00000        *
      1   3.05237  3.74189  0.10160  3.66308      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
      2   3.60983  0.11097  3.65148  2.95601      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
      3   3.60983  0.11097  3.65148  2.95601      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
      4   3.60983  0.11097  3.65148  2.95601      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
      5   0.65354  2.63334  1.12312  2.49258      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
      6   0.12310  3.53457  2.90140  3.45121      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
      7   0.14875  3.43421  2.64957  3.34423      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
      8   0.99864  2.61882  0.74515  2.47612      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
      9   3.60983  0.11097  3.65148  2.95601      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     10   3.52435  0.12777  3.56920  2.77588     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     11   2.92049  1.95573  2.97625  0.28283     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     12   3.16088  2.47148  3.20649  0.18314     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     13   3.60983  0.11097  3.65148  2.95601     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     14   2.88034  3.67195  0.11561  3.58856     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     15   3.05237  3.74189  0.10160  3.66308     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     16   3.05237  3.74189  0.10160  3.66308     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     17   2.49739  0.93875  2.56828  0.79870     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     18   3.52522  0.12759  3.57003  2.77761     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     19   2.73085  3.60227  0.13036  3.51344     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     20   0.12310  3.53457  2.90140  3.45121     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     21   3.05237  3.74189  0.10160  3.66308     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     22   3.05237  3.74189  0.10160  3.66308     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     23   3.05237  3.74189  0.10160  3.66308     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     24   3.60983  0.11097  3.65148  2.95601     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     25   0.12310  3.53457  2.90140  3.45121     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     26   3.60983  0.11097  3.65148  2.95601     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     27   3.05237  3.74189  0.10160  3.66308     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     28   2.72644  1.58672  2.78931  0.40274     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     29   3.60983  0.11097  3.65148  2.95601     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     30   3.24719  2.69574  3.28917  0.15509     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     31   3.05237  3.74189  0.10160  3.66308     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     32   3.60983  0.11097  3.65148  2.95601     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     33   3.60983  0.11097  3.65148  2.95601     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     34   3.24719  2.69574  3.28917  0.15509     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     35   3.05237  3.74189  0.10160  3.66308     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     36   3.05237  3.74189  0.10160  3.66308     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     37   3.05237  3.74189  0.10160  3.66308     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     38   2.52147  1.09588  2.59121  0.67239     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     39   3.05237  3.74189  0.10160  3.66308     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     40   3.24719  2.69574  3.28917  0.15509     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     41   3.60983  0.11097  3.65148  2.95601     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     42   0.12310  3.53457  2.90140  3.45121     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     43   3.60983  0.11097  3.65148  2.95601     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     44   3.05237  3.74189  0.10160  3.66308     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
     45   3.40214  0.15437  3.45168  2.55037     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01696  4.08560        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fourb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:56:01 2012
NSEQ  72
EFFN  3.353027
CKSUM 2221390108
STATS LOCAL MSV       -8.2307  0.71933
STATS LOCAL VITERBI   -7.6868  0.71933
STATS LOCAL FORWARD   -3.6608  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.84517  1.20286  1.08278  1.59447
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  0.00000        *
      1   2.95426  3.59755  0.11609  3.50324      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
      2   3.44424  0.12889  3.49323  2.83710      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
      3   3.44424  0.12889  3.49323  2.83710      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
      4   3.30174  0.16053  3.35503  2.56941      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
      5   0.39178  2.77392  1.65838  2.64108      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
      6   0.14063  3.38993  2.80820  3.29251      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
      7   0.14063  3.38993  2.80820  3.29251      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
      8   2.95426  3.59755  0.11609  3.50324      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
      9   3.44424  0.12889  3.49323  2.83710      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     10   3.44424  0.12889  3.49323  2.83710     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     11   3.03572  2.44757  3.08564  0.19875     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     12   3.09838  2.60135  3.14616  0.17711     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     13   3.25955  0.17093  3.31416  2.49677     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     14   2.95426  3.59755  0.11609  3.50324     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     15   2.95426  3.59755  0.11609  3.50324     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     16   2.95426  3.59755  0.11609  3.50324     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     17   3.35136  0.14895  3.40309  2.65806     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     18   3.33783  0.15205  3.38998  2.63348     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     19   2.95426  3.59755  0.11609  3.50324     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     20   0.14063  3.38993  2.80820  3.29251     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     21   2.95426  3.59755  0.11609  3.50324     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     22   2.95426  3.59755  0.11609  3.50324     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     23   2.95426  3.59755  0.11609  3.50324     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     24   3.44424  0.12889  3.49323  2.83710     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     25   0.14063  3.38993  2.80820  3.29251     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     26   3.44424  0.12889  3.49323  2.83710     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     27   2.95426  3.59755  0.11609  3.50324     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     28   3.00267  2.37154  3.05383  0.21093     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     29   3.44424  0.12889  3.49323  2.83710     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     30   3.09838  2.60135  3.14616  0.17711     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     31   2.95426  3.59755  0.11609  3.50324     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     32   3.44424  0.12889  3.49323  2.83710     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     33   3.44424  0.12889  3.49323  2.83710     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     34   3.09838  2.60135  3.14616  0.17711     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     35   2.95426  3.59755  0.11609  3.50324     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     36   2.95426  3.59755  0.11609  3.50324     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     37   2.95426  3.59755  0.11609  3.50324     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     38   3.09838  2.60135  3.14616  0.17711     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     39   2.95426  3.59755  0.11609  3.50324     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     40   3.09838  2.60135  3.14616  0.17711     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     41   3.44424  0.12889  3.49323  2.83710     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     42   0.14063  3.38993  2.80820  3.29251     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     43   3.09838  2.60135  3.14616  0.17711     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     44   2.55487  3.39693  0.16062  3.29129     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
     45   2.69179  1.73920  2.75435  0.36683     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01851  3.99876        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fourteena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:58:34 2012
NSEQ  22
EFFN  3.279053
CKSUM 925715289
STATS LOCAL MSV       -8.1455  0.71932
STATS LOCAL VITERBI   -7.7758  0.71932
STATS LOCAL FORWARD   -3.6982  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.93052  1.08270  1.09008  1.71448
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  0.00000        *
      1   2.93769  3.57346  0.11874  3.47665      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
      2   3.41689  0.13216  3.46703  2.81717      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
      3   3.41689  0.13216  3.46703  2.81717      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
      4   3.41689  0.13216  3.46703  2.81717      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
      5   2.93769  3.57346  0.11874  3.47665      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
      6   0.14377  3.36619  2.79278  3.26653      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
      7   0.14377  3.36619  2.79278  3.26653      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
      8   2.93769  3.57346  0.11874  3.47665      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
      9   3.41689  0.13216  3.46703  2.81717      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     10   3.41689  0.13216  3.46703  2.81717     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     11   3.07443  2.58612  3.12313  0.18098     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     12   2.94214  2.27790  2.99548  0.22975     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     13   2.67926  0.40755  2.74840  1.59911     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     14   2.51627  0.56322  2.58799  1.29210     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     15   2.93769  3.57346  0.11874  3.47665     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     16   2.93769  3.57346  0.11874  3.47665     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     17   3.41689  0.13216  3.46703  2.81717     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     18   3.41689  0.13216  3.46703  2.81717     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     19   2.93769  3.57346  0.11874  3.47665     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     20   0.14377  3.36619  2.79278  3.26653     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     21   2.93769  3.57346  0.11874  3.47665     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     22   2.93769  3.57346  0.11874  3.47665     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     23   2.93769  3.57346  0.11874  3.47665     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     24   3.41689  0.13216  3.46703  2.81717     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     25   0.14377  3.36619  2.79278  3.26653     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     26   3.41689  0.13216  3.46703  2.81717     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     27   2.93769  3.57346  0.11874  3.47665     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     28   3.41689  0.13216  3.46703  2.81717     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     29   3.41689  0.13216  3.46703  2.81717     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     30   3.07443  2.58612  3.12313  0.18098     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     31   2.93769  3.57346  0.11874  3.47665     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     32   3.41689  0.13216  3.46703  2.81717     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     33   3.41689  0.13216  3.46703  2.81717     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     34   3.07443  2.58612  3.12313  0.18098     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     35   2.93769  3.57346  0.11874  3.47665     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     36   2.93769  3.57346  0.11874  3.47665     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     37   2.93769  3.57346  0.11874  3.47665     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     38   3.07443  2.58612  3.12313  0.18098     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     39   2.93769  3.57346  0.11874  3.47665     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     40   3.07443  2.58612  3.12313  0.18098     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     41   3.41689  0.13216  3.46703  2.81717     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     42   0.14377  3.36619  2.79278  3.26653     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     43   3.07443  2.58612  3.12313  0.18098     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     44   2.93769  3.57346  0.11874  3.47665     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     45   3.41689  0.13216  3.46703  2.81717     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01877  3.98510        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fourteenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:58:43 2012
NSEQ  70
EFFN  5.088501
CKSUM 3721269259
STATS LOCAL MSV       -6.9134  0.71932
STATS LOCAL VITERBI   -7.5879  0.71932
STATS LOCAL FORWARD   -3.9680  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.74852  1.17930  1.12647  1.63836
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  0.00000        *
      1   3.23147  4.00602  0.07995  3.95644      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
      2   3.91828  0.08456  3.94536  3.17332      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
      3   3.91828  0.08456  3.94536  3.17332      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
      4   3.91828  0.08456  3.94536  3.17332      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
      5   0.79959  2.79109  0.87053  2.65351      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
      6   0.09584  3.81176  3.08128  3.75595      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
      7   0.15518  3.59484  2.44690  3.51624      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
      8   3.23147  4.00602  0.07995  3.95644      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
      9   3.91828  0.08456  3.94536  3.17332      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     10   3.68591  0.13033  3.72518  2.61710     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     11   1.02535  2.25303  1.99463  0.91583     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     12   3.54765  2.88869  3.57783  0.11921     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     13   2.86796  1.36880  2.92992  0.45354     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     14   0.92182  2.35489  2.37750  0.88063     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     15   3.00728  3.52277  0.15387  2.75403     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     16   3.23147  4.00602  0.07995  3.95644     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     17   2.70343  0.91545  2.77157  0.75476     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     18   2.70302  0.91159  2.77119  0.75817     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     19   2.57166  3.76703  0.13292  3.69155     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     20   0.09584  3.81176  3.08128  3.75595     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     21   3.23147  4.00602  0.07995  3.95644     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     22   3.23147  4.00602  0.07995  3.95644     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     23   3.23147  4.00602  0.07995  3.95644     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     24   3.91828  0.08456  3.94536  3.17332     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     25   0.09584  3.81176  3.08128  3.75595     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     26   3.91828  0.08456  3.94536  3.17332     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     27   3.23147  4.00602  0.07995  3.95644     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     28   2.90699  1.44095  2.96753  0.41973     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     29   3.91828  0.08456  3.94536  3.17332     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     30   3.54765  2.88869  3.57783  0.11921     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     31   3.23147  4.00602  0.07995  3.95644     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     32   2.92260  0.28356  2.11528  2.62403     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     33   3.91828  0.08456  3.94536  3.17332     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     34   3.54765  2.88869  3.57783  0.11921     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     35   3.23147  4.00602  0.07995  3.95644     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     36   3.23147  4.00602  0.07995  3.95644     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     37   3.23147  4.00602  0.07995  3.95644     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     38   3.25886  2.10105  3.30452  0.21999     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     39   3.23147  4.00602  0.07995  3.95644     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     40   3.54765  2.88869  3.57783  0.11921     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     41   3.91828  0.08456  3.94536  3.17332     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     42   0.16564  3.56007  2.37153  3.47792     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     43   3.91828  0.08456  3.94536  3.17332     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     44   0.45840  2.95212  1.36221  2.82373     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
     45   2.48432  0.20130  3.26267  2.80243     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01401  4.27507        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_fourteenc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:58:51 2012
NSEQ  76
EFFN  3.576416
CKSUM 815551676
STATS LOCAL MSV       -7.3595  0.71933
STATS LOCAL VITERBI   -7.6264  0.71933
STATS LOCAL FORWARD   -3.7388  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.71585  1.10671  1.18523  1.69354
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  0.00000        *
      1   3.00112  3.66619  0.10893  3.57914      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
      2   3.52263  0.12002  3.56821  2.89372      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
      3   3.52263  0.12002  3.56821  2.89372      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
      4   3.33822  0.15991  3.39007  2.54371      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
      5   2.76693  0.29348  2.48446  2.22463      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
      6   0.13203  3.45816  2.85229  3.36731      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
      7   0.13203  3.45816  2.85229  3.36731      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
      8   2.79755  3.57585  0.12743  3.48359      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
      9   3.52263  0.12002  3.56821  2.89372      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     10   3.52263  0.12002  3.56821  2.89372     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     11   2.35672  2.47836  2.82474  0.27172     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     12   2.35672  2.47836  2.82474  0.27172     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     13   3.04627  0.24542  3.10719  2.07654     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     14   2.03581  2.24688  2.01567  0.46130     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     15   3.00112  3.66619  0.10893  3.57914     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     16   3.00112  3.66619  0.10893  3.57914     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     17   3.35009  0.15709  3.40153  2.56431     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     18   3.33595  0.16045  3.38788  2.53979     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     19   2.83488  3.59354  0.12369  3.50246     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     20   0.13203  3.45816  2.85229  3.36731     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     21   3.00112  3.66619  0.10893  3.57914     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     22   3.00112  3.66619  0.10893  3.57914     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     23   3.00112  3.66619  0.10893  3.57914     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     24   3.52263  0.12002  3.56821  2.89372     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     25   0.13203  3.45816  2.85229  3.36731     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     26   3.52263  0.12002  3.56821  2.89372     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     27   3.00112  3.66619  0.10893  3.57914     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     28   3.16795  2.64551  3.21304  0.16640     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     29   3.52263  0.12002  3.56821  2.89372     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     30   3.16795  2.64551  3.21304  0.16640     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     31   3.00112  3.66619  0.10893  3.57914     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     32   3.52263  0.12002  3.56821  2.89372     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     33   3.52263  0.12002  3.56821  2.89372     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     34   3.16795  2.64551  3.21304  0.16640     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     35   3.00112  3.66619  0.10893  3.57914     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     36   3.00112  3.66619  0.10893  3.57914     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     37   3.00112  3.66619  0.10893  3.57914     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     38   2.95253  2.14756  3.00617  0.24649     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     39   3.00112  3.66619  0.10893  3.57914     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     40   3.16795  2.64551  3.21304  0.16640     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     41   3.52263  0.12002  3.56821  2.89372     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     42   0.13203  3.45816  2.85229  3.36731     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     43   3.52263  0.12002  3.56821  2.89372     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     44   0.13203  3.45816  2.85229  3.36731     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
     45   0.22308  2.59280  2.65587  2.90222     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01777  4.03891        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_nine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:57:25 2012
NSEQ  19
EFFN  3.604248
CKSUM 3064978032
STATS LOCAL MSV       -7.4838  0.71932
STATS LOCAL VITERBI   -7.7664  0.71932
STATS LOCAL FORWARD   -4.0255  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.74205  1.14988  1.13928  1.67071
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  0.00000        *
      1   3.00664  3.67433  0.10811  3.58816      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
      2   3.53197  0.11901  3.57713  2.90043      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
      3   3.53197  0.11901  3.57713  2.90043      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
      4   3.10101  0.22787  3.16041  2.15106      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
      5   3.00664  3.67433  0.10811  3.58816      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
      6   0.13104  3.46632  2.85754  3.37625      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
      7   0.13104  3.46632  2.85754  3.37625      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
      8   0.57908  2.63204  1.25561  2.49191      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
      9   3.53197  0.11901  3.57713  2.90043      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     10   3.53197  0.11901  3.57713  2.90043     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     11   0.13104  3.46632  2.85754  3.37625     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     12   2.48868  1.14773  2.55863  0.64968     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     13   3.17633  2.65083  3.22110  0.16516     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     14   2.67716  0.44679  2.74640  1.48101     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     15   3.00664  3.67433  0.10811  3.58816     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     16   3.00664  3.67433  0.10811  3.58816     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     17   3.17633  2.65083  3.22110  0.16516     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     18   3.17633  2.65083  3.22110  0.16516     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     19   3.00664  3.67433  0.10811  3.58816     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     20   0.13104  3.46632  2.85754  3.37625     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     21   1.40422  2.73373  0.48649  2.59447     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     22   3.00664  3.67433  0.10811  3.58816     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     23   3.00664  3.67433  0.10811  3.58816     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     24   3.53197  0.11901  3.57713  2.90043     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     25   0.13104  3.46632  2.85754  3.37625     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     26   3.53197  0.11901  3.57713  2.90043     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     27   3.00664  3.67433  0.10811  3.58816     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     28   3.17633  2.65083  3.22110  0.16516     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     29   3.53197  0.11901  3.57713  2.90043     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     30   3.17633  2.65083  3.22110  0.16516     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     31   3.00664  3.67433  0.10811  3.58816     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     32   3.53197  0.11901  3.57713  2.90043     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     33   3.53197  0.11901  3.57713  2.90043     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     34   3.17633  2.65083  3.22110  0.16516     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     35   3.00664  3.67433  0.10811  3.58816     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     36   3.00664  3.67433  0.10811  3.58816     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     37   3.00664  3.67433  0.10811  3.58816     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     38   3.53197  0.11901  3.57713  2.90043     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     39   3.00664  3.67433  0.10811  3.58816     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     40   3.17633  2.65083  3.22110  0.16516     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     41   3.53197  0.11901  3.57713  2.90043     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     42   0.13104  3.46632  2.85754  3.37625     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     43   3.53197  0.11901  3.57713  2.90043     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     44   3.00664  3.67433  0.10811  3.58816     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
     45   3.53197  0.11901  3.57713  2.90043     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01769  4.04380        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_nineteena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:02:03 2012
NSEQ  28
EFFN  3.394043
CKSUM 1268754513
STATS LOCAL MSV       -7.3768  0.71932
STATS LOCAL VITERBI   -7.8823  0.71932
STATS LOCAL FORWARD   -3.6277  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.89704  1.12183  1.05905  1.72866
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  0.00000        *
      1   2.96321  3.61061  0.11469  3.51767      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
      2   3.45911  0.12715  3.50746  2.84789      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
      3   3.45911  0.12715  3.50746  2.84789      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
      4   3.45911  0.12715  3.50746  2.84789      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
      5   2.96321  3.61061  0.11469  3.51767      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
      6   0.13895  3.40284  2.81657  3.30665      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
      7   2.96321  3.61061  0.11469  3.51767      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
      8   2.96321  3.61061  0.11469  3.51767      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
      9   3.45911  0.12715  3.50746  2.84789      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     10   3.11146  2.60966  3.15874  0.17504     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     11   0.13895  3.40284  2.81657  3.30665     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     12   3.11146  2.60966  3.15874  0.17504     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     13   2.42392  1.02380  2.49546  0.75557     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     14   3.11146  2.60966  3.15874  0.17504     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     15   2.96321  3.61061  0.11469  3.51767     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     16   2.96321  3.61061  0.11469  3.51767     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     17   3.45911  0.12715  3.50746  2.84789     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     18   3.45911  0.12715  3.50746  2.84789     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     19   1.14671  2.58217  0.65511  2.43811     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     20   0.13895  3.40284  2.81657  3.30665     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     21   2.96321  3.61061  0.11469  3.51767     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     22   2.96321  3.61061  0.11469  3.51767     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     23   2.96321  3.61061  0.11469  3.51767     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     24   3.45911  0.12715  3.50746  2.84789     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     25   0.13895  3.40284  2.81657  3.30665     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     26   3.45911  0.12715  3.50746  2.84789     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     27   2.96321  3.61061  0.11469  3.51767     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     28   3.45911  0.12715  3.50746  2.84789     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     29   3.45911  0.12715  3.50746  2.84789     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     30   3.11146  2.60966  3.15874  0.17504     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     31   2.96321  3.61061  0.11469  3.51767     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     32   3.45911  0.12715  3.50746  2.84789     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     33   3.45911  0.12715  3.50746  2.84789     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     34   3.11146  2.60966  3.15874  0.17504     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     35   2.96321  3.61061  0.11469  3.51767     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     36   2.96321  3.61061  0.11469  3.51767     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     37   2.96321  3.61061  0.11469  3.51767     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     38   3.45911  0.12715  3.50746  2.84789     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     39   2.96321  3.61061  0.11469  3.51767     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     40   3.11146  2.60966  3.15874  0.17504     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     41   3.45911  0.12715  3.50746  2.84789     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     42   0.13895  3.40284  2.81657  3.30665     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     43   2.56629  1.46611  2.63304  0.47723     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     44   2.96321  3.61061  0.11469  3.51767     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
     45   3.45911  0.12715  3.50746  2.84789     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01837  4.00625        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_nineteenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:02:11 2012
NSEQ  23
EFFN  3.433716
CKSUM 1681062768
STATS LOCAL MSV       -7.2331  0.71933
STATS LOCAL VITERBI   -7.7346  0.71933
STATS LOCAL FORWARD   -3.7798  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81746  1.11882  1.08211  1.76016
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  0.00000        *
      1   2.97172  3.62305  0.11337  3.53141      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
      2   3.47328  0.12552  3.52102  2.85815      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
      3   3.47328  0.12552  3.52102  2.85815      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
      4   3.47328  0.12552  3.52102  2.85815      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
      5   2.43175  0.82289  2.50402  0.93853      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
      6   0.13737  3.41516  2.82454  3.32015      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
      7   0.13737  3.41516  2.82454  3.32015      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
      8   2.97172  3.62305  0.11337  3.53141      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
      9   3.47328  0.12552  3.52102  2.85815      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     10   3.47328  0.12552  3.52102  2.85815     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     11   2.97172  3.62305  0.11337  3.53141     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     12   3.12398  2.61761  3.17077  0.17308     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     13   3.07935  0.19490  2.81068  2.64608     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     14   0.13737  3.41516  2.82454  3.32015     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     15   2.97172  3.62305  0.11337  3.53141     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     16   2.97172  3.62305  0.11337  3.53141     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     17   2.54959  0.55101  2.62082  1.29912     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     18   2.56939  0.52704  2.64034  1.34043     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     19   2.97172  3.62305  0.11337  3.53141     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     20   0.13737  3.41516  2.82454  3.32015     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     21   2.97172  3.62305  0.11337  3.53141     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     22   2.97172  3.62305  0.11337  3.53141     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     23   2.97172  3.62305  0.11337  3.53141     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     24   3.47328  0.12552  3.52102  2.85815     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     25   0.13737  3.41516  2.82454  3.32015     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     26   3.47328  0.12552  3.52102  2.85815     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     27   2.97172  3.62305  0.11337  3.53141     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     28   3.47328  0.12552  3.52102  2.85815     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     29   3.12398  2.61761  3.17077  0.17308     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     30   3.12398  2.61761  3.17077  0.17308     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     31   2.97172  3.62305  0.11337  3.53141     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     32   3.47328  0.12552  3.52102  2.85815     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     33   3.47328  0.12552  3.52102  2.85815     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     34   3.12398  2.61761  3.17077  0.17308     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     35   2.97172  3.62305  0.11337  3.53141     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     36   2.97172  3.62305  0.11337  3.53141     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     37   2.97172  3.62305  0.11337  3.53141     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     38   3.12398  2.61761  3.17077  0.17308     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     39   2.97172  3.62305  0.11337  3.53141     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     40   3.12398  2.61761  3.17077  0.17308     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     41   3.47328  0.12552  3.52102  2.85815     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     42   0.13737  3.41516  2.82454  3.32015     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     43   3.47328  0.12552  3.52102  2.85815     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     44   2.97172  3.62305  0.11337  3.53141     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     45   3.47328  0.12552  3.52102  2.85815     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01824  4.01344        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_nineteenc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:02:26 2012
NSEQ  7
EFFN  3.052246
CKSUM 1936706614
STATS LOCAL MSV       -8.1766  0.71933
STATS LOCAL VITERBI   -7.8521  0.71933
STATS LOCAL FORWARD   -3.2521  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.93182  1.01394  1.09971  1.83657
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  0.00000        *
      1   2.88322  3.49501  0.12784  3.39028      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
      2   3.32843  0.14342  3.38220  2.75214      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
      3   3.32843  0.14342  3.38220  2.75214      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
      4   3.32843  0.14342  3.38220  2.75214      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
      5   3.32843  0.14342  3.38220  2.75214      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
      6   0.15447  3.28965  2.74264  3.18289      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
      7   0.15447  3.28965  2.74264  3.18289      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
      8   2.88322  3.49501  0.12784  3.39028      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
      9   3.32843  0.14342  3.38220  2.75214      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     10   3.32843  0.14342  3.38220  2.75214     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     11   2.99804  2.53734  3.04961  0.19400     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     12   2.99804  2.53734  3.04961  0.19400     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     13   3.32843  0.14342  3.38220  2.75214     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     14   2.88322  3.49501  0.12784  3.39028     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     15   2.88322  3.49501  0.12784  3.39028     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     16   2.88322  3.49501  0.12784  3.39028     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     17   3.32843  0.14342  3.38220  2.75214     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     18   3.32843  0.14342  3.38220  2.75214     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     19   2.88322  3.49501  0.12784  3.39028     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     20   0.15447  3.28965  2.74264  3.18289     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     21   2.88322  3.49501  0.12784  3.39028     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     22   2.88322  3.49501  0.12784  3.39028     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     23   2.88322  3.49501  0.12784  3.39028     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     24   3.32843  0.14342  3.38220  2.75214     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     25   0.15447  3.28965  2.74264  3.18289     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     26   3.32843  0.14342  3.38220  2.75214     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     27   2.88322  3.49501  0.12784  3.39028     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     28   3.32843  0.14342  3.38220  2.75214     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     29   2.99804  2.53734  3.04961  0.19400     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     30   2.99804  2.53734  3.04961  0.19400     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     31   2.88322  3.49501  0.12784  3.39028     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     32   3.32843  0.14342  3.38220  2.75214     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     33   3.32843  0.14342  3.38220  2.75214     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     34   2.99804  2.53734  3.04961  0.19400     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     35   2.88322  3.49501  0.12784  3.39028     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     36   2.88322  3.49501  0.12784  3.39028     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     37   2.88322  3.49501  0.12784  3.39028     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     38   3.32843  0.14342  3.38220  2.75214     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     39   2.88322  3.49501  0.12784  3.39028     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     40   2.99804  2.53734  3.04961  0.19400     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     41   3.32843  0.14342  3.38220  2.75214     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     42   0.15447  3.28965  2.74264  3.18289     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     43   3.32843  0.14342  3.38220  2.75214     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     44   2.88322  3.49501  0.12784  3.39028     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
     45   3.32843  0.14342  3.38220  2.75214     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01960  3.94202        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_nineteend_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:02:37 2012
NSEQ  856
EFFN  5.554413
CKSUM 733056095
STATS LOCAL MSV       -6.6456  0.71932
STATS LOCAL VITERBI   -7.5969  0.71932
STATS LOCAL FORWARD   -3.9880  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.74504  1.15587  1.11456  1.70091
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  0.00000        *
      1   3.23345  3.95902  0.09091  3.56135      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
      2   4.00514  0.07838  4.02816  3.23494      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
      3   3.96337  0.08642  3.98881  3.09507      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
      4   3.84642  0.10955  3.87859  2.78499      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
      5   1.61944  2.42984  0.45902  2.50057      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
      6   0.09745  3.86160  3.00225  3.81028      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
      7   0.29717  2.86598  2.35447  2.25176      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
      8   2.97800  3.78889  0.10313  3.71027      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
      9   4.00514  0.07838  4.02816  3.23494      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     10   3.95927  0.08721  3.98496  3.08242     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     11   0.47869  2.44590  2.14476  1.73351     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     12   3.53226  2.57566  3.56532  0.14344     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     13   3.17703  2.21298  3.20717  0.21264     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     14   0.48947  2.12807  2.31988  1.77374     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     15   3.23908  3.63645  0.08938  3.91407     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     16   3.28325  4.08014  0.07476  4.03840     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     17   2.61871  0.71582  2.56034  1.01879     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     18   2.79100  0.98435  2.85745  0.67818     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     19   2.88958  3.91627  0.10528  3.71275     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     20   0.10529  3.83285  2.89277  3.77822     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     21   3.13578  4.04625  0.08257  4.00081     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     22   3.28325  4.08014  0.07476  4.03840     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     23   3.14551  4.04868  0.08201  4.00351     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     24   4.00514  0.07838  4.02816  3.23494     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     25   0.10009  3.59942  3.10949  3.75993     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     26   3.91614  0.09562  3.94435  2.95832     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     27   3.25566  3.77958  0.08388  3.95951     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     28   2.83114  0.59636  2.89858  1.09321     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     29   4.00514  0.07838  4.02816  3.23494     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     30   3.27989  2.81282  3.53878  0.13550     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     31   3.28325  4.08014  0.07476  4.03840     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     32   4.00514  0.07838  4.02816  3.23494     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     33   3.92955  0.09299  3.95697  2.99526     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     34   3.60551  2.81966  3.63419  0.12014     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     35   3.14615  4.04883  0.08198  4.00369     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     36   3.28325  4.08014  0.07476  4.03840     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     37   3.28325  4.08014  0.07476  4.03840     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     38   3.12209  1.65978  3.17582  0.32297     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     39   3.28325  4.08014  0.07476  4.03840     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     40   3.63936  2.94947  3.66605  0.11005     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     41   3.91395  0.09096  3.78906  3.11522     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     42   0.11267  3.77567  2.89076  3.57194     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     43   3.71094  0.09575  3.91271  3.06052     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     44   0.69515  2.09592  1.51651  1.84157     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
     45   1.71415  0.62668  2.27327  1.70075     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01315  4.33787        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:55:14 2012
NSEQ  587
EFFN  3.891777
CKSUM 1697391222
STATS LOCAL MSV       -7.1697  0.71931
STATS LOCAL VITERBI   -7.5248  0.71931
STATS LOCAL FORWARD   -3.7808  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.71133  1.10198  1.09475  1.88033
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  0.00000        *
      1   3.06016  3.75344  0.10053  3.67589      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
      2   3.62320  0.10965  3.66422  2.96550      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
      3   3.56594  0.12071  3.60913  2.84114      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
      4   3.36563  0.16464  3.41655  2.47178      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
      5   2.81056  3.64966  0.12157  3.56477      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
      6   0.12179  3.54633  2.90895  3.46414      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
      7   0.17514  3.06396  2.62741  3.17743      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
      8   2.91815  3.69722  0.11173  3.61602      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
      9   3.56658  0.12058  3.60974  2.84245      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     10   3.62320  0.10965  3.66422  2.96550     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     11   0.20648  3.24919  2.25688  3.14477     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     12   2.93498  1.96420  2.99032  0.27928     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     13   2.57765  1.24737  2.64559  0.56947     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     14   0.12179  3.54633  2.90895  3.46414     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     15   3.06016  3.75344  0.10053  3.67589     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     16   3.06016  3.75344  0.10053  3.67589     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     17   2.85229  0.35474  2.91819  1.67717     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     18   3.17254  0.21846  3.23000  2.16467     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     19   2.62184  3.38064  0.15152  3.38409     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     20   0.12179  3.54633  2.90895  3.46414     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     21   2.92968  3.70206  0.11075  3.62122     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     22   3.06016  3.75344  0.10053  3.67589     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     23   3.06016  3.75344  0.10053  3.67589     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     24   3.62320  0.10965  3.66422  2.96550     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     25   0.12179  3.54633  2.90895  3.46414     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     26   3.62320  0.10965  3.66422  2.96550     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     27   3.06016  3.75344  0.10053  3.67589     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     28   2.85132  1.80401  2.90988  0.32419     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     29   3.62320  0.10965  3.66422  2.96550     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     30   3.25952  2.70356  3.30102  0.15341     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     31   3.06016  3.75344  0.10053  3.67589     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     32   3.62320  0.10965  3.66422  2.96550     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     33   3.51379  0.13127  3.55903  2.73696     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     34   3.25952  2.70356  3.30102  0.15341     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     35   3.06016  3.75344  0.10053  3.67589     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     36   3.06016  3.75344  0.10053  3.67589     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     37   3.06016  3.75344  0.10053  3.67589     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     38   3.13791  0.22977  3.19643  2.11195     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     39   3.06016  3.75344  0.10053  3.67589     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     40   3.25952  2.70356  3.30102  0.15341     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     41   3.62320  0.10965  3.66422  2.96550     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     42   0.15696  3.41095  2.57610  3.31922     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     43   3.27489  0.13187  3.50961  2.88566     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     44   1.30792  2.73853  0.52656  2.59939     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
     45   3.16945  0.21944  3.22700  2.15995     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01683  4.09297        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_sevena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:56:45 2012
NSEQ  310
EFFN  3.855133
CKSUM 3216610733
STATS LOCAL MSV       -7.0299  0.71931
STATS LOCAL VITERBI   -7.7698  0.71931
STATS LOCAL FORWARD   -3.9428  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.67405  1.19795  1.11767  1.69466
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  0.00000        *
      1   3.05368  3.74384  0.10142  3.66524      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
      2   3.61208  0.11075  3.65362  2.95761      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
      3   3.61208  0.11075  3.65362  2.95761      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
      4   2.59107  1.29979  2.65845  0.54057      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
      5   3.05368  3.74384  0.10142  3.66524      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
      6   0.12288  3.53654  2.90267  3.45338      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
      7   0.12288  3.53654  2.90267  3.45338      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
      8   2.98957  3.60522  0.12061  3.32062      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
      9   3.61208  0.11075  3.65362  2.95761      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     10   3.61208  0.11075  3.65362  2.95761     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     11   0.16647  3.30347  2.72562  2.97421     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     12   3.18560  2.52848  3.23014  0.17517     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     13   2.50599  0.79710  2.57733  0.93702     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     14   0.27114  2.82965  2.52499  2.31874     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     15   3.05368  3.74384  0.10142  3.66524     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     16   3.05368  3.74384  0.10142  3.66524     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     17   2.46692  1.31463  2.58990  0.55940     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     18   2.95659  2.02338  3.01095  0.26585     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     19   2.53330  3.49926  0.15422  3.40229     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     20   0.12288  3.53654  2.90267  3.45338     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     21   0.50829  2.72162  1.35743  2.58515     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     22   3.05368  3.74384  0.10142  3.66524     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     23   3.05368  3.74384  0.10142  3.66524     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     24   3.61208  0.11075  3.65362  2.95761     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     25   0.12288  3.53654  2.90267  3.45338     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     26   3.61208  0.11075  3.65362  2.95761     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     27   3.05368  3.74384  0.10142  3.66524     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     28   3.15074  2.44306  3.19681  0.18706     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     29   3.61208  0.11075  3.65362  2.95761     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     30   3.24926  2.69705  3.29116  0.15480     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     31   3.05368  3.74384  0.10142  3.66524     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     32   3.61208  0.11075  3.65362  2.95761     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     33   3.41158  0.15244  3.46077  2.56405     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     34   3.24926  2.69705  3.29116  0.15480     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     35   3.05368  3.74384  0.10142  3.66524     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     36   3.05368  3.74384  0.10142  3.66524     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     37   3.05368  3.74384  0.10142  3.66524     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     38   3.53725  0.12537  3.58159  2.79845     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     39   3.05368  3.74384  0.10142  3.66524     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     40   3.24926  2.69705  3.29116  0.15480     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     41   3.61208  0.11075  3.65362  2.95761     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     42   0.12288  3.53654  2.90267  3.45338     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     43   3.61208  0.11075  3.65362  2.95761     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     44   2.89872  3.68146  0.11388  3.59882     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
     45   3.55506  0.12180  3.59872  2.83466     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01693  4.08684        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_sevenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:56:54 2012
NSEQ  184
EFFN  4.096313
CKSUM 2897657156
STATS LOCAL MSV       -7.4526  0.71932
STATS LOCAL VITERBI   -7.5187  0.71932
STATS LOCAL FORWARD   -3.9319  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.73723  1.11401  1.12992  1.75624
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  0.00000        *
      1   3.09467  3.80465  0.09594  3.73279      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
      2   3.55672  0.12851  3.60023  2.73722      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
      3   3.53201  0.13366  3.57655  2.68978      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
      4   3.33147  0.18101  3.38384  2.34426      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
      5   2.02324  2.72720  0.29637  2.83260      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
      6   0.11611  3.59888  2.94269  3.52192      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
      7   0.21327  2.87621  2.62174  2.76401      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
      8   3.09467  3.80465  0.09594  3.73279      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
      9   3.62514  0.11488  3.66575  2.87711      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     10   3.68265  0.10401  3.72091  3.00757     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     11   0.11611  3.59888  2.94269  3.52192     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     12   3.06832  2.13915  3.11882  0.23378     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     13   3.04696  2.09498  3.09839  0.24296     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     14   0.13047  3.54101  2.78212  3.46007     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     15   3.09467  3.80465  0.09594  3.73279     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     16   3.09467  3.80465  0.09594  3.73279     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     17   3.31413  0.18568  3.36711  2.31667     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     18   2.65424  0.47357  2.66048  1.43988     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     19   2.77225  3.46439  0.13224  3.50459     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     20   0.11611  3.59888  2.94269  3.52192     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     21   2.73642  3.65689  0.12634  3.57310     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     22   3.09467  3.80465  0.09594  3.73279     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     23   3.09467  3.80465  0.09594  3.73279     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     24   3.33501  0.12429  3.57448  2.93312     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     25   0.11611  3.59888  2.94269  3.52192     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     26   3.61888  0.11609  3.65976  2.86371     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     27   3.09467  3.80465  0.09594  3.73279     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     28   3.06936  2.14133  3.11982  0.23334     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     29   3.68265  0.10401  3.72091  3.00757     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     30   3.31505  2.73883  3.35436  0.14608     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     31   3.09467  3.80465  0.09594  3.73279     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     32   3.51746  0.13675  3.56261  2.66251     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     33   3.55003  0.12990  3.59382  2.72424     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     34   3.31505  2.73883  3.35436  0.14608     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     35   3.09467  3.80465  0.09594  3.73279     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     36   3.09467  3.80465  0.09594  3.73279     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     37   3.09467  3.80465  0.09594  3.73279     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     38   3.38555  0.15427  3.27515  2.64099     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     39   2.94006  3.74674  0.10749  3.67066     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     40   3.31505  2.73883  3.35436  0.14608     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     41   2.84891  0.20155  2.98732  2.60085     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     42   1.72403  2.16146  2.48249  0.47327     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     43   3.56741  0.12633  3.61046  2.75818     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     44   0.41750  2.70260  1.70268  2.38509     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
     45   3.52354  0.13546  3.56843  2.67384     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01627  4.12654        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_seventeen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:01:38 2012
NSEQ  21
EFFN  3.242798
CKSUM 1804940685
STATS LOCAL MSV       -8.0506  0.71931
STATS LOCAL VITERBI   -7.8621  0.71931
STATS LOCAL FORWARD   -3.9865  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.54969  1.31844  1.19398  1.52729
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  0.00000        *
      1   2.92936  3.56139  0.12009  3.46334      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
      2   3.40322  0.13383  3.45393  2.80719      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
      3   3.40322  0.13383  3.45393  2.80719      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
      4   3.06252  2.57853  3.11167  0.18294      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
      5   2.92936  3.56139  0.12009  3.46334      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
      6   0.14537  3.35434  2.78506  3.25357      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
      7   0.14537  3.35434  2.78506  3.25357      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
      8   0.14537  3.35434  2.78506  3.25357      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
      9   3.40322  0.13383  3.45393  2.80719      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     10   3.40322  0.13383  3.45393  2.80719     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     11   0.14537  3.35434  2.78506  3.25357     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     12   3.06252  2.57853  3.11167  0.18294     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     13   3.06252  2.57853  3.11167  0.18294     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     14   0.14537  3.35434  2.78506  3.25357     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     15   2.92936  3.56139  0.12009  3.46334     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     16   2.92936  3.56139  0.12009  3.46334     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     17   3.06252  2.57853  3.11167  0.18294     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     18   3.06252  2.57853  3.11167  0.18294     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     19   2.92936  3.56139  0.12009  3.46334     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     20   0.14537  3.35434  2.78506  3.25357     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     21   2.92936  3.56139  0.12009  3.46334     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     22   2.92936  3.56139  0.12009  3.46334     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     23   2.92936  3.56139  0.12009  3.46334     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     24   3.40322  0.13383  3.45393  2.80719     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     25   0.14537  3.35434  2.78506  3.25357     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     26   3.40322  0.13383  3.45393  2.80719     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     27   2.92936  3.56139  0.12009  3.46334     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     28   2.59442  1.59732  2.65985  0.42631     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     29   3.40322  0.13383  3.45393  2.80719     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     30   3.06252  2.57853  3.11167  0.18294     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     31   2.92936  3.56139  0.12009  3.46334     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     32   3.40322  0.13383  3.45393  2.80719     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     33   3.40322  0.13383  3.45393  2.80719     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     34   3.06252  2.57853  3.11167  0.18294     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     35   2.92936  3.56139  0.12009  3.46334     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     36   2.92936  3.56139  0.12009  3.46334     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     37   2.92936  3.56139  0.12009  3.46334     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     38   3.06252  2.57853  3.11167  0.18294     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     39   2.92936  3.56139  0.12009  3.46334     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     40   3.06252  2.57853  3.11167  0.18294     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     41   3.40322  0.13383  3.45393  2.80719     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     42   0.14537  3.35434  2.78506  3.25357     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     43   3.40322  0.13383  3.45393  2.80719     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     44   0.14537  3.35434  2.78506  3.25357     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
     45   3.40322  0.13383  3.45393  2.80719     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01889  3.97833        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_six_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:56:35 2012
NSEQ  53
EFFN  3.768616
CKSUM 2228915480
STATS LOCAL MSV       -7.1018  0.71931
STATS LOCAL VITERBI   -7.4669  0.71931
STATS LOCAL FORWARD   -3.6610  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.73514  1.11339  1.10213  1.81389
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  0.00000        *
      1   3.03800  3.72062  0.10360  3.63948      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
      2   3.58526  0.11344  3.62802  2.93853      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
      3   3.58526  0.11344  3.62802  2.93853      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
      4   3.22322  0.19760  3.27897  2.28465      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
      5   2.45755  3.43624  0.16660  3.33445      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
      6   0.12555  3.51297  2.88754  3.42748      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
      7   0.12555  3.51297  2.88754  3.42748      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
      8   3.03800  3.72062  0.10360  3.63948      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
      9   3.58526  0.11344  3.62802  2.93853      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     10   3.58526  0.11344  3.62802  2.93853     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     11   0.61343  2.31223  2.08242  1.44883     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     12   3.05803  2.27604  3.10788  0.21612     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     13   2.92548  2.00153  2.98079  0.27381     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     14   0.12555  3.51297  2.88754  3.42748     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     15   3.03800  3.72062  0.10360  3.63948     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     16   2.94024  3.23793  0.13365  3.41110     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     17   3.58526  0.11344  3.62802  2.93853     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     18   3.23244  0.16906  2.94715  2.75527     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     19   2.11016  2.43820  0.51231  1.64843     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     20   0.12555  3.51297  2.88754  3.42748     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     21   3.03800  3.72062  0.10360  3.63948     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     22   3.03800  3.72062  0.10360  3.63948     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     23   3.03800  3.72062  0.10360  3.63948     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     24   3.58526  0.11344  3.62802  2.93853     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     25   0.12555  3.51297  2.88754  3.42748     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     26   3.58526  0.11344  3.62802  2.93853     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     27   3.03800  3.72062  0.10360  3.63948     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     28   3.22464  2.68145  3.26752  0.15822     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     29   3.58526  0.11344  3.62802  2.93853     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     30   3.22464  2.68145  3.26752  0.15822     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     31   3.03800  3.72062  0.10360  3.63948     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     32   3.58526  0.11344  3.62802  2.93853     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     33   1.52707  0.55184  2.39442  2.15661     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     34   3.22464  2.68145  3.26752  0.15822     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     35   3.03800  3.72062  0.10360  3.63948     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     36   3.03800  3.72062  0.10360  3.63948     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     37   3.03800  3.72062  0.10360  3.63948     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     38   3.58526  0.11344  3.62802  2.93853     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     39   3.03800  3.72062  0.10360  3.63948     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     40   3.22464  2.68145  3.26752  0.15822     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     41   3.58526  0.11344  3.62802  2.93853     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     42   0.12555  3.51297  2.88754  3.42748     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     43   3.58526  0.11344  3.62802  2.93853     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     44   2.33055  3.35882  0.18721  3.25152     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
     45   3.15566  0.21804  3.21353  2.17963     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01719  4.07220        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_sixteena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:00:03 2012
NSEQ  2
EFFN  2.000000
CKSUM 4271773268
STATS LOCAL MSV       -7.4881  0.72737
STATS LOCAL VITERBI   -8.2452  0.72737
STATS LOCAL FORWARD   -3.2511  0.72737
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.74640  1.19459  1.17033  1.54879
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.53331  3.02441  0.20344  2.88069     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_sixteenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:00:16 2012
NSEQ  2
EFFN  2.000000
CKSUM 3116648824
STATS LOCAL MSV       -7.5374  0.72780
STATS LOCAL VITERBI   -8.1699  0.72780
STATS LOCAL FORWARD   -3.2302  0.72780
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63616  1.14978  1.19874  1.67669
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   0.92825  2.28391  0.95698  2.13014      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.57915  2.25909  2.64442  0.28946     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.81865  0.23582  2.88868  2.35662     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_sixteenc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:00:32 2012
NSEQ  2
EFFN  2.000000
CKSUM 3328582486
STATS LOCAL MSV       -7.5913  0.72754
STATS LOCAL VITERBI   -8.2420  0.72754
STATS LOCAL FORWARD   -3.2668  0.72754
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.58895  1.23335  1.11811  1.72796
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.15554  1.00938  2.23102  0.88601     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.53331  3.02441  0.20344  2.88069     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_sixteend_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:00:44 2012
NSEQ  2
EFFN  2.000000
CKSUM 2690199688
STATS LOCAL MSV       -7.4512  0.72744
STATS LOCAL VITERBI   -8.1553  0.72744
STATS LOCAL FORWARD   -3.0217  0.72744
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.52139  1.23657  1.11708  1.80803
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.15554  1.00938  2.23102  0.88601     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.81865  0.23582  2.88868  2.35662     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_sixteene_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:00:52 2012
NSEQ  2
EFFN  2.000000
CKSUM 1246193707
STATS LOCAL MSV       -7.6594  0.72693
STATS LOCAL VITERBI   -8.3817  0.72693
STATS LOCAL FORWARD   -3.2424  0.72693
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.67229  1.06970  1.17261  1.83562
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   0.23862  2.84929  2.43386  2.70756      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.81865  0.23582  2.88868  2.35662     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.53331  3.02441  0.20344  2.88069     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_sixteenf_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:00:59 2012
NSEQ  4
EFFN  3.324219
CKSUM 2175191417
STATS LOCAL MSV       -8.1113  0.71931
STATS LOCAL VITERBI   -7.7973  0.71931
STATS LOCAL FORWARD   -4.0579  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81924  1.35994  1.13918  1.34288
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  0.00000        *
      1   2.94787  3.58826  0.11710  3.49298      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      2   3.43368  0.13014  3.48311  2.82941      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      3   3.43368  0.13014  3.48311  2.82941      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      4   3.43368  0.13014  3.48311  2.82941      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      5   2.94787  3.58826  0.11710  3.49298      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      6   0.14183  3.38076  2.80224  3.28247      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      7   0.14183  3.38076  2.80224  3.28247      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      8   2.94787  3.58826  0.11710  3.49298      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      9   3.43368  0.13014  3.48311  2.82941      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     10   3.43368  0.13014  3.48311  2.82941     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     11   3.08911  2.59546  3.13724  0.17860     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     12   3.08911  2.59546  3.13724  0.17860     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     13   3.08911  2.59546  3.13724  0.17860     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     14   2.40564  0.95744  2.47775  0.81648     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     15   2.94787  3.58826  0.11710  3.49298     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     16   2.94787  3.58826  0.11710  3.49298     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     17   3.08911  2.59546  3.13724  0.17860     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     18   3.08911  2.59546  3.13724  0.17860     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     19   2.94787  3.58826  0.11710  3.49298     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     20   0.14183  3.38076  2.80224  3.28247     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     21   2.94787  3.58826  0.11710  3.49298     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     22   2.94787  3.58826  0.11710  3.49298     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     23   2.94787  3.58826  0.11710  3.49298     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     24   3.43368  0.13014  3.48311  2.82941     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     25   0.14183  3.38076  2.80224  3.28247     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     26   3.43368  0.13014  3.48311  2.82941     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     27   2.94787  3.58826  0.11710  3.49298     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     28   3.08911  2.59546  3.13724  0.17860     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     29   3.43368  0.13014  3.48311  2.82941     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     30   3.08911  2.59546  3.13724  0.17860     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     31   2.94787  3.58826  0.11710  3.49298     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     32   3.43368  0.13014  3.48311  2.82941     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     33   3.43368  0.13014  3.48311  2.82941     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     34   3.08911  2.59546  3.13724  0.17860     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     35   2.94787  3.58826  0.11710  3.49298     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     36   2.94787  3.58826  0.11710  3.49298     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     37   2.94787  3.58826  0.11710  3.49298     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     38   3.08911  2.59546  3.13724  0.17860     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     39   2.94787  3.58826  0.11710  3.49298     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     40   3.08911  2.59546  3.13724  0.17860     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     41   3.43368  0.13014  3.48311  2.82941     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     42   0.14183  3.38076  2.80224  3.28247     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     43   3.08911  2.59546  3.13724  0.17860     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     44   0.14183  3.38076  2.80224  3.28247     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     45   3.08911  2.59546  3.13724  0.17860     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01861  3.99346        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_sixteeng_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:01:05 2012
NSEQ  259
EFFN  5.876663
CKSUM 2080383098
STATS LOCAL MSV       -6.8494  0.71932
STATS LOCAL VITERBI   -7.5742  0.71932
STATS LOCAL FORWARD   -3.8484  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.87146  1.09869  1.04791  1.81939
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  0.00000        *
      1   3.25652  3.98041  0.09166  3.49372      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
      2   4.05846  0.07481  4.07906  3.27320      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
      3   4.05846  0.07481  4.07906  3.27320      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
      4   3.38016  0.16154  3.62148  2.42607      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
      5   2.10689  3.33236  0.21172  3.39658      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
      6   0.09953  3.84657  3.13639  3.50842      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
      7   0.58852  1.86574  1.96016  1.90225      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
      8   3.11584  4.08330  0.08205  4.04115      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
      9   3.98375  0.08968  4.00891  3.01571      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     10   4.05846  0.07481  4.07906  3.27320     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     11   1.04282  2.08610  1.36256  1.31913     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     12   3.24936  2.16890  3.03079  0.22487     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     13   2.50608  0.69859  2.71663  1.03556     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     14   0.58777  2.03139  1.77080  1.94430     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     15   3.31584  4.12580  0.07173  4.08866     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     16   3.31584  4.12580  0.07173  4.08866     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     17   3.43429  0.22420  3.48624  1.98066     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     18   2.47272  0.88431  2.68831  0.83322     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     19   2.85814  3.67483  0.12005  3.49358     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     20   0.08513  3.94327  3.17054  3.89984     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     21   3.31584  4.12580  0.07173  4.08866     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     22   3.31584  4.12580  0.07173  4.08866     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     23   3.31584  4.12580  0.07173  4.08866     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     24   4.05846  0.07481  4.07906  3.27320     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     25   0.10856  3.36623  3.11658  3.72778     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     26   4.05846  0.07481  4.07906  3.27320     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     27   3.31584  4.12580  0.07173  4.08866     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     28   2.82645  0.90413  2.89292  0.73299     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     29   4.05846  0.07481  4.07906  3.27320     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     30   3.69746  2.98870  3.72201  0.10461     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     31   3.31584  4.12580  0.07173  4.08866     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     32   4.05846  0.07481  4.07906  3.27320     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     33   3.99165  0.08810  4.01633  3.03977     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     34   3.69746  2.98870  3.72201  0.10461     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     35   3.31584  4.12580  0.07173  4.08866     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     36   3.31584  4.12580  0.07173  4.08866     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     37   3.31584  4.12580  0.07173  4.08866     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     38   2.82444  0.75591  2.89169  0.87805     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     39   3.11214  4.08241  0.08226  4.04015     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     40   3.69746  2.98870  3.72201  0.10461     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     41   4.01227  0.08399  4.03568  3.10564     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     42   0.15862  3.32760  2.98983  2.80508     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     43   3.41107  0.16215  3.37951  2.49351     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     44   2.11068  3.32108  0.21182  3.39258     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
     45   1.65342  0.56510  2.50870  1.83929     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01262  4.37911        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_ten_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:57:35 2012
NSEQ  5
EFFN  3.413086
CKSUM 238757557
STATS LOCAL MSV       -7.3971  0.71933
STATS LOCAL VITERBI   -7.6738  0.71933
STATS LOCAL FORWARD   -3.6720  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81443  1.10894  1.07074  1.80542
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  0.00000        *
      1   2.96731  3.61661  0.11405  3.52429      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      2   3.46593  0.12636  3.51399  2.85283      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      3   3.46593  0.12636  3.51399  2.85283      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      4   3.46593  0.12636  3.51399  2.85283      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      5   2.96731  3.61661  0.11405  3.52429      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      6   0.13819  3.40877  2.82041  3.31315      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      7   0.13819  3.40877  2.82041  3.31315      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      8   2.96731  3.61661  0.11405  3.52429      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      9   3.46593  0.12636  3.51399  2.85283      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     10   3.46593  0.12636  3.51399  2.85283     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     11   3.11748  2.61349  3.16453  0.17409     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     12   3.11748  2.61349  3.16453  0.17409     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     13   0.13819  3.40877  2.82041  3.31315     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     14   2.13860  2.15474  1.21038  0.75894     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     15   2.96731  3.61661  0.11405  3.52429     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     16   2.96731  3.61661  0.11405  3.52429     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     17   2.45133  0.72657  2.52364  1.04957     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     18   3.46593  0.12636  3.51399  2.85283     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     19   2.96731  3.61661  0.11405  3.52429     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     20   0.13819  3.40877  2.82041  3.31315     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     21   2.96731  3.61661  0.11405  3.52429     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     22   2.96731  3.61661  0.11405  3.52429     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     23   2.96731  3.61661  0.11405  3.52429     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     24   3.46593  0.12636  3.51399  2.85283     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     25   0.13819  3.40877  2.82041  3.31315     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     26   3.46593  0.12636  3.51399  2.85283     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     27   2.96731  3.61661  0.11405  3.52429     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     28   2.46209  1.18607  2.53225  0.63517     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     29   3.46593  0.12636  3.51399  2.85283     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     30   3.11748  2.61349  3.16453  0.17409     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     31   2.96731  3.61661  0.11405  3.52429     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     32   3.46593  0.12636  3.51399  2.85283     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     33   3.46593  0.12636  3.51399  2.85283     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     34   3.11748  2.61349  3.16453  0.17409     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     35   2.96731  3.61661  0.11405  3.52429     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     36   2.96731  3.61661  0.11405  3.52429     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     37   2.96731  3.61661  0.11405  3.52429     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     38   3.46593  0.12636  3.51399  2.85283     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     39   2.96731  3.61661  0.11405  3.52429     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     40   3.11748  2.61349  3.16453  0.17409     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     41   3.46593  0.12636  3.51399  2.85283     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     42   0.13819  3.40877  2.82041  3.31315     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     43   3.46593  0.12636  3.51399  2.85283     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     44   2.96731  3.61661  0.11405  3.52429     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     45   3.46593  0.12636  3.51399  2.85283     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01831  4.00971        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_thirteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:58:21 2012
NSEQ  14
EFFN  3.250488
CKSUM 2478405586
STATS LOCAL MSV       -8.0795  0.71932
STATS LOCAL VITERBI   -7.7238  0.71932
STATS LOCAL FORWARD   -3.7587  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.03469  1.11219  1.04046  1.67584
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  0.00000        *
      1   2.93114  3.56396  0.11980  3.46618      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      2   3.40613  0.13347  3.45673  2.80932      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      3   3.40613  0.13347  3.45673  2.80932      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      4   3.40613  0.13347  3.45673  2.80932      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      5   2.93114  3.56396  0.11980  3.46618      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      6   0.14502  3.35687  2.78670  3.25633      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      7   2.93114  3.56396  0.11980  3.46618      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      8   2.93114  3.56396  0.11980  3.46618      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      9   3.40613  0.13347  3.45673  2.80932      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     10   3.40613  0.13347  3.45673  2.80932     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     11   3.06506  2.58015  3.11411  0.18252     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     12   3.40613  0.13347  3.45673  2.80932     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     13   1.67950  0.50222  2.40121  2.13927     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     14   3.06506  2.58015  3.11411  0.18252     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     15   2.93114  3.56396  0.11980  3.46618     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     16   2.93114  3.56396  0.11980  3.46618     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     17   2.62030  1.64607  2.68493  0.40618     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     18   3.40613  0.13347  3.45673  2.80932     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     19   2.93114  3.56396  0.11980  3.46618     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     20   0.14502  3.35687  2.78670  3.25633     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     21   2.93114  3.56396  0.11980  3.46618     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     22   2.93114  3.56396  0.11980  3.46618     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     23   2.93114  3.56396  0.11980  3.46618     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     24   3.40613  0.13347  3.45673  2.80932     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     25   0.14502  3.35687  2.78670  3.25633     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     26   3.40613  0.13347  3.45673  2.80932     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     27   2.93114  3.56396  0.11980  3.46618     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     28   3.06506  2.58015  3.11411  0.18252     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     29   3.40613  0.13347  3.45673  2.80932     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     30   3.06506  2.58015  3.11411  0.18252     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     31   2.93114  3.56396  0.11980  3.46618     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     32   3.40613  0.13347  3.45673  2.80932     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     33   3.40613  0.13347  3.45673  2.80932     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     34   3.06506  2.58015  3.11411  0.18252     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     35   2.93114  3.56396  0.11980  3.46618     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     36   2.93114  3.56396  0.11980  3.46618     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     37   2.93114  3.56396  0.11980  3.46618     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     38   3.06506  2.58015  3.11411  0.18252     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     39   2.93114  3.56396  0.11980  3.46618     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     40   3.06506  2.58015  3.11411  0.18252     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     41   3.40613  0.13347  3.45673  2.80932     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     42   0.14502  3.35687  2.78670  3.25633     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     43   3.40613  0.13347  3.45673  2.80932     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     44   2.93114  3.56396  0.11980  3.46618     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     45   3.40613  0.13347  3.45673  2.80932     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01887  3.97977        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_thirty_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:08:56 2012
NSEQ  33
EFFN  3.452271
CKSUM 3012843748
STATS LOCAL MSV       -7.5469  0.71933
STATS LOCAL VITERBI   -7.9147  0.71933
STATS LOCAL FORWARD   -3.6482  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.70070  1.09199  1.06893  1.97677
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  0.00000        *
      1   3.47984  0.12477  3.52729  2.86289      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
      2   2.97564  3.62879  0.11277  3.53776      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
      3   3.47984  0.12477  3.52729  2.86289      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
      4   3.47984  0.12477  3.52729  2.86289      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
      5   3.47984  0.12477  3.52729  2.86289      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
      6   2.97564  3.62879  0.11277  3.53776      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
      7   0.13665  3.42087  2.82823  3.32641      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
      8   2.97564  3.62879  0.11277  3.53776      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
      9   2.97564  3.62879  0.11277  3.53776      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     10   2.97564  3.62879  0.11277  3.53776     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     11   0.13665  3.42087  2.82823  3.32641     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     12   2.42773  0.91647  2.49970  0.84461     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     13   3.47984  0.12477  3.52729  2.86289     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     14   1.95486  0.41962  2.53145  2.10723     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     15   2.11863  2.15518  1.09102  0.84852     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     16   3.47984  0.12477  3.52729  2.86289     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     17   3.47984  0.12477  3.52729  2.86289     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     18   3.47984  0.12477  3.52729  2.86289     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     19   2.52351  3.40230  0.16305  3.29746     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     20   0.13665  3.42087  2.82823  3.32641     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     21   2.97564  3.62879  0.11277  3.53776     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     22   2.97564  3.62879  0.11277  3.53776     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     23   2.97564  3.62879  0.11277  3.53776     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     24   3.47984  0.12477  3.52729  2.86289     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     25   0.13665  3.42087  2.82823  3.32641     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     26   3.47984  0.12477  3.52729  2.86289     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     27   2.97564  3.62879  0.11277  3.53776     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     28   3.47984  0.12477  3.52729  2.86289     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     29   3.47984  0.12477  3.52729  2.86289     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     30   3.12979  2.62130  3.17636  0.17218     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     31   2.97564  3.62879  0.11277  3.53776     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     32   3.47984  0.12477  3.52729  2.86289     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     33   3.47984  0.12477  3.52729  2.86289     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     34   3.12979  2.62130  3.17636  0.17218     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     35   2.97564  3.62879  0.11277  3.53776     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     36   2.97564  3.62879  0.11277  3.53776     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     37   2.97564  3.62879  0.11277  3.53776     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     38   3.47984  0.12477  3.52729  2.86289     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     39   2.97564  3.62879  0.11277  3.53776     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     40   3.12979  2.62130  3.17636  0.17218     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     41   2.37199  2.46336  2.81060  0.27261     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     42   0.13665  3.42087  2.82823  3.32641     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     43   2.97564  3.62879  0.11277  3.53776     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     44   0.13665  3.42087  2.82823  3.32641     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
     45   0.13665  3.42087  2.82823  3.32641     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01817  4.01679        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_thirtyfive_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:11:30 2012
NSEQ  3
EFFN  3.000000
CKSUM 526989836
STATS LOCAL MSV       -7.9616  0.72013
STATS LOCAL VITERBI   -7.8039  0.72013
STATS LOCAL FORWARD   -4.0636  0.72013
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63091  1.26577  1.25759  1.43595
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   0.15719  3.27118  2.73043  3.16274      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   0.15719  3.27118  2.73043  3.16274      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.97980  2.52563  3.03204  0.19727     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.97980  2.52563  3.03204  0.19727     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   3.30705  0.14631  3.36166  2.73626     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_thirtyfoura_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:11:05 2012
NSEQ  31
EFFN  3.576050
CKSUM 1110488480
STATS LOCAL MSV       -7.3906  0.71932
STATS LOCAL VITERBI   -7.7243  0.71932
STATS LOCAL FORWARD   -4.1047  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.73194  1.44969  1.07683  1.39536
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  0.00000        *
      1   3.00104  3.66608  0.10894  3.57903      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
      2   3.52251  0.12003  3.56809  2.89364      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
      3   0.41720  2.55354  2.39138  1.76141      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
      4   3.52251  0.12003  3.56809  2.89364      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
      5   3.00104  3.66608  0.10894  3.57903      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
      6   0.13204  3.45806  2.85223  3.36719      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
      7   3.00104  3.66608  0.10894  3.57903      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
      8   3.00104  3.66608  0.10894  3.57903      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
      9   3.52251  0.12003  3.56809  2.89364      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     10   3.52251  0.12003  3.56809  2.89364     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     11   0.13204  3.45806  2.85223  3.36719     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     12   3.16784  2.64544  3.21293  0.16642     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     13   3.16784  2.64544  3.21293  0.16642     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     14   0.13204  3.45806  2.85223  3.36719     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     15   3.00104  3.66608  0.10894  3.57903     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     16   3.00104  3.66608  0.10894  3.57903     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     17   3.04861  2.35479  3.09836  0.20759     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     18   3.52251  0.12003  3.56809  2.89364     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     19   2.53822  3.43935  0.15855  3.33746     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     20   0.13204  3.45806  2.85223  3.36719     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     21   3.00104  3.66608  0.10894  3.57903     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     22   1.82346  2.21809  2.09443  0.49992     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     23   3.00104  3.66608  0.10894  3.57903     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     24   3.52251  0.12003  3.56809  2.89364     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     25   0.13204  3.45806  2.85223  3.36719     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     26   3.28078  0.17413  3.33457  2.44665     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     27   3.00104  3.66608  0.10894  3.57903     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     28   3.16784  2.64544  3.21293  0.16642     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     29   3.52251  0.12003  3.56809  2.89364     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     30   3.16784  2.64544  3.21293  0.16642     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     31   3.00104  3.66608  0.10894  3.57903     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     32   3.04861  2.35479  3.09836  0.20759     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     33   3.16784  2.64544  3.21293  0.16642     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     34   3.16784  2.64544  3.21293  0.16642     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     35   3.00104  3.66608  0.10894  3.57903     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     36   3.00104  3.66608  0.10894  3.57903     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     37   3.00104  3.66608  0.10894  3.57903     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     38   3.28078  0.17413  3.33457  2.44665     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     39   3.00104  3.66608  0.10894  3.57903     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     40   3.16784  2.64544  3.21293  0.16642     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     41   3.52251  0.12003  3.56809  2.89364     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     42   0.13204  3.45806  2.85223  3.36719     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     43   3.16784  2.64544  3.21293  0.16642     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     44   3.00104  3.66608  0.10894  3.57903     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
     45   2.75448  1.75873  2.81555  0.35066     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01777  4.03884        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_thirtyfourb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:11:12 2012
NSEQ  2
EFFN  2.000000
CKSUM 3980991935
STATS LOCAL MSV       -7.5533  0.72716
STATS LOCAL VITERBI   -8.1522  0.72716
STATS LOCAL FORWARD   -3.3295  0.72716
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.59501  1.20164  1.16801  1.68520
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   0.23862  2.84929  2.43386  2.70756     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.81865  0.23582  2.88868  2.35662     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_thirtyfourc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:11:18 2012
NSEQ  2
EFFN  2.000000
CKSUM 2098883129
STATS LOCAL MSV       -7.5674  0.72732
STATS LOCAL VITERBI   -8.2900  0.72732
STATS LOCAL FORWARD   -3.4224  0.72732
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.58991  1.35237  1.11830  1.55782
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.53331  3.02441  0.20344  2.88069     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_thirtyone_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:09:07 2012
NSEQ  173
EFFN  3.861984
CKSUM 63343949
STATS LOCAL MSV       -7.1647  0.71933
STATS LOCAL VITERBI   -7.8521  0.71933
STATS LOCAL FORWARD   -3.4105  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.98184  1.01410  1.02688  1.95663
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  0.00000        *
      1   3.05490  3.74564  0.10125  3.66724      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
      2   3.61417  0.11054  3.65561  2.95909      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
      3   3.55107  0.12280  3.59487  2.82348      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
      4   3.51251  0.13063  3.55781  2.74676      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
      5   3.05490  3.74564  0.10125  3.66724      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
      6   0.12267  3.53838  2.90385  3.45540      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
      7   3.05490  3.74564  0.10125  3.66724      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
      8   2.65459  3.36410  0.16732  3.01286      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
      9   3.53248  0.12654  3.57701  2.78601      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     10   3.55272  0.12247  3.59646  2.82687     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     11   0.57727  2.28575  2.27808  1.45075     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     12   2.53138  1.12398  2.60080  0.65152     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     13   2.57887  1.26595  2.64667  0.55987     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     14   2.41793  0.66381  2.38111  1.19218     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     15   3.05490  3.74564  0.10125  3.66724     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     16   3.05490  3.74564  0.10125  3.66724     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     17   2.99017  0.28407  3.05277  1.89859     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     18   2.95520  0.29957  3.01868  1.84559     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     19   2.88765  3.67807  0.11477  3.59523     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     20   0.12267  3.53838  2.90385  3.45540     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     21   3.05490  3.74564  0.10125  3.66724     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     22   3.05490  3.74564  0.10125  3.66724     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     23   3.05490  3.74564  0.10125  3.66724     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     24   3.61417  0.11054  3.65561  2.95909     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     25   0.12267  3.53838  2.90385  3.45540     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     26   3.55229  0.12255  3.59605  2.82599     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     27   3.05490  3.74564  0.10125  3.66724     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     28   3.09504  0.24308  3.15479  2.05671     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     29   3.61417  0.11054  3.65561  2.95909     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     30   3.20860  2.58338  3.25216  0.16797     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     31   3.00222  3.63096  0.11692  3.37623     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     32   3.61417  0.11054  3.65561  2.95909     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     33   3.51186  0.13076  3.55719  2.74552     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     34   3.25118  2.69828  3.29301  0.15454     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     35   3.05490  3.74564  0.10125  3.66724     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     36   3.05490  3.74564  0.10125  3.66724     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     37   3.05490  3.74564  0.10125  3.66724     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     38   3.54985  0.12304  3.59370  2.82100     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     39   3.05490  3.74564  0.10125  3.66724     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     40   3.25118  2.69828  3.29301  0.15454     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     41   3.61417  0.11054  3.65561  2.95909     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     42   0.12267  3.53838  2.90385  3.45540     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     43   3.61417  0.11054  3.65561  2.95909     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     44   3.05490  3.74564  0.10125  3.66724     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
     45   3.61417  0.11054  3.65561  2.95909     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01692  4.08799        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_thirtyseven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:11:43 2012
NSEQ  2
EFFN  2.000000
CKSUM 52418213
STATS LOCAL MSV       -7.4325  0.72761
STATS LOCAL VITERBI   -8.1937  0.72761
STATS LOCAL FORWARD   -3.7303  0.72761
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.66301  1.34714  1.16496  1.43333
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   0.23862  2.84929  2.43386  2.70756     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.23862  2.84929  2.43386  2.70756     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.57915  2.25909  2.64442  0.28946     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.57915  2.25909  2.64442  0.28946     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.81865  0.23582  2.88868  2.35662     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_thirtythreea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:09:29 2012
NSEQ  18
EFFN  3.783691
CKSUM 550039999
STATS LOCAL MSV       -6.9143  0.71933
STATS LOCAL VITERBI   -7.6760  0.71933
STATS LOCAL FORWARD   -3.7559  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.04129  1.19714  1.03285  1.55075
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  0.00000        *
      1   3.04077  3.72472  0.10321  3.64403      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
      2   3.58999  0.11296  3.63254  2.94190      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
      3   3.58999  0.11296  3.63254  2.94190      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
      4   2.62908  1.41927  2.69499  0.48058      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
      5   3.04077  3.72472  0.10321  3.64403      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
      6   0.12508  3.51713  2.89021  3.43205      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
      7   3.04077  3.72472  0.10321  3.64403      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
      8   3.04077  3.72472  0.10321  3.64403      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
      9   3.58999  0.11296  3.63254  2.94190      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     10   3.58999  0.11296  3.63254  2.94190     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     11   3.22897  2.68419  3.27168  0.15761     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.18717  4.09162  1.87089  1.46634  0.26236  1.09861  0.40547
     12   2.37027  0.74634  2.44366  1.06246     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03951  3.94396  3.94396  1.46634  0.26236  0.19644  1.72402
     13   2.90813  1.96059  2.96416  0.28363     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     14   3.22897  2.68419  3.27168  0.15761     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     15   3.04077  3.72472  0.10321  3.64403     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     16   3.04077  3.72472  0.10321  3.64403     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     17   2.90813  1.96059  2.96416  0.28363     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     18   2.48587  0.87739  2.55718  0.85954     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     19   3.04077  3.72472  0.10321  3.64403     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     20   0.12508  3.51713  2.89021  3.43205     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     21   1.83922  3.03603  0.30309  2.90955     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     22   3.04077  3.72472  0.10321  3.64403     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     23   3.04077  3.72472  0.10321  3.64403     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     24   3.58999  0.11296  3.63254  2.94190     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     25   0.12508  3.51713  2.89021  3.43205     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     26   3.58999  0.11296  3.63254  2.94190     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     27   3.04077  3.72472  0.10321  3.64403     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     28   3.22897  2.68419  3.27168  0.15761     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     29   3.58999  0.11296  3.63254  2.94190     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     30   3.22897  2.68419  3.27168  0.15761     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     31   3.04077  3.72472  0.10321  3.64403     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     32   3.58999  0.11296  3.63254  2.94190     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     33   3.07424  0.24642  3.13451  2.05058     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     34   3.22897  2.68419  3.27168  0.15761     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     35   3.04077  3.72472  0.10321  3.64403     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     36   3.04077  3.72472  0.10321  3.64403     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     37   3.04077  3.72472  0.10321  3.64403     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     38   3.58999  0.11296  3.63254  2.94190     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     39   3.04077  3.72472  0.10321  3.64403     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     40   3.22897  2.68419  3.27168  0.15761     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     41   3.58999  0.11296  3.63254  2.94190     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     42   0.12508  3.51713  2.89021  3.43205     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     43   3.58999  0.11296  3.63254  2.94190     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     44   3.04077  3.72472  0.10321  3.64403     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
     45   3.14070  0.22357  3.19904  2.15167     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01714  4.07477        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_thirtythreeb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:09:37 2012
NSEQ  11
EFFN  3.112549
CKSUM 3927138524
STATS LOCAL MSV       -8.3070  0.71933
STATS LOCAL VITERBI   -7.8443  0.71933
STATS LOCAL FORWARD   -3.5924  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.85214  1.06036  1.04445  1.93184
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  0.00000        *
      1   2.89827  3.51656  0.12526  3.41398      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
      2   3.35264  0.14023  3.40543  2.77003      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
      3   3.35264  0.14023  3.40543  2.77003      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
      4   3.35264  0.14023  3.40543  2.77003      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
      5   2.89827  3.51656  0.12526  3.41398      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
      6   0.15146  3.31057  2.75641  3.20573      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
      7   2.89827  3.51656  0.12526  3.41398      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
      8   2.89827  3.51656  0.12526  3.41398      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
      9   3.35264  0.14023  3.40543  2.77003      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     10   3.35264  0.14023  3.40543  2.77003     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     11   0.43962  2.47168  2.31836  1.75538     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     12   3.35264  0.14023  3.40543  2.77003     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     13   3.01880  2.55062  3.06959  0.19035     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     14   0.15146  3.31057  2.75641  3.20573     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     15   2.89827  3.51656  0.12526  3.41398     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     16   2.89827  3.51656  0.12526  3.41398     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     17   3.01880  2.55062  3.06959  0.19035     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     18   3.35264  0.14023  3.40543  2.77003     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     19   2.89827  3.51656  0.12526  3.41398     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     20   0.15146  3.31057  2.75641  3.20573     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     21   2.89827  3.51656  0.12526  3.41398     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     22   2.89827  3.51656  0.12526  3.41398     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     23   2.89827  3.51656  0.12526  3.41398     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     24   3.35264  0.14023  3.40543  2.77003     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     25   0.15146  3.31057  2.75641  3.20573     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     26   3.35264  0.14023  3.40543  2.77003     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     27   2.89827  3.51656  0.12526  3.41398     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     28   3.35264  0.14023  3.40543  2.77003     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     29   3.35264  0.14023  3.40543  2.77003     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     30   3.01880  2.55062  3.06959  0.19035     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     31   2.89827  3.51656  0.12526  3.41398     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     32   3.35264  0.14023  3.40543  2.77003     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     33   3.35264  0.14023  3.40543  2.77003     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     34   3.01880  2.55062  3.06959  0.19035     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     35   2.89827  3.51656  0.12526  3.41398     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     36   2.89827  3.51656  0.12526  3.41398     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     37   2.89827  3.51656  0.12526  3.41398     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     38   3.35264  0.14023  3.40543  2.77003     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     39   2.89827  3.51656  0.12526  3.41398     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     40   3.01880  2.55062  3.06959  0.19035     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     41   3.35264  0.14023  3.40543  2.77003     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     42   0.15146  3.31057  2.75641  3.20573     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     43   3.35264  0.14023  3.40543  2.77003     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     44   2.89827  3.51656  0.12526  3.41398     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
     45   3.35264  0.14023  3.40543  2.77003     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01937  3.95365        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_thirtythreec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:10:01 2012
NSEQ  2
EFFN  2.000000
CKSUM 2397806016
STATS LOCAL MSV       -7.4839  0.72750
STATS LOCAL VITERBI   -8.2729  0.72750
STATS LOCAL FORWARD   -3.2715  0.72750
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.66442  1.29311  1.16721  1.49143
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   0.23862  2.84929  2.43386  2.70756     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.53331  3.02441  0.20344  2.88069     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_thirtythreed_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:10:10 2012
NSEQ  2
EFFN  2.000000
CKSUM 344474445
STATS LOCAL MSV       -7.3987  0.72853
STATS LOCAL VITERBI   -8.1953  0.72853
STATS LOCAL FORWARD   -3.3486  0.72853
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.58413  1.25576  1.21039  1.55149
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.15554  1.00938  2.23102  0.88601     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.15554  1.00938  2.23102  0.88601     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.81865  0.23582  2.88868  2.35662     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_thirtythreee_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:10:27 2012
NSEQ  2
EFFN  2.000000
CKSUM 3848995925
STATS LOCAL MSV       -7.4459  0.72796
STATS LOCAL VITERBI   -8.2472  0.72796
STATS LOCAL FORWARD   -3.2509  0.72796
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.56353  1.28022  1.16180  1.61092
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   0.23862  2.84929  2.43386  2.70756      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.53331  3.02441  0.20344  2.88069      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   1.01448  1.11006  1.95471  1.79419     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.81865  0.23582  2.88868  2.35662     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_thirtythreef_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:10:35 2012
NSEQ  2
EFFN  2.000000
CKSUM 2055483089
STATS LOCAL MSV       -7.5686  0.72740
STATS LOCAL VITERBI   -8.0498  0.72740
STATS LOCAL FORWARD   -3.3915  0.72740
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.52192  1.35165  1.16450  1.55678
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   0.23862  2.84929  2.43386  2.70756      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.23862  2.84929  2.43386  2.70756     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.81865  0.23582  2.88868  2.35662     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.53331  3.02441  0.20344  2.88069     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_thirtytwo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:09:18 2012
NSEQ  17
EFFN  3.357666
CKSUM 685826610
STATS LOCAL MSV       -8.2223  0.71932
STATS LOCAL VITERBI   -7.8316  0.71932
STATS LOCAL FORWARD   -4.1028  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.73227  1.24820  1.13451  1.53936
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  0.00000        *
      1   2.95528  3.59904  0.11593  3.50489      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
      2   3.44594  0.12869  3.49485  2.83833      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
      3   3.44594  0.12869  3.49485  2.83833      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
      4   3.44594  0.12869  3.49485  2.83833      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
      5   2.95528  3.59904  0.11593  3.50489      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
      6   0.14043  3.39140  2.80915  3.29412      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
      7   2.95528  3.59904  0.11593  3.50489      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
      8   2.95528  3.59904  0.11593  3.50489      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
      9   3.44594  0.12869  3.49485  2.83833      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     10   3.44594  0.12869  3.49485  2.83833     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     11   3.09986  2.60230  3.14759  0.17687     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     12   3.09986  2.60230  3.14759  0.17687     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     13   2.55050  1.44909  2.61765  0.48744     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     14   3.19210  0.18897  3.24878  2.38295     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     15   2.95528  3.59904  0.11593  3.50489     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     16   2.95528  3.59904  0.11593  3.50489     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     17   3.09986  2.60230  3.14759  0.17687     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     18   3.44594  0.12869  3.49485  2.83833     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     19   2.95528  3.59904  0.11593  3.50489     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     20   0.14043  3.39140  2.80915  3.29412     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     21   2.95528  3.59904  0.11593  3.50489     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     22   2.95528  3.59904  0.11593  3.50489     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     23   2.95528  3.59904  0.11593  3.50489     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     24   3.44594  0.12869  3.49485  2.83833     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     25   0.14043  3.39140  2.80915  3.29412     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     26   3.44594  0.12869  3.49485  2.83833     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     27   0.14043  3.39140  2.80915  3.29412     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     28   3.09986  2.60230  3.14759  0.17687     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     29   3.44594  0.12869  3.49485  2.83833     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     30   3.09986  2.60230  3.14759  0.17687     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     31   2.95528  3.59904  0.11593  3.50489     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     32   3.44594  0.12869  3.49485  2.83833     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     33   3.09986  2.60230  3.14759  0.17687     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     34   3.09986  2.60230  3.14759  0.17687     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     35   2.95528  3.59904  0.11593  3.50489     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     36   2.95528  3.59904  0.11593  3.50489     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     37   2.95528  3.59904  0.11593  3.50489     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     38   3.44594  0.12869  3.49485  2.83833     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     39   2.95528  3.59904  0.11593  3.50489     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     40   3.09986  2.60230  3.14759  0.17687     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     41   2.71645  1.78494  2.77818  0.35107     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     42   0.24390  3.06038  2.14653  2.94357     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     43   0.14043  3.39140  2.80915  3.29412     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     44   0.14043  3.39140  2.80915  3.29412     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
     45   3.44594  0.12869  3.49485  2.83833     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01849  3.99961        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:55:32 2012
NSEQ  13
EFFN  3.081787
CKSUM 3827031248
STATS LOCAL MSV       -8.2836  0.71932
STATS LOCAL VITERBI   -7.6501  0.71932
STATS LOCAL FORWARD   -3.8247  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82182  1.10900  1.09622  1.74728
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  0.00000        *
      1   2.89064  3.50563  0.12656  3.40196      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
      2   3.34036  0.14184  3.39364  2.76096      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
      3   3.34036  0.14184  3.39364  2.76096      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
      4   3.34036  0.14184  3.39364  2.76096      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
      5   2.89064  3.50563  0.12656  3.40196      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
      6   0.15298  3.29995  2.74942  3.19413      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
      7   0.15298  3.29995  2.74942  3.19413      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
      8   2.89064  3.50563  0.12656  3.40196      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
      9   3.34036  0.14184  3.39364  2.76096      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     10   3.34036  0.14184  3.39364  2.76096     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     11   3.00825  2.54387  3.05944  0.19219     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     12   3.34036  0.14184  3.39364  2.76096     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     13   3.00825  2.54387  3.05944  0.19219     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     14   0.15298  3.29995  2.74942  3.19413     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     15   2.89064  3.50563  0.12656  3.40196     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     16   2.89064  3.50563  0.12656  3.40196     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     17   3.34036  0.14184  3.39364  2.76096     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     18   3.00825  2.54387  3.05944  0.19219     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     19   2.89064  3.50563  0.12656  3.40196     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     20   0.15298  3.29995  2.74942  3.19413     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     21   2.89064  3.50563  0.12656  3.40196     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     22   2.89064  3.50563  0.12656  3.40196     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     23   2.89064  3.50563  0.12656  3.40196     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     24   3.34036  0.14184  3.39364  2.76096     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     25   0.15298  3.29995  2.74942  3.19413     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     26   3.34036  0.14184  3.39364  2.76096     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     27   2.89064  3.50563  0.12656  3.40196     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     28   3.00825  2.54387  3.05944  0.19219     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     29   3.34036  0.14184  3.39364  2.76096     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     30   3.00825  2.54387  3.05944  0.19219     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     31   2.89064  3.50563  0.12656  3.40196     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     32   3.34036  0.14184  3.39364  2.76096     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     33   3.34036  0.14184  3.39364  2.76096     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     34   3.00825  2.54387  3.05944  0.19219     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     35   2.89064  3.50563  0.12656  3.40196     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     36   2.89064  3.50563  0.12656  3.40196     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     37   2.89064  3.50563  0.12656  3.40196     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     38   3.34036  0.14184  3.39364  2.76096     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     39   2.89064  3.50563  0.12656  3.40196     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     40   3.00825  2.54387  3.05944  0.19219     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     41   3.34036  0.14184  3.39364  2.76096     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     42   0.15298  3.29995  2.74942  3.19413     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     43   3.34036  0.14184  3.39364  2.76096     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     44   2.89064  3.50563  0.12656  3.40196     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
     45   3.34036  0.14184  3.39364  2.76096     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01949  3.94774        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twelve_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:57:55 2012
NSEQ  23
EFFN  3.697632
CKSUM 3343583042
STATS LOCAL MSV       -7.2508  0.71933
STATS LOCAL VITERBI   -7.6026  0.71933
STATS LOCAL FORWARD   -3.9055  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.75713  1.13224  1.13965  1.68621
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  0.00000        *
      1   3.02472  3.70099  0.10549  3.61771      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
      2   3.56263  0.11577  3.60642  2.92238      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
      3   3.56263  0.11577  3.60642  2.92238      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
      4   3.56263  0.11577  3.60642  2.92238      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
      5   3.02472  3.70099  0.10549  3.61771      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
      6   0.12785  3.49313  2.87479  3.40569      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
      7   0.12785  3.49313  2.87479  3.40569      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
      8   3.02472  3.70099  0.10549  3.61771      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
      9   3.56263  0.11577  3.60642  2.92238      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     10   3.56263  0.11577  3.60642  2.92238     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     11   0.65686  2.30315  2.24844  1.28730     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     12   3.20403  2.66838  3.24772  0.16114     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     13   3.02224  0.26115  3.08388  1.99983     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     14   2.89152  0.31846  2.95642  1.80037     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     15   3.02472  3.70099  0.10549  3.61771     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     16   3.02472  3.70099  0.10549  3.61771     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     17   2.58153  1.35406  2.64872  0.51850     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     18   2.95974  2.10353  3.01346  0.25229     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     19   1.88853  3.05068  0.29074  2.92499     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     20   0.12785  3.49313  2.87479  3.40569     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     21   3.02472  3.70099  0.10549  3.61771     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     22   3.02472  3.70099  0.10549  3.61771     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     23   3.02472  3.70099  0.10549  3.61771     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     24   3.56263  0.11577  3.60642  2.92238     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     25   0.12785  3.49313  2.87479  3.40569     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     26   2.58153  1.35406  2.64872  0.51850     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     27   3.02472  3.70099  0.10549  3.61771     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     28   3.20403  2.66838  3.24772  0.16114     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     29   3.56263  0.11577  3.60642  2.92238     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     30   3.20403  2.66838  3.24772  0.16114     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     31   3.02472  3.70099  0.10549  3.61771     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     32   3.56263  0.11577  3.60642  2.92238     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     33   3.56263  0.11577  3.60642  2.92238     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     34   3.20403  2.66838  3.24772  0.16114     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     35   3.02472  3.70099  0.10549  3.61771     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     36   3.02472  3.70099  0.10549  3.61771     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     37   3.02472  3.70099  0.10549  3.61771     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     38   3.56263  0.11577  3.60642  2.92238     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     39   3.02472  3.70099  0.10549  3.61771     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     40   3.20403  2.66838  3.24772  0.16114     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     41   3.56263  0.11577  3.60642  2.92238     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     42   0.12785  3.49313  2.87479  3.40569     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     43   3.56263  0.11577  3.60642  2.92238     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     44   0.12785  3.49313  2.87479  3.40569     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
     45   3.56263  0.11577  3.60642  2.92238     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01740  4.06003        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentya_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:03:14 2012
NSEQ  6
EFFN  3.178711
CKSUM 3928551301
STATS LOCAL MSV       -8.3552  0.71933
STATS LOCAL VITERBI   -7.9466  0.71933
STATS LOCAL FORWARD   -3.4318  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92867  1.00410  1.04349  1.99465
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  0.00000        *
      1   2.91430  3.53962  0.12257  3.43936      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      2   3.37862  0.13690  3.43035  2.78916      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      3   3.37862  0.13690  3.43035  2.78916      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      4   3.37862  0.13690  3.43035  2.78916      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      5   2.37921  0.95205  2.45172  0.83176      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      6   0.14829  3.33304  2.77114  3.23028      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      7   2.91430  3.53962  0.12257  3.43936      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      8   2.91430  3.53962  0.12257  3.43936      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      9   3.37862  0.13690  3.43035  2.78916      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     10   3.37862  0.13690  3.43035  2.78916     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     11   2.91430  3.53962  0.12257  3.43936     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     12   3.04119  2.56493  3.09115  0.18651     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     13   3.37862  0.13690  3.43035  2.78916     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     14   0.14829  3.33304  2.77114  3.23028     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     15   2.91430  3.53962  0.12257  3.43936     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     16   2.91430  3.53962  0.12257  3.43936     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     17   2.79199  0.32979  2.85893  1.81835     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     18   3.37862  0.13690  3.43035  2.78916     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     19   2.91430  3.53962  0.12257  3.43936     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     20   0.14829  3.33304  2.77114  3.23028     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     21   2.91430  3.53962  0.12257  3.43936     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     22   2.91430  3.53962  0.12257  3.43936     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     23   2.91430  3.53962  0.12257  3.43936     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     24   3.37862  0.13690  3.43035  2.78916     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     25   0.14829  3.33304  2.77114  3.23028     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     26   3.37862  0.13690  3.43035  2.78916     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     27   2.91430  3.53962  0.12257  3.43936     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     28   3.37862  0.13690  3.43035  2.78916     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     29   3.37862  0.13690  3.43035  2.78916     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     30   3.04119  2.56493  3.09115  0.18651     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     31   2.91430  3.53962  0.12257  3.43936     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     32   3.37862  0.13690  3.43035  2.78916     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     33   3.37862  0.13690  3.43035  2.78916     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     34   3.04119  2.56493  3.09115  0.18651     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     35   2.91430  3.53962  0.12257  3.43936     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     36   2.91430  3.53962  0.12257  3.43936     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     37   2.91430  3.53962  0.12257  3.43936     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     38   3.37862  0.13690  3.43035  2.78916     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     39   2.91430  3.53962  0.12257  3.43936     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     40   3.04119  2.56493  3.09115  0.18651     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     41   3.37862  0.13690  3.43035  2.78916     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     42   0.14829  3.33304  2.77114  3.23028     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     43   3.37862  0.13690  3.43035  2.78916     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     44   2.91430  3.53962  0.12257  3.43936     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     45   3.37862  0.13690  3.43035  2.78916     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01913  3.96627        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentyb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:03:24 2012
NSEQ  331
EFFN  4.139015
CKSUM 3119287144
STATS LOCAL MSV       -6.8068  0.71933
STATS LOCAL VITERBI   -7.6332  0.71933
STATS LOCAL FORWARD   -3.8434  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.88004  1.11445  1.11094  1.66036
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  0.00000        *
      1   2.98484  3.77251  0.10347  3.69876      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
      2   3.58373  0.11709  3.47125  2.96333      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
      3   3.60558  0.11989  3.64702  2.81772      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
      4   3.59530  0.12193  3.63718  2.79664      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
      5   2.51204  3.44490  0.16604  3.21952      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
      6   0.11500  3.60943  2.94947  3.53352      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
      7   0.11500  3.60943  2.94947  3.53352      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
      8   2.97178  3.76747  0.10449  3.69331      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
      9   3.63724  0.11371  3.67733  2.88474      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     10   3.69453  0.10292  3.73224  3.01595     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     11   1.34835  2.18781  2.05143  0.69391     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     12   3.28125  2.61853  3.32212  0.15849     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     13   2.71505  1.44191  2.77923  0.45376     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     14   2.29898  0.84042  2.15999  1.04191     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     15   3.10155  3.81486  0.09505  3.74413     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     16   3.10155  3.81486  0.09505  3.74413     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     17   3.41770  0.16079  3.46689  2.47072     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     18   2.86277  0.19468  3.07992  2.60603     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     19   1.99349  3.21682  0.25020  3.09992     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     20   0.11500  3.60943  2.94947  3.53352     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     21   3.10155  3.81486  0.09505  3.74413     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     22   3.10155  3.81486  0.09505  3.74413     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     23   3.10155  3.81486  0.09505  3.74413     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     24   3.69453  0.10292  3.73224  3.01595     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     25   0.11500  3.60943  2.94947  3.53352     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     26   3.69453  0.10292  3.73224  3.01595     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     27   3.10155  3.81486  0.09505  3.74413     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     28   3.15346  2.30352  3.20031  0.20256     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     29   3.06185  0.27103  3.12281  1.92022     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     30   3.32628  2.74598  3.36515  0.14464     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     31   3.10155  3.81486  0.09505  3.74413     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     32   3.69453  0.10292  3.73224  3.01595     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     33   3.69453  0.10292  3.73224  3.01595     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     34   3.32628  2.74598  3.36515  0.14464     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     35   3.10155  3.81486  0.09505  3.74413     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     36   3.10155  3.81486  0.09505  3.74413     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     37   3.10155  3.81486  0.09505  3.74413     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     38   3.28884  2.63924  3.32935  0.15610     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     39   3.10155  3.81486  0.09505  3.74413     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     40   3.32628  2.74598  3.36515  0.14464     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     41   3.69453  0.10292  3.73224  3.01595     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     42   0.11500  3.60943  2.94947  3.53352     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     43   3.55874  0.12936  3.60218  2.72411     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     44   1.65203  2.17464  0.87123  1.28643     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
     45   3.62344  0.11638  3.66411  2.85511     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01616  4.13341        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentyeight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:08:23 2012
NSEQ  75
EFFN  3.941345
CKSUM 725606151
STATS LOCAL MSV       -7.0112  0.71932
STATS LOCAL VITERBI   -7.6002  0.71932
STATS LOCAL FORWARD   -3.6299  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.99178  1.05713  1.03677  1.82326
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  0.00000        *
      1   3.06877  3.76621  0.09936  3.69008      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
      2   3.63800  0.10822  3.67835  2.97600      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
      3   3.63800  0.10822  3.67835  2.97600      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
      4   3.63800  0.10822  3.67835  2.97600      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
      5   2.74031  3.44624  0.15224  3.10552      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
      6   1.96078  3.15215  0.26363  3.03173      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
      7   0.13630  3.49554  2.74789  3.41053      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
      8   3.06877  3.76621  0.09936  3.69008      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
      9   3.63800  0.10822  3.67835  2.97600      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     10   3.63800  0.10822  3.67835  2.97600     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     11   1.38932  2.16314  2.00609  0.69060     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.10050  4.11763  2.53411  1.46634  0.26236  1.09861  0.40547
     12   3.06519  2.40438  3.11421  0.20014     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03538  4.05250  4.05250  1.46634  0.26236  0.34394  1.23432
     13   2.10122  0.84967  1.59245  1.39955     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     14   1.70851  1.97438  2.39563  0.52950     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     15   3.06877  3.76621  0.09936  3.69008     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     16   2.76288  2.58563  0.20594  3.04372     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     17   3.63800  0.10822  3.67835  2.97600     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     18   3.63800  0.10822  3.67835  2.97600     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     19   3.06877  3.76621  0.09936  3.69008     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     20   0.12035  3.55938  2.91733  3.47849     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     21   2.97532  3.27524  0.12788  3.46721     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     22   3.06877  3.76621  0.09936  3.69008     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     23   3.06877  3.76621  0.09936  3.69008     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     24   3.63800  0.10822  3.67835  2.97600     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     25   0.12035  3.55938  2.91733  3.47849     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     26   3.63800  0.10822  3.67835  2.97600     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     27   3.06877  3.76621  0.09936  3.69008     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     28   2.95522  1.98156  3.00992  0.27341     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     29   3.63800  0.10822  3.67835  2.97600     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     30   3.27324  2.71227  3.31420  0.15156     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     31   3.06877  3.76621  0.09936  3.69008     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     32   3.63800  0.10822  3.67835  2.97600     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     33   3.26436  0.19316  3.31889  2.29033     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     34   3.27324  2.71227  3.31420  0.15156     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     35   3.06877  3.76621  0.09936  3.69008     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     36   3.06877  3.76621  0.09936  3.69008     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     37   3.06877  3.76621  0.09936  3.69008     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     38   2.71123  0.21164  3.12806  2.51972     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     39   3.06877  3.76621  0.09936  3.69008     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     40   3.27324  2.71227  3.31420  0.15156     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     41   3.63800  0.10822  3.67835  2.97600     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     42   0.12035  3.55938  2.91733  3.47849     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     43   3.63800  0.10822  3.67835  2.97600     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     44   2.08904  3.23944  0.23189  3.12420     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
     45   3.63800  0.10822  3.67835  2.97600     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01669  4.10121        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentyfive_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:07:40 2012
NSEQ  2
EFFN  2.000000
CKSUM 3506156002
STATS LOCAL MSV       -7.5008  0.72748
STATS LOCAL VITERBI   -8.1864  0.72748
STATS LOCAL FORWARD   -3.4958  0.72748
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.52125  1.29579  1.21643  1.55308
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.81865  0.23582  2.88868  2.35662     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentyfour_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:07:23 2012
NSEQ  54
EFFN  4.030884
CKSUM 1457287590
STATS LOCAL MSV       -7.1491  0.71932
STATS LOCAL VITERBI   -7.6747  0.71932
STATS LOCAL FORWARD   -3.4488  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.04535  1.11942  0.98371  1.77033
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  0.00000        *
      1   3.08392  3.78870  0.09735  3.71506      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
      2   3.45031  0.14947  3.49811  2.56596      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
      3   3.08392  3.78870  0.09735  3.71506      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
      4   3.66410  0.10573  3.70323  2.99446      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
      5   3.66410  0.10573  3.70323  2.99446      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
      6   3.66410  0.10573  3.70323  2.99446      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
      7   3.08392  3.78870  0.09735  3.71506      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
      8   0.13796  3.50238  2.71853  3.41818      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
      9   3.08392  3.78870  0.09735  3.71506      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     10   3.08392  3.78870  0.09735  3.71506     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     11   3.66410  0.10573  3.70323  2.99446     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     12   2.52879  0.85000  2.59963  0.87101     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     13   3.22583  2.53318  3.26898  0.17099     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     14   2.92148  0.32796  2.98592  1.74147     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     15   3.08392  3.78870  0.09735  3.71506     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     16   3.08392  3.78870  0.09735  3.71506     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     17   3.38134  0.16580  3.43180  2.44814     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     18   3.33523  0.17750  3.38738  2.37261     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     19   1.64990  2.96161  0.36060  2.83134     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     20   0.11785  3.58244  2.93213  3.50384     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     21   3.08392  3.78870  0.09735  3.71506     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     22   3.08392  3.78870  0.09735  3.71506     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     23   3.08392  3.78870  0.09735  3.71506     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     24   3.66410  0.10573  3.70323  2.99446     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     25   0.11785  3.58244  2.93213  3.50384     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     26   3.66410  0.10573  3.70323  2.99446     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     27   2.99000  3.28184  0.12599  3.48914     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     28   3.03317  2.09684  3.08495  0.24429     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     29   3.51507  0.13525  3.56027  2.68353     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     30   3.29760  2.72774  3.33760  0.14834     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     31   3.08392  3.78870  0.09735  3.71506     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     32   3.38134  0.16580  3.43180  2.44814     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     33   2.71137  1.47995  2.77533  0.44071     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     34   3.29760  2.72774  3.33760  0.14834     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     35   3.08392  3.78870  0.09735  3.71506     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     36   3.08392  3.78870  0.09735  3.71506     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     37   3.08392  3.78870  0.09735  3.71506     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     38   3.03328  0.27630  3.09490  1.91071     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     39   3.08392  3.78870  0.09735  3.71506     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     40   3.29760  2.72774  3.33760  0.14834     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     41   3.66410  0.10573  3.70323  2.99446     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     42   3.08392  3.78870  0.09735  3.71506     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     43   2.77698  0.33436  2.64739  1.88956     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     44   0.11785  3.58244  2.93213  3.50384     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
     45   2.61157  0.59203  2.68190  1.18763     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01645  4.11592        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentynine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:08:34 2012
NSEQ  75
EFFN  3.520203
CKSUM 4214802283
STATS LOCAL MSV       -7.3205  0.71933
STATS LOCAL VITERBI   -7.8616  0.71933
STATS LOCAL FORWARD   -3.4501  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.61407  1.13672  1.12900  1.85344
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  0.00000        *
      1   3.50349  0.12212  3.54991  2.87996      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
      2   3.50349  0.12212  3.54991  2.87996      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
      3   2.73573  3.53280  0.13493  3.43720      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
      4   0.13407  3.44147  2.84153  3.34899      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
      5   2.98975  3.64948  0.11062  3.56065      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
      6   2.98975  3.64948  0.11062  3.56065      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
      7   2.98975  3.64948  0.11062  3.56065      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
      8   0.13407  3.44147  2.84153  3.34899      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
      9   2.87305  0.31464  2.93828  1.82969      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     10   3.50349  0.12212  3.54991  2.87996     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     11   1.14532  0.98332  2.08943  1.69252     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     12   2.36639  2.27561  1.70310  0.47590     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     13   3.50349  0.12212  3.54991  2.87996     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     14   3.50349  0.12212  3.54991  2.87996     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     15   3.50349  0.12212  3.54991  2.87996     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     16   2.98975  3.64948  0.11062  3.56065     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     17   0.13407  3.44147  2.84153  3.34899     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     18   2.98975  3.64948  0.11062  3.56065     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     19   2.98975  3.64948  0.11062  3.56065     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     20   2.98975  3.64948  0.11062  3.56065     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     21   3.50349  0.12212  3.54991  2.87996     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     22   0.13407  3.44147  2.84153  3.34899     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     23   3.50349  0.12212  3.54991  2.87996     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     24   2.46147  3.38186  0.17088  3.27586     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     25   3.50349  0.12212  3.54991  2.87996     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     26   3.50349  0.12212  3.54991  2.87996     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     27   3.15082  2.63465  3.19658  0.16897     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     28   2.98975  3.64948  0.11062  3.56065     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     29   3.50349  0.12212  3.54991  2.87996     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     30   3.50349  0.12212  3.54991  2.87996     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     31   3.15082  2.63465  3.19658  0.16897     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     32   3.50349  0.12212  3.54991  2.87996     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     33   0.28595  2.82529  2.54517  2.19872     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     34   3.02876  2.33986  3.07919  0.21160     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     35   2.98975  3.64948  0.11062  3.56065     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     36   2.98975  3.64948  0.11062  3.56065     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     37   2.98975  3.64948  0.11062  3.56065     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     38   3.50349  0.12212  3.54991  2.87996     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     39   2.98975  3.64948  0.11062  3.56065     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     40   3.15082  2.63465  3.19658  0.16897     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     41   3.15082  2.63465  3.19658  0.16897     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     42   0.13407  3.44147  2.84153  3.34899     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     43   2.98975  3.64948  0.11062  3.56065     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     44   0.13407  3.44147  2.84153  3.34899     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
     45   0.13407  3.44147  2.84153  3.34899     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01795  4.02895        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentyone_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:03:41 2012
NSEQ  599
EFFN  5.927299
CKSUM 1282541197
STATS LOCAL MSV       -6.8074  0.71932
STATS LOCAL VITERBI   -7.4983  0.71932
STATS LOCAL FORWARD   -3.9068  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.84517  1.10322  1.09393  1.74124
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  0.00000        *
      1   3.11256  4.08891  0.08199  4.04723      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
      2   3.81774  0.11010  3.52105  2.94300      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
      3   3.98691  0.09021  4.01203  3.00368      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
      4   3.38589  0.15019  3.66582  2.52544      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
      5   2.03947  2.89434  0.32975  2.34900      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
      6   0.09766  3.90429  2.96151  3.85617      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
      7   0.33071  2.80869  1.87991  2.67802      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
      8   3.10925  4.03118  0.08877  3.79183      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
      9   3.78449  0.11940  3.58445  2.77939      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     10   3.72335  0.09223  3.96663  3.10079     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     11   0.84822  2.26890  2.03445  1.08576     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     12   2.81992  2.18962  3.09378  0.24450     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     13   2.99698  1.64338  2.86722  0.35685     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     14   1.40865  1.26890  2.10752  1.04172     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     15   3.16915  4.10190  0.07882  4.06186     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     16   3.14358  4.09614  0.08023  4.05537     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     17   2.79155  0.43147  2.79190  1.47923     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     18   2.39051  0.74458  2.65229  1.01338     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     19   2.56871  3.83022  0.13378  3.61632     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     20   0.09594  3.87393  3.14889  3.58261     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     21   3.11814  3.67838  0.09316  3.93998     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     22   3.32075  4.13261  0.07128  4.09614     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     23   3.27757  3.64613  0.08626  3.97203     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     24   4.06640  0.07430  4.08665  3.27894     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     25   0.08455  3.95086  3.17582  3.90811     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     26   3.77969  0.09699  3.80767  3.04909     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     27   3.05181  4.07394  0.08561  4.03033     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     28   3.28089  1.82051  3.32900  0.26836     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     29   4.06640  0.07430  4.08665  3.27894     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     30   3.51518  2.93205  3.11370  0.13635     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     31   3.25461  3.97089  0.09364  3.44412     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     32   3.91257  0.09557  3.67161  3.08517     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     33   3.93957  0.09981  3.96755  2.87147     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     34   3.70623  2.99468  3.73046  0.10381     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     35   3.32075  4.13261  0.07128  4.09614     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     36   3.27358  4.01580  0.08725  3.58801     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     37   3.32075  4.13261  0.07128  4.09614     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     38   3.26724  0.28921  3.32491  1.73127     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     39   3.17845  4.10395  0.07832  4.06416     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     40   3.67419  2.86107  3.70040  0.11349     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     41   4.02320  0.08293  4.04609  3.11914     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     42   0.11990  3.74285  2.95937  3.28474     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     43   3.55391  0.10863  3.86661  2.93008     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     44   0.86136  2.72729  0.84837  2.47808     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
     45   3.37898  0.16398  3.61810  2.40435     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01254  4.38543        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentysevena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:07:57 2012
NSEQ  16
EFFN  3.308594
CKSUM 3310407156
STATS LOCAL MSV       -8.2848  0.71933
STATS LOCAL VITERBI   -7.9184  0.71933
STATS LOCAL FORWARD   -3.7813  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.17979  1.20305  1.04053  1.45504
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  0.00000        *
      1   3.42790  0.13083  3.47758  2.82520      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
      2   2.94437  3.58317  0.11766  3.48736      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
      3   3.42790  0.13083  3.47758  2.82520      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
      4   3.08405  2.59224  3.13238  0.17941      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
      5   3.42790  0.13083  3.47758  2.82520      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
      6   2.94437  3.58317  0.11766  3.48736      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
      7   0.14249  3.37574  2.79899  3.27698      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
      8   2.94437  3.58317  0.11766  3.48736      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
      9   2.94437  3.58317  0.11766  3.48736      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     10   3.42790  0.13083  3.47758  2.82520     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     11   1.89641  2.30749  2.51977  0.40062     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     12   2.94437  3.58317  0.11766  3.48736     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     13   2.90666  2.18699  2.96140  0.24674     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     14   2.90666  2.18699  2.96140  0.24674     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     15   0.14249  3.37574  2.79899  3.27698     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     16   2.94437  3.58317  0.11766  3.48736     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     17   3.42790  0.13083  3.47758  2.82520     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     18   3.42790  0.13083  3.47758  2.82520     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     19   2.94437  3.58317  0.11766  3.48736     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     20   0.14249  3.37574  2.79899  3.27698     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     21   2.94437  3.58317  0.11766  3.48736     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     22   2.94437  3.58317  0.11766  3.48736     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     23   2.94437  3.58317  0.11766  3.48736     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     24   3.42790  0.13083  3.47758  2.82520     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     25   2.94437  3.58317  0.11766  3.48736     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     26   3.08405  2.59224  3.13238  0.17941     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     27   2.94437  3.58317  0.11766  3.48736     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     28   3.42790  0.13083  3.47758  2.82520     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     29   3.42790  0.13083  3.47758  2.82520     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     30   3.08405  2.59224  3.13238  0.17941     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     31   2.94437  3.58317  0.11766  3.48736     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     32   3.42790  0.13083  3.47758  2.82520     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     33   3.42790  0.13083  3.47758  2.82520     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     34   3.08405  2.59224  3.13238  0.17941     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     35   2.94437  3.58317  0.11766  3.48736     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     36   2.94437  3.58317  0.11766  3.48736     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     37   2.94437  3.58317  0.11766  3.48736     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     38   3.42790  0.13083  3.47758  2.82520     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     39   2.94437  3.58317  0.11766  3.48736     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     40   3.08405  2.59224  3.13238  0.17941     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     41   3.42790  0.13083  3.47758  2.82520     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     42   3.08405  2.59224  3.13238  0.17941     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     43   3.08405  2.59224  3.13238  0.17941     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     44   3.08405  2.59224  3.13238  0.17941     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
     45   2.96271  0.26173  3.02575  2.03961     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01866  3.99057        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentysevenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:08:03 2012
NSEQ  5
EFFN  3.071289
CKSUM 2888586029
STATS LOCAL MSV       -8.1248  0.71931
STATS LOCAL VITERBI   -7.8960  0.71931
STATS LOCAL FORWARD   -3.7218  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.54970  1.27953  1.04201  1.85294
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  0.00000        *
      1   3.33613  0.14240  3.38959  2.75784      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
      2   2.88802  3.50187  0.12701  3.39782      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
      3   3.33613  0.14240  3.38959  2.75784      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
      4   3.33613  0.14240  3.38959  2.75784      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
      5   3.33613  0.14240  3.38959  2.75784      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
      6   2.88802  3.50187  0.12701  3.39782      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
      7   0.15351  3.29630  2.74702  3.19015      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
      8   2.88802  3.50187  0.12701  3.39782      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
      9   2.88802  3.50187  0.12701  3.39782      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     10   0.15351  3.29630  2.74702  3.19015     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     11   3.00463  2.54156  3.05596  0.19283     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     12   2.88802  3.50187  0.12701  3.39782     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     13   3.33613  0.14240  3.38959  2.75784     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     14   0.15351  3.29630  2.74702  3.19015     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     15   0.15351  3.29630  2.74702  3.19015     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     16   2.88802  3.50187  0.12701  3.39782     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     17   3.33613  0.14240  3.38959  2.75784     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     18   3.33613  0.14240  3.38959  2.75784     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     19   2.88802  3.50187  0.12701  3.39782     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     20   0.15351  3.29630  2.74702  3.19015     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     21   2.88802  3.50187  0.12701  3.39782     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     22   2.88802  3.50187  0.12701  3.39782     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     23   2.88802  3.50187  0.12701  3.39782     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     24   3.33613  0.14240  3.38959  2.75784     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     25   0.15351  3.29630  2.74702  3.19015     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     26   3.33613  0.14240  3.38959  2.75784     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     27   2.88802  3.50187  0.12701  3.39782     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     28   3.33613  0.14240  3.38959  2.75784     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     29   3.33613  0.14240  3.38959  2.75784     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     30   3.00463  2.54156  3.05596  0.19283     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     31   2.88802  3.50187  0.12701  3.39782     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     32   3.33613  0.14240  3.38959  2.75784     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     33   0.15351  3.29630  2.74702  3.19015     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     34   3.00463  2.54156  3.05596  0.19283     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     35   2.88802  3.50187  0.12701  3.39782     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     36   2.88802  3.50187  0.12701  3.39782     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     37   2.88802  3.50187  0.12701  3.39782     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     38   3.00463  2.54156  3.05596  0.19283     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     39   2.88802  3.50187  0.12701  3.39782     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     40   3.00463  2.54156  3.05596  0.19283     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     41   0.15351  3.29630  2.74702  3.19015     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     42   0.15351  3.29630  2.74702  3.19015     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     43   3.00463  2.54156  3.05596  0.19283     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     44   2.88802  3.50187  0.12701  3.39782     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
     45   3.33613  0.14240  3.38959  2.75784     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01953  3.94571        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentysevenc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:08:11 2012
NSEQ  6
EFFN  3.102539
CKSUM 2734064390
STATS LOCAL MSV       -8.2115  0.71931
STATS LOCAL VITERBI   -7.8157  0.71931
STATS LOCAL FORWARD   -3.5385  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.71970  1.27293  1.04361  1.66765
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  0.00000        *
      1   3.34866  0.14075  3.40161  2.76709      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
      2   2.89580  3.51302  0.12568  3.41008      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
      3   3.34866  0.14075  3.40161  2.76709      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
      4   3.34866  0.14075  3.40161  2.76709      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
      5   3.34866  0.14075  3.40161  2.76709      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
      6   0.15195  3.30713  2.75414  3.20197      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
      7   0.15195  3.30713  2.75414  3.20197      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
      8   2.89580  3.51302  0.12568  3.41008      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
      9   2.89580  3.51302  0.12568  3.41008      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     10   3.01538  2.54843  3.06630  0.19095     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     11   3.01538  2.54843  3.06630  0.19095     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     12   2.89580  3.51302  0.12568  3.41008     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     13   3.34866  0.14075  3.40161  2.76709     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     14   0.15195  3.30713  2.75414  3.20197     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     15   3.34866  0.14075  3.40161  2.76709     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     16   2.89580  3.51302  0.12568  3.41008     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     17   3.34866  0.14075  3.40161  2.76709     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     18   3.34866  0.14075  3.40161  2.76709     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     19   2.89580  3.51302  0.12568  3.41008     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     20   0.15195  3.30713  2.75414  3.20197     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     21   2.89580  3.51302  0.12568  3.41008     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     22   2.89580  3.51302  0.12568  3.41008     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     23   2.89580  3.51302  0.12568  3.41008     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     24   3.34866  0.14075  3.40161  2.76709     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     25   0.15195  3.30713  2.75414  3.20197     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     26   3.34866  0.14075  3.40161  2.76709     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     27   2.89580  3.51302  0.12568  3.41008     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     28   3.01538  2.54843  3.06630  0.19095     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     29   3.34866  0.14075  3.40161  2.76709     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     30   3.01538  2.54843  3.06630  0.19095     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     31   2.89580  3.51302  0.12568  3.41008     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     32   3.34866  0.14075  3.40161  2.76709     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     33   0.15195  3.30713  2.75414  3.20197     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     34   3.01538  2.54843  3.06630  0.19095     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     35   2.89580  3.51302  0.12568  3.41008     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     36   2.89580  3.51302  0.12568  3.41008     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     37   2.89580  3.51302  0.12568  3.41008     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     38   3.01538  2.54843  3.06630  0.19095     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     39   2.89580  3.51302  0.12568  3.41008     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     40   3.01538  2.54843  3.06630  0.19095     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     41   2.89580  3.51302  0.12568  3.41008     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     42   0.15195  3.30713  2.75414  3.20197     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     43   3.01538  2.54843  3.06630  0.19095     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     44   2.89580  3.51302  0.12568  3.41008     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
     45   3.34866  0.14075  3.40161  2.76709     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01941  3.95173        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentythree_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:07:10 2012
NSEQ  95
EFFN  3.273163
CKSUM 688352655
STATS LOCAL MSV       -8.2001  0.71932
STATS LOCAL VITERBI   -7.8064  0.71932
STATS LOCAL FORWARD   -3.7937  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81877  1.14736  1.03868  1.79350
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  0.00000        *
      1   2.93635  3.57151  0.11895  3.47450      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
      2   3.41468  0.13243  3.46492  2.81556      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
      3   3.41468  0.13243  3.46492  2.81556      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
      4   3.41468  0.13243  3.46492  2.81556      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
      5   2.93635  3.57151  0.11895  3.47450      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
      6   0.14402  3.36428  2.79153  3.26443      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
      7   0.14402  3.36428  2.79153  3.26443      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04998  4.00244  3.49078  1.46634  0.26236  1.09861  0.40547
      8   2.92085  3.54908  0.12148  3.44977      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03770  3.99016  3.99016  1.46634  0.26236  0.78800  0.60651
      9   3.41468  0.13243  3.46492  2.81556      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     10   3.41468  0.13243  3.46492  2.81556     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     11   0.27430  2.83445  2.53617  2.28302     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     12   3.07250  2.58489  3.12127  0.18129     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     13   1.59713  1.94122  2.26115  0.59827     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     14   3.41468  0.13243  3.46492  2.81556     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     15   2.93635  3.57151  0.11895  3.47450     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     16   2.93635  3.57151  0.11895  3.47450     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     17   3.41468  0.13243  3.46492  2.81556     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     18   3.41468  0.13243  3.46492  2.81556     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     19   2.93635  3.57151  0.11895  3.47450     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     20   0.14402  3.36428  2.79153  3.26443     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     21   2.93635  3.57151  0.11895  3.47450     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     22   2.93635  3.57151  0.11895  3.47450     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     23   2.93635  3.57151  0.11895  3.47450     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     24   3.41468  0.13243  3.46492  2.81556     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     25   0.14402  3.36428  2.79153  3.26443     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     26   3.41468  0.13243  3.46492  2.81556     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     27   2.93635  3.57151  0.11895  3.47450     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     28   3.41468  0.13243  3.46492  2.81556     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     29   3.41468  0.13243  3.46492  2.81556     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     30   3.07250  2.58489  3.12127  0.18129     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     31   2.93635  3.57151  0.11895  3.47450     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     32   3.41468  0.13243  3.46492  2.81556     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     33   3.41468  0.13243  3.46492  2.81556     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     34   3.07250  2.58489  3.12127  0.18129     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     35   2.93635  3.57151  0.11895  3.47450     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     36   2.93635  3.57151  0.11895  3.47450     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     37   2.93635  3.57151  0.11895  3.47450     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     38   2.80462  1.99740  2.86304  0.29211     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     39   2.93635  3.57151  0.11895  3.47450     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     40   3.07250  2.58489  3.12127  0.18129     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     41   3.41468  0.13243  3.46492  2.81556     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     42   2.93635  3.57151  0.11895  3.47450     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     43   3.07250  2.58489  3.12127  0.18129     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     44   2.86288  3.24962  0.14204  3.30981     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
     45   0.14402  3.36428  2.79153  3.26443     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01879  3.98400        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwoa_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:03:52 2012
NSEQ  29
EFFN  3.260376
CKSUM 1765464125
STATS LOCAL MSV       -8.1194  0.71933
STATS LOCAL VITERBI   -7.9339  0.71933
STATS LOCAL FORWARD   -3.8106  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.05609  1.07633  1.09226  1.63094
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  0.00000        *
      1   2.93342  3.56726  0.11943  3.46982      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
      2   3.40987  0.13301  3.46030  2.81205      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
      3   3.40987  0.13301  3.46030  2.81205      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
      4   3.40987  0.13301  3.46030  2.81205      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
      5   2.93342  3.56726  0.11943  3.46982      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
      6   3.40987  0.13301  3.46030  2.81205      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
      7   2.93342  3.56726  0.11943  3.46982      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
      8   2.93342  3.56726  0.11943  3.46982      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
      9   3.06831  2.58222  3.11724  0.18198      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     10   3.11459  0.20711  3.17359  2.29441     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     11   3.06831  2.58222  3.11724  0.18198     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     12   3.06831  2.58222  3.11724  0.18198     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     13   2.62442  0.44765  2.69452  1.51042     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     14   3.06831  2.58222  3.11724  0.18198     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     15   2.93342  3.56726  0.11943  3.46982     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     16   2.93342  3.56726  0.11943  3.46982     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     17   3.40987  0.13301  3.46030  2.81205     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     18   3.40987  0.13301  3.46030  2.81205     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     19   0.14459  3.36011  2.78881  3.25987     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     20   0.14459  3.36011  2.78881  3.25987     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     21   2.93342  3.56726  0.11943  3.46982     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     22   2.93342  3.56726  0.11943  3.46982     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     23   2.93342  3.56726  0.11943  3.46982     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     24   3.40987  0.13301  3.46030  2.81205     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     25   0.14459  3.36011  2.78881  3.25987     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     26   3.40987  0.13301  3.46030  2.81205     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     27   2.93342  3.56726  0.11943  3.46982     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     28   3.06831  2.58222  3.11724  0.18198     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     29   3.40987  0.13301  3.46030  2.81205     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     30   3.06831  2.58222  3.11724  0.18198     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     31   2.93342  3.56726  0.11943  3.46982     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     32   3.40987  0.13301  3.46030  2.81205     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     33   3.40987  0.13301  3.46030  2.81205     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     34   3.06831  2.58222  3.11724  0.18198     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     35   2.93342  3.56726  0.11943  3.46982     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     36   2.93342  3.56726  0.11943  3.46982     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     37   2.93342  3.56726  0.11943  3.46982     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     38   3.40987  0.13301  3.46030  2.81205     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     39   2.93342  3.56726  0.11943  3.46982     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     40   3.06831  2.58222  3.11724  0.18198     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     41   3.40987  0.13301  3.46030  2.81205     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     42   0.14459  3.36011  2.78881  3.25987     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     43   2.90443  0.28254  2.96888  1.96615     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     44   3.40987  0.13301  3.46030  2.81205     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
     45   2.93342  3.56726  0.11943  3.46982     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01883  3.98162        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwob_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:04:01 2012
NSEQ  3
EFFN  3.000000
CKSUM 2537645075
STATS LOCAL MSV       -8.1699  0.71983
STATS LOCAL VITERBI   -7.8032  0.71983
STATS LOCAL FORWARD   -3.6142  0.71983
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92558  1.10604  1.15098  1.57495
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.86982  3.47591  0.13017  3.36931      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.97980  2.52563  3.03204  0.19727     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   0.15719  3.27118  2.73043  3.16274     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   3.30705  0.14631  3.36166  2.73626     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   3.30705  0.14631  3.36166  2.73626     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.86982  3.47591  0.13017  3.36931     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwoc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:04:10 2012
NSEQ  2
EFFN  2.000000
CKSUM 1546457202
STATS LOCAL MSV       -7.4416  0.72715
STATS LOCAL VITERBI   -8.2310  0.72715
STATS LOCAL FORWARD   -2.9315  0.72715
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.66948  1.15317  1.17024  1.68346
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.53331  3.02441  0.20344  2.88069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.81865  0.23582  2.88868  2.35662     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.53331  3.02441  0.20344  2.88069     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwod_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:04:17 2012
NSEQ  3
EFFN  3.000000
CKSUM 3142111401
STATS LOCAL MSV       -8.1951  0.71984
STATS LOCAL VITERBI   -7.8511  0.71984
STATS LOCAL FORWARD   -3.4557  0.71984
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63362  1.16016  1.20167  1.65731
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.86982  3.47591  0.13017  3.36931      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   0.15719  3.27118  2.73043  3.16274     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   0.15719  3.27118  2.73043  3.16274     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   0.15719  3.27118  2.73043  3.16274     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.86982  3.47591  0.13017  3.36931     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwoe_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:04:32 2012
NSEQ  14
EFFN  3.182129
CKSUM 3263474986
STATS LOCAL MSV       -8.2849  0.71931
STATS LOCAL VITERBI   -7.9060  0.71931
STATS LOCAL FORWARD   -3.3628  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.04320  1.23915  0.94907  1.64167
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  0.00000        *
      1   2.91511  3.54080  0.12243  3.44065      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
      2   3.37995  0.13673  3.43163  2.79013      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
      3   3.37995  0.13673  3.43163  2.79013      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
      4   3.37995  0.13673  3.43163  2.79013      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
      5   2.91511  3.54080  0.12243  3.44065      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
      6   0.14813  3.33419  2.77189  3.23153      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
      7   2.91511  3.54080  0.12243  3.44065      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
      8   2.91511  3.54080  0.12243  3.44065      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
      9   3.37995  0.13673  3.43163  2.79013      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     10   2.44259  0.65730  2.51520  1.15845     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     11   3.04234  2.56566  3.09225  0.18632     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     12   3.04234  2.56566  3.09225  0.18632     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     13   2.91511  3.54080  0.12243  3.44065     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     14   3.04234  2.56566  3.09225  0.18632     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     15   2.91511  3.54080  0.12243  3.44065     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     16   2.91511  3.54080  0.12243  3.44065     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     17   3.37995  0.13673  3.43163  2.79013     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     18   3.37995  0.13673  3.43163  2.79013     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     19   2.91511  3.54080  0.12243  3.44065     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     20   0.14813  3.33419  2.77189  3.23153     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     21   2.91511  3.54080  0.12243  3.44065     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     22   2.91511  3.54080  0.12243  3.44065     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     23   2.91511  3.54080  0.12243  3.44065     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     24   3.37995  0.13673  3.43163  2.79013     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     25   0.14813  3.33419  2.77189  3.23153     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     26   3.37995  0.13673  3.43163  2.79013     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     27   2.91511  3.54080  0.12243  3.44065     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     28   3.37995  0.13673  3.43163  2.79013     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     29   3.37995  0.13673  3.43163  2.79013     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     30   3.04234  2.56566  3.09225  0.18632     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     31   2.91511  3.54080  0.12243  3.44065     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     32   3.37995  0.13673  3.43163  2.79013     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     33   3.04234  2.56566  3.09225  0.18632     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     34   3.04234  2.56566  3.09225  0.18632     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     35   2.91511  3.54080  0.12243  3.44065     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     36   2.91511  3.54080  0.12243  3.44065     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     37   2.91511  3.54080  0.12243  3.44065     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     38   3.37995  0.13673  3.43163  2.79013     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     39   2.91511  3.54080  0.12243  3.44065     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     40   3.04234  2.56566  3.09225  0.18632     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     41   3.37995  0.13673  3.43163  2.79013     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     42   0.14813  3.33419  2.77189  3.23153     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     43   3.04234  2.56566  3.09225  0.18632     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     44   2.91511  3.54080  0.12243  3.44065     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
     45   2.91511  3.54080  0.12243  3.44065     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01911  3.96691        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwof_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:04:41 2012
NSEQ  6
EFFN  3.219727
CKSUM 3873813818
STATS LOCAL MSV       -8.1728  0.71932
STATS LOCAL VITERBI   -7.6377  0.71932
STATS LOCAL FORWARD   -4.0506  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82052  1.38584  1.14282  1.31294
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  0.00000        *
      1   2.92399  3.55362  0.12096  3.45477      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
      2   3.39443  0.13492  3.44551  2.80075      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
      3   3.39443  0.13492  3.44551  2.80075      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
      4   3.05488  2.57367  3.10432  0.18421      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
      5   2.92399  3.55362  0.12096  3.45477      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
      6   0.14640  3.34673  2.78009  3.24524      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
      7   3.05488  2.57367  3.10432  0.18421      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
      8   2.92399  3.55362  0.12096  3.45477      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
      9   3.39443  0.13492  3.44551  2.80075      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     10   3.39443  0.13492  3.44551  2.80075     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     11   0.14640  3.34673  2.78009  3.24524     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     12   3.05488  2.57367  3.10432  0.18421     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     13   3.05488  2.57367  3.10432  0.18421     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     14   3.05488  2.57367  3.10432  0.18421     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     15   2.92399  3.55362  0.12096  3.45477     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     16   2.92399  3.55362  0.12096  3.45477     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     17   3.05488  2.57367  3.10432  0.18421     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     18   2.92399  3.55362  0.12096  3.45477     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     19   2.92399  3.55362  0.12096  3.45477     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     20   0.14640  3.34673  2.78009  3.24524     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     21   2.92399  3.55362  0.12096  3.45477     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     22   2.92399  3.55362  0.12096  3.45477     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     23   2.92399  3.55362  0.12096  3.45477     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     24   3.39443  0.13492  3.44551  2.80075     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     25   0.14640  3.34673  2.78009  3.24524     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     26   3.39443  0.13492  3.44551  2.80075     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     27   0.14640  3.34673  2.78009  3.24524     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     28   3.05488  2.57367  3.10432  0.18421     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     29   3.39443  0.13492  3.44551  2.80075     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     30   3.05488  2.57367  3.10432  0.18421     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     31   2.92399  3.55362  0.12096  3.45477     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     32   3.39443  0.13492  3.44551  2.80075     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     33   3.39443  0.13492  3.44551  2.80075     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     34   3.05488  2.57367  3.10432  0.18421     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     35   2.92399  3.55362  0.12096  3.45477     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     36   3.05488  2.57367  3.10432  0.18421     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     37   2.92399  3.55362  0.12096  3.45477     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     38   3.05488  2.57367  3.10432  0.18421     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     39   2.92399  3.55362  0.12096  3.45477     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     40   3.05488  2.57367  3.10432  0.18421     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     41   3.39443  0.13492  3.44551  2.80075     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     42   0.14640  3.34673  2.78009  3.24524     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     43   3.39443  0.13492  3.44551  2.80075     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     44   2.92399  3.55362  0.12096  3.45477     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
     45   3.05488  2.57367  3.10432  0.18421     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01898  3.97401        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwog_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:04:50 2012
NSEQ  2
EFFN  2.000000
CKSUM 4189612609
STATS LOCAL MSV       -7.5585  0.72798
STATS LOCAL VITERBI   -8.2493  0.72798
STATS LOCAL FORWARD   -3.2939  0.72798
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.52018  1.19407  1.24915  1.65237
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   0.23862  2.84929  2.43386  2.70756      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   1.89532  1.96405  1.06955  1.00436     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.81865  0.23582  2.88868  2.35662     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwoh_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:05:00 2012
NSEQ  2
EFFN  2.000000
CKSUM 731096773
STATS LOCAL MSV       -7.5025  0.72838
STATS LOCAL VITERBI   -8.3209  0.72838
STATS LOCAL FORWARD   -3.2627  0.72838
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63166  1.32411  1.21084  1.42541
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   1.01448  1.11006  1.95471  1.79419      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   0.23862  2.84929  2.43386  2.70756      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.81865  0.23582  2.88868  2.35662     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwoi_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:05:07 2012
NSEQ  3
EFFN  3.000000
CKSUM 367268286
STATS LOCAL MSV       -8.1402  0.72004
STATS LOCAL VITERBI   -7.7871  0.72004
STATS LOCAL FORWARD   -3.9309  0.72004
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.62474  1.46447  1.09052  1.44479
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   0.15719  3.27118  2.73043  3.16274      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   0.15719  3.27118  2.73043  3.16274     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.97980  2.52563  3.03204  0.19727     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.97980  2.52563  3.03204  0.19727     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.97980  2.52563  3.03204  0.19727     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   3.30705  0.14631  3.36166  2.73626     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.86982  3.47591  0.13017  3.36931     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwoj_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:05:15 2012
NSEQ  5
EFFN  3.364258
CKSUM 36523570
STATS LOCAL MSV       -8.1118  0.71932
STATS LOCAL VITERBI   -7.5667  0.71932
STATS LOCAL FORWARD   -3.6845  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81723  1.29833  1.10024  1.46212
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  0.00000        *
      1   2.95673  3.60115  0.11570  3.50722      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
      2   3.44834  0.12841  3.49715  2.84007      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
      3   3.44834  0.12841  3.49715  2.84007      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
      4   3.10197  2.60364  3.14962  0.17654      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
      5   2.95673  3.60115  0.11570  3.50722      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
      6   3.44834  0.12841  3.49715  2.84007      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
      7   0.14016  3.39348  2.81050  3.29640      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
      8   2.95673  3.60115  0.11570  3.50722      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
      9   3.44834  0.12841  3.49715  2.84007      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     10   3.44834  0.12841  3.49715  2.84007     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     11   0.14016  3.39348  2.81050  3.29640     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     12   2.45545  1.19657  2.52565  0.63123     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     13   3.10197  2.60364  3.14962  0.17654     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     14   0.14016  3.39348  2.81050  3.29640     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     15   2.95673  3.60115  0.11570  3.50722     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     16   2.95673  3.60115  0.11570  3.50722     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     17   3.44834  0.12841  3.49715  2.84007     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     18   3.44834  0.12841  3.49715  2.84007     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     19   2.36626  1.91759  0.39750  2.43947     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     20   0.14016  3.39348  2.81050  3.29640     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     21   2.95673  3.60115  0.11570  3.50722     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     22   2.95673  3.60115  0.11570  3.50722     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     23   2.95673  3.60115  0.11570  3.50722     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     24   3.44834  0.12841  3.49715  2.84007     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     25   0.14016  3.39348  2.81050  3.29640     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     26   3.44834  0.12841  3.49715  2.84007     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     27   2.95673  3.60115  0.11570  3.50722     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     28   3.10197  2.60364  3.14962  0.17654     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     29   3.10197  2.60364  3.14962  0.17654     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     30   3.10197  2.60364  3.14962  0.17654     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     31   2.95673  3.60115  0.11570  3.50722     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     32   3.44834  0.12841  3.49715  2.84007     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     33   3.10197  2.60364  3.14962  0.17654     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     34   3.10197  2.60364  3.14962  0.17654     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     35   2.95673  3.60115  0.11570  3.50722     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     36   2.95673  3.60115  0.11570  3.50722     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     37   2.95673  3.60115  0.11570  3.50722     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     38   3.10197  2.60364  3.14962  0.17654     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     39   2.95673  3.60115  0.11570  3.50722     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     40   3.10197  2.60364  3.14962  0.17654     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     41   3.44834  0.12841  3.49715  2.84007     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     42   0.14016  3.39348  2.81050  3.29640     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     43   3.10197  2.60364  3.14962  0.17654     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     44   2.95673  3.60115  0.11570  3.50722     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
     45   3.44834  0.12841  3.49715  2.84007     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01847  4.00081        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwok_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:05:22 2012
NSEQ  7
EFFN  3.448730
CKSUM 3430059084
STATS LOCAL MSV       -7.3025  0.71933
STATS LOCAL VITERBI   -7.6783  0.71933
STATS LOCAL FORWARD   -3.9356  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.76008  1.42979  1.13365  1.32143
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  0.00000        *
      1   2.97490  3.62770  0.11288  3.53655      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
      2   3.47859  0.12491  3.52610  2.86199      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
      3   3.47859  0.12491  3.52610  2.86199      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
      4   3.12868  2.62060  3.17529  0.17235      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
      5   3.47859  0.12491  3.52610  2.86199      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
      6   0.13679  3.41978  2.82753  3.32522      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
      7   0.58968  2.32944  2.25016  1.41567      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
      8   2.97490  3.62770  0.11288  3.53655      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
      9   3.47859  0.12491  3.52610  2.86199      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     10   3.47859  0.12491  3.52610  2.86199     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     11   0.13679  3.41978  2.82753  3.32522     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     12   3.12868  2.62060  3.17529  0.17235     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     13   3.12868  2.62060  3.17529  0.17235     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     14   0.13679  3.41978  2.82753  3.32522     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     15   2.97490  3.62770  0.11288  3.53655     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     16   2.97490  3.62770  0.11288  3.53655     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     17   3.12868  2.62060  3.17529  0.17235     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     18   3.12868  2.62060  3.17529  0.17235     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     19   2.97490  3.62770  0.11288  3.53655     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     20   0.13679  3.41978  2.82753  3.32522     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     21   2.97490  3.62770  0.11288  3.53655     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     22   2.97490  3.62770  0.11288  3.53655     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     23   2.97490  3.62770  0.11288  3.53655     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     24   3.47859  0.12491  3.52610  2.86199     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     25   0.13679  3.41978  2.82753  3.32522     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     26   3.47859  0.12491  3.52610  2.86199     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     27   2.97490  3.62770  0.11288  3.53655     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     28   2.45321  1.12645  2.52382  0.67404     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     29   3.12868  2.62060  3.17529  0.17235     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     30   3.12868  2.62060  3.17529  0.17235     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     31   2.97490  3.62770  0.11288  3.53655     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     32   3.47859  0.12491  3.52610  2.86199     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     33   3.12868  2.62060  3.17529  0.17235     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     34   3.12868  2.62060  3.17529  0.17235     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     35   2.97490  3.62770  0.11288  3.53655     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     36   2.97490  3.62770  0.11288  3.53655     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     37   2.97490  3.62770  0.11288  3.53655     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     38   3.12868  2.62060  3.17529  0.17235     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     39   2.97490  3.62770  0.11288  3.53655     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     40   3.12868  2.62060  3.17529  0.17235     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     41   3.47859  0.12491  3.52610  2.86199     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     42   0.13679  3.41978  2.82753  3.32522     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     43   3.12868  2.62060  3.17529  0.17235     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     44   2.97490  3.62770  0.11288  3.53655     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
     45   3.47859  0.12491  3.52610  2.86199     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01819  4.01615        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwol_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:05:41 2012
NSEQ  116
EFFN  3.961304
CKSUM 538949657
STATS LOCAL MSV       -7.1544  0.71931
STATS LOCAL VITERBI   -7.8271  0.71931
STATS LOCAL FORWARD   -3.3492  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.70967  1.06073  1.05535  2.08105
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  0.00000        *
      1   3.07219  3.77129  0.09890  3.69572      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
      2   3.64389  0.10765  3.68396  2.98017      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
      3   3.64389  0.10765  3.68396  2.98017      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
      4   3.35116  0.17078  3.40267  2.42285      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
      5   3.07219  3.77129  0.09890  3.69572      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
      6   0.11978  3.56458  2.92066  3.48420      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
      7   3.07219  3.77129  0.09890  3.69572      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
      8   3.07219  3.77129  0.09890  3.69572      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
      9   3.57056  0.12179  3.61350  2.82067      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     10   3.64389  0.10765  3.68396  2.98017     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     11   0.22681  3.05073  2.68861  2.43467     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     12   0.30585  3.01533  1.83789  2.89466     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     13   2.51625  0.86740  2.58719  0.85810     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     14   3.08039  0.14719  3.42228  2.84230     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     15   2.98457  3.58256  0.12541  3.23158     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     16   3.07219  3.77129  0.09890  3.69572     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     17   2.70822  0.46588  2.77703  1.41248     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     18   3.29513  0.18546  3.34863  2.33222     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     19   0.83191  2.61877  0.89684  2.47654     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     20   0.11978  3.56458  2.92066  3.48420     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     21   3.07219  3.77129  0.09890  3.69572     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     22   3.07219  3.77129  0.09890  3.69572     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     23   3.07219  3.77129  0.09890  3.69572     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     24   3.64389  0.10765  3.68396  2.98017     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     25   0.11978  3.56458  2.92066  3.48420     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     26   3.64389  0.10765  3.68396  2.98017     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     27   3.07219  3.77129  0.09890  3.69572     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     28   3.27872  2.71575  3.31947  0.15083     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     29   3.17025  0.22248  3.22784  2.13851     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     30   2.85803  0.35730  2.92386  1.66428     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     31   3.07219  3.77129  0.09890  3.69572     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     32   3.64389  0.10765  3.68396  2.98017     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     33   3.54039  0.12787  3.58455  2.76016     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     34   3.27872  2.71575  3.31947  0.15083     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     35   3.07219  3.77129  0.09890  3.69572     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     36   3.07219  3.77129  0.09890  3.69572     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     37   3.07219  3.77129  0.09890  3.69572     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     38   3.64389  0.10765  3.68396  2.98017     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     39   3.07219  3.77129  0.09890  3.69572     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     40   3.27872  2.71575  3.31947  0.15083     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     41   3.64389  0.10765  3.68396  2.98017     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     42   0.11978  3.56458  2.92066  3.48420     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     43   0.18025  3.34188  2.40153  3.24455     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     44   2.25273  2.47350  0.29035  2.77099     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
     45   3.64389  0.10765  3.68396  2.98017     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01664  4.10451        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwom_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:05:48 2012
NSEQ  5
EFFN  3.012695
CKSUM 3140000806
STATS LOCAL MSV       -8.2727  0.71934
STATS LOCAL VITERBI   -7.9956  0.71934
STATS LOCAL FORWARD   -3.4801  0.71934
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72318  1.06872  1.04741  2.06195
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  0.00000        *
      1   2.87311  3.48058  0.12960  3.37444      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
      2   3.31228  0.14560  3.36668  2.74015      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
      3   3.31228  0.14560  3.36668  2.74015      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
      4   3.31228  0.14560  3.36668  2.74015      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
      5   2.87311  3.48058  0.12960  3.37444      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
      6   0.15652  3.27570  2.73342  3.16767      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
      7   2.87311  3.48058  0.12960  3.37444      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
      8   2.87311  3.48058  0.12960  3.37444      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
      9   3.31228  0.14560  3.36668  2.74015      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     10   3.31228  0.14560  3.36668  2.74015     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     11   2.87311  3.48058  0.12960  3.37444     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     12   2.98425  2.52849  3.03633  0.19646     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     13   3.31228  0.14560  3.36668  2.74015     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     14   0.15652  3.27570  2.73342  3.16767     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     15   2.87311  3.48058  0.12960  3.37444     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     16   2.87311  3.48058  0.12960  3.37444     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     17   3.31228  0.14560  3.36668  2.74015     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     18   3.31228  0.14560  3.36668  2.74015     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     19   0.15652  3.27570  2.73342  3.16767     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     20   0.15652  3.27570  2.73342  3.16767     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     21   2.87311  3.48058  0.12960  3.37444     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     22   2.87311  3.48058  0.12960  3.37444     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     23   2.87311  3.48058  0.12960  3.37444     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     24   3.31228  0.14560  3.36668  2.74015     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     25   0.15652  3.27570  2.73342  3.16767     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     26   3.31228  0.14560  3.36668  2.74015     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     27   2.87311  3.48058  0.12960  3.37444     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     28   2.98425  2.52849  3.03633  0.19646     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     29   3.31228  0.14560  3.36668  2.74015     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     30   3.31228  0.14560  3.36668  2.74015     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     31   2.87311  3.48058  0.12960  3.37444     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     32   3.31228  0.14560  3.36668  2.74015     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     33   3.31228  0.14560  3.36668  2.74015     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     34   2.98425  2.52849  3.03633  0.19646     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     35   2.87311  3.48058  0.12960  3.37444     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     36   2.87311  3.48058  0.12960  3.37444     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     37   2.87311  3.48058  0.12960  3.37444     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     38   3.31228  0.14560  3.36668  2.74015     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     39   2.87311  3.48058  0.12960  3.37444     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     40   2.98425  2.52849  3.03633  0.19646     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     41   3.31228  0.14560  3.36668  2.74015     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     42   0.15652  3.27570  2.73342  3.16767     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     43   0.15652  3.27570  2.73342  3.16767     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     44   2.87311  3.48058  0.12960  3.37444     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
     45   3.31228  0.14560  3.36668  2.74015     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01975  3.93431        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwon_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:05:56 2012
NSEQ  89
EFFN  3.805206
CKSUM 1005965737
STATS LOCAL MSV       -7.3815  0.71932
STATS LOCAL VITERBI   -7.8302  0.71932
STATS LOCAL FORWARD   -3.5553  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.64251  1.12328  1.08155  1.95033
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  0.00000        *
      1   3.04470  3.73053  0.10266  3.65047      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
      2   3.59670  0.11228  3.63895  2.94668      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
      3   3.59670  0.11228  3.63895  2.94668      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
      4   2.66051  1.47511  2.72546  0.45284      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
      5   2.97092  3.57249  0.12491  3.26803      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
      6   0.12440  3.52302  2.89399  3.43852      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
      7   2.97300  3.57677  0.12426  3.27724      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
      8   3.04470  3.73053  0.10266  3.65047      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
      9   3.59670  0.11228  3.63895  2.94668      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     10   3.46992  0.13784  3.51689  2.68896     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     11   0.12440  3.52302  2.89399  3.43852     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     12   0.20209  3.02215  2.58211  2.83581     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     13   3.44636  0.14295  3.49423  2.64547     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     14   2.70171  2.30113  2.96020  0.24724     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     15   2.64615  3.54987  0.14062  3.45677     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     16   3.04470  3.73053  0.10266  3.65047     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     17   3.45477  0.14111  3.50232  2.66087     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     18   2.89013  0.32717  2.95513  1.76379     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     19   0.19587  3.26763  2.32726  3.16474     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     20   0.12440  3.52302  2.89399  3.43852     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     21   2.61866  3.53526  0.14397  3.44103     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     22   3.04470  3.73053  0.10266  3.65047     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     23   3.04470  3.73053  0.10266  3.65047     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     24   3.59670  0.11228  3.63895  2.94668     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     25   0.12440  3.52302  2.89399  3.43852     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     26   3.50014  0.13147  3.54596  2.74642     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     27   3.04470  3.73053  0.10266  3.65047     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     28   3.15922  2.49068  3.20480  0.18138     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     29   3.08200  0.24476  3.14207  2.05534     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     30   3.44545  0.14315  3.49335  2.64381     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     31   3.04470  3.73053  0.10266  3.65047     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     32   3.59670  0.11228  3.63895  2.94668     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     33   3.38625  0.15662  3.43637  2.53892     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     34   3.23512  2.68809  3.27758  0.15675     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     35   3.04470  3.73053  0.10266  3.65047     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     36   3.04470  3.73053  0.10266  3.65047     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     37   3.04470  3.73053  0.10266  3.65047     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     38   2.88303  0.26842  2.66900  2.20610     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     39   3.04470  3.73053  0.10266  3.65047     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     40   3.23512  2.68809  3.27758  0.15675     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     41   3.24277  0.19357  3.29791  2.30284     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     42   0.12440  3.52302  2.89399  3.43852     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     43   0.23909  2.99369  2.65083  2.38640     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     44   2.26597  3.32606  0.19816  3.21653     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
     45   3.44691  0.14283  3.49476  2.64649     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01708  4.07842        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwoo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:06:04 2012
NSEQ  6
EFFN  3.120117
CKSUM 1384330421
STATS LOCAL MSV       -8.0965  0.71932
STATS LOCAL VITERBI   -7.8574  0.71932
STATS LOCAL FORWARD   -3.6227  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63454  1.21367  1.14412  1.66418
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  0.00000        *
      1   2.90013  3.51923  0.12494  3.41691      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
      2   3.35564  0.13984  3.40831  2.77225      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
      3   3.35564  0.13984  3.40831  2.77225      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
      4   3.35564  0.13984  3.40831  2.77225      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
      5   2.90013  3.51923  0.12494  3.41691      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
      6   0.15109  3.31317  2.75811  3.20856      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
      7   2.90013  3.51923  0.12494  3.41691      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
      8   2.90013  3.51923  0.12494  3.41691      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
      9   3.35564  0.13984  3.40831  2.77225      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     10   3.35564  0.13984  3.40831  2.77225     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     11   0.15109  3.31317  2.75811  3.20856     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     12   0.15109  3.31317  2.75811  3.20856     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     13   3.35564  0.13984  3.40831  2.77225     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     14   3.35564  0.13984  3.40831  2.77225     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     15   2.90013  3.51923  0.12494  3.41691     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     16   2.90013  3.51923  0.12494  3.41691     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     17   3.02138  2.55227  3.07208  0.18991     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     18   3.35564  0.13984  3.40831  2.77225     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     19   0.15109  3.31317  2.75811  3.20856     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     20   0.15109  3.31317  2.75811  3.20856     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     21   2.90013  3.51923  0.12494  3.41691     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     22   2.90013  3.51923  0.12494  3.41691     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     23   2.90013  3.51923  0.12494  3.41691     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     24   3.35564  0.13984  3.40831  2.77225     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     25   0.15109  3.31317  2.75811  3.20856     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     26   3.35564  0.13984  3.40831  2.77225     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     27   2.90013  3.51923  0.12494  3.41691     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     28   3.02138  2.55227  3.07208  0.18991     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     29   3.02138  2.55227  3.07208  0.18991     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     30   3.02138  2.55227  3.07208  0.18991     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     31   3.02138  2.55227  3.07208  0.18991     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     32   3.35564  0.13984  3.40831  2.77225     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     33   3.35564  0.13984  3.40831  2.77225     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     34   3.02138  2.55227  3.07208  0.18991     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     35   2.90013  3.51923  0.12494  3.41691     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     36   2.90013  3.51923  0.12494  3.41691     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     37   2.90013  3.51923  0.12494  3.41691     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     38   3.02138  2.55227  3.07208  0.18991     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     39   2.90013  3.51923  0.12494  3.41691     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     40   3.02138  2.55227  3.07208  0.18991     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     41   3.35564  0.13984  3.40831  2.77225     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     42   0.15109  3.31317  2.75811  3.20856     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     43   0.15109  3.31317  2.75811  3.20856     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     44   2.90013  3.51923  0.12494  3.41691     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
     45   3.35564  0.13984  3.40831  2.77225     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01934  3.95510        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwop_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:06:14 2012
NSEQ  3
EFFN  3.000000
CKSUM 1100070553
STATS LOCAL MSV       -8.1489  0.71969
STATS LOCAL VITERBI   -7.8550  0.71969
STATS LOCAL FORWARD   -3.7050  0.71969
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.55400  1.11344  1.20131  1.83651
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   0.15719  3.27118  2.73043  3.16274      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.97980  2.52563  3.03204  0.19727      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   0.15719  3.27118  2.73043  3.16274     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.86982  3.47591  0.13017  3.36931     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwoq_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:06:22 2012
NSEQ  3
EFFN  3.000000
CKSUM 4026879485
STATS LOCAL MSV       -8.2087  0.71964
STATS LOCAL VITERBI   -7.9281  0.71964
STATS LOCAL FORWARD   -3.2659  0.71964
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.71764  1.21985  1.04576  1.74978
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   0.15719  3.27118  2.73043  3.16274      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.97980  2.52563  3.03204  0.19727     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.97980  2.52563  3.03204  0.19727     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   3.30705  0.14631  3.36166  2.73626     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.86982  3.47591  0.13017  3.36931     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.86982  3.47591  0.13017  3.36931     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwor_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:06:32 2012
NSEQ  2
EFFN  2.000000
CKSUM 2741897416
STATS LOCAL MSV       -7.7301  0.72718
STATS LOCAL VITERBI   -8.3714  0.72718
STATS LOCAL FORWARD   -3.1304  0.72718
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.83360  1.15080  1.12517  1.61354
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.53331  3.02441  0.20344  2.88069     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwos_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:06:39 2012
NSEQ  4
EFFN  3.175781
CKSUM 1647101817
STATS LOCAL MSV       -8.1934  0.71933
STATS LOCAL VITERBI   -7.6964  0.71933
STATS LOCAL FORWARD   -3.7242  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.05058  1.08581  1.04413  1.70534
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  0.00000        *
      1   2.91360  3.53861  0.12268  3.43825      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      2   3.37748  0.13704  3.42926  2.78832      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      3   3.37748  0.13704  3.42926  2.78832      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      4   3.37748  0.13704  3.42926  2.78832      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      5   2.91360  3.53861  0.12268  3.43825      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      6   2.91360  3.53861  0.12268  3.43825      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      7   0.14843  3.33206  2.77050  3.22920      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      8   2.91360  3.53861  0.12268  3.43825      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      9   3.37748  0.13704  3.42926  2.78832      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     10   3.37748  0.13704  3.42926  2.78832     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     11   3.04021  2.56430  3.09020  0.18668     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     12   3.04021  2.56430  3.09020  0.18668     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     13   3.37748  0.13704  3.42926  2.78832     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     14   3.04021  2.56430  3.09020  0.18668     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     15   2.91360  3.53861  0.12268  3.43825     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     16   2.91360  3.53861  0.12268  3.43825     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     17   3.37748  0.13704  3.42926  2.78832     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     18   3.37748  0.13704  3.42926  2.78832     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     19   2.91360  3.53861  0.12268  3.43825     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     20   0.14843  3.33206  2.77050  3.22920     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     21   2.91360  3.53861  0.12268  3.43825     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     22   2.91360  3.53861  0.12268  3.43825     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     23   2.91360  3.53861  0.12268  3.43825     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     24   3.37748  0.13704  3.42926  2.78832     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     25   0.14843  3.33206  2.77050  3.22920     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     26   3.37748  0.13704  3.42926  2.78832     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     27   2.91360  3.53861  0.12268  3.43825     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     28   3.04021  2.56430  3.09020  0.18668     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     29   3.37748  0.13704  3.42926  2.78832     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     30   3.04021  2.56430  3.09020  0.18668     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     31   2.91360  3.53861  0.12268  3.43825     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     32   3.37748  0.13704  3.42926  2.78832     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     33   3.37748  0.13704  3.42926  2.78832     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     34   3.04021  2.56430  3.09020  0.18668     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     35   2.91360  3.53861  0.12268  3.43825     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     36   2.91360  3.53861  0.12268  3.43825     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     37   2.91360  3.53861  0.12268  3.43825     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     38   3.37748  0.13704  3.42926  2.78832     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     39   2.91360  3.53861  0.12268  3.43825     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     40   3.04021  2.56430  3.09020  0.18668     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     41   3.37748  0.13704  3.42926  2.78832     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     42   0.14843  3.33206  2.77050  3.22920     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     43   2.37895  0.96228  2.45142  0.82289     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     44   2.91360  3.53861  0.12268  3.43825     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     45   3.37748  0.13704  3.42926  2.78832     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01914  3.96571        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwot_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:06:47 2012
NSEQ  3
EFFN  3.000000
CKSUM 3561680478
STATS LOCAL MSV       -8.2737  0.71962
STATS LOCAL VITERBI   -7.7056  0.71962
STATS LOCAL FORWARD   -3.6667  0.71962
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72378  1.06331  1.14947  1.83576
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   0.15719  3.27118  2.73043  3.16274      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   0.15719  3.27118  2.73043  3.16274     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.97980  2.52563  3.03204  0.19727     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   3.30705  0.14631  3.36166  2.73626     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_twentytwou_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 01:06:56 2012
NSEQ  2
EFFN  2.000000
CKSUM 240493008
STATS LOCAL MSV       -7.5228  0.72718
STATS LOCAL VITERBI   -8.2769  0.72718
STATS LOCAL FORWARD   -3.1256  0.72718
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.83332  1.15081  1.12531  1.61351
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.53331  3.02441  0.20344  2.88069     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Tracheophyta_58S_end_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 18 00:55:23 2012
NSEQ  29
EFFN  3.246216
CKSUM 3154564610
STATS LOCAL MSV       -8.3504  0.71932
STATS LOCAL VITERBI   -7.5845  0.71932
STATS LOCAL FORWARD   -3.8947  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81993  1.14571  1.08965  1.69482
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  0.00000        *
      1   2.93015  3.56253  0.11996  3.46460      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
      2   3.40451  0.13367  3.45517  2.80813      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
      3   3.40451  0.13367  3.45517  2.80813      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
      4   3.11719  0.20567  3.17613  2.30386      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
      5   2.93015  3.56253  0.11996  3.46460      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
      6   0.14521  3.35547  2.78579  3.25479      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
      7   0.14521  3.35547  2.78579  3.25479      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
      8   2.93015  3.56253  0.11996  3.46460      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
      9   3.40451  0.13367  3.45517  2.80813      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     10   3.40451  0.13367  3.45517  2.80813     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     11   3.06365  2.57925  3.11275  0.18275     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     12   3.06365  2.57925  3.11275  0.18275     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     13   3.06365  2.57925  3.11275  0.18275     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     14   0.14521  3.35547  2.78579  3.25479     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     15   2.93015  3.56253  0.11996  3.46460     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     16   2.93015  3.56253  0.11996  3.46460     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     17   2.69737  1.80003  2.75945  0.35098     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     18   3.40451  0.13367  3.45517  2.80813     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     19   2.93015  3.56253  0.11996  3.46460     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     20   0.14521  3.35547  2.78579  3.25479     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     21   2.93015  3.56253  0.11996  3.46460     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     22   2.93015  3.56253  0.11996  3.46460     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     23   2.93015  3.56253  0.11996  3.46460     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     24   3.40451  0.13367  3.45517  2.80813     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     25   0.14521  3.35547  2.78579  3.25479     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     26   3.40451  0.13367  3.45517  2.80813     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     27   2.93015  3.56253  0.11996  3.46460     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     28   2.59719  1.60135  2.66254  0.42446     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     29   3.40451  0.13367  3.45517  2.80813     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     30   3.06365  2.57925  3.11275  0.18275     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     31   2.93015  3.56253  0.11996  3.46460     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     32   3.40451  0.13367  3.45517  2.80813     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     33   3.40451  0.13367  3.45517  2.80813     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     34   3.06365  2.57925  3.11275  0.18275     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     35   2.93015  3.56253  0.11996  3.46460     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     36   2.93015  3.56253  0.11996  3.46460     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     37   2.93015  3.56253  0.11996  3.46460     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     38   3.40451  0.13367  3.45517  2.80813     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     39   2.93015  3.56253  0.11996  3.46460     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     40   3.06365  2.57925  3.11275  0.18275     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     41   3.40451  0.13367  3.45517  2.80813     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     42   0.14521  3.35547  2.78579  3.25479     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     43   3.40451  0.13367  3.45517  2.80813     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     44   2.93015  3.56253  0.11996  3.46460     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
     45   3.40451  0.13367  3.45517  2.80813     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01888  3.97897        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_eight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:00:21 2012
NSEQ  18
EFFN  3.300293
CKSUM 3900505399
STATS LOCAL MSV       -8.0180  0.71934
STATS LOCAL VITERBI   -7.6250  0.71934
STATS LOCAL FORWARD   -4.2046  0.71934
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40393  1.38116  1.37967  1.38063
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  0.00000        *
      1   3.08135  2.59052  3.12978  0.17985      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
      2   2.94250  3.58045  0.11796  3.48436      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
      3   0.14285  3.37307  2.79725  3.27405      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
      4   3.42482  0.13120  3.47463  2.82296      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
      5   3.08135  2.59052  3.12978  0.17985      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
      6   3.42482  0.13120  3.47463  2.82296      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
      7   3.08135  2.59052  3.12978  0.17985      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
      8   3.42482  0.13120  3.47463  2.82296      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
      9   2.94250  3.58045  0.11796  3.48436      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     10   2.94250  3.58045  0.11796  3.48436     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     11   3.42482  0.13120  3.47463  2.82296     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     12   0.14285  3.37307  2.79725  3.27405     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     13   0.14285  3.37307  2.79725  3.27405     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     14   2.71603  1.81090  2.77762  0.34507     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     15   2.94250  3.58045  0.11796  3.48436     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     16   2.94250  3.58045  0.11796  3.48436     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     17   0.14285  3.37307  2.79725  3.27405     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     18   3.08135  2.59052  3.12978  0.17985     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     19   0.14285  3.37307  2.79725  3.27405     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     20   3.08135  2.59052  3.12978  0.17985     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     21   3.42482  0.13120  3.47463  2.82296     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     22   3.08135  2.59052  3.12978  0.17985     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     23   3.42482  0.13120  3.47463  2.82296     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     24   2.94250  3.58045  0.11796  3.48436     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     25   2.94250  3.58045  0.11796  3.48436     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     26   3.42482  0.13120  3.47463  2.82296     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     27   3.08135  2.59052  3.12978  0.17985     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     28   3.42482  0.13120  3.47463  2.82296     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     29   3.08135  2.59052  3.12978  0.17985     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     30   3.08135  2.59052  3.12978  0.17985     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     31   2.94250  3.58045  0.11796  3.48436     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     32   3.42482  0.13120  3.47463  2.82296     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     33   0.14285  3.37307  2.79725  3.27405     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     34   3.08135  2.59052  3.12978  0.17985     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     35   3.42482  0.13120  3.47463  2.82296     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     36   2.94250  3.58045  0.11796  3.48436     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     37   0.14285  3.37307  2.79725  3.27405     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     38   3.08135  2.59052  3.12978  0.17985     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     39   2.94250  3.58045  0.11796  3.48436     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     40   0.14285  3.37307  2.79725  3.27405     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     41   0.14285  3.37307  2.79725  3.27405     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     42   2.94250  3.58045  0.11796  3.48436     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     43   0.14285  3.37307  2.79725  3.27405     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     44   0.14285  3.37307  2.79725  3.27405     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
     45   3.42482  0.13120  3.47463  2.82296     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01869  3.98904        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_elevena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:15:03 2012
NSEQ  5
EFFN  3.198242
CKSUM 492245523
STATS LOCAL MSV       -8.0269  0.71932
STATS LOCAL VITERBI   -7.6136  0.71932
STATS LOCAL FORWARD   -3.7504  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34311  1.20704  1.45350  1.57922
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  0.00000        *
      1   3.38618  0.13595  3.43760  2.79470      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
      2   2.91894  3.54631  0.12180  3.44673      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
      3   0.14739  3.33958  2.77542  3.23743      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
      4   3.38618  0.13595  3.43760  2.79470      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
      5   3.04773  2.56910  3.09744  0.18541      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
      6   3.38618  0.13595  3.43760  2.79470      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
      7   3.04773  2.56910  3.09744  0.18541      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
      8   3.38618  0.13595  3.43760  2.79470      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
      9   2.91894  3.54631  0.12180  3.44673      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     10   0.14739  3.33958  2.77542  3.23743     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     11   3.38618  0.13595  3.43760  2.79470     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     12   0.14739  3.33958  2.77542  3.23743     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     13   0.14739  3.33958  2.77542  3.23743     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     14   3.38618  0.13595  3.43760  2.79470     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     15   2.91894  3.54631  0.12180  3.44673     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     16   2.91894  3.54631  0.12180  3.44673     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     17   0.14739  3.33958  2.77542  3.23743     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     18   3.04773  2.56910  3.09744  0.18541     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     19   0.14739  3.33958  2.77542  3.23743     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     20   3.04773  2.56910  3.09744  0.18541     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     21   3.38618  0.13595  3.43760  2.79470     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     22   3.04773  2.56910  3.09744  0.18541     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     23   3.38618  0.13595  3.43760  2.79470     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     24   2.91894  3.54631  0.12180  3.44673     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     25   2.91894  3.54631  0.12180  3.44673     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     26   3.38618  0.13595  3.43760  2.79470     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     27   3.04773  2.56910  3.09744  0.18541     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     28   3.38618  0.13595  3.43760  2.79470     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     29   3.04773  2.56910  3.09744  0.18541     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     30   3.38618  0.13595  3.43760  2.79470     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     31   2.91894  3.54631  0.12180  3.44673     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     32   3.38618  0.13595  3.43760  2.79470     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     33   0.14739  3.33958  2.77542  3.23743     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     34   3.04773  2.56910  3.09744  0.18541     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     35   3.38618  0.13595  3.43760  2.79470     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     36   2.91894  3.54631  0.12180  3.44673     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     37   0.14739  3.33958  2.77542  3.23743     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     38   3.04773  2.56910  3.09744  0.18541     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     39   2.91894  3.54631  0.12180  3.44673     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     40   0.14739  3.33958  2.77542  3.23743     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     41   0.14739  3.33958  2.77542  3.23743     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     42   2.91894  3.54631  0.12180  3.44673     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     43   0.14739  3.33958  2.77542  3.23743     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     44   0.14739  3.33958  2.77542  3.23743     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     45   3.38618  0.13595  3.43760  2.79470     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01905  3.96996        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_elevenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:15:08 2012
NSEQ  6
EFFN  3.249023
CKSUM 1930426942
STATS LOCAL MSV       -8.0932  0.71932
STATS LOCAL VITERBI   -7.5450  0.71932
STATS LOCAL FORWARD   -4.0595  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27768  1.39135  1.44912  1.43632
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  0.00000        *
      1   3.06457  2.57984  3.11364  0.18260      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
      2   2.93080  3.56347  0.11985  3.46564      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
      3   0.14509  3.35639  2.78639  3.25580      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
      4   3.40558  0.13354  3.45619  2.80891      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
      5   3.06457  2.57984  3.11364  0.18260      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
      6   3.40558  0.13354  3.45619  2.80891      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
      7   3.06457  2.57984  3.11364  0.18260      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
      8   3.40558  0.13354  3.45619  2.80891      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
      9   2.93080  3.56347  0.11985  3.46564      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     10   0.14509  3.35639  2.78639  3.25580     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     11   3.40558  0.13354  3.45619  2.80891     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     12   0.14509  3.35639  2.78639  3.25580     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     13   0.14509  3.35639  2.78639  3.25580     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     14   3.40558  0.13354  3.45619  2.80891     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     15   2.93080  3.56347  0.11985  3.46564     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     16   2.93080  3.56347  0.11985  3.46564     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     17   0.14509  3.35639  2.78639  3.25580     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     18   3.06457  2.57984  3.11364  0.18260     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     19   0.14509  3.35639  2.78639  3.25580     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     20   3.06457  2.57984  3.11364  0.18260     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     21   3.40558  0.13354  3.45619  2.80891     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     22   3.06457  2.57984  3.11364  0.18260     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     23   0.14509  3.35639  2.78639  3.25580     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     24   2.93080  3.56347  0.11985  3.46564     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     25   2.93080  3.56347  0.11985  3.46564     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     26   3.40558  0.13354  3.45619  2.80891     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     27   3.06457  2.57984  3.11364  0.18260     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     28   3.40558  0.13354  3.45619  2.80891     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     29   3.06457  2.57984  3.11364  0.18260     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     30   3.06457  2.57984  3.11364  0.18260     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     31   2.93080  3.56347  0.11985  3.46564     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     32   3.40558  0.13354  3.45619  2.80891     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     33   0.14509  3.35639  2.78639  3.25580     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     34   3.06457  2.57984  3.11364  0.18260     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     35   3.40558  0.13354  3.45619  2.80891     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     36   2.93080  3.56347  0.11985  3.46564     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     37   0.14509  3.35639  2.78639  3.25580     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     38   3.06457  2.57984  3.11364  0.18260     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     39   2.93080  3.56347  0.11985  3.46564     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     40   0.14509  3.35639  2.78639  3.25580     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     41   0.14509  3.35639  2.78639  3.25580     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     42   2.93080  3.56347  0.11985  3.46564     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     43   0.14509  3.35639  2.78639  3.25580     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     44   0.14509  3.35639  2.78639  3.25580     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     45   3.40558  0.13354  3.45619  2.80891     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01887  3.97950        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_elevenc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:15:15 2012
NSEQ  4
EFFN  3.175781
CKSUM 329736315
STATS LOCAL MSV       -8.1238  0.71932
STATS LOCAL VITERBI   -7.6526  0.71932
STATS LOCAL FORWARD   -3.7764  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34425  1.15438  1.45439  1.65827
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  0.00000        *
      1   3.37748  0.13704  3.42926  2.78832      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      2   2.91360  3.53861  0.12268  3.43825      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      3   0.14843  3.33206  2.77050  3.22920      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      4   3.37748  0.13704  3.42926  2.78832      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      5   3.04021  2.56430  3.09020  0.18668      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      6   3.37748  0.13704  3.42926  2.78832      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      7   3.04021  2.56430  3.09020  0.18668      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      8   3.37748  0.13704  3.42926  2.78832      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      9   2.91360  3.53861  0.12268  3.43825      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     10   0.14843  3.33206  2.77050  3.22920     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     11   3.37748  0.13704  3.42926  2.78832     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     12   0.14843  3.33206  2.77050  3.22920     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     13   0.14843  3.33206  2.77050  3.22920     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     14   3.37748  0.13704  3.42926  2.78832     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     15   2.91360  3.53861  0.12268  3.43825     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     16   2.91360  3.53861  0.12268  3.43825     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     17   0.14843  3.33206  2.77050  3.22920     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     18   3.04021  2.56430  3.09020  0.18668     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     19   0.14843  3.33206  2.77050  3.22920     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     20   3.04021  2.56430  3.09020  0.18668     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     21   3.37748  0.13704  3.42926  2.78832     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     22   3.37748  0.13704  3.42926  2.78832     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     23   3.37748  0.13704  3.42926  2.78832     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     24   2.91360  3.53861  0.12268  3.43825     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     25   2.91360  3.53861  0.12268  3.43825     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     26   3.37748  0.13704  3.42926  2.78832     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     27   3.04021  2.56430  3.09020  0.18668     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     28   3.37748  0.13704  3.42926  2.78832     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     29   3.04021  2.56430  3.09020  0.18668     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     30   3.37748  0.13704  3.42926  2.78832     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     31   2.91360  3.53861  0.12268  3.43825     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     32   3.37748  0.13704  3.42926  2.78832     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     33   0.14843  3.33206  2.77050  3.22920     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     34   3.04021  2.56430  3.09020  0.18668     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     35   3.37748  0.13704  3.42926  2.78832     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     36   2.91360  3.53861  0.12268  3.43825     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     37   0.14843  3.33206  2.77050  3.22920     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     38   3.04021  2.56430  3.09020  0.18668     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     39   2.91360  3.53861  0.12268  3.43825     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     40   0.14843  3.33206  2.77050  3.22920     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     41   0.14843  3.33206  2.77050  3.22920     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     42   2.91360  3.53861  0.12268  3.43825     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     43   0.14843  3.33206  2.77050  3.22920     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     44   0.14843  3.33206  2.77050  3.22920     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     45   3.37748  0.13704  3.42926  2.78832     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01914  3.96571        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_elevend_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:15:21 2012
NSEQ  5
EFFN  3.413086
CKSUM 4236102742
STATS LOCAL MSV       -7.4888  0.71931
STATS LOCAL VITERBI   -7.5745  0.71931
STATS LOCAL FORWARD   -4.1218  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40009  1.35456  1.43150  1.36096
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  0.00000        *
      1   3.11748  2.61349  3.16453  0.17409      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      2   2.96731  3.61661  0.11405  3.52429      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      3   0.13819  3.40877  2.82041  3.31315      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      4   3.46593  0.12636  3.51399  2.85283      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      5   3.11748  2.61349  3.16453  0.17409      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      6   3.46593  0.12636  3.51399  2.85283      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      7   3.11748  2.61349  3.16453  0.17409      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      8   3.46593  0.12636  3.51399  2.85283      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      9   2.96731  3.61661  0.11405  3.52429      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     10   2.96731  3.61661  0.11405  3.52429     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     11   3.46593  0.12636  3.51399  2.85283     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     12   0.13819  3.40877  2.82041  3.31315     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     13   0.13819  3.40877  2.82041  3.31315     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     14   3.46593  0.12636  3.51399  2.85283     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     15   2.96731  3.61661  0.11405  3.52429     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     16   2.96731  3.61661  0.11405  3.52429     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     17   0.13819  3.40877  2.82041  3.31315     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     18   3.11748  2.61349  3.16453  0.17409     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     19   0.13819  3.40877  2.82041  3.31315     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     20   3.11748  2.61349  3.16453  0.17409     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     21   3.46593  0.12636  3.51399  2.85283     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     22   3.11748  2.61349  3.16453  0.17409     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     23   3.11748  2.61349  3.16453  0.17409     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     24   2.10789  0.81520  1.20364  1.99617     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     25   2.96731  3.61661  0.11405  3.52429     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     26   3.46593  0.12636  3.51399  2.85283     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     27   3.11748  2.61349  3.16453  0.17409     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     28   3.46593  0.12636  3.51399  2.85283     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     29   3.11748  2.61349  3.16453  0.17409     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     30   3.11748  2.61349  3.16453  0.17409     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     31   2.96731  3.61661  0.11405  3.52429     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     32   3.46593  0.12636  3.51399  2.85283     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     33   0.13819  3.40877  2.82041  3.31315     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     34   3.11748  2.61349  3.16453  0.17409     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     35   3.46593  0.12636  3.51399  2.85283     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     36   2.96731  3.61661  0.11405  3.52429     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     37   0.13819  3.40877  2.82041  3.31315     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     38   3.11748  2.61349  3.16453  0.17409     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     39   2.96731  3.61661  0.11405  3.52429     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     40   0.13819  3.40877  2.82041  3.31315     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     41   0.13819  3.40877  2.82041  3.31315     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     42   2.96731  3.61661  0.11405  3.52429     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     43   0.13819  3.40877  2.82041  3.31315     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     44   0.13819  3.40877  2.82041  3.31315     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     45   3.46593  0.12636  3.51399  2.85283     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01831  4.00971        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_elevene_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:15:26 2012
NSEQ  2
EFFN  2.000000
CKSUM 1433949084
STATS LOCAL MSV       -7.5231  0.72801
STATS LOCAL VITERBI   -8.1368  0.72801
STATS LOCAL FORWARD   -3.4187  0.72801
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.29217  1.29112  1.49927  1.48250
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   0.23862  2.84929  2.43386  2.70756     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_elevenf_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:15:34 2012
NSEQ  3158
EFFN  3.653196
CKSUM 2420636055
STATS LOCAL MSV       -7.8226  0.71933
STATS LOCAL VITERBI   -7.6855  0.71933
STATS LOCAL FORWARD   -3.9132  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39185  1.23333  1.38511  1.56175
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  0.00000        *
      1   2.57583  0.45001  2.63698  1.53848      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
      2   2.88582  3.63349  0.11775  3.54577      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
      3   0.13788  3.44636  2.77956  3.35604      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
      4   3.54821  0.11728  3.59265  2.91207      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
      5   3.19098  2.66011  3.23517  0.16302      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
      6   3.42986  0.13697  3.40536  2.77390      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
      7   3.09775  2.42630  3.14563  0.19426      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
      8   3.44877  0.13309  3.42268  2.81007      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
      9   3.01623  3.68846  0.10671  3.60382      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     10   2.48283  3.36876  0.17283  3.19955     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     11   3.50423  0.12601  3.55014  2.81999     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     12   0.12934  3.48051  2.86668  3.39184     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     13   0.13749  3.44790  2.78335  3.35766     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     14   3.49938  0.12700  3.54546  2.81022     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     15   2.92829  3.65209  0.11396  3.56553     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     16   2.92829  3.65209  0.11396  3.56553     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     17   0.12934  3.48051  2.86668  3.39184     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     18   3.19098  2.66011  3.23517  0.16302     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     19   0.12934  3.48051  2.86668  3.39184     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     20   3.00669  2.63039  3.15909  0.17909     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     21   3.47468  0.13208  3.52163  2.76138     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     22   3.14563  2.54221  3.19154  0.17774     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     23   2.40428  0.27051  2.83402  2.43148     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     24   3.01623  3.68846  0.10671  3.60382     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     25   2.92872  3.60390  0.11987  3.43317     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     26   3.50426  0.12601  3.55016  2.82005     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     27   3.11209  2.57957  3.08463  0.18160     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     28   3.35857  0.13687  3.41010  2.81184     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     29   2.91314  2.56174  3.10427  0.19399     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     30   3.25253  0.18463  3.30727  2.37201     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     31   2.92597  3.51246  0.12332  3.42391     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     32   3.54821  0.11728  3.59265  2.91207     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     33   0.13749  3.44790  2.78335  3.35766     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     34   3.00658  2.63037  3.15904  0.17910     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     35   3.48190  0.13058  3.52860  2.77550     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     36   2.92829  3.65209  0.11396  3.56553     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     37   0.13762  3.44739  2.78209  3.35712     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     38   3.16097  2.58108  3.20628  0.17267     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     39   2.93744  3.44619  0.13024  3.29028     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     40   0.12934  3.48051  2.86668  3.39184     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     41   0.12934  3.48051  2.86668  3.39184     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     42   2.89162  3.48850  0.12826  3.37134     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     43   0.13762  3.44739  2.78209  3.35712     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     44   0.13812  3.44543  2.77725  3.35505     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
     45   3.50165  0.12654  3.54765  2.81479     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01753  4.05237        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_fivea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:56:00 2012
NSEQ  2
EFFN  2.000000
CKSUM 501771485
STATS LOCAL MSV       -7.3842  0.72813
STATS LOCAL VITERBI   -8.0347  0.72813
STATS LOCAL FORWARD   -3.2361  0.72813
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.29099  1.34237  1.49789  1.42639
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.23862  2.84929  2.43386  2.70756     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_fiveb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:56:11 2012
NSEQ  2
EFFN  2.000000
CKSUM 3891266361
STATS LOCAL MSV       -7.4753  0.72874
STATS LOCAL VITERBI   -8.0224  0.72874
STATS LOCAL FORWARD   -3.8081  0.72874
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.23536  1.43285  1.49047  1.40497
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   0.23862  2.84929  2.43386  2.70756     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.15554  1.00938  2.23102  0.88601     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_fivec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:56:17 2012
NSEQ  2
EFFN  2.000000
CKSUM 173117858
STATS LOCAL MSV       -7.4090  0.72884
STATS LOCAL VITERBI   -8.1631  0.72884
STATS LOCAL FORWARD   -3.4359  0.72884
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33846  1.31931  1.47459  1.42064
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   1.88179  1.10717  1.04597  1.79675     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_fived_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:56:22 2012
NSEQ  5
EFFN  3.315430
CKSUM 2978653859
STATS LOCAL MSV       -8.0586  0.71933
STATS LOCAL VITERBI   -7.5706  0.71933
STATS LOCAL FORWARD   -4.2608  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33912  1.45202  1.52718  1.24939
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  0.00000        *
      1   3.08626  2.59365  3.13451  0.17906      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      2   2.94591  3.58540  0.11742  3.48982      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      3   0.14220  3.37794  2.80041  3.27938      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      4   3.43043  0.13053  3.48000  2.82705      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      5   3.08626  2.59365  3.13451  0.17906      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      6   3.43043  0.13053  3.48000  2.82705      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      7   3.08626  2.59365  3.13451  0.17906      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      8   3.43043  0.13053  3.48000  2.82705      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      9   0.14220  3.37794  2.80041  3.27938      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     10   2.94591  3.58540  0.11742  3.48982     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     11   3.43043  0.13053  3.48000  2.82705     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     12   0.14220  3.37794  2.80041  3.27938     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     13   0.14220  3.37794  2.80041  3.27938     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     14   3.08626  2.59365  3.13451  0.17906     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     15   2.94591  3.58540  0.11742  3.48982     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     16   2.94591  3.58540  0.11742  3.48982     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     17   0.14220  3.37794  2.80041  3.27938     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     18   3.08626  2.59365  3.13451  0.17906     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     19   0.14220  3.37794  2.80041  3.27938     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     20   3.08626  2.59365  3.13451  0.17906     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     21   3.43043  0.13053  3.48000  2.82705     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     22   3.08626  2.59365  3.13451  0.17906     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     23   3.43043  0.13053  3.48000  2.82705     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     24   3.08626  2.59365  3.13451  0.17906     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     25   2.94591  3.58540  0.11742  3.48982     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     26   3.43043  0.13053  3.48000  2.82705     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     27   3.08626  2.59365  3.13451  0.17906     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     28   3.43043  0.13053  3.48000  2.82705     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     29   3.08626  2.59365  3.13451  0.17906     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     30   3.08626  2.59365  3.13451  0.17906     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     31   2.94591  3.58540  0.11742  3.48982     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     32   3.43043  0.13053  3.48000  2.82705     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     33   0.14220  3.37794  2.80041  3.27938     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     34   3.08626  2.59365  3.13451  0.17906     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     35   3.08626  2.59365  3.13451  0.17906     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     36   2.94591  3.58540  0.11742  3.48982     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     37   0.14220  3.37794  2.80041  3.27938     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     38   3.08626  2.59365  3.13451  0.17906     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     39   2.94591  3.58540  0.11742  3.48982     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     40   0.14220  3.37794  2.80041  3.27938     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     41   0.14220  3.37794  2.80041  3.27938     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     42   2.94591  3.58540  0.11742  3.48982     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     43   0.14220  3.37794  2.80041  3.27938     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     44   0.14220  3.37794  2.80041  3.27938     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     45   3.43043  0.13053  3.48000  2.82705     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01864  3.99184        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_fivee_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:56:29 2012
NSEQ  2
EFFN  2.000000
CKSUM 1491573942
STATS LOCAL MSV       -7.4671  0.72818
STATS LOCAL VITERBI   -8.1834  0.72818
STATS LOCAL FORWARD   -3.2586  0.72818
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.19248  1.28747  1.64165  1.48324
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   0.23862  2.84929  2.43386  2.70756     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.23862  2.84929  2.43386  2.70756     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_fivef_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:56:33 2012
NSEQ  2
EFFN  2.000000
CKSUM 984617909
STATS LOCAL MSV       -7.5814  0.72836
STATS LOCAL VITERBI   -8.2385  0.72836
STATS LOCAL FORWARD   -3.3826  0.72836
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34307  1.39264  1.49794  1.32070
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   0.23862  2.84929  2.43386  2.70756     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.57915  2.25909  2.64442  0.28946     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.57915  2.25909  2.64442  0.28946     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_fiveg_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:56:41 2012
NSEQ  2
EFFN  2.000000
CKSUM 3312256803
STATS LOCAL MSV       -7.4483  0.72806
STATS LOCAL VITERBI   -8.3980  0.72806
STATS LOCAL FORWARD   -3.4369  0.72806
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.45962  1.33786  1.37657  1.37506
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.53331  3.02441  0.20344  2.88069     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_fiveh_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:56:46 2012
NSEQ  3
EFFN  3.000000
CKSUM 4174493381
STATS LOCAL MSV       -8.1279  0.72052
STATS LOCAL VITERBI   -7.7403  0.72052
STATS LOCAL FORWARD   -4.4656  0.72052
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40219  1.52691  1.37723  1.25717
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.97980  2.52563  3.03204  0.19727      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   0.15719  3.27118  2.73043  3.16274     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   0.15719  3.27118  2.73043  3.16274     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   3.30705  0.14631  3.36166  2.73626     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.97980  2.52563  3.03204  0.19727     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.97980  2.52563  3.03204  0.19727     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.97980  2.52563  3.03204  0.19727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.97980  2.52563  3.03204  0.19727     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   0.15719  3.27118  2.73043  3.16274     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.86982  3.47591  0.13017  3.36931     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_fivei_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:56:52 2012
NSEQ  210
EFFN  4.367523
CKSUM 2838594260
STATS LOCAL MSV       -7.0126  0.71932
STATS LOCAL VITERBI   -7.5941  0.71932
STATS LOCAL FORWARD   -4.2002  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40037  1.31676  1.37571  1.45743
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  0.00000        *
      1   2.06832  0.85930  1.87569  1.21438      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
      2   2.21347  3.41443  0.19689  3.31032      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
      3   0.10951  3.66353  2.98433  3.59304      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
      4   3.75517  0.09755  3.79001  3.05864      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
      5   3.38437  2.78305  3.42094  0.13746      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
      6   3.75517  0.09755  3.79001  3.05864      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
      7   3.20676  2.31317  3.25195  0.19618      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
      8   3.66275  0.11496  3.70176  2.84291      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
      9   2.49528  3.58698  0.15135  3.49677      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     10   0.89228  2.68555  0.81279  2.54492     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     11   3.75517  0.09755  3.79001  3.05864     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     12   0.10951  3.66353  2.98433  3.59304     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     13   0.10951  3.66353  2.98433  3.59304     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     14   2.82816  1.56588  2.88915  0.39104     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     15   2.95597  3.80384  0.10338  3.73372     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     16   2.85847  3.54253  0.12043  3.60575     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     17   0.10951  3.66353  2.98433  3.59304     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     18   3.38437  2.78305  3.42094  0.13746     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     19   0.10951  3.66353  2.98433  3.59304     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     20   3.38437  2.78305  3.42094  0.13746     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     21   3.75517  0.09755  3.79001  3.05864     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     22   3.38437  2.78305  3.42094  0.13746     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     23   2.22540  0.66248  2.48298  1.22789     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     24   3.13660  3.86684  0.09067  3.80190     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     25   3.04672  3.52420  0.11688  3.40166     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     26   3.75517  0.09755  3.79001  3.05864     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     27   3.38437  2.78305  3.42094  0.13746     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     28   3.75517  0.09755  3.79001  3.05864     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     29   3.34206  2.65762  3.38062  0.15025     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     30   2.92715  0.35120  2.99176  1.64813     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     31   3.13660  3.86684  0.09067  3.80190     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     32   3.75517  0.09755  3.79001  3.05864     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     33   0.12502  3.60124  2.80014  3.52587     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     34   3.38437  2.78305  3.42094  0.13746     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     35   3.67538  0.11251  3.71382  2.87022     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     36   3.13660  3.86684  0.09067  3.80190     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     37   0.10951  3.66353  2.98433  3.59304     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     38   3.38437  2.78305  3.42094  0.13746     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     39   3.13660  3.86684  0.09067  3.80190     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     40   0.10951  3.66353  2.98433  3.59304     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     41   0.10951  3.66353  2.98433  3.59304     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     42   3.13660  3.86684  0.09067  3.80190     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     43   0.10951  3.66353  2.98433  3.59304     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     44   1.34862  2.84454  0.48510  2.70893     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
     45   3.67026  0.11350  3.70893  2.85909     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01558  4.16938        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_fivej_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:56:56 2012
NSEQ  33
EFFN  3.258911
CKSUM 3363897177
STATS LOCAL MSV       -7.9849  0.71934
STATS LOCAL VITERBI   -7.6114  0.71934
STATS LOCAL FORWARD   -4.3755  0.71934
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47461  1.45701  1.31474  1.31061
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  0.00000        *
      1   3.06783  2.58191  3.11677  0.18206      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
      2   2.93308  3.56677  0.11948  3.46928      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
      3   0.14465  3.35963  2.78850  3.25935      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
      4   3.40931  0.13308  3.45978  2.81164      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
      5   3.06783  2.58191  3.11677  0.18206      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
      6   3.40931  0.13308  3.45978  2.81164      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
      7   3.40931  0.13308  3.45978  2.81164      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
      8   3.06783  2.58191  3.11677  0.18206      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
      9   2.93308  3.56677  0.11948  3.46928      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     10   2.93308  3.56677  0.11948  3.46928     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     11   3.40931  0.13308  3.45978  2.81164     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     12   0.14465  3.35963  2.78850  3.25935     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     13   0.14465  3.35963  2.78850  3.25935     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     14   3.06783  2.58191  3.11677  0.18206     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     15   2.93308  3.56677  0.11948  3.46928     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     16   2.93308  3.56677  0.11948  3.46928     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     17   0.14465  3.35963  2.78850  3.25935     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     18   3.06783  2.58191  3.11677  0.18206     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     19   0.14465  3.35963  2.78850  3.25935     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     20   3.06783  2.58191  3.11677  0.18206     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     21   3.40931  0.13308  3.45978  2.81164     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     22   3.06783  2.58191  3.11677  0.18206     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     23   3.06783  2.58191  3.11677  0.18206     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     24   2.93308  3.56677  0.11948  3.46928     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     25   2.93308  3.56677  0.11948  3.46928     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     26   3.40931  0.13308  3.45978  2.81164     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     27   3.06783  2.58191  3.11677  0.18206     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     28   3.40931  0.13308  3.45978  2.81164     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     29   3.06783  2.58191  3.11677  0.18206     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     30   3.40931  0.13308  3.45978  2.81164     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     31   2.93308  3.56677  0.11948  3.46928     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     32   3.06783  2.58191  3.11677  0.18206     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     33   2.93308  3.56677  0.11948  3.46928     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     34   3.06783  2.58191  3.11677  0.18206     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     35   3.40931  0.13308  3.45978  2.81164     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     36   2.93308  3.56677  0.11948  3.46928     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     37   0.14465  3.35963  2.78850  3.25935     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     38   3.06783  2.58191  3.11677  0.18206     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     39   2.93308  3.56677  0.11948  3.46928     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     40   0.14465  3.35963  2.78850  3.25935     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     41   0.14465  3.35963  2.78850  3.25935     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     42   2.93308  3.56677  0.11948  3.46928     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     43   0.14465  3.35963  2.78850  3.25935     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     44   0.14465  3.35963  2.78850  3.25935     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
     45   3.40931  0.13308  3.45978  2.81164     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01884  3.98135        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_fivek_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:57:01 2012
NSEQ  50
EFFN  3.543091
CKSUM 2127064808
STATS LOCAL MSV       -7.5080  0.71932
STATS LOCAL VITERBI   -7.6308  0.71932
STATS LOCAL FORWARD   -3.8861  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39994  1.20823  1.38023  1.59384
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  0.00000        *
      1   2.86575  0.31993  2.93116  1.81078      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
      2   2.99441  3.65633  0.10993  3.56823      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
      3   0.13323  3.44830  2.84594  3.35649      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
      4   3.51133  0.12125  3.55740  2.88560      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
      5   3.15782  2.63909  3.20331  0.16791      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
      6   3.51133  0.12125  3.55740  2.88560      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
      7   3.15782  2.63909  3.20331  0.16791      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
      8   3.51133  0.12125  3.55740  2.88560      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
      9   2.99441  3.65633  0.10993  3.56823      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     10   2.99441  3.65633  0.10993  3.56823     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     11   3.51133  0.12125  3.55740  2.88560     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     12   0.13323  3.44830  2.84594  3.35649     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     13   0.13323  3.44830  2.84594  3.35649     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     14   3.51133  0.12125  3.55740  2.88560     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     15   2.99441  3.65633  0.10993  3.56823     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     16   2.99441  3.65633  0.10993  3.56823     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     17   0.13323  3.44830  2.84594  3.35649     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     18   3.15782  2.63909  3.20331  0.16791     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     19   0.13323  3.44830  2.84594  3.35649     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     20   3.15782  2.63909  3.20331  0.16791     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     21   3.51133  0.12125  3.55740  2.88560     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     22   3.15782  2.63909  3.20331  0.16791     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     23   3.51133  0.12125  3.55740  2.88560     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     24   2.99441  3.65633  0.10993  3.56823     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     25   2.99441  3.65633  0.10993  3.56823     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     26   3.51133  0.12125  3.55740  2.88560     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     27   2.76636  1.79629  2.82691  0.33968     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     28   3.51133  0.12125  3.55740  2.88560     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     29   3.15782  2.63909  3.20331  0.16791     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     30   3.35467  0.15484  3.40598  2.58554     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     31   2.46606  3.38987  0.16971  3.28447     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     32   3.23974  0.18362  3.29488  2.39143     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     33   3.23974  0.18362  3.29488  2.39143     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     34   0.16997  3.24763  2.75938  2.91677     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     35   3.24462  0.16325  3.04612  2.74743     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     36   2.99441  3.65633  0.10993  3.56823     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     37   0.13323  3.44830  2.84594  3.35649     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     38   3.15782  2.63909  3.20331  0.16791     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     39   2.99441  3.65633  0.10993  3.56823     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     40   0.13323  3.44830  2.84594  3.35649     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     41   0.13323  3.44830  2.84594  3.35649     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     42   2.99441  3.65633  0.10993  3.56823     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     43   0.13323  3.44830  2.84594  3.35649     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     44   0.13323  3.44830  2.84594  3.35649     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
     45   2.62759  1.52536  2.69282  0.44236     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01788  4.03302        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_ninea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:12:28 2012
NSEQ  18
EFFN  3.229980
CKSUM 3069628549
STATS LOCAL MSV       -8.0656  0.71932
STATS LOCAL VITERBI   -7.7526  0.71932
STATS LOCAL FORWARD   -4.0010  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40657  1.32294  1.38185  1.43736
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  0.00000        *
      1   3.39834  0.13443  3.44926  2.80362      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
      2   2.92638  3.55708  0.12057  3.45859      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
      3   0.14594  3.35012  2.78230  3.24895      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
      4   3.39834  0.13443  3.44926  2.80362      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
      5   3.05828  2.57583  3.10759  0.18364      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
      6   3.39834  0.13443  3.44926  2.80362      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
      7   3.05828  2.57583  3.10759  0.18364      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
      8   3.05828  2.57583  3.10759  0.18364      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
      9   2.92638  3.55708  0.12057  3.45859      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     10   2.92638  3.55708  0.12057  3.45859     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     11   3.39834  0.13443  3.44926  2.80362     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     12   0.14594  3.35012  2.78230  3.24895     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     13   0.14594  3.35012  2.78230  3.24895     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     14   3.39834  0.13443  3.44926  2.80362     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     15   2.92638  3.55708  0.12057  3.45859     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     16   2.92638  3.55708  0.12057  3.45859     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     17   0.14594  3.35012  2.78230  3.24895     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     18   3.05828  2.57583  3.10759  0.18364     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     19   0.14594  3.35012  2.78230  3.24895     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     20   3.05828  2.57583  3.10759  0.18364     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     21   3.39834  0.13443  3.44926  2.80362     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     22   3.05828  2.57583  3.10759  0.18364     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     23   3.05828  2.57583  3.10759  0.18364     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     24   2.92638  3.55708  0.12057  3.45859     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     25   2.92638  3.55708  0.12057  3.45859     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     26   3.39834  0.13443  3.44926  2.80362     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     27   3.05828  2.57583  3.10759  0.18364     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     28   3.39834  0.13443  3.44926  2.80362     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     29   3.05828  2.57583  3.10759  0.18364     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     30   3.39834  0.13443  3.44926  2.80362     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     31   2.92638  3.55708  0.12057  3.45859     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     32   3.39834  0.13443  3.44926  2.80362     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     33   0.14594  3.35012  2.78230  3.24895     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     34   3.05828  2.57583  3.10759  0.18364     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     35   3.39834  0.13443  3.44926  2.80362     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     36   2.92638  3.55708  0.12057  3.45859     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     37   0.14594  3.35012  2.78230  3.24895     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     38   3.05828  2.57583  3.10759  0.18364     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     39   2.92638  3.55708  0.12057  3.45859     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     40   0.14594  3.35012  2.78230  3.24895     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     41   0.14594  3.35012  2.78230  3.24895     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     42   2.92638  3.55708  0.12057  3.45859     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     43   0.14594  3.35012  2.78230  3.24895     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     44   0.14594  3.35012  2.78230  3.24895     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     45   3.39834  0.13443  3.44926  2.80362     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01894  3.97593        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_nineb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:12:35 2012
NSEQ  5
EFFN  3.227539
CKSUM 4226317241
STATS LOCAL MSV       -7.9655  0.71933
STATS LOCAL VITERBI   -7.5560  0.71933
STATS LOCAL FORWARD   -4.1456  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40657  1.32285  1.38184  1.43748
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  0.00000        *
      1   3.39741  0.13455  3.44837  2.80294      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
      2   2.92582  3.55626  0.12066  3.45768      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
      3   0.14605  3.34931  2.78177  3.24806      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
      4   3.39741  0.13455  3.44837  2.80294      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
      5   3.05748  2.57532  3.10682  0.18378      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
      6   3.39741  0.13455  3.44837  2.80294      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
      7   3.05748  2.57532  3.10682  0.18378      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
      8   3.39741  0.13455  3.44837  2.80294      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
      9   2.92582  3.55626  0.12066  3.45768      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     10   2.92582  3.55626  0.12066  3.45768     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     11   3.39741  0.13455  3.44837  2.80294     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     12   0.14605  3.34931  2.78177  3.24806     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     13   0.14605  3.34931  2.78177  3.24806     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     14   3.39741  0.13455  3.44837  2.80294     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     15   2.92582  3.55626  0.12066  3.45768     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     16   2.92582  3.55626  0.12066  3.45768     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     17   0.14605  3.34931  2.78177  3.24806     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     18   3.05748  2.57532  3.10682  0.18378     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     19   0.14605  3.34931  2.78177  3.24806     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     20   3.05748  2.57532  3.10682  0.18378     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     21   3.39741  0.13455  3.44837  2.80294     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     22   3.05748  2.57532  3.10682  0.18378     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     23   3.05748  2.57532  3.10682  0.18378     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     24   2.92582  3.55626  0.12066  3.45768     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     25   2.92582  3.55626  0.12066  3.45768     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     26   3.39741  0.13455  3.44837  2.80294     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     27   3.05748  2.57532  3.10682  0.18378     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     28   3.39741  0.13455  3.44837  2.80294     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     29   3.05748  2.57532  3.10682  0.18378     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     30   3.05748  2.57532  3.10682  0.18378     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     31   2.92582  3.55626  0.12066  3.45768     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     32   3.39741  0.13455  3.44837  2.80294     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     33   0.14605  3.34931  2.78177  3.24806     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     34   3.05748  2.57532  3.10682  0.18378     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     35   3.39741  0.13455  3.44837  2.80294     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     36   2.92582  3.55626  0.12066  3.45768     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     37   0.14605  3.34931  2.78177  3.24806     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     38   3.05748  2.57532  3.10682  0.18378     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     39   2.92582  3.55626  0.12066  3.45768     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     40   0.14605  3.34931  2.78177  3.24806     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     41   0.14605  3.34931  2.78177  3.24806     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     42   2.92582  3.55626  0.12066  3.45768     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     43   0.14605  3.34931  2.78177  3.24806     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     44   0.14605  3.34931  2.78177  3.24806     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     45   3.39741  0.13455  3.44837  2.80294     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01895  3.97547        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_ninec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:13:12 2012
NSEQ  8
EFFN  3.324219
CKSUM 3298544435
STATS LOCAL MSV       -8.1167  0.71931
STATS LOCAL VITERBI   -7.6959  0.71931
STATS LOCAL FORWARD   -3.8829  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40353  1.30597  1.37945  1.46255
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  0.00000        *
      1   3.43368  0.13014  3.48311  2.82941      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      2   2.94787  3.58825  0.11710  3.49298      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      3   0.14183  3.38075  2.80224  3.28247      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      4   3.43368  0.13014  3.48311  2.82941      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      5   3.08911  2.59546  3.13724  0.17860      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      6   3.43368  0.13014  3.48311  2.82941      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      7   3.08911  2.59546  3.13724  0.17860      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      8   3.43368  0.13014  3.48311  2.82941      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      9   2.94787  3.58825  0.11710  3.49298      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     10   2.94787  3.58825  0.11710  3.49298     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     11   3.43368  0.13014  3.48311  2.82941     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     12   0.14183  3.38075  2.80224  3.28247     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     13   0.14183  3.38075  2.80224  3.28247     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     14   3.43368  0.13014  3.48311  2.82941     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     15   2.94787  3.58825  0.11710  3.49298     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     16   2.94787  3.58825  0.11710  3.49298     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     17   0.14183  3.38075  2.80224  3.28247     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     18   3.08911  2.59546  3.13724  0.17860     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     19   0.14183  3.38075  2.80224  3.28247     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     20   3.08911  2.59546  3.13724  0.17860     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     21   3.43368  0.13014  3.48311  2.82941     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     22   3.08911  2.59546  3.13724  0.17860     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     23   2.46372  1.24860  2.53351  0.60039     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     24   2.94787  3.58825  0.11710  3.49298     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     25   2.94787  3.58825  0.11710  3.49298     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     26   3.08911  2.59546  3.13724  0.17860     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     27   3.08911  2.59546  3.13724  0.17860     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     28   3.43368  0.13014  3.48311  2.82941     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     29   3.08911  2.59546  3.13724  0.17860     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     30   3.43368  0.13014  3.48311  2.82941     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     31   2.94787  3.58825  0.11710  3.49298     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     32   3.43368  0.13014  3.48311  2.82941     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     33   0.14183  3.38075  2.80224  3.28247     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     34   3.08911  2.59546  3.13724  0.17860     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     35   3.43368  0.13014  3.48311  2.82941     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     36   2.94787  3.58825  0.11710  3.49298     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     37   0.14183  3.38075  2.80224  3.28247     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     38   3.08911  2.59546  3.13724  0.17860     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     39   2.94787  3.58825  0.11710  3.49298     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     40   0.14183  3.38075  2.80224  3.28247     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     41   0.14183  3.38075  2.80224  3.28247     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     42   2.94787  3.58825  0.11710  3.49298     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     43   0.14183  3.38075  2.80224  3.28247     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     44   0.14183  3.38075  2.80224  3.28247     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     45   3.43368  0.13014  3.48311  2.82941     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01861  3.99346        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_nined_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:13:19 2012
NSEQ  2
EFFN  2.000000
CKSUM 1082156861
STATS LOCAL MSV       -7.3499  0.72787
STATS LOCAL VITERBI   -8.1292  0.72787
STATS LOCAL FORWARD   -3.4541  0.72787
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.45932  1.34452  1.31900  1.42905
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_ninee_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:13:26 2012
NSEQ  6
EFFN  3.231445
CKSUM 4098161730
STATS LOCAL MSV       -8.0790  0.71932
STATS LOCAL VITERBI   -7.6106  0.71932
STATS LOCAL FORWARD   -4.0689  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40654  1.32502  1.38182  1.43509
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  0.00000        *
      1   3.05877  2.57614  3.10806  0.18356      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
      2   2.92673  3.55757  0.12052  3.45913      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
      3   0.14587  3.35060  2.78262  3.24948      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
      4   3.39890  0.13436  3.44980  2.80403      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
      5   3.05877  2.57614  3.10806  0.18356      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
      6   3.39890  0.13436  3.44980  2.80403      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
      7   3.05877  2.57614  3.10806  0.18356      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
      8   3.39890  0.13436  3.44980  2.80403      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
      9   2.92673  3.55757  0.12052  3.45913      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     10   2.92673  3.55757  0.12052  3.45913     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     11   3.39890  0.13436  3.44980  2.80403     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     12   0.14587  3.35060  2.78262  3.24948     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     13   0.14587  3.35060  2.78262  3.24948     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     14   3.39890  0.13436  3.44980  2.80403     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     15   2.92673  3.55757  0.12052  3.45913     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     16   2.92673  3.55757  0.12052  3.45913     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     17   0.14587  3.35060  2.78262  3.24948     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     18   3.05877  2.57614  3.10806  0.18356     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     19   0.14587  3.35060  2.78262  3.24948     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     20   3.05877  2.57614  3.10806  0.18356     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     21   3.39890  0.13436  3.44980  2.80403     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     22   3.05877  2.57614  3.10806  0.18356     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     23   3.39890  0.13436  3.44980  2.80403     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     24   2.92673  3.55757  0.12052  3.45913     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     25   2.92673  3.55757  0.12052  3.45913     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     26   3.39890  0.13436  3.44980  2.80403     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     27   3.05877  2.57614  3.10806  0.18356     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     28   3.39890  0.13436  3.44980  2.80403     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     29   3.05877  2.57614  3.10806  0.18356     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     30   3.05877  2.57614  3.10806  0.18356     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     31   2.92673  3.55757  0.12052  3.45913     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     32   3.39890  0.13436  3.44980  2.80403     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     33   0.14587  3.35060  2.78262  3.24948     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     34   3.05877  2.57614  3.10806  0.18356     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     35   3.39890  0.13436  3.44980  2.80403     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     36   2.92673  3.55757  0.12052  3.45913     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     37   0.14587  3.35060  2.78262  3.24948     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     38   3.05877  2.57614  3.10806  0.18356     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     39   2.92673  3.55757  0.12052  3.45913     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     40   0.14587  3.35060  2.78262  3.24948     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     41   0.14587  3.35060  2.78262  3.24948     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     42   2.92673  3.55757  0.12052  3.45913     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     43   0.14587  3.35060  2.78262  3.24948     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     44   0.14587  3.35060  2.78262  3.24948     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     45   3.39890  0.13436  3.44980  2.80403     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01893  3.97621        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_ninef_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:13:31 2012
NSEQ  10
EFFN  3.325195
CKSUM 4174405568
STATS LOCAL MSV       -8.2243  0.71932
STATS LOCAL VITERBI   -7.7459  0.71932
STATS LOCAL FORWARD   -3.8937  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.37952  1.26100  1.37730  1.54801
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  0.00000        *
      1   0.97492  2.14294  2.15833  0.94174      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      2   2.94809  3.58857  0.11707  3.49333      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      3   0.14179  3.38107  2.80245  3.28281      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      4   3.43404  0.13010  3.48346  2.82967      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      5   3.08942  2.59566  3.13755  0.17855      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      6   3.43404  0.13010  3.48346  2.82967      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      7   3.08942  2.59566  3.13755  0.17855      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      8   3.43404  0.13010  3.48346  2.82967      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      9   2.94809  3.58857  0.11707  3.49333      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     10   2.94809  3.58857  0.11707  3.49333     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     11   3.43404  0.13010  3.48346  2.82967     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     12   0.14179  3.38107  2.80245  3.28281     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     13   0.14179  3.38107  2.80245  3.28281     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     14   3.43404  0.13010  3.48346  2.82967     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     15   2.94809  3.58857  0.11707  3.49333     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     16   2.94809  3.58857  0.11707  3.49333     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     17   0.14179  3.38107  2.80245  3.28281     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     18   3.08942  2.59566  3.13755  0.17855     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     19   0.14179  3.38107  2.80245  3.28281     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     20   3.08942  2.59566  3.13755  0.17855     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     21   3.43404  0.13010  3.48346  2.82967     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     22   3.08942  2.59566  3.13755  0.17855     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     23   3.43404  0.13010  3.48346  2.82967     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     24   2.94809  3.58857  0.11707  3.49333     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     25   2.94809  3.58857  0.11707  3.49333     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     26   3.43404  0.13010  3.48346  2.82967     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     27   3.08942  2.59566  3.13755  0.17855     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     28   3.43404  0.13010  3.48346  2.82967     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     29   3.08942  2.59566  3.13755  0.17855     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     30   3.43404  0.13010  3.48346  2.82967     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     31   2.94809  3.58857  0.11707  3.49333     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     32   3.43404  0.13010  3.48346  2.82967     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     33   0.14179  3.38107  2.80245  3.28281     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     34   3.08942  2.59566  3.13755  0.17855     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     35   3.43404  0.13010  3.48346  2.82967     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     36   2.94809  3.58857  0.11707  3.49333     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     37   0.14179  3.38107  2.80245  3.28281     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     38   3.08942  2.59566  3.13755  0.17855     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     39   2.94809  3.58857  0.11707  3.49333     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     40   0.14179  3.38107  2.80245  3.28281     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     41   0.14179  3.38107  2.80245  3.28281     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     42   2.94809  3.58857  0.11707  3.49333     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     43   0.14179  3.38107  2.80245  3.28281     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     44   0.14179  3.38107  2.80245  3.28281     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     45   3.43404  0.13010  3.48346  2.82967     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01860  3.99364        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_nineg_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:13:36 2012
NSEQ  25
EFFN  3.213501
CKSUM 1199603924
STATS LOCAL MSV       -8.0844  0.71932
STATS LOCAL VITERBI   -7.5542  0.71932
STATS LOCAL FORWARD   -4.1984  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34047  1.32612  1.38036  1.50831
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  0.00000        *
      1   3.39204  0.13522  3.44322  2.79900      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
      2   2.92253  3.55151  0.12120  3.45245      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
      3   0.14669  3.34466  2.77874  3.24298      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
      4   3.39204  0.13522  3.44322  2.79900      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
      5   3.05282  2.57235  3.10233  0.18456      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
      6   3.39204  0.13522  3.44322  2.79900      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
      7   3.05282  2.57235  3.10233  0.18456      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
      8   3.39204  0.13522  3.44322  2.79900      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
      9   2.92253  3.55151  0.12120  3.45245      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     10   2.92253  3.55151  0.12120  3.45245     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     11   3.39204  0.13522  3.44322  2.79900     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     12   0.14669  3.34466  2.77874  3.24298     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     13   0.14669  3.34466  2.77874  3.24298     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     14   3.39204  0.13522  3.44322  2.79900     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     15   2.92253  3.55151  0.12120  3.45245     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     16   2.92253  3.55151  0.12120  3.45245     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     17   0.14669  3.34466  2.77874  3.24298     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     18   3.05282  2.57235  3.10233  0.18456     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     19   0.14669  3.34466  2.77874  3.24298     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     20   3.05282  2.57235  3.10233  0.18456     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     21   3.39204  0.13522  3.44322  2.79900     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     22   3.05282  2.57235  3.10233  0.18456     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     23   0.14669  3.34466  2.77874  3.24298     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     24   2.92253  3.55151  0.12120  3.45245     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     25   2.92253  3.55151  0.12120  3.45245     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     26   3.39204  0.13522  3.44322  2.79900     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     27   3.05282  2.57235  3.10233  0.18456     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     28   3.39204  0.13522  3.44322  2.79900     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     29   3.05282  2.57235  3.10233  0.18456     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     30   3.05282  2.57235  3.10233  0.18456     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     31   2.92253  3.55151  0.12120  3.45245     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     32   3.39204  0.13522  3.44322  2.79900     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     33   0.14669  3.34466  2.77874  3.24298     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     34   3.05282  2.57235  3.10233  0.18456     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     35   3.39204  0.13522  3.44322  2.79900     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     36   2.92253  3.55151  0.12120  3.45245     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     37   0.14669  3.34466  2.77874  3.24298     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     38   3.05282  2.57235  3.10233  0.18456     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     39   2.92253  3.55151  0.12120  3.45245     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     40   0.14669  3.34466  2.77874  3.24298     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     41   0.14669  3.34466  2.77874  3.24298     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     42   2.92253  3.55151  0.12120  3.45245     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     43   0.14669  3.34466  2.77874  3.24298     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     44   0.14669  3.34466  2.77874  3.24298     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
     45   3.39204  0.13522  3.44322  2.79900     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01900  3.97284        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_nineh_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:13:41 2012
NSEQ  2
EFFN  2.000000
CKSUM 3988372655
STATS LOCAL MSV       -7.3866  0.72804
STATS LOCAL VITERBI   -8.1091  0.72804
STATS LOCAL FORWARD   -3.4400  0.72804
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34404  1.34309  1.43461  1.42727
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.23862  2.84929  2.43386  2.70756     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_ninei_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:13:47 2012
NSEQ  2
EFFN  2.000000
CKSUM 3812300370
STATS LOCAL MSV       -7.4061  0.72764
STATS LOCAL VITERBI   -8.1319  0.72764
STATS LOCAL FORWARD   -3.4528  0.72764
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.46216  1.24196  1.32139  1.54796
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_ninej_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:13:53 2012
NSEQ  29
EFFN  3.189575
CKSUM 2074168776
STATS LOCAL MSV       -8.0345  0.71933
STATS LOCAL VITERBI   -7.6855  0.71933
STATS LOCAL FORWARD   -3.9179  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34160  1.26671  1.38128  1.58202
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  0.00000        *
      1   3.38283  0.13637  3.43439  2.79225      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
      2   2.91688  3.54335  0.12214  3.44346      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
      3   0.14779  3.33669  2.77353  3.23426      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
      4   3.38283  0.13637  3.43439  2.79225      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
      5   3.04483  2.56726  3.09465  0.18590      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
      6   3.38283  0.13637  3.43439  2.79225      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
      7   3.04483  2.56726  3.09465  0.18590      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
      8   3.38283  0.13637  3.43439  2.79225      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
      9   2.91688  3.54335  0.12214  3.44346      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     10   2.91688  3.54335  0.12214  3.44346     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     11   3.38283  0.13637  3.43439  2.79225     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     12   0.14779  3.33669  2.77353  3.23426     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     13   0.14779  3.33669  2.77353  3.23426     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     14   3.38283  0.13637  3.43439  2.79225     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     15   2.91688  3.54335  0.12214  3.44346     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     16   2.91688  3.54335  0.12214  3.44346     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     17   0.14779  3.33669  2.77353  3.23426     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     18   3.04483  2.56726  3.09465  0.18590     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     19   0.14779  3.33669  2.77353  3.23426     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     20   3.04483  2.56726  3.09465  0.18590     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     21   3.38283  0.13637  3.43439  2.79225     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     22   3.04483  2.56726  3.09465  0.18590     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     23   3.38283  0.13637  3.43439  2.79225     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     24   2.91688  3.54335  0.12214  3.44346     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     25   2.91688  3.54335  0.12214  3.44346     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     26   3.38283  0.13637  3.43439  2.79225     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     27   3.04483  2.56726  3.09465  0.18590     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     28   3.38283  0.13637  3.43439  2.79225     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     29   0.14779  3.33669  2.77353  3.23426     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     30   3.04483  2.56726  3.09465  0.18590     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     31   2.91688  3.54335  0.12214  3.44346     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     32   3.38283  0.13637  3.43439  2.79225     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     33   0.14779  3.33669  2.77353  3.23426     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     34   3.04483  2.56726  3.09465  0.18590     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     35   3.38283  0.13637  3.43439  2.79225     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     36   2.91688  3.54335  0.12214  3.44346     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     37   0.14779  3.33669  2.77353  3.23426     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     38   3.04483  2.56726  3.09465  0.18590     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     39   2.91688  3.54335  0.12214  3.44346     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     40   0.14779  3.33669  2.77353  3.23426     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     41   0.14779  3.33669  2.77353  3.23426     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     42   2.91688  3.54335  0.12214  3.44346     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     43   0.14779  3.33669  2.77353  3.23426     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     44   0.14779  3.33669  2.77353  3.23426     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
     45   3.38283  0.13637  3.43439  2.79225     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01909  3.96832        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_ninek_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:13:58 2012
NSEQ  10
EFFN  3.383789
CKSUM 3321732590
STATS LOCAL MSV       -7.5222  0.71932
STATS LOCAL VITERBI   -7.6007  0.71932
STATS LOCAL FORWARD   -4.1158  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39575  1.33634  1.39319  1.42186
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  0.00000        *
      1   3.10820  2.60760  3.15560  0.17555      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
      2   2.96099  3.60737  0.11504  3.51408      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
      3   0.13936  3.39963  2.81449  3.30313      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
      4   3.45541  0.12758  3.50392  2.84521      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
      5   3.10820  2.60760  3.15560  0.17555      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
      6   3.45541  0.12758  3.50392  2.84521      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
      7   3.10820  2.60760  3.15560  0.17555      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
      8   3.45541  0.12758  3.50392  2.84521      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
      9   2.96099  3.60737  0.11504  3.51408      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     10   2.96099  3.60737  0.11504  3.51408     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     11   3.45541  0.12758  3.50392  2.84521     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     12   0.13936  3.39963  2.81449  3.30313     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     13   0.13936  3.39963  2.81449  3.30313     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     14   3.45541  0.12758  3.50392  2.84521     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     15   2.96099  3.60737  0.11504  3.51408     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     16   2.96099  3.60737  0.11504  3.51408     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     17   0.13936  3.39963  2.81449  3.30313     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     18   3.10820  2.60760  3.15560  0.17555     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     19   0.13936  3.39963  2.81449  3.30313     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     20   3.10820  2.60760  3.15560  0.17555     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     21   3.45541  0.12758  3.50392  2.84521     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     22   3.10820  2.60760  3.15560  0.17555     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     23   3.45541  0.12758  3.50392  2.84521     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     24   2.96099  3.60737  0.11504  3.51408     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     25   2.96099  3.60737  0.11504  3.51408     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     26   3.45541  0.12758  3.50392  2.84521     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     27   3.10820  2.60760  3.15560  0.17555     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     28   3.45541  0.12758  3.50392  2.84521     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     29   3.10820  2.60760  3.15560  0.17555     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     30   3.10820  2.60760  3.15560  0.17555     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     31   2.96099  3.60737  0.11504  3.51408     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     32   3.45541  0.12758  3.50392  2.84521     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     33   0.13936  3.39963  2.81449  3.30313     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     34   3.10820  2.60760  3.15560  0.17555     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     35   3.45541  0.12758  3.50392  2.84521     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     36   2.96099  3.60737  0.11504  3.51408     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     37   0.13936  3.39963  2.81449  3.30313     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     38   3.10820  2.60760  3.15560  0.17555     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     39   2.96099  3.60737  0.11504  3.51408     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     40   0.13936  3.39963  2.81449  3.30313     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     41   0.13936  3.39963  2.81449  3.30313     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     42   1.86508  2.96676  0.30783  2.83696     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     43   0.13936  3.39963  2.81449  3.30313     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     44   0.13936  3.39963  2.81449  3.30313     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
     45   2.76591  0.36141  2.83341  1.70606     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01840  4.00438        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_ninel_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:14:04 2012
NSEQ  27
EFFN  3.318970
CKSUM 640933778
STATS LOCAL MSV       -7.9871  0.71932
STATS LOCAL VITERBI   -7.6291  0.71932
STATS LOCAL FORWARD   -4.2511  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40354  1.38599  1.39206  1.36401
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  0.00000        *
      1   3.08741  2.59438  3.13561  0.17887      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
      2   2.94670  3.58655  0.11729  3.49109      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
      3   0.14205  3.37907  2.80115  3.28063      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
      4   3.43174  0.13037  3.48126  2.82800      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
      5   3.08741  2.59438  3.13561  0.17887      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
      6   3.43174  0.13037  3.48126  2.82800      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
      7   3.08741  2.59438  3.13561  0.17887      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
      8   3.43174  0.13037  3.48126  2.82800      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
      9   2.94670  3.58655  0.11729  3.49109      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     10   2.54971  2.86852  0.27680  2.23581     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     11   3.43174  0.13037  3.48126  2.82800     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     12   0.14205  3.37907  2.80115  3.28063     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     13   0.14205  3.37907  2.80115  3.28063     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     14   3.08741  2.59438  3.13561  0.17887     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     15   2.94670  3.58655  0.11729  3.49109     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     16   2.94670  3.58655  0.11729  3.49109     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     17   0.14205  3.37907  2.80115  3.28063     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     18   3.08741  2.59438  3.13561  0.17887     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     19   0.14205  3.37907  2.80115  3.28063     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     20   3.08741  2.59438  3.13561  0.17887     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     21   3.43174  0.13037  3.48126  2.82800     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     22   3.08741  2.59438  3.13561  0.17887     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     23   3.43174  0.13037  3.48126  2.82800     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     24   2.94670  3.58655  0.11729  3.49109     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     25   2.94670  3.58655  0.11729  3.49109     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     26   3.43174  0.13037  3.48126  2.82800     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     27   3.08741  2.59438  3.13561  0.17887     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     28   3.43174  0.13037  3.48126  2.82800     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     29   3.08741  2.59438  3.13561  0.17887     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     30   3.08741  2.59438  3.13561  0.17887     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     31   2.94670  3.58655  0.11729  3.49109     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     32   3.43174  0.13037  3.48126  2.82800     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     33   0.14205  3.37907  2.80115  3.28063     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     34   3.08741  2.59438  3.13561  0.17887     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     35   3.43174  0.13037  3.48126  2.82800     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     36   2.94670  3.58655  0.11729  3.49109     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     37   0.14205  3.37907  2.80115  3.28063     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     38   3.08741  2.59438  3.13561  0.17887     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     39   2.94670  3.58655  0.11729  3.49109     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     40   0.14205  3.37907  2.80115  3.28063     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     41   0.14205  3.37907  2.80115  3.28063     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     42   2.94670  3.58655  0.11729  3.49109     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     43   0.14205  3.37907  2.80115  3.28063     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     44   0.14205  3.37907  2.80115  3.28063     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
     45   3.43174  0.13037  3.48126  2.82800     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01863  3.99249        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_ninem_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:14:09 2012
NSEQ  8
EFFN  3.207031
CKSUM 388308972
STATS LOCAL MSV       -8.1606  0.71932
STATS LOCAL VITERBI   -7.7611  0.71932
STATS LOCAL FORWARD   -4.0593  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40764  1.26351  1.38278  1.50624
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  0.00000        *
      1   3.38956  0.13553  3.44084  2.79718      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
      2   2.92101  3.54931  0.12145  3.45003      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
      3   0.14698  3.34251  2.77733  3.24063      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
      4   3.38956  0.13553  3.44084  2.79718      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
      5   3.05066  2.57097  3.10026  0.18492      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
      6   3.38956  0.13553  3.44084  2.79718      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
      7   3.05066  2.57097  3.10026  0.18492      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
      8   3.38956  0.13553  3.44084  2.79718      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
      9   2.92101  3.54931  0.12145  3.45003      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     10   2.92101  3.54931  0.12145  3.45003     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     11   3.38956  0.13553  3.44084  2.79718     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     12   0.14698  3.34251  2.77733  3.24063     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     13   0.14698  3.34251  2.77733  3.24063     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     14   3.05066  2.57097  3.10026  0.18492     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     15   2.92101  3.54931  0.12145  3.45003     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     16   2.92101  3.54931  0.12145  3.45003     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     17   0.14698  3.34251  2.77733  3.24063     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     18   3.05066  2.57097  3.10026  0.18492     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     19   0.14698  3.34251  2.77733  3.24063     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     20   3.05066  2.57097  3.10026  0.18492     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     21   3.38956  0.13553  3.44084  2.79718     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     22   3.05066  2.57097  3.10026  0.18492     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     23   3.38956  0.13553  3.44084  2.79718     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     24   2.92101  3.54931  0.12145  3.45003     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     25   2.92101  3.54931  0.12145  3.45003     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     26   3.38956  0.13553  3.44084  2.79718     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     27   3.05066  2.57097  3.10026  0.18492     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     28   3.38956  0.13553  3.44084  2.79718     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     29   3.05066  2.57097  3.10026  0.18492     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     30   3.38956  0.13553  3.44084  2.79718     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     31   2.92101  3.54931  0.12145  3.45003     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     32   3.38956  0.13553  3.44084  2.79718     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     33   0.14698  3.34251  2.77733  3.24063     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     34   3.05066  2.57097  3.10026  0.18492     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     35   3.38956  0.13553  3.44084  2.79718     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     36   2.92101  3.54931  0.12145  3.45003     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     37   0.14698  3.34251  2.77733  3.24063     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     38   3.05066  2.57097  3.10026  0.18492     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     39   2.92101  3.54931  0.12145  3.45003     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     40   0.14698  3.34251  2.77733  3.24063     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     41   0.14698  3.34251  2.77733  3.24063     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     42   2.92101  3.54931  0.12145  3.45003     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     43   0.14698  3.34251  2.77733  3.24063     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     44   0.14698  3.34251  2.77733  3.24063     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     45   3.38956  0.13553  3.44084  2.79718     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01902  3.97162        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_ninen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:14:13 2012
NSEQ  2
EFFN  2.000000
CKSUM 194503138
STATS LOCAL MSV       -7.4789  0.72807
STATS LOCAL VITERBI   -8.2229  0.72807
STATS LOCAL FORWARD   -3.6133  0.72807
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39870  1.39791  1.37392  1.37493
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_nineo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:14:18 2012
NSEQ  3
EFFN  3.000000
CKSUM 3592650123
STATS LOCAL MSV       -7.9344  0.72076
STATS LOCAL VITERBI   -7.6721  0.72076
STATS LOCAL FORWARD   -3.7518  0.72076
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26182  1.31519  1.42658  1.56874
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   1.21118  1.33798  1.26855  1.84174      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   0.15719  3.27118  2.73043  3.16274     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   0.15719  3.27118  2.73043  3.16274     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   3.30705  0.14631  3.36166  2.73626     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.97980  2.52563  3.03204  0.19727     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   3.30705  0.14631  3.36166  2.73626     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.97980  2.52563  3.03204  0.19727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   0.15719  3.27118  2.73043  3.16274     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   0.15719  3.27118  2.73043  3.16274     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_ninep_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:14:24 2012
NSEQ  12
EFFN  3.190430
CKSUM 2049545075
STATS LOCAL MSV       -8.0345  0.71932
STATS LOCAL VITERBI   -7.6858  0.71932
STATS LOCAL FORWARD   -3.9181  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34160  1.26670  1.38129  1.58203
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  0.00000        *
      1   3.38316  0.13633  3.43471  2.79249      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
      2   2.91709  3.54364  0.12210  3.44379      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
      3   0.14775  3.33697  2.77371  3.23457      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
      4   3.38316  0.13633  3.43471  2.79249      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
      5   3.04512  2.56744  3.09493  0.18585      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
      6   3.38316  0.13633  3.43471  2.79249      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
      7   3.04512  2.56744  3.09493  0.18585      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
      8   3.38316  0.13633  3.43471  2.79249      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
      9   2.91709  3.54364  0.12210  3.44379      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     10   2.91709  3.54364  0.12210  3.44379     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     11   3.38316  0.13633  3.43471  2.79249     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     12   0.14775  3.33697  2.77371  3.23457     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     13   0.14775  3.33697  2.77371  3.23457     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     14   3.38316  0.13633  3.43471  2.79249     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     15   2.91709  3.54364  0.12210  3.44379     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     16   2.91709  3.54364  0.12210  3.44379     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     17   0.14775  3.33697  2.77371  3.23457     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     18   3.04512  2.56744  3.09493  0.18585     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     19   0.14775  3.33697  2.77371  3.23457     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     20   3.04512  2.56744  3.09493  0.18585     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     21   3.38316  0.13633  3.43471  2.79249     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     22   3.04512  2.56744  3.09493  0.18585     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     23   3.38316  0.13633  3.43471  2.79249     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     24   2.91709  3.54364  0.12210  3.44379     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     25   2.91709  3.54364  0.12210  3.44379     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     26   3.38316  0.13633  3.43471  2.79249     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     27   3.04512  2.56744  3.09493  0.18585     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     28   3.38316  0.13633  3.43471  2.79249     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     29   0.14775  3.33697  2.77371  3.23457     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     30   3.04512  2.56744  3.09493  0.18585     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     31   2.91709  3.54364  0.12210  3.44379     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     32   3.38316  0.13633  3.43471  2.79249     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     33   0.14775  3.33697  2.77371  3.23457     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     34   3.04512  2.56744  3.09493  0.18585     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     35   3.38316  0.13633  3.43471  2.79249     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     36   2.91709  3.54364  0.12210  3.44379     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     37   0.14775  3.33697  2.77371  3.23457     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     38   3.04512  2.56744  3.09493  0.18585     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     39   2.91709  3.54364  0.12210  3.44379     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     40   0.14775  3.33697  2.77371  3.23457     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     41   0.14775  3.33697  2.77371  3.23457     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     42   2.91709  3.54364  0.12210  3.44379     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     43   0.14775  3.33697  2.77371  3.23457     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     44   0.14775  3.33697  2.77371  3.23457     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
     45   3.38316  0.13633  3.43471  2.79249     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01908  3.96848        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_nineq_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:14:31 2012
NSEQ  15
EFFN  3.336182
CKSUM 3271186430
STATS LOCAL MSV       -8.0468  0.71932
STATS LOCAL VITERBI   -7.6643  0.71932
STATS LOCAL FORWARD   -4.0052  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33355  1.35898  1.37681  1.48212
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  0.00000        *
      1   0.14133  3.38458  2.80473  3.28665      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
      2   2.95053  3.59213  0.11668  3.49725      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
      3   0.14133  3.38458  2.80473  3.28665      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
      4   3.43808  0.12962  3.48733  2.83261      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
      5   3.09296  2.59791  3.14095  0.17798      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
      6   3.43808  0.12962  3.48733  2.83261      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
      7   3.09296  2.59791  3.14095  0.17798      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
      8   3.43808  0.12962  3.48733  2.83261      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
      9   2.95053  3.59213  0.11668  3.49725      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     10   2.95053  3.59213  0.11668  3.49725     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     11   3.43808  0.12962  3.48733  2.83261     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     12   0.14133  3.38458  2.80473  3.28665     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     13   0.14133  3.38458  2.80473  3.28665     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     14   3.43808  0.12962  3.48733  2.83261     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     15   2.95053  3.59213  0.11668  3.49725     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     16   2.95053  3.59213  0.11668  3.49725     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     17   0.14133  3.38458  2.80473  3.28665     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     18   3.09296  2.59791  3.14095  0.17798     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     19   0.14133  3.38458  2.80473  3.28665     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     20   3.09296  2.59791  3.14095  0.17798     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     21   3.43808  0.12962  3.48733  2.83261     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     22   3.09296  2.59791  3.14095  0.17798     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     23   3.09296  2.59791  3.14095  0.17798     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     24   2.95053  3.59213  0.11668  3.49725     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     25   2.95053  3.59213  0.11668  3.49725     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     26   3.43808  0.12962  3.48733  2.83261     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     27   3.09296  2.59791  3.14095  0.17798     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     28   3.43808  0.12962  3.48733  2.83261     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     29   3.09296  2.59791  3.14095  0.17798     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     30   2.43538  0.73697  2.50788  1.04289     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     31   2.95053  3.59213  0.11668  3.49725     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     32   3.43808  0.12962  3.48733  2.83261     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     33   0.14133  3.38458  2.80473  3.28665     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     34   3.09296  2.59791  3.14095  0.17798     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     35   3.43808  0.12962  3.48733  2.83261     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     36   2.95053  3.59213  0.11668  3.49725     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     37   0.14133  3.38458  2.80473  3.28665     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     38   3.09296  2.59791  3.14095  0.17798     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     39   2.95053  3.59213  0.11668  3.49725     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     40   0.14133  3.38458  2.80473  3.28665     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     41   0.14133  3.38458  2.80473  3.28665     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     42   2.95053  3.59213  0.11668  3.49725     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     43   0.14133  3.38458  2.80473  3.28665     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     44   0.14133  3.38458  2.80473  3.28665     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
     45   3.43808  0.12962  3.48733  2.83261     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01857  3.99566        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_niner_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:14:40 2012
NSEQ  1631
EFFN  3.673956
CKSUM 3384115276
STATS LOCAL MSV       -7.6208  0.71933
STATS LOCAL VITERBI   -7.6410  0.71933
STATS LOCAL FORWARD   -3.9735  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.38082  1.26665  1.37302  1.54405
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  0.00000        *
      1   2.37824  0.62590  2.43334  1.25609      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
      2   2.77685  3.58728  0.12807  3.49652      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
      3   0.12864  3.48642  2.87047  3.39832      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
      4   3.55496  0.11657  3.59909  2.91689      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
      5   3.19708  2.66398  3.24103  0.16214      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
      6   3.55496  0.11657  3.59909  2.91689      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
      7   3.10118  2.42316  3.14895  0.19423      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
      8   3.45468  0.13230  3.42439  2.81744      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
      9   3.02021  3.69433  0.10614  3.61032      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     10   2.92544  3.65523  0.11393  3.56912     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     11   3.45801  0.12993  3.39292  2.86926     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     12   0.13702  3.45284  2.78437  3.36310     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     13   0.12864  3.48642  2.87047  3.39832     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     14   3.50366  0.12675  3.54954  2.80967     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     15   3.02021  3.69433  0.10614  3.61032     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     16   3.02021  3.69433  0.10614  3.61032     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     17   0.12864  3.48642  2.87047  3.39832     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     18   3.19708  2.66398  3.24103  0.16214     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     19   0.12864  3.48642  2.87047  3.39832     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     20   3.19708  2.66398  3.24103  0.16214     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     21   3.55496  0.11657  3.59909  2.91689     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     22   3.19708  2.66398  3.24103  0.16214     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     23   3.23252  0.16301  3.36338  2.57256     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     24   2.98023  3.47991  0.11807  3.51415     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     25   3.02021  3.69433  0.10614  3.61032     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     26   3.50767  0.12594  3.55341  2.81776     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     27   3.19708  2.66398  3.24103  0.16214     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     28   3.55496  0.11657  3.59909  2.91689     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     29   1.49008  2.22189  2.28320  0.57220     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     30   2.48276  1.06693  2.55323  0.70402     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     31   2.92531  3.65518  0.11394  3.56906     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     32   3.55496  0.11657  3.59909  2.91689     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     33   0.12864  3.48642  2.87047  3.39832     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     34   3.19708  2.66398  3.24103  0.16214     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     35   3.55496  0.11657  3.59909  2.91689     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     36   3.02021  3.69433  0.10614  3.61032     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     37   0.12864  3.48642  2.87047  3.39832     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     38   3.19708  2.66398  3.24103  0.16214     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     39   3.02021  3.69433  0.10614  3.61032     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     40   0.12864  3.48642  2.87047  3.39832     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     41   0.12864  3.48642  2.87047  3.39832     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     42   3.02021  3.69433  0.10614  3.61032     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     43   0.12864  3.48642  2.87047  3.39832     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     44   0.12864  3.48642  2.87047  3.39832     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
     45   3.55496  0.11657  3.59909  2.91689     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01747  4.05595        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_onea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:54:43 2012
NSEQ  8
EFFN  3.597656
CKSUM 3069228844
STATS LOCAL MSV       -7.7371  0.71932
STATS LOCAL VITERBI   -7.6193  0.71932
STATS LOCAL FORWARD   -4.1725  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.32040  1.29960  1.63507  1.32655
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  0.00000        *
      1   3.17435  2.64957  3.21919  0.16545      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
      2   2.16721  0.30824  2.78013  2.42212      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
      3   0.13127  3.46439  2.85631  3.37414      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
      4   3.52976  0.11925  3.57502  2.89885      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
      5   3.17435  2.64957  3.21919  0.16545      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
      6   3.17435  2.64957  3.21919  0.16545      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
      7   3.17435  2.64957  3.21919  0.16545      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
      8   3.52976  0.11925  3.57502  2.89885      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
      9   0.13127  3.46439  2.85631  3.37414      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     10   0.13127  3.46439  2.85631  3.37414     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     11   3.52976  0.11925  3.57502  2.89885     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     12   0.13127  3.46439  2.85631  3.37414     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     13   0.13127  3.46439  2.85631  3.37414     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     14   2.45394  0.94651  2.52541  0.80760     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     15   3.00534  3.67241  0.10830  3.58603     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     16   3.00534  3.67241  0.10830  3.58603     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     17   0.13127  3.46439  2.85631  3.37414     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     18   3.17435  2.64957  3.21919  0.16545     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     19   3.52976  0.11925  3.57502  2.89885     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     20   3.17435  2.64957  3.21919  0.16545     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     21   3.52976  0.11925  3.57502  2.89885     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     22   3.17435  2.64957  3.21919  0.16545     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     23   3.17435  2.64957  3.21919  0.16545     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     24   3.00534  3.67241  0.10830  3.58603     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     25   3.00534  3.67241  0.10830  3.58603     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     26   3.52976  0.11925  3.57502  2.89885     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     27   3.17435  2.64957  3.21919  0.16545     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     28   3.52976  0.11925  3.57502  2.89885     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     29   3.17435  2.64957  3.21919  0.16545     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     30   3.52976  0.11925  3.57502  2.89885     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     31   3.00534  3.67241  0.10830  3.58603     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     32   3.52976  0.11925  3.57502  2.89885     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     33   0.13127  3.46439  2.85631  3.37414     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     34   3.17435  2.64957  3.21919  0.16545     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     35   3.52976  0.11925  3.57502  2.89885     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     36   3.00534  3.67241  0.10830  3.58603     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     37   0.13127  3.46439  2.85631  3.37414     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     38   3.17435  2.64957  3.21919  0.16545     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     39   3.00534  3.67241  0.10830  3.58603     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     40   0.13127  3.46439  2.85631  3.37414     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     41   0.13127  3.46439  2.85631  3.37414     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     42   1.68040  2.89345  0.36377  2.76041     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     43   0.13127  3.46439  2.85631  3.37414     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     44   0.13127  3.46439  2.85631  3.37414     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
     45   3.52976  0.11925  3.57502  2.89885     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01771  4.04264        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_oneb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:54:52 2012
NSEQ  3
EFFN  3.000000
CKSUM 2894283180
STATS LOCAL MSV       -8.1544  0.72049
STATS LOCAL VITERBI   -7.7198  0.72049
STATS LOCAL FORWARD   -4.0031  0.72049
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40519  1.31757  1.52716  1.31028
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.97980  2.52563  3.03204  0.19727      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.97980  2.52563  3.03204  0.19727      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   3.30705  0.14631  3.36166  2.73626     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.97980  2.52563  3.03204  0.19727     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.97980  2.52563  3.03204  0.19727     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.97980  2.52563  3.03204  0.19727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.97980  2.52563  3.03204  0.19727     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   0.15719  3.27118  2.73043  3.16274     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_onec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:55:02 2012
NSEQ  44
EFFN  3.649658
CKSUM 2327022651
STATS LOCAL MSV       -7.5756  0.71932
STATS LOCAL VITERBI   -7.5779  0.71932
STATS LOCAL FORWARD   -3.9495  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.21489  1.46036  1.53943  1.36023
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  0.00000        *
      1   0.29652  2.21705  2.54287  2.67327      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
      2   0.12947  3.47946  2.86600  3.39068      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
      3   0.12947  3.47946  2.86600  3.39068      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
      4   3.54700  0.11741  3.59149  2.91120      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
      5   3.18989  2.65942  3.23412  0.16318      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
      6   3.18989  2.65942  3.23412  0.16318      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
      7   3.18989  2.65942  3.23412  0.16318      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
      8   2.94187  0.29151  3.00554  1.89321      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
      9   0.12947  3.47946  2.86600  3.39068      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     10   0.12947  3.47946  2.86600  3.39068     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     11   3.54700  0.11741  3.59149  2.91120     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     12   0.12947  3.47946  2.86600  3.39068     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     13   0.12947  3.47946  2.86600  3.39068     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     14   3.02953  0.25564  3.09094  2.02663     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     15   3.01552  3.68741  0.10682  3.60266     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     16   3.01552  3.68741  0.10682  3.60266     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     17   0.12947  3.47946  2.86600  3.39068     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     18   3.18989  2.65942  3.23412  0.16318     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     19   3.54700  0.11741  3.59149  2.91120     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     20   3.18989  2.65942  3.23412  0.16318     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     21   3.54700  0.11741  3.59149  2.91120     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     22   3.18989  2.65942  3.23412  0.16318     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     23   3.18989  2.65942  3.23412  0.16318     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     24   3.01552  3.68741  0.10682  3.60266     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     25   3.01552  3.68741  0.10682  3.60266     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     26   2.97399  2.15606  3.02698  0.24251     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     27   3.18989  2.65942  3.23412  0.16318     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     28   3.54700  0.11741  3.59149  2.91120     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     29   2.98242  2.17364  3.03507  0.23890     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     30   2.52061  2.13933  0.31228  2.65809     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     31   3.01552  3.68741  0.10682  3.60266     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     32   3.54700  0.11741  3.59149  2.91120     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     33   0.12947  3.47946  2.86600  3.39068     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     34   3.18989  2.65942  3.23412  0.16318     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     35   3.54700  0.11741  3.59149  2.91120     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     36   3.01552  3.68741  0.10682  3.60266     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     37   0.12947  3.47946  2.86600  3.39068     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     38   3.18989  2.65942  3.23412  0.16318     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     39   3.01552  3.68741  0.10682  3.60266     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     40   0.12947  3.47946  2.86600  3.39068     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     41   0.12947  3.47946  2.86600  3.39068     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     42   3.01552  3.68741  0.10682  3.60266     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     43   0.12947  3.47946  2.86600  3.39068     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     44   0.12947  3.47946  2.86600  3.39068     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
     45   3.54700  0.11741  3.59149  2.91120     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01755  4.05173        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_sevena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:57:27 2012
NSEQ  33
EFFN  3.307251
CKSUM 3974060790
STATS LOCAL MSV       -8.1230  0.71931
STATS LOCAL VITERBI   -7.6737  0.71931
STATS LOCAL FORWARD   -4.1389  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40155  1.34561  1.31245  1.49502
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  0.00000        *
      1   2.94407  3.58273  0.11771  3.48688      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
      2   2.94407  3.58273  0.11771  3.48688      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
      3   0.14255  3.37531  2.79871  3.27650      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
      4   3.42740  0.13089  3.47710  2.82484      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
      5   3.08361  2.59196  3.13196  0.17948      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
      6   3.42740  0.13089  3.47710  2.82484      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
      7   3.42740  0.13089  3.47710  2.82484      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
      8   3.42740  0.13089  3.47710  2.82484      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
      9   2.94407  3.58273  0.11771  3.48688      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     10   0.14255  3.37531  2.79871  3.27650     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     11   3.42740  0.13089  3.47710  2.82484     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     12   0.14255  3.37531  2.79871  3.27650     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     13   0.14255  3.37531  2.79871  3.27650     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     14   3.08361  2.59196  3.13196  0.17948     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     15   2.94407  3.58273  0.11771  3.48688     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     16   2.94407  3.58273  0.11771  3.48688     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     17   0.14255  3.37531  2.79871  3.27650     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     18   3.08361  2.59196  3.13196  0.17948     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     19   0.14255  3.37531  2.79871  3.27650     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     20   3.08361  2.59196  3.13196  0.17948     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     21   3.42740  0.13089  3.47710  2.82484     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     22   3.08361  2.59196  3.13196  0.17948     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     23   3.08361  2.59196  3.13196  0.17948     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     24   2.94407  3.58273  0.11771  3.48688     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     25   2.94407  3.58273  0.11771  3.48688     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     26   3.42740  0.13089  3.47710  2.82484     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     27   3.08361  2.59196  3.13196  0.17948     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     28   3.42740  0.13089  3.47710  2.82484     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     29   3.08361  2.59196  3.13196  0.17948     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     30   2.65063  0.43216  2.72028  1.53976     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     31   2.67056  3.44980  0.14636  3.34717     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     32   3.42740  0.13089  3.47710  2.82484     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     33   0.14255  3.37531  2.79871  3.27650     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     34   3.08361  2.59196  3.13196  0.17948     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     35   3.42740  0.13089  3.47710  2.82484     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     36   2.94407  3.58273  0.11771  3.48688     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     37   0.14255  3.37531  2.79871  3.27650     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     38   3.08361  2.59196  3.13196  0.17948     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     39   2.94407  3.58273  0.11771  3.48688     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     40   0.14255  3.37531  2.79871  3.27650     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     41   0.14255  3.37531  2.79871  3.27650     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     42   2.94407  3.58273  0.11771  3.48688     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     43   0.14255  3.37531  2.79871  3.27650     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     44   2.94407  3.58273  0.11771  3.48688     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
     45   3.42740  0.13089  3.47710  2.82484     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01867  3.99033        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_sevenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:57:34 2012
NSEQ  2
EFFN  2.000000
CKSUM 345249460
STATS LOCAL MSV       -7.4451  0.72877
STATS LOCAL VITERBI   -8.2827  0.72877
STATS LOCAL FORWARD   -3.2802  0.72877
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27023  1.23254  1.61372  1.47606
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.92825  2.28391  0.95698  2.13014      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_sevenc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:57:45 2012
NSEQ  2
EFFN  2.000000
CKSUM 984252909
STATS LOCAL MSV       -7.6013  0.72797
STATS LOCAL VITERBI   -8.1244  0.72797
STATS LOCAL FORWARD   -3.5282  0.72797
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34254  1.39917  1.37271  1.43299
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_sevend_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:57:51 2012
NSEQ  4
EFFN  3.183594
CKSUM 890420045
STATS LOCAL MSV       -8.1260  0.71933
STATS LOCAL VITERBI   -7.7591  0.71933
STATS LOCAL FORWARD   -3.7309  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40872  1.20773  1.38372  1.57976
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  0.00000        *
      1   3.38051  0.13666  3.43217  2.79055      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      2   2.91546  3.54130  0.12237  3.44120      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      3   0.14807  3.33468  2.77222  3.23207      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      4   3.38051  0.13666  3.43217  2.79055      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      5   3.04283  2.56598  3.09273  0.18624      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      6   3.38051  0.13666  3.43217  2.79055      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      7   3.04283  2.56598  3.09273  0.18624      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      8   3.38051  0.13666  3.43217  2.79055      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      9   2.91546  3.54130  0.12237  3.44120      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     10   2.91546  3.54130  0.12237  3.44120     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     11   3.38051  0.13666  3.43217  2.79055     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     12   0.14807  3.33468  2.77222  3.23207     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     13   0.14807  3.33468  2.77222  3.23207     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     14   3.38051  0.13666  3.43217  2.79055     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     15   2.91546  3.54130  0.12237  3.44120     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     16   2.91546  3.54130  0.12237  3.44120     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     17   0.14807  3.33468  2.77222  3.23207     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     18   3.04283  2.56598  3.09273  0.18624     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     19   0.14807  3.33468  2.77222  3.23207     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     20   3.04283  2.56598  3.09273  0.18624     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     21   3.38051  0.13666  3.43217  2.79055     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     22   3.04283  2.56598  3.09273  0.18624     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     23   3.38051  0.13666  3.43217  2.79055     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     24   2.91546  3.54130  0.12237  3.44120     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     25   3.38051  0.13666  3.43217  2.79055     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     26   2.91546  3.54130  0.12237  3.44120     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     27   3.04283  2.56598  3.09273  0.18624     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     28   3.38051  0.13666  3.43217  2.79055     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     29   3.04283  2.56598  3.09273  0.18624     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     30   3.38051  0.13666  3.43217  2.79055     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     31   2.91546  3.54130  0.12237  3.44120     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     32   3.38051  0.13666  3.43217  2.79055     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     33   0.14807  3.33468  2.77222  3.23207     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     34   3.04283  2.56598  3.09273  0.18624     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     35   3.38051  0.13666  3.43217  2.79055     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     36   2.91546  3.54130  0.12237  3.44120     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     37   0.14807  3.33468  2.77222  3.23207     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     38   3.04283  2.56598  3.09273  0.18624     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     39   2.91546  3.54130  0.12237  3.44120     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     40   0.14807  3.33468  2.77222  3.23207     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     41   0.14807  3.33468  2.77222  3.23207     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     42   2.91546  3.54130  0.12237  3.44120     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     43   0.14807  3.33468  2.77222  3.23207     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     44   0.14807  3.33468  2.77222  3.23207     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     45   3.38051  0.13666  3.43217  2.79055     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01911  3.96719        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_sevene_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:57:57 2012
NSEQ  2
EFFN  2.000000
CKSUM 2718696898
STATS LOCAL MSV       -7.4885  0.72793
STATS LOCAL VITERBI   -8.0276  0.72793
STATS LOCAL FORWARD   -3.5798  0.72793
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.29079  1.34425  1.43332  1.48857
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_sevenf_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:58:01 2012
NSEQ  2
EFFN  2.000000
CKSUM 1738718247
STATS LOCAL MSV       -7.5475  0.72825
STATS LOCAL VITERBI   -8.3216  0.72825
STATS LOCAL FORWARD   -3.4732  0.72825
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28986  1.39643  1.49646  1.37323
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   0.23862  2.84929  2.43386  2.70756     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   0.23862  2.84929  2.43386  2.70756     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.57915  2.25909  2.64442  0.28946     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_seveng_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:58:06 2012
NSEQ  8
EFFN  3.160156
CKSUM 1659179232
STATS LOCAL MSV       -7.9878  0.71933
STATS LOCAL VITERBI   -7.5924  0.71933
STATS LOCAL FORWARD   -3.9345  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40981  1.15513  1.38466  1.65870
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  0.00000        *
      1   3.37140  0.13782  3.42342  2.78385      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
      2   2.90985  3.53322  0.12331  3.43230      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
      3   0.14916  3.32679  2.76705  3.22344      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
      4   3.37140  0.13782  3.42342  2.78385      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
      5   3.03495  2.56095  3.08514  0.18757      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
      6   3.37140  0.13782  3.42342  2.78385      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
      7   3.03495  2.56095  3.08514  0.18757      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
      8   3.37140  0.13782  3.42342  2.78385      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
      9   2.90985  3.53322  0.12331  3.43230      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     10   2.90985  3.53322  0.12331  3.43230     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     11   3.37140  0.13782  3.42342  2.78385     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     12   0.14916  3.32679  2.76705  3.22344     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     13   0.14916  3.32679  2.76705  3.22344     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     14   3.37140  0.13782  3.42342  2.78385     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     15   2.90985  3.53322  0.12331  3.43230     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     16   2.90985  3.53322  0.12331  3.43230     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     17   0.14916  3.32679  2.76705  3.22344     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     18   3.03495  2.56095  3.08514  0.18757     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     19   0.14916  3.32679  2.76705  3.22344     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     20   3.03495  2.56095  3.08514  0.18757     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     21   3.37140  0.13782  3.42342  2.78385     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     22   3.03495  2.56095  3.08514  0.18757     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     23   3.03495  2.56095  3.08514  0.18757     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     24   2.90985  3.53322  0.12331  3.43230     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     25   2.90985  3.53322  0.12331  3.43230     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     26   3.37140  0.13782  3.42342  2.78385     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     27   3.03495  2.56095  3.08514  0.18757     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     28   3.37140  0.13782  3.42342  2.78385     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     29   3.37140  0.13782  3.42342  2.78385     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     30   3.37140  0.13782  3.42342  2.78385     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     31   2.90985  3.53322  0.12331  3.43230     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     32   3.37140  0.13782  3.42342  2.78385     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     33   3.37140  0.13782  3.42342  2.78385     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     34   0.14916  3.32679  2.76705  3.22344     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     35   3.37140  0.13782  3.42342  2.78385     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     36   2.90985  3.53322  0.12331  3.43230     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     37   0.14916  3.32679  2.76705  3.22344     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     38   3.03495  2.56095  3.08514  0.18757     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     39   2.90985  3.53322  0.12331  3.43230     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     40   0.14916  3.32679  2.76705  3.22344     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     41   0.14916  3.32679  2.76705  3.22344     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     42   2.90985  3.53322  0.12331  3.43230     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     43   0.14916  3.32679  2.76705  3.22344     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     44   0.14916  3.32679  2.76705  3.22344     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
     45   3.37140  0.13782  3.42342  2.78385     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01919  3.96275        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_sevenh_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:58:12 2012
NSEQ  3
EFFN  3.000000
CKSUM 3370148041
STATS LOCAL MSV       -8.0586  0.72009
STATS LOCAL VITERBI   -7.6977  0.72009
STATS LOCAL FORWARD   -3.8459  0.72009
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34211  1.26931  1.38024  1.57910
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   0.15719  3.27118  2.73043  3.16274     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   3.30705  0.14631  3.36166  2.73626     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.97980  2.52563  3.03204  0.19727     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   3.30705  0.14631  3.36166  2.73626     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.97980  2.52563  3.03204  0.19727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.97980  2.52563  3.03204  0.19727     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   0.15719  3.27118  2.73043  3.16274     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_seveni_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:58:18 2012
NSEQ  3
EFFN  3.000000
CKSUM 2759242053
STATS LOCAL MSV       -7.9338  0.72035
STATS LOCAL VITERBI   -7.6316  0.72035
STATS LOCAL FORWARD   -3.8921  0.72035
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28091  1.32591  1.52215  1.43375
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   0.15719  3.27118  2.73043  3.16274     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   0.15719  3.27118  2.73043  3.16274     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   3.30705  0.14631  3.36166  2.73626     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.97980  2.52563  3.03204  0.19727     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   3.30705  0.14631  3.36166  2.73626     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.97980  2.52563  3.03204  0.19727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.97980  2.52563  3.03204  0.19727     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   0.15719  3.27118  2.73043  3.16274     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_sevenj_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:58:24 2012
NSEQ  4
EFFN  3.230469
CKSUM 1413873171
STATS LOCAL MSV       -8.0313  0.71932
STATS LOCAL VITERBI   -7.5228  0.71932
STATS LOCAL FORWARD   -4.0558  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40654  1.32503  1.38182  1.43510
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  0.00000        *
      1   3.05845  2.57594  3.10775  0.18362      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      2   2.92650  3.55724  0.12055  3.45877      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      3   0.14592  3.35028  2.78241  3.24912      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      4   3.39853  0.13441  3.44944  2.80375      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      5   3.05845  2.57594  3.10775  0.18362      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      6   3.39853  0.13441  3.44944  2.80375      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      7   3.05845  2.57594  3.10775  0.18362      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      8   3.39853  0.13441  3.44944  2.80375      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      9   2.92650  3.55724  0.12055  3.45877      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     10   2.92650  3.55724  0.12055  3.45877     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     11   3.39853  0.13441  3.44944  2.80375     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     12   0.14592  3.35028  2.78241  3.24912     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     13   0.14592  3.35028  2.78241  3.24912     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     14   3.39853  0.13441  3.44944  2.80375     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     15   2.92650  3.55724  0.12055  3.45877     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     16   2.92650  3.55724  0.12055  3.45877     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     17   0.14592  3.35028  2.78241  3.24912     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     18   3.05845  2.57594  3.10775  0.18362     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     19   0.14592  3.35028  2.78241  3.24912     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     20   3.05845  2.57594  3.10775  0.18362     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     21   3.39853  0.13441  3.44944  2.80375     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     22   3.05845  2.57594  3.10775  0.18362     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     23   3.05845  2.57594  3.10775  0.18362     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     24   2.92650  3.55724  0.12055  3.45877     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     25   2.92650  3.55724  0.12055  3.45877     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     26   3.39853  0.13441  3.44944  2.80375     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     27   3.05845  2.57594  3.10775  0.18362     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     28   3.39853  0.13441  3.44944  2.80375     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     29   3.39853  0.13441  3.44944  2.80375     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     30   3.39853  0.13441  3.44944  2.80375     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     31   2.92650  3.55724  0.12055  3.45877     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     32   3.05845  2.57594  3.10775  0.18362     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     33   0.14592  3.35028  2.78241  3.24912     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     34   3.05845  2.57594  3.10775  0.18362     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     35   3.39853  0.13441  3.44944  2.80375     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     36   2.92650  3.55724  0.12055  3.45877     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     37   0.14592  3.35028  2.78241  3.24912     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     38   3.05845  2.57594  3.10775  0.18362     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     39   2.92650  3.55724  0.12055  3.45877     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     40   0.14592  3.35028  2.78241  3.24912     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     41   0.14592  3.35028  2.78241  3.24912     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     42   2.92650  3.55724  0.12055  3.45877     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     43   0.14592  3.35028  2.78241  3.24912     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     44   0.14592  3.35028  2.78241  3.24912     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     45   3.39853  0.13441  3.44944  2.80375     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01894  3.97602        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_sevenk_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:58:30 2012
NSEQ  5
EFFN  3.217773
CKSUM 3068909412
STATS LOCAL MSV       -8.0273  0.71930
STATS LOCAL VITERBI   -7.4396  0.71930
STATS LOCAL FORWARD   -3.9665  0.71930
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34043  1.32830  1.38034  1.50578
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  0.00000        *
      1   3.05424  2.57325  3.10370  0.18432      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
      2   2.92353  3.55295  0.12104  3.45404      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
      3   0.14649  3.34608  2.77966  3.24453      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
      4   3.39368  0.13501  3.44479  2.80020      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
      5   3.05424  2.57325  3.10370  0.18432      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
      6   3.39368  0.13501  3.44479  2.80020      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
      7   3.05424  2.57325  3.10370  0.18432      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
      8   3.39368  0.13501  3.44479  2.80020      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
      9   2.92353  3.55295  0.12104  3.45404      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     10   2.92353  3.55295  0.12104  3.45404     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     11   3.39368  0.13501  3.44479  2.80020     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     12   0.14649  3.34608  2.77966  3.24453     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     13   0.14649  3.34608  2.77966  3.24453     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     14   3.39368  0.13501  3.44479  2.80020     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     15   2.92353  3.55295  0.12104  3.45404     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     16   2.92353  3.55295  0.12104  3.45404     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     17   0.14649  3.34608  2.77966  3.24453     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     18   3.05424  2.57325  3.10370  0.18432     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     19   0.14649  3.34608  2.77966  3.24453     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     20   3.05424  2.57325  3.10370  0.18432     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     21   3.39368  0.13501  3.44479  2.80020     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     22   3.05424  2.57325  3.10370  0.18432     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     23   0.14649  3.34608  2.77966  3.24453     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     24   2.92353  3.55295  0.12104  3.45404     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     25   2.92353  3.55295  0.12104  3.45404     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     26   3.39368  0.13501  3.44479  2.80020     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     27   3.05424  2.57325  3.10370  0.18432     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     28   3.39368  0.13501  3.44479  2.80020     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     29   3.05424  2.57325  3.10370  0.18432     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     30   3.05424  2.57325  3.10370  0.18432     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     31   2.92353  3.55295  0.12104  3.45404     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     32   3.39368  0.13501  3.44479  2.80020     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     33   3.39368  0.13501  3.44479  2.80020     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     34   0.14649  3.34608  2.77966  3.24453     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     35   3.39368  0.13501  3.44479  2.80020     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     36   2.92353  3.55295  0.12104  3.45404     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     37   0.14649  3.34608  2.77966  3.24453     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     38   3.05424  2.57325  3.10370  0.18432     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     39   2.92353  3.55295  0.12104  3.45404     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     40   0.14649  3.34608  2.77966  3.24453     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     41   0.14649  3.34608  2.77966  3.24453     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     42   2.92353  3.55295  0.12104  3.45404     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     43   0.14649  3.34608  2.77966  3.24453     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     44   0.14649  3.34608  2.77966  3.24453     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     45   3.39368  0.13501  3.44479  2.80020     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01898  3.97364        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_sevenl_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:58:36 2012
NSEQ  6
EFFN  3.260742
CKSUM 1522618069
STATS LOCAL MSV       -7.9109  0.71931
STATS LOCAL VITERBI   -7.6232  0.71931
STATS LOCAL FORWARD   -4.3580  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33594  1.46037  1.37844  1.37450
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  0.00000        *
      1   0.14457  3.36023  2.78889  3.26000      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
      2   2.93350  3.56738  0.11941  3.46995      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
      3   0.14457  3.36023  2.78889  3.26000      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
      4   3.41001  0.13300  3.46044  2.81215      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
      5   3.06843  2.58230  3.11735  0.18196      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
      6   3.41001  0.13300  3.46044  2.81215      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
      7   3.06843  2.58230  3.11735  0.18196      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
      8   3.06843  2.58230  3.11735  0.18196      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
      9   2.93350  3.56738  0.11941  3.46995      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     10   2.93350  3.56738  0.11941  3.46995     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     11   3.41001  0.13300  3.46044  2.81215     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     12   0.14457  3.36023  2.78889  3.26000     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     13   0.14457  3.36023  2.78889  3.26000     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     14   3.06843  2.58230  3.11735  0.18196     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     15   2.93350  3.56738  0.11941  3.46995     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     16   2.93350  3.56738  0.11941  3.46995     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     17   0.14457  3.36023  2.78889  3.26000     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     18   3.06843  2.58230  3.11735  0.18196     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     19   0.14457  3.36023  2.78889  3.26000     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     20   3.06843  2.58230  3.11735  0.18196     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     21   3.41001  0.13300  3.46044  2.81215     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     22   3.06843  2.58230  3.11735  0.18196     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     23   3.41001  0.13300  3.46044  2.81215     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     24   2.93350  3.56738  0.11941  3.46995     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     25   2.93350  3.56738  0.11941  3.46995     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     26   3.41001  0.13300  3.46044  2.81215     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     27   3.06843  2.58230  3.11735  0.18196     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     28   3.41001  0.13300  3.46044  2.81215     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     29   3.06843  2.58230  3.11735  0.18196     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     30   3.06843  2.58230  3.11735  0.18196     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     31   2.93350  3.56738  0.11941  3.46995     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     32   3.41001  0.13300  3.46044  2.81215     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     33   0.14457  3.36023  2.78889  3.26000     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     34   3.06843  2.58230  3.11735  0.18196     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     35   3.41001  0.13300  3.46044  2.81215     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     36   2.93350  3.56738  0.11941  3.46995     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     37   0.14457  3.36023  2.78889  3.26000     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     38   3.06843  2.58230  3.11735  0.18196     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     39   2.93350  3.56738  0.11941  3.46995     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     40   0.14457  3.36023  2.78889  3.26000     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     41   0.14457  3.36023  2.78889  3.26000     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     42   2.93350  3.56738  0.11941  3.46995     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     43   0.14457  3.36023  2.78889  3.26000     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     44   0.14457  3.36023  2.78889  3.26000     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     45   3.41001  0.13300  3.46044  2.81215     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01883  3.98169        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_sevenm_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:58:41 2012
NSEQ  3
EFFN  3.000000
CKSUM 3456743413
STATS LOCAL MSV       -7.9235  0.72006
STATS LOCAL VITERBI   -7.5962  0.72006
STATS LOCAL FORWARD   -3.5311  0.72006
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28260  1.21341  1.44975  1.65613
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   0.15719  3.27118  2.73043  3.16274     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   0.15719  3.27118  2.73043  3.16274     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   3.30705  0.14631  3.36166  2.73626     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.97980  2.52563  3.03204  0.19727     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.97980  2.52563  3.03204  0.19727     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   0.15719  3.27118  2.73043  3.16274     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   0.15719  3.27118  2.73043  3.16274     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_sevenn_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:58:46 2012
NSEQ  3
EFFN  3.000000
CKSUM 239138404
STATS LOCAL MSV       -7.8873  0.72025
STATS LOCAL VITERBI   -7.6451  0.72025
STATS LOCAL FORWARD   -3.8332  0.72025
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40577  1.32699  1.38047  1.43511
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   0.15719  3.27118  2.73043  3.16274     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   3.30705  0.14631  3.36166  2.73626     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.97980  2.52563  3.03204  0.19727     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.97980  2.52563  3.03204  0.19727     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.97980  2.52563  3.03204  0.19727     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   0.15719  3.27118  2.73043  3.16274     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_seveno_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:58:53 2012
NSEQ  25
EFFN  3.305054
CKSUM 615057231
STATS LOCAL MSV       -8.1082  0.71933
STATS LOCAL VITERBI   -7.6429  0.71933
STATS LOCAL FORWARD   -3.7763  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.36993  1.20241  1.43339  1.57550
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  0.00000        *
      1   3.42658  0.13099  3.47632  2.82425      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
      2   2.94358  3.58201  0.11779  3.48608      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
      3   0.14264  3.37460  2.79825  3.27573      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
      4   3.42658  0.13099  3.47632  2.82425      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
      5   3.08290  2.59151  3.13127  0.17960      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
      6   3.42658  0.13099  3.47632  2.82425      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
      7   3.08290  2.59151  3.13127  0.17960      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
      8   3.42658  0.13099  3.47632  2.82425      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
      9   2.94358  3.58201  0.11779  3.48608      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     10   0.64013  2.55391  1.18659  2.41084     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     11   3.42658  0.13099  3.47632  2.82425     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     12   0.14264  3.37460  2.79825  3.27573     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     13   0.14264  3.37460  2.79825  3.27573     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     14   3.42658  0.13099  3.47632  2.82425     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     15   2.94358  3.58201  0.11779  3.48608     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     16   2.94358  3.58201  0.11779  3.48608     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     17   0.14264  3.37460  2.79825  3.27573     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     18   3.08290  2.59151  3.13127  0.17960     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     19   0.14264  3.37460  2.79825  3.27573     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     20   3.08290  2.59151  3.13127  0.17960     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     21   3.42658  0.13099  3.47632  2.82425     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     22   3.08290  2.59151  3.13127  0.17960     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     23   3.42658  0.13099  3.47632  2.82425     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     24   2.94358  3.58201  0.11779  3.48608     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     25   2.94358  3.58201  0.11779  3.48608     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     26   3.42658  0.13099  3.47632  2.82425     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     27   3.08290  2.59151  3.13127  0.17960     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     28   3.42658  0.13099  3.47632  2.82425     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     29   3.08290  2.59151  3.13127  0.17960     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     30   3.42658  0.13099  3.47632  2.82425     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     31   2.94358  3.58201  0.11779  3.48608     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     32   3.42658  0.13099  3.47632  2.82425     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     33   0.14264  3.37460  2.79825  3.27573     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     34   3.08290  2.59151  3.13127  0.17960     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     35   3.42658  0.13099  3.47632  2.82425     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     36   2.94358  3.58201  0.11779  3.48608     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     37   0.14264  3.37460  2.79825  3.27573     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     38   3.08290  2.59151  3.13127  0.17960     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     39   2.94358  3.58201  0.11779  3.48608     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     40   0.14264  3.37460  2.79825  3.27573     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     41   0.14264  3.37460  2.79825  3.27573     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     42   2.94358  3.58201  0.11779  3.48608     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     43   0.14264  3.37460  2.79825  3.27573     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     44   0.14264  3.37460  2.79825  3.27573     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
     45   3.42658  0.13099  3.47632  2.82425     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01867  3.98992        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_sevenp_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:58:57 2012
NSEQ  4
EFFN  3.191406
CKSUM 3224455691
STATS LOCAL MSV       -8.0922  0.71932
STATS LOCAL VITERBI   -7.4985  0.71932
STATS LOCAL FORWARD   -3.9868  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34156  1.26862  1.38126  1.57949
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  0.00000        *
      1   3.04545  2.56765  3.09524  0.18579      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      2   2.91732  3.54398  0.12206  3.44415      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      3   0.14770  3.33730  2.77393  3.23493      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      4   3.38354  0.13628  3.43507  2.79277      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      5   3.04545  2.56765  3.09524  0.18579      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      6   3.38354  0.13628  3.43507  2.79277      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      7   3.38354  0.13628  3.43507  2.79277      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      8   3.38354  0.13628  3.43507  2.79277      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      9   2.91732  3.54398  0.12206  3.44415      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     10   2.91732  3.54398  0.12206  3.44415     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     11   3.38354  0.13628  3.43507  2.79277     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     12   0.14770  3.33730  2.77393  3.23493     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     13   0.14770  3.33730  2.77393  3.23493     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     14   3.38354  0.13628  3.43507  2.79277     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     15   2.91732  3.54398  0.12206  3.44415     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     16   2.91732  3.54398  0.12206  3.44415     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     17   0.14770  3.33730  2.77393  3.23493     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     18   3.04545  2.56765  3.09524  0.18579     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     19   0.14770  3.33730  2.77393  3.23493     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     20   3.04545  2.56765  3.09524  0.18579     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     21   3.38354  0.13628  3.43507  2.79277     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     22   3.04545  2.56765  3.09524  0.18579     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     23   0.14770  3.33730  2.77393  3.23493     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     24   2.91732  3.54398  0.12206  3.44415     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     25   2.91732  3.54398  0.12206  3.44415     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     26   3.38354  0.13628  3.43507  2.79277     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     27   3.04545  2.56765  3.09524  0.18579     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     28   3.38354  0.13628  3.43507  2.79277     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     29   3.04545  2.56765  3.09524  0.18579     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     30   3.38354  0.13628  3.43507  2.79277     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     31   2.91732  3.54398  0.12206  3.44415     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     32   3.38354  0.13628  3.43507  2.79277     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     33   0.14770  3.33730  2.77393  3.23493     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     34   3.04545  2.56765  3.09524  0.18579     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     35   3.38354  0.13628  3.43507  2.79277     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     36   2.91732  3.54398  0.12206  3.44415     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     37   0.14770  3.33730  2.77393  3.23493     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     38   3.04545  2.56765  3.09524  0.18579     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     39   2.91732  3.54398  0.12206  3.44415     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     40   0.14770  3.33730  2.77393  3.23493     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     41   0.14770  3.33730  2.77393  3.23493     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     42   2.91732  3.54398  0.12206  3.44415     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     43   0.14770  3.33730  2.77393  3.23493     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     44   0.14770  3.33730  2.77393  3.23493     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     45   3.38354  0.13628  3.43507  2.79277     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01908  3.96867        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_sevenr_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:59:15 2012
NSEQ  74
EFFN  3.184204
CKSUM 2229931290
STATS LOCAL MSV       -8.1546  0.71932
STATS LOCAL VITERBI   -7.7675  0.71932
STATS LOCAL FORWARD   -3.8541  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40873  1.20772  1.38372  1.57976
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  0.00000        *
      1   3.38075  0.13663  3.43240  2.79072      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
      2   2.91561  3.54151  0.12235  3.44143      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
      3   0.14804  3.33489  2.77235  3.23229      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
      4   3.38075  0.13663  3.43240  2.79072      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
      5   3.04304  2.56611  3.09292  0.18620      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
      6   3.38075  0.13663  3.43240  2.79072      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
      7   3.04304  2.56611  3.09292  0.18620      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
      8   3.38075  0.13663  3.43240  2.79072      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
      9   2.91561  3.54151  0.12235  3.44143      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     10   2.91561  3.54151  0.12235  3.44143     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     11   3.38075  0.13663  3.43240  2.79072     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     12   0.14804  3.33489  2.77235  3.23229     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     13   0.14804  3.33489  2.77235  3.23229     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     14   3.38075  0.13663  3.43240  2.79072     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     15   2.91561  3.54151  0.12235  3.44143     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     16   2.91561  3.54151  0.12235  3.44143     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     17   0.14804  3.33489  2.77235  3.23229     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     18   3.04304  2.56611  3.09292  0.18620     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     19   0.14804  3.33489  2.77235  3.23229     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     20   3.04304  2.56611  3.09292  0.18620     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     21   3.38075  0.13663  3.43240  2.79072     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     22   3.04304  2.56611  3.09292  0.18620     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     23   3.38075  0.13663  3.43240  2.79072     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     24   2.91561  3.54151  0.12235  3.44143     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     25   2.91561  3.54151  0.12235  3.44143     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     26   3.38075  0.13663  3.43240  2.79072     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     27   3.04304  2.56611  3.09292  0.18620     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     28   3.38075  0.13663  3.43240  2.79072     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     29   3.04304  2.56611  3.09292  0.18620     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     30   3.38075  0.13663  3.43240  2.79072     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     31   2.91561  3.54151  0.12235  3.44143     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     32   3.38075  0.13663  3.43240  2.79072     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     33   0.14804  3.33489  2.77235  3.23229     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     34   3.04304  2.56611  3.09292  0.18620     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     35   3.38075  0.13663  3.43240  2.79072     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     36   2.91561  3.54151  0.12235  3.44143     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     37   0.14804  3.33489  2.77235  3.23229     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     38   3.04304  2.56611  3.09292  0.18620     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     39   2.91561  3.54151  0.12235  3.44143     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     40   0.14804  3.33489  2.77235  3.23229     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     41   0.14804  3.33489  2.77235  3.23229     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     42   2.91561  3.54151  0.12235  3.44143     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     43   0.14804  3.33489  2.77235  3.23229     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     44   0.14804  3.33489  2.77235  3.23229     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
     45   3.38075  0.13663  3.43240  2.79072     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01911  3.96731        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_sevens_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:59:22 2012
NSEQ  26
EFFN  3.310303
CKSUM 3119625533
STATS LOCAL MSV       -8.1714  0.71932
STATS LOCAL VITERBI   -7.5462  0.71932
STATS LOCAL FORWARD   -4.0110  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33741  1.25636  1.37825  1.60561
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  0.00000        *
      1   3.42853  0.13075  3.47818  2.82567      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
      2   2.94476  3.58372  0.11760  3.48798      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
      3   0.14242  3.37629  2.79934  3.27758      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
      4   3.42853  0.13075  3.47818  2.82567      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
      5   3.08460  2.59259  3.13291  0.17932      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
      6   3.42853  0.13075  3.47818  2.82567      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
      7   2.48923  1.32755  2.55816  0.55433      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
      8   3.42853  0.13075  3.47818  2.82567      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
      9   2.94476  3.58372  0.11760  3.48798      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     10   2.94476  3.58372  0.11760  3.48798     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     11   3.42853  0.13075  3.47818  2.82567     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     12   0.14242  3.37629  2.79934  3.27758     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     13   0.14242  3.37629  2.79934  3.27758     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     14   3.42853  0.13075  3.47818  2.82567     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     15   2.94476  3.58372  0.11760  3.48798     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     16   2.94476  3.58372  0.11760  3.48798     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     17   0.14242  3.37629  2.79934  3.27758     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     18   3.08460  2.59259  3.13291  0.17932     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     19   0.14242  3.37629  2.79934  3.27758     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     20   3.08460  2.59259  3.13291  0.17932     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     21   3.10916  0.21109  3.16829  2.26736     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     22   3.08460  2.59259  3.13291  0.17932     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     23   0.14242  3.37629  2.79934  3.27758     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     24   2.94476  3.58372  0.11760  3.48798     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     25   2.94476  3.58372  0.11760  3.48798     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     26   3.42853  0.13075  3.47818  2.82567     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     27   3.08460  2.59259  3.13291  0.17932     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     28   3.42853  0.13075  3.47818  2.82567     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     29   3.08460  2.59259  3.13291  0.17932     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     30   3.42853  0.13075  3.47818  2.82567     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     31   2.94476  3.58372  0.11760  3.48798     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     32   3.42853  0.13075  3.47818  2.82567     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     33   0.14242  3.37629  2.79934  3.27758     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     34   3.08460  2.59259  3.13291  0.17932     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     35   3.42853  0.13075  3.47818  2.82567     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     36   2.94476  3.58372  0.11760  3.48798     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     37   0.14242  3.37629  2.79934  3.27758     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     38   3.08460  2.59259  3.13291  0.17932     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     39   2.94476  3.58372  0.11760  3.48798     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     40   0.14242  3.37629  2.79934  3.27758     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     41   0.14242  3.37629  2.79934  3.27758     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     42   2.94476  3.58372  0.11760  3.48798     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     43   0.14242  3.37629  2.79934  3.27758     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     44   0.14242  3.37629  2.79934  3.27758     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
     45   3.42853  0.13075  3.47818  2.82567     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01866  3.99089        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_sevent_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:59:29 2012
NSEQ  45
EFFN  3.331604
CKSUM 206813971
STATS LOCAL MSV       -8.1957  0.71932
STATS LOCAL VITERBI   -7.6561  0.71932
STATS LOCAL FORWARD   -3.8955  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.38293  1.23894  1.37747  1.57383
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  0.00000        *
      1   3.43639  0.12982  3.48571  2.83139      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
      2   2.94952  3.59065  0.11684  3.49562      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
      3   0.14152  3.38311  2.80378  3.28505      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
      4   3.43639  0.12982  3.48571  2.83139      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
      5   3.09149  2.59697  3.13953  0.17821      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
      6   3.43639  0.12982  3.48571  2.83139      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
      7   3.09149  2.59697  3.13953  0.17821      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
      8   3.43639  0.12982  3.48571  2.83139      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
      9   2.94952  3.59065  0.11684  3.49562      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     10   2.94952  3.59065  0.11684  3.49562     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     11   3.43639  0.12982  3.48571  2.83139     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     12   0.14152  3.38311  2.80378  3.28505     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     13   0.14152  3.38311  2.80378  3.28505     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     14   3.43639  0.12982  3.48571  2.83139     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     15   2.94952  3.59065  0.11684  3.49562     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     16   2.94952  3.59065  0.11684  3.49562     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     17   0.14152  3.38311  2.80378  3.28505     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     18   3.09149  2.59697  3.13953  0.17821     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     19   0.14152  3.38311  2.80378  3.28505     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     20   3.09149  2.59697  3.13953  0.17821     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     21   3.43639  0.12982  3.48571  2.83139     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     22   3.09149  2.59697  3.13953  0.17821     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     23   1.05652  0.92289  2.14755  1.97908     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     24   2.94952  3.59065  0.11684  3.49562     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     25   2.94952  3.59065  0.11684  3.49562     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     26   3.43639  0.12982  3.48571  2.83139     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     27   3.09149  2.59697  3.13953  0.17821     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     28   3.43639  0.12982  3.48571  2.83139     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     29   3.09149  2.59697  3.13953  0.17821     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     30   3.43639  0.12982  3.48571  2.83139     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     31   2.94952  3.59065  0.11684  3.49562     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     32   3.43639  0.12982  3.48571  2.83139     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     33   0.14152  3.38311  2.80378  3.28505     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     34   3.09149  2.59697  3.13953  0.17821     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     35   3.43639  0.12982  3.48571  2.83139     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     36   2.94952  3.59065  0.11684  3.49562     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     37   0.14152  3.38311  2.80378  3.28505     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     38   3.09149  2.59697  3.13953  0.17821     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     39   2.94952  3.59065  0.11684  3.49562     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     40   0.14152  3.38311  2.80378  3.28505     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     41   0.14152  3.38311  2.80378  3.28505     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     42   2.94952  3.59065  0.11684  3.49562     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     43   0.14152  3.38311  2.80378  3.28505     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     44   0.14152  3.38311  2.80378  3.28505     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
     45   3.43639  0.12982  3.48571  2.83139     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01858  3.99482        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_sevenu_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:59:44 2012
NSEQ  29
EFFN  3.196655
CKSUM 1208045264
STATS LOCAL MSV       -8.0269  0.71932
STATS LOCAL VITERBI   -7.6133  0.71932
STATS LOCAL FORWARD   -3.7499  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34312  1.20706  1.45348  1.57920
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  0.00000        *
      1   3.38556  0.13603  3.43701  2.79425      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
      2   2.91856  3.54577  0.12186  3.44613      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
      3   0.14746  3.33905  2.77507  3.23685      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
      4   3.38556  0.13603  3.43701  2.79425      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
      5   3.04720  2.56877  3.09693  0.18550      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
      6   3.38556  0.13603  3.43701  2.79425      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
      7   3.04720  2.56877  3.09693  0.18550      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
      8   3.38556  0.13603  3.43701  2.79425      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
      9   2.91856  3.54577  0.12186  3.44613      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     10   0.14746  3.33905  2.77507  3.23685     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     11   3.38556  0.13603  3.43701  2.79425     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     12   0.14746  3.33905  2.77507  3.23685     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     13   0.14746  3.33905  2.77507  3.23685     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     14   3.38556  0.13603  3.43701  2.79425     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     15   2.91856  3.54577  0.12186  3.44613     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     16   2.91856  3.54577  0.12186  3.44613     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     17   0.14746  3.33905  2.77507  3.23685     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     18   3.04720  2.56877  3.09693  0.18550     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     19   0.14746  3.33905  2.77507  3.23685     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     20   3.04720  2.56877  3.09693  0.18550     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     21   3.38556  0.13603  3.43701  2.79425     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     22   3.04720  2.56877  3.09693  0.18550     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     23   3.38556  0.13603  3.43701  2.79425     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     24   2.91856  3.54577  0.12186  3.44613     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     25   2.91856  3.54577  0.12186  3.44613     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     26   3.38556  0.13603  3.43701  2.79425     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     27   3.04720  2.56877  3.09693  0.18550     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     28   3.38556  0.13603  3.43701  2.79425     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     29   3.04720  2.56877  3.09693  0.18550     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     30   3.38556  0.13603  3.43701  2.79425     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     31   2.91856  3.54577  0.12186  3.44613     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     32   3.38556  0.13603  3.43701  2.79425     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     33   0.14746  3.33905  2.77507  3.23685     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     34   3.04720  2.56877  3.09693  0.18550     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     35   3.38556  0.13603  3.43701  2.79425     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     36   2.91856  3.54577  0.12186  3.44613     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     37   0.14746  3.33905  2.77507  3.23685     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     38   3.04720  2.56877  3.09693  0.18550     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     39   2.91856  3.54577  0.12186  3.44613     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     40   0.14746  3.33905  2.77507  3.23685     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     41   0.14746  3.33905  2.77507  3.23685     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     42   2.91856  3.54577  0.12186  3.44613     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     43   0.14746  3.33905  2.77507  3.23685     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     44   0.14746  3.33905  2.77507  3.23685     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
     45   3.38556  0.13603  3.43701  2.79425     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01906  3.96966        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_six_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:57:14 2012
NSEQ  25
EFFN  3.634644
CKSUM 3375772547
STATS LOCAL MSV       -7.6909  0.71933
STATS LOCAL VITERBI   -7.6485  0.71933
STATS LOCAL FORWARD   -4.2957  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.41402  1.35683  1.31536  1.46541
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  0.00000        *
      1   3.01261  3.68311  0.10724  3.59789      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
      2   3.01261  3.68311  0.10724  3.59789      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
      3   0.20058  3.22612  2.32391  3.12033      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
      4   3.54206  0.11793  3.58677  2.90766      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
      5   3.18542  2.65659  3.22983  0.16383      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
      6   3.54206  0.11793  3.58677  2.90766      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
      7   2.45961  0.91446  2.53114  0.83418      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
      8   3.54206  0.11793  3.58677  2.90766      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
      9   1.15707  2.62856  0.63457  2.48594      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     10   0.63166  2.60938  1.17129  2.46809     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     11   3.54206  0.11793  3.58677  2.90766     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     12   0.12998  3.47513  2.86322  3.38593     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     13   0.12998  3.47513  2.86322  3.38593     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     14   3.18542  2.65659  3.22983  0.16383     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     15   3.01261  3.68311  0.10724  3.59789     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     16   3.01261  3.68311  0.10724  3.59789     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     17   0.12998  3.47513  2.86322  3.38593     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     18   3.18542  2.65659  3.22983  0.16383     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     19   0.12998  3.47513  2.86322  3.38593     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     20   3.18542  2.65659  3.22983  0.16383     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     21   3.54206  0.11793  3.58677  2.90766     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     22   3.18542  2.65659  3.22983  0.16383     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     23   3.18542  2.65659  3.22983  0.16383     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     24   3.01261  3.68311  0.10724  3.59789     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     25   3.01261  3.68311  0.10724  3.59789     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     26   3.54206  0.11793  3.58677  2.90766     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     27   3.18542  2.65659  3.22983  0.16383     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     28   3.54206  0.11793  3.58677  2.90766     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     29   3.18542  2.65659  3.22983  0.16383     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     30   3.54206  0.11793  3.58677  2.90766     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     31   3.01261  3.68311  0.10724  3.59789     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     32   3.54206  0.11793  3.58677  2.90766     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     33   0.12998  3.47513  2.86322  3.38593     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     34   3.18542  2.65659  3.22983  0.16383     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     35   3.54206  0.11793  3.58677  2.90766     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     36   3.01261  3.68311  0.10724  3.59789     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     37   0.12998  3.47513  2.86322  3.38593     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     38   3.18542  2.65659  3.22983  0.16383     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     39   3.01261  3.68311  0.10724  3.59789     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     40   0.12998  3.47513  2.86322  3.38593     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     41   0.12998  3.47513  2.86322  3.38593     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     42   3.01261  3.68311  0.10724  3.59789     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     43   0.12998  3.47513  2.86322  3.38593     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     44   3.01261  3.68311  0.10724  3.59789     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
     45   3.54206  0.11793  3.58677  2.90766     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01759  4.04911        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_ten_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:14:50 2012
NSEQ  8
EFFN  3.410156
CKSUM 2247624815
STATS LOCAL MSV       -7.6172  0.71932
STATS LOCAL VITERBI   -7.5031  0.71932
STATS LOCAL FORWARD   -4.1590  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33211  1.33801  1.36527  1.52141
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  0.00000        *
      1   2.29532  0.53992  1.62521  2.12354      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
      2   2.96668  3.61569  0.11415  3.52327      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
      3   0.13830  3.40786  2.81982  3.31216      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
      4   3.46489  0.12648  3.51299  2.85207      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
      5   3.11656  2.61290  3.16364  0.17424      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
      6   3.46489  0.12648  3.51299  2.85207      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
      7   3.11656  2.61290  3.16364  0.17424      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
      8   3.46489  0.12648  3.51299  2.85207      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
      9   2.96668  3.61569  0.11415  3.52327      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     10   2.96668  3.61569  0.11415  3.52327     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     11   3.46489  0.12648  3.51299  2.85207     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     12   0.13830  3.40786  2.81982  3.31216     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     13   0.13830  3.40786  2.81982  3.31216     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     14   2.61100  1.55260  2.67637  0.43691     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     15   2.96668  3.61569  0.11415  3.52327     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     16   2.96668  3.61569  0.11415  3.52327     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     17   0.13830  3.40786  2.81982  3.31216     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     18   3.11656  2.61290  3.16364  0.17424     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     19   0.13830  3.40786  2.81982  3.31216     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     20   3.11656  2.61290  3.16364  0.17424     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     21   3.46489  0.12648  3.51299  2.85207     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     22   3.11656  2.61290  3.16364  0.17424     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     23   0.13830  3.40786  2.81982  3.31216     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     24   2.96668  3.61569  0.11415  3.52327     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     25   2.96668  3.61569  0.11415  3.52327     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     26   3.46489  0.12648  3.51299  2.85207     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     27   3.11656  2.61290  3.16364  0.17424     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     28   3.46489  0.12648  3.51299  2.85207     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     29   3.11656  2.61290  3.16364  0.17424     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     30   3.46489  0.12648  3.51299  2.85207     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     31   2.96668  3.61569  0.11415  3.52327     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     32   3.46489  0.12648  3.51299  2.85207     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     33   0.13830  3.40786  2.81982  3.31216     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     34   3.11656  2.61290  3.16364  0.17424     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     35   3.46489  0.12648  3.51299  2.85207     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     36   2.96668  3.61569  0.11415  3.52327     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     37   0.13830  3.40786  2.81982  3.31216     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     38   3.11656  2.61290  3.16364  0.17424     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     39   2.96668  3.61569  0.11415  3.52327     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     40   0.13830  3.40786  2.81982  3.31216     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     41   0.13830  3.40786  2.81982  3.31216     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     42   2.96668  3.61569  0.11415  3.52327     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     43   0.13830  3.40786  2.81982  3.31216     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     44   0.13830  3.40786  2.81982  3.31216     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     45   3.46489  0.12648  3.51299  2.85207     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01832  4.00918        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:55:24 2012
NSEQ  2
EFFN  2.000000
CKSUM 3870492215
STATS LOCAL MSV       -7.3319  0.72969
STATS LOCAL VITERBI   -8.2230  0.72969
STATS LOCAL FORWARD   -3.4162  0.72969
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26546  1.40829  1.55378  1.33987
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.15554  1.00938  2.23102  0.88601     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   0.23862  2.84929  2.43386  2.70756     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.23862  2.84929  2.43386  2.70756     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   1.01448  1.11006  1.95471  1.79419     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.81865  0.23582  2.88868  2.35662     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_twelve_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 16:15:47 2012
NSEQ  2
EFFN  2.000000
CKSUM 3193425339
STATS LOCAL MSV       -7.4743  0.72839
STATS LOCAL VITERBI   -8.4610  0.72839
STATS LOCAL FORWARD   -3.5279  0.72839
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.18443  1.58899  1.49130  1.32852
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.23862  2.84929  2.43386  2.70756     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.53331  3.02441  0.20344  2.88069     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Tracheophyta_58S_start_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 17 15:55:14 2012
NSEQ  33
EFFN  4.088745
CKSUM 2745058666
STATS LOCAL MSV       -7.3007  0.71933
STATS LOCAL VITERBI   -7.4981  0.71933
STATS LOCAL FORWARD   -4.0745  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.24255  1.32691  1.51870  1.48254
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  0.00000        *
      1   3.08151  0.26039  3.14187  1.96496      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
      2   2.24934  2.22887  0.33370  2.65056      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
      3   0.11631  3.59700  2.94148  3.51985      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
      4   3.68053  0.10420  3.71889  3.00607      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
      5   3.31305  2.73756  3.35243  0.14634      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
      6   3.68053  0.10420  3.71889  3.00607      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
      7   3.31305  2.73756  3.35243  0.14634      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
      8   3.68053  0.10420  3.71889  3.00607      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
      9   0.11631  3.59700  2.94148  3.51985      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     10   1.36081  2.35748  0.58452  2.39123     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     11   3.68053  0.10420  3.71889  3.00607     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     12   0.11631  3.59700  2.94148  3.51985     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     13   0.11631  3.59700  2.94148  3.51985     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     14   2.99284  0.29746  3.05557  1.83222     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     15   1.64325  2.96875  0.36128  2.83874     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     16   2.61746  3.59547  0.13977  3.50636     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     17   0.11631  3.59700  2.94148  3.51985     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     18   3.31305  2.73756  3.35243  0.14634     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     19   0.11631  3.59700  2.94148  3.51985     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     20   3.31305  2.73756  3.35243  0.14634     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     21   3.68053  0.10420  3.71889  3.00607     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     22   3.31305  2.73756  3.35243  0.14634     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     23   3.31305  2.73756  3.35243  0.14634     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     24   3.09344  3.80283  0.09610  3.73076     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     25   3.09344  3.80283  0.09610  3.73076     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     26   3.68053  0.10420  3.71889  3.00607     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     27   3.31305  2.73756  3.35243  0.14634     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     28   3.68053  0.10420  3.71889  3.00607     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     29   3.06578  2.13738  3.11637  0.23433     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     30   2.99489  1.99380  3.04848  0.26612     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     31   3.09344  3.80283  0.09610  3.73076     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     32   3.68053  0.10420  3.71889  3.00607     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     33   0.26910  2.27149  2.63136  2.80031     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     34   0.11631  3.59700  2.94148  3.51985     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     35   2.77040  0.31631  2.50093  2.06733     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     36   3.09344  3.80283  0.09610  3.73076     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     37   0.11631  3.59700  2.94148  3.51985     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     38   3.31305  2.73756  3.35243  0.14634     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     39   3.09344  3.80283  0.09610  3.73076     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     40   0.11631  3.59700  2.94148  3.51985     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     41   0.11631  3.59700  2.94148  3.51985     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     42   3.09344  3.80283  0.09610  3.73076     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     43   0.11631  3.59700  2.94148  3.51985     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     44   0.11631  3.59700  2.94148  3.51985     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
     45   3.68053  0.10420  3.71889  3.00607     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01629  4.12532        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_eight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:11:54 2012
NSEQ  2
EFFN  2.000000
CKSUM 4159611321
STATS LOCAL MSV       -7.6630  0.72772
STATS LOCAL VITERBI   -8.2445  0.72772
STATS LOCAL FORWARD   -3.1773  0.72772
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39536  1.28586  1.21082  1.72659
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.81865  0.23582  2.88868  2.35662     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.15554  1.00938  2.23102  0.88601     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_eighteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:20:42 2012
NSEQ  33
EFFN  3.331421
CKSUM 3818006769
STATS LOCAL MSV       -8.2061  0.71933
STATS LOCAL VITERBI   -7.9142  0.71933
STATS LOCAL FORWARD   -3.6602  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33233  1.18916  1.25067  1.92862
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  0.00000        *
      1   0.14153  3.38306  2.80374  3.28498      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
      2   2.57793  1.52098  2.64414  0.45491      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
      3   2.94948  3.59059  0.11685  3.49555      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
      4   3.43633  0.12982  3.48565  2.83134      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
      5   2.94948  3.59059  0.11685  3.49555      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
      6   0.14153  3.38306  2.80374  3.28498      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
      7   3.43633  0.12982  3.48565  2.83134      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
      8   3.43633  0.12982  3.48565  2.83134      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
      9   3.43633  0.12982  3.48565  2.83134      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     10   3.43633  0.12982  3.48565  2.83134     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     11   0.14153  3.38306  2.80374  3.28498     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     12   2.94948  3.59059  0.11685  3.49555     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     13   2.94948  3.59059  0.11685  3.49555     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     14   0.14153  3.38306  2.80374  3.28498     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     15   2.41105  1.01266  2.48283  0.76891     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     16   2.94948  3.59059  0.11685  3.49555     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     17   2.94948  3.59059  0.11685  3.49555     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     18   2.81354  3.03622  0.16108  3.19986     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     19   3.43633  0.12982  3.48565  2.83134     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     20   2.94948  3.59059  0.11685  3.49555     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     21   0.14153  3.38306  2.80374  3.28498     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     22   2.94948  3.59059  0.11685  3.49555     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     23   0.14153  3.38306  2.80374  3.28498     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     24   3.43633  0.12982  3.48565  2.83134     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     25   3.43633  0.12982  3.48565  2.83134     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     26   0.14153  3.38306  2.80374  3.28498     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     27   3.43633  0.12982  3.48565  2.83134     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     28   3.43633  0.12982  3.48565  2.83134     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     29   3.43633  0.12982  3.48565  2.83134     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     30   2.94948  3.59059  0.11685  3.49555     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     31   3.43633  0.12982  3.48565  2.83134     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     32   3.17556  0.19247  3.23275  2.36594     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     33   2.94948  3.59059  0.11685  3.49555     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     34   0.14153  3.38306  2.80374  3.28498     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     35   2.94948  3.59059  0.11685  3.49555     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     36   3.09143  2.59694  3.13948  0.17822     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     37   3.09143  2.59694  3.13948  0.17822     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     38   3.09143  2.59694  3.13948  0.17822     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     39   0.14153  3.38306  2.80374  3.28498     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     40   0.14153  3.38306  2.80374  3.28498     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     41   2.94948  3.59059  0.11685  3.49555     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     42   3.43633  0.12982  3.48565  2.83134     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     43   0.14153  3.38306  2.80374  3.28498     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     44   3.09143  2.59694  3.13948  0.17822     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
     45   0.14153  3.38306  2.80374  3.28498     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01858  3.99479        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_elevena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:14:33 2012
NSEQ  2
EFFN  2.000000
CKSUM 200537437
STATS LOCAL MSV       -7.4731  0.72765
STATS LOCAL VITERBI   -8.1305  0.72765
STATS LOCAL FORWARD   -3.3552  0.72765
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40083  1.29332  1.32030  1.55025
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_elevenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:14:40 2012
NSEQ  2
EFFN  2.000000
CKSUM 4000050501
STATS LOCAL MSV       -7.5058  0.72832
STATS LOCAL VITERBI   -8.1521  0.72832
STATS LOCAL FORWARD   -3.3219  0.72832
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34045  1.32657  1.37234  1.51698
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   0.23862  2.84929  2.43386  2.70756     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.15554  1.00938  2.23102  0.88601     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_elevenc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:14:47 2012
NSEQ  6
EFFN  3.295898
CKSUM 3809853014
STATS LOCAL MSV       -8.2212  0.71931
STATS LOCAL VITERBI   -7.9664  0.71931
STATS LOCAL FORWARD   -3.6492  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33326  1.18308  1.24824  1.94465
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  0.00000        *
      1   0.14304  3.37165  2.79633  3.27250      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
      2   2.40035  0.95194  2.47256  0.82336      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
      3   2.94151  3.57901  0.11812  3.48277      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
      4   3.42318  0.13140  3.47306  2.82176      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
      5   2.94151  3.57901  0.11812  3.48277      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
      6   0.14304  3.37165  2.79633  3.27250      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
      7   3.42318  0.13140  3.47306  2.82176      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
      8   3.42318  0.13140  3.47306  2.82176      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
      9   3.42318  0.13140  3.47306  2.82176      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     10   3.42318  0.13140  3.47306  2.82176     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     11   0.14304  3.37165  2.79633  3.27250     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     12   2.94151  3.57901  0.11812  3.48277     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     13   2.94151  3.57901  0.11812  3.48277     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     14   0.14304  3.37165  2.79633  3.27250     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     15   2.49506  1.35028  2.56376  0.54245     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     16   2.94151  3.57901  0.11812  3.48277     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     17   2.94151  3.57901  0.11812  3.48277     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     18   2.94151  3.57901  0.11812  3.48277     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     19   3.42318  0.13140  3.47306  2.82176     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     20   2.94151  3.57901  0.11812  3.48277     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     21   0.14304  3.37165  2.79633  3.27250     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     22   2.94151  3.57901  0.11812  3.48277     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     23   0.14304  3.37165  2.79633  3.27250     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     24   3.42318  0.13140  3.47306  2.82176     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     25   3.42318  0.13140  3.47306  2.82176     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     26   0.14304  3.37165  2.79633  3.27250     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     27   3.42318  0.13140  3.47306  2.82176     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     28   3.42318  0.13140  3.47306  2.82176     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     29   3.42318  0.13140  3.47306  2.82176     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     30   2.94151  3.57901  0.11812  3.48277     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     31   3.42318  0.13140  3.47306  2.82176     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     32   3.42318  0.13140  3.47306  2.82176     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     33   2.94151  3.57901  0.11812  3.48277     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     34   0.14304  3.37165  2.79633  3.27250     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     35   2.94151  3.57901  0.11812  3.48277     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     36   3.07992  2.58962  3.12841  0.18008     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     37   3.07992  2.58962  3.12841  0.18008     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     38   3.07992  2.58962  3.12841  0.18008     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     39   0.14304  3.37165  2.79633  3.27250     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     40   0.14304  3.37165  2.79633  3.27250     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     41   2.94151  3.57901  0.11812  3.48277     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     42   3.42318  0.13140  3.47306  2.82176     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     43   0.14304  3.37165  2.79633  3.27250     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     44   3.07992  2.58962  3.12841  0.18008     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
     45   0.14304  3.37165  2.79633  3.27250     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01871  3.98822        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_elevend_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:14:53 2012
NSEQ  2
EFFN  2.000000
CKSUM 3816763266
STATS LOCAL MSV       -7.6158  0.72756
STATS LOCAL VITERBI   -8.0459  0.72756
STATS LOCAL FORWARD   -3.4869  0.72756
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.45842  1.29740  1.26599  1.55024
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_elevene_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:15:00 2012
NSEQ  95
EFFN  3.325348
CKSUM 977022747
STATS LOCAL MSV       -8.2525  0.71931
STATS LOCAL VITERBI   -7.5496  0.71931
STATS LOCAL FORWARD   -4.0188  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39073  1.34440  1.20697  1.65387
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  0.00000        *
      1   0.14178  3.38112  2.80248  3.28286      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
      2   2.81301  0.33032  2.87951  1.80109      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
      3   2.94812  3.58862  0.11706  3.49338      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
      4   0.14178  3.38112  2.80248  3.28286      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
      5   2.94812  3.58862  0.11706  3.49338      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
      6   0.14178  3.38112  2.80248  3.28286      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
      7   3.43409  0.13009  3.48351  2.82971      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
      8   3.43409  0.13009  3.48351  2.82971      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
      9   3.08947  2.59569  3.13759  0.17854      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     10   3.43409  0.13009  3.48351  2.82971     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     11   0.14178  3.38112  2.80248  3.28286     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     12   2.94812  3.58862  0.11706  3.49338     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     13   2.94812  3.58862  0.11706  3.49338     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     14   3.08947  2.59569  3.13759  0.17854     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     15   3.43409  0.13009  3.48351  2.82971     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     16   0.14178  3.38112  2.80248  3.28286     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     17   2.75201  3.20744  0.18382  2.75424     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     18   2.94812  3.58862  0.11706  3.49338     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     19   3.43409  0.13009  3.48351  2.82971     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     20   2.94812  3.58862  0.11706  3.49338     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     21   2.94812  3.58862  0.11706  3.49338     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     22   2.94812  3.58862  0.11706  3.49338     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     23   2.94812  3.58862  0.11706  3.49338     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     24   3.43409  0.13009  3.48351  2.82971     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     25   3.08947  2.59569  3.13759  0.17854     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     26   0.14178  3.38112  2.80248  3.28286     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     27   3.43409  0.13009  3.48351  2.82971     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     28   3.43409  0.13009  3.48351  2.82971     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     29   3.43409  0.13009  3.48351  2.82971     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     30   2.94812  3.58862  0.11706  3.49338     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     31   3.43409  0.13009  3.48351  2.82971     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     32   3.08947  2.59569  3.13759  0.17854     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     33   2.94812  3.58862  0.11706  3.49338     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     34   0.14178  3.38112  2.80248  3.28286     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     35   2.00758  3.04727  0.26875  2.92129     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     36   3.08947  2.59569  3.13759  0.17854     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     37   3.08947  2.59569  3.13759  0.17854     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     38   3.08947  2.59569  3.13759  0.17854     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     39   0.14178  3.38112  2.80248  3.28286     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     40   0.14178  3.38112  2.80248  3.28286     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     41   2.58108  3.40516  0.15757  3.29989     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     42   3.43409  0.13009  3.48351  2.82971     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     43   0.14178  3.38112  2.80248  3.28286     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     44   3.08947  2.59569  3.13759  0.17854     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
     45   0.14178  3.38112  2.80248  3.28286     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01860  3.99367        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_elevenf_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:15:07 2012
NSEQ  4
EFFN  3.152344
CKSUM 36996361
STATS LOCAL MSV       -8.2659  0.71931
STATS LOCAL VITERBI   -7.8471  0.71931
STATS LOCAL FORWARD   -3.9177  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40470  1.27199  1.25449  1.66568
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  0.00000        *
      1   0.14954  3.32415  2.76532  3.22056      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      2   3.36834  0.13821  3.42049  2.78160      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      3   2.90797  3.53050  0.12362  3.42932      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      4   3.36834  0.13821  3.42049  2.78160      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      5   2.90797  3.53050  0.12362  3.42932      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      6   0.14954  3.32415  2.76532  3.22056      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      7   3.36834  0.13821  3.42049  2.78160      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      8   3.36834  0.13821  3.42049  2.78160      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      9   3.36834  0.13821  3.42049  2.78160      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     10   3.36834  0.13821  3.42049  2.78160     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     11   0.14954  3.32415  2.76532  3.22056     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     12   2.90797  3.53050  0.12362  3.42932     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     13   2.90797  3.53050  0.12362  3.42932     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     14   3.03232  2.55926  3.08260  0.18802     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     15   3.36834  0.13821  3.42049  2.78160     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     16   0.14954  3.32415  2.76532  3.22056     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     17   2.90797  3.53050  0.12362  3.42932     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     18   2.90797  3.53050  0.12362  3.42932     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     19   3.36834  0.13821  3.42049  2.78160     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     20   2.90797  3.53050  0.12362  3.42932     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     21   2.90797  3.53050  0.12362  3.42932     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     22   2.90797  3.53050  0.12362  3.42932     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     23   2.90797  3.53050  0.12362  3.42932     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     24   3.03232  2.55926  3.08260  0.18802     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     25   3.03232  2.55926  3.08260  0.18802     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     26   0.14954  3.32415  2.76532  3.22056     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     27   3.36834  0.13821  3.42049  2.78160     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     28   3.36834  0.13821  3.42049  2.78160     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     29   3.36834  0.13821  3.42049  2.78160     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     30   2.90797  3.53050  0.12362  3.42932     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     31   3.36834  0.13821  3.42049  2.78160     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     32   3.03232  2.55926  3.08260  0.18802     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     33   2.90797  3.53050  0.12362  3.42932     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     34   0.14954  3.32415  2.76532  3.22056     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     35   0.14954  3.32415  2.76532  3.22056     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     36   3.03232  2.55926  3.08260  0.18802     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     37   3.03232  2.55926  3.08260  0.18802     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     38   3.03232  2.55926  3.08260  0.18802     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     39   0.14954  3.32415  2.76532  3.22056     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     40   0.14954  3.32415  2.76532  3.22056     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     41   2.90797  3.53050  0.12362  3.42932     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     42   3.36834  0.13821  3.42049  2.78160     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     43   0.14954  3.32415  2.76532  3.22056     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     44   3.03232  2.55926  3.08260  0.18802     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     45   0.14954  3.32415  2.76532  3.22056     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01922  3.96126        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_eleveng_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:15:15 2012
NSEQ  344
EFFN  4.233337
CKSUM 1202060389
STATS LOCAL MSV       -6.8339  0.71933
STATS LOCAL VITERBI   -7.6903  0.71933
STATS LOCAL FORWARD   -3.9091  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.44187  1.24554  1.23728  1.68439
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  0.00000        *
      1   1.20841  1.13138  1.91937  1.46084      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
      2   1.97635  0.81204  2.05225  1.24124      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
      3   2.75429  3.48717  0.13644  3.40216      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
      4   2.96058  0.21395  3.02381  2.38373      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
      5   3.07463  3.74265  0.10550  3.49902      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
      6   0.12189  3.59463  2.85353  3.51840      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
      7   3.61242  0.12118  3.65360  2.79289      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
      8   3.72015  0.10061  3.75665  3.03400      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
      9   3.35125  0.18106  3.40307  2.32989      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     10   3.50821  0.13083  3.33406  2.86402     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     11   0.13598  3.48607  2.90585  3.17447     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     12   3.11636  3.83684  0.09317  3.76856     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     13   3.11636  3.83684  0.09317  3.76856     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     14   3.29803  2.61097  3.33834  0.15772     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     15   3.72015  0.10061  3.75665  3.03400     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     16   0.11265  3.63223  2.96414  3.55860     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     17   3.07489  3.74322  0.10542  3.50050     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     18   2.80390  3.71556  0.11793  3.63713     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     19   3.54721  0.13460  3.59123  2.66547     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     20   3.11636  3.83684  0.09317  3.76856     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     21   2.89306  3.09339  0.14401  3.40010     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     22   3.11636  3.83684  0.09317  3.76856     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     23   0.27775  3.11797  1.90629  3.00308     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     24   2.43721  0.67127  2.57917  1.12177     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     25   2.83665  1.95088  2.97818  0.28989     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     26   0.11265  3.63223  2.96414  3.55860     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     27   3.72015  0.10061  3.75665  3.03400     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     28   3.72015  0.10061  3.75665  3.03400     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     29   3.72015  0.10061  3.75665  3.03400     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     30   3.11636  3.83684  0.09317  3.76856     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     31   3.72015  0.10061  3.75665  3.03400     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     32   3.24554  2.47422  3.28838  0.17494     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     33   3.11636  3.83684  0.09317  3.76856     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     34   0.11265  3.63223  2.96414  3.55860     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     35   2.13801  3.33567  0.21466  3.22624     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     36   3.35066  2.76152  3.38856  0.14158     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     37   3.35066  2.76152  3.38856  0.14158     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     38   3.35066  2.76152  3.38856  0.14158     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     39   0.11265  3.63223  2.96414  3.55860     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     40   0.11265  3.63223  2.96414  3.55860     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     41   3.11636  3.83684  0.09317  3.76856     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     42   3.72015  0.10061  3.75665  3.03400     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     43   0.11265  3.63223  2.96414  3.55860     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     44   3.35066  2.76152  3.38856  0.14158     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
     45   0.12194  3.59444  2.85299  3.51819     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01592  4.14841        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_fifteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:16:00 2012
NSEQ  92
EFFN  3.287720
CKSUM 1199922528
STATS LOCAL MSV       -8.2231  0.71932
STATS LOCAL VITERBI   -7.6942  0.71932
STATS LOCAL FORWARD   -3.9730  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33730  1.39990  1.25149  1.58599
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  0.00000        *
      1   0.14339  3.36900  2.79461  3.26960      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
      2   2.99535  2.39116  3.04673  0.20956      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
      3   2.93966  3.57632  0.11842  3.47981      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
      4   0.14339  3.36900  2.79461  3.26960      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
      5   2.93966  3.57632  0.11842  3.47981      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
      6   0.14339  3.36900  2.79461  3.26960      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
      7   3.42013  0.13177  3.47014  2.81954      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
      8   3.42013  0.13177  3.47014  2.81954      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
      9   3.07726  2.58792  3.12585  0.18052      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     10   3.42013  0.13177  3.47014  2.81954     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     11   0.14339  3.36900  2.79461  3.26960     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     12   2.79119  3.50709  0.13291  3.40756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     13   2.93966  3.57632  0.11842  3.47981     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     14   3.07726  2.58792  3.12585  0.18052     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     15   3.42013  0.13177  3.47014  2.81954     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     16   0.14339  3.36900  2.79461  3.26960     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     17   2.93966  3.57632  0.11842  3.47981     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     18   2.72590  3.47419  0.14014  3.37283     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     19   3.42013  0.13177  3.47014  2.81954     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     20   2.93966  3.57632  0.11842  3.47981     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     21   2.93966  3.57632  0.11842  3.47981     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     22   2.93966  3.57632  0.11842  3.47981     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     23   2.50408  3.35218  0.16935  3.24339     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     24   3.07462  0.17317  3.25355  2.60153     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     25   3.07726  2.58792  3.12585  0.18052     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     26   0.14339  3.36900  2.79461  3.26960     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     27   3.42013  0.13177  3.47014  2.81954     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     28   3.42013  0.13177  3.47014  2.81954     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     29   3.42013  0.13177  3.47014  2.81954     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     30   2.93966  3.57632  0.11842  3.47981     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     31   3.42013  0.13177  3.47014  2.81954     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     32   3.07726  2.58792  3.12585  0.18052     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     33   2.93966  3.57632  0.11842  3.47981     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     34   0.14339  3.36900  2.79461  3.26960     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     35   0.24643  3.04265  2.14536  2.92474     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     36   3.07726  2.58792  3.12585  0.18052     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     37   3.07726  2.58792  3.12585  0.18052     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     38   3.07726  2.58792  3.12585  0.18052     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     39   0.14339  3.36900  2.79461  3.26960     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     40   0.14339  3.36900  2.79461  3.26960     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     41   2.93966  3.57632  0.11842  3.47981     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     42   3.42013  0.13177  3.47014  2.81954     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     43   0.14339  3.36900  2.79461  3.26960     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     44   3.07726  2.58792  3.12585  0.18052     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
     45   0.14339  3.36900  2.79461  3.26960     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01874  3.98671        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_five_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:11:27 2012
NSEQ  157
EFFN  4.201935
CKSUM 3581575669
STATS LOCAL MSV       -6.8273  0.71932
STATS LOCAL VITERBI   -7.7042  0.71932
STATS LOCAL FORWARD   -3.8808  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.46106  1.23380  1.22309  1.70095
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  0.00000        *
      1   1.32983  0.93942  2.06623  1.52344      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
      2   1.85908  0.77789  2.05547  1.35954      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
      3   3.06034  3.71507  0.10895  3.44195      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
      4   2.46516  0.30189  2.72397  2.20751      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
      5   3.11149  3.82961  0.09379  3.76052      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
      6   0.11342  3.62471  2.95930  3.55034      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
      7   3.71171  0.10136  3.74861  3.02806      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
      8   3.71171  0.10136  3.74861  3.02806      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
      9   3.32228  0.18765  3.37511  2.29447      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     10   3.71171  0.10136  3.74861  3.02806     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     11   0.11342  3.62471  2.95930  3.55034     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     12   3.11149  3.82961  0.09379  3.76052     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     13   3.11149  3.82961  0.09379  3.76052     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     14   3.25469  2.51402  3.29698  0.17023     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     15   3.71171  0.10136  3.74861  3.02806     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     16   0.11342  3.62471  2.95930  3.55034     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     17   2.75306  3.68610  0.12329  3.60497     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     18   2.89640  3.54949  0.13581  3.14576     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     19   3.54044  0.13509  3.58471  2.66477     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     20   3.11149  3.82961  0.09379  3.76052     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     21   2.97710  3.12600  0.13567  3.44093     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     22   3.11149  3.82961  0.09379  3.76052     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     23   0.60645  2.70802  1.16635  2.56984     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     24   2.55747  0.37986  2.78908  1.73123     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     25   3.11326  2.18476  3.16216  0.22226     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     26   0.11342  3.62471  2.95930  3.55034     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     27   3.71171  0.10136  3.74861  3.02806     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     28   3.71171  0.10136  3.74861  3.02806     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     29   3.71171  0.10136  3.74861  3.02806     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     30   3.11149  3.82961  0.09379  3.76052     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     31   3.44260  0.13868  3.16422  2.89555     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     32   3.11580  2.67240  2.84404  0.18828     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     33   3.11149  3.82961  0.09379  3.76052     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     34   0.11342  3.62471  2.95930  3.55034     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     35   2.41235  3.50416  0.16583  3.40734     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     36   3.34261  2.75638  3.38083  0.14258     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     37   3.34261  2.75638  3.38083  0.14258     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     38   3.34261  2.75638  3.38083  0.14258     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     39   0.11342  3.62471  2.95930  3.55034     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     40   0.11342  3.62471  2.95930  3.55034     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     41   3.11149  3.82961  0.09379  3.76052     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     42   3.71171  0.10136  3.74861  3.02806     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     43   0.11342  3.62471  2.95930  3.55034     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     44   3.34261  2.75638  3.38083  0.14258     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
     45   0.11342  3.62471  2.95930  3.55034     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01600  4.14344        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_four_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:11:19 2012
NSEQ  19
EFFN  3.363037
CKSUM 3416317619
STATS LOCAL MSV       -8.2126  0.71933
STATS LOCAL VITERBI   -7.7490  0.71933
STATS LOCAL FORWARD   -3.7875  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39475  1.27161  1.18437  1.79704
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  0.00000        *
      1   0.14021  3.39310  2.81025  3.29598      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
      2   3.10158  2.60339  3.14924  0.17660      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
      3   2.95646  3.60076  0.11575  3.50679      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
      4   3.44789  0.12846  3.49672  2.83975      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
      5   2.95646  3.60076  0.11575  3.50679      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
      6   0.14021  3.39310  2.81025  3.29598      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
      7   3.44789  0.12846  3.49672  2.83975      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
      8   3.44789  0.12846  3.49672  2.83975      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
      9   3.44789  0.12846  3.49672  2.83975      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     10   3.44789  0.12846  3.49672  2.83975     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     11   0.14021  3.39310  2.81025  3.29598     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     12   2.95646  3.60076  0.11575  3.50679     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     13   2.95646  3.60076  0.11575  3.50679     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     14   0.14021  3.39310  2.81025  3.29598     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     15   2.83330  2.01058  2.89091  0.28536     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     16   2.95646  3.60076  0.11575  3.50679     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     17   2.95646  3.60076  0.11575  3.50679     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     18   2.95646  3.60076  0.11575  3.50679     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     19   3.44789  0.12846  3.49672  2.83975     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     20   2.95646  3.60076  0.11575  3.50679     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     21   0.14021  3.39310  2.81025  3.29598     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     22   2.95646  3.60076  0.11575  3.50679     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     23   2.95646  3.60076  0.11575  3.50679     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     24   2.36268  0.48681  2.04280  1.82275     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     25   3.44789  0.12846  3.49672  2.83975     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     26   0.14021  3.39310  2.81025  3.29598     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     27   3.44789  0.12846  3.49672  2.83975     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     28   3.44789  0.12846  3.49672  2.83975     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     29   3.44789  0.12846  3.49672  2.83975     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     30   2.95646  3.60076  0.11575  3.50679     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     31   3.44789  0.12846  3.49672  2.83975     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     32   2.44542  1.16167  2.51596  0.65477     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     33   2.95646  3.60076  0.11575  3.50679     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     34   0.14021  3.39310  2.81025  3.29598     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     35   2.95646  3.60076  0.11575  3.50679     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     36   3.10158  2.60339  3.14924  0.17660     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     37   3.10158  2.60339  3.14924  0.17660     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     38   3.10158  2.60339  3.14924  0.17660     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     39   0.14021  3.39310  2.81025  3.29598     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     40   0.14021  3.39310  2.81025  3.29598     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     41   2.95646  3.60076  0.11575  3.50679     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     42   3.44789  0.12846  3.49672  2.83975     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     43   0.14021  3.39310  2.81025  3.29598     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     44   3.10158  2.60339  3.14924  0.17660     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
     45   0.14021  3.39310  2.81025  3.29598     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01847  4.00059        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_fourteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:15:51 2012
NSEQ  140
EFFN  4.627075
CKSUM 3011099649
STATS LOCAL MSV       -6.6527  0.71932
STATS LOCAL VITERBI   -7.6496  0.71932
STATS LOCAL FORWARD   -3.9115  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.43118  1.23274  1.27380  1.66224
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  0.00000        *
      1   1.37717  1.60803  2.10525  0.85423      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
      2   2.72518  0.45872  2.70806  1.44517      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
      3   2.39521  1.56755  0.49190  2.42108      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
      4   3.18104  0.14395  3.52007  2.76579      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
      5   3.17322  3.92093  0.08634  3.86202      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
      6   0.10403  3.72055  3.02131  3.65575      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
      7   3.73295  0.10823  3.76892  2.88994      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
      8   3.70997  0.11268  3.74707  2.83880      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
      9   3.46625  0.16606  3.51430  2.38592      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     10   3.72711  0.10935  3.76336  2.87672     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     11   0.10403  3.72055  3.02131  3.65575     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     12   1.53211  2.99966  0.38944  2.87027     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     13   3.17322  3.92093  0.08634  3.86202     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     14   3.44646  2.82292  3.48058  0.13020     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     15   3.81848  0.09227  3.85031  3.10311     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     16   0.10403  3.72055  3.02131  3.65575     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     17   3.17322  3.92093  0.08634  3.86202     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     18   2.96577  3.85342  0.10022  3.78836     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     19   2.81556  0.45604  2.88277  1.38486     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     20   3.17322  3.92093  0.08634  3.86202     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     21   3.17322  3.92093  0.08634  3.86202     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     22   3.17322  3.92093  0.08634  3.86202     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     23   0.29522  3.14036  1.80891  3.02547     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     24   2.36283  0.62456  2.36537  1.28577     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     25   3.33089  2.48707  3.37093  0.16638     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     26   0.10403  3.72055  3.02131  3.65575     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     27   3.75492  0.10405  3.78981  2.94093     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     28   3.81848  0.09227  3.85031  3.10311     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     29   3.81848  0.09227  3.85031  3.10311     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     30   3.17322  3.92093  0.08634  3.86202     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     31   3.81848  0.09227  3.85031  3.10311     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     32   3.44646  2.82292  3.48058  0.13020     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     33   3.17322  3.92093  0.08634  3.86202     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     34   0.10403  3.72055  3.02131  3.65575     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     35   2.00667  3.32757  0.23624  3.21665     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     36   2.82308  1.45609  2.88511  0.42835     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     37   3.44646  2.82292  3.48058  0.13020     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     38   3.44646  2.82292  3.48058  0.13020     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     39   0.10403  3.72055  3.02131  3.65575     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     40   0.10403  3.72055  3.02131  3.65575     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     41   3.17322  3.92093  0.08634  3.86202     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     42   3.81848  0.09227  3.85031  3.10311     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     43   0.10403  3.72055  3.02131  3.65575     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     44   3.44646  2.82292  3.48058  0.13020     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
     45   0.10403  3.72055  3.02131  3.65575     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01498  4.20873        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_ninea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:12:04 2012
NSEQ  2
EFFN  2.000000
CKSUM 3826483507
STATS LOCAL MSV       -7.6397  0.72761
STATS LOCAL VITERBI   -8.2800  0.72761
STATS LOCAL FORWARD   -3.2833  0.72761
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34637  1.24605  1.37655  1.61078
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   0.23862  2.84929  2.43386  2.70756      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_nineb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:12:11 2012
NSEQ  18
EFFN  3.133301
CKSUM 1046412576
STATS LOCAL MSV       -8.2028  0.71931
STATS LOCAL VITERBI   -7.6692  0.71931
STATS LOCAL FORWARD   -4.0356  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47236  1.33687  1.14083  1.66921
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  0.00000        *
      1   0.15045  3.31767  2.76107  3.21348      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
      2   3.36085  0.13917  3.41331  2.77609      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
      3   2.90335  3.52386  0.12440  3.42200      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
      4   2.90335  3.52386  0.12440  3.42200      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
      5   2.90335  3.52386  0.12440  3.42200      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
      6   0.15045  3.31767  2.76107  3.21348      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
      7   3.36085  0.13917  3.41331  2.77609      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
      8   3.36085  0.13917  3.41331  2.77609      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
      9   3.02586  2.55514  3.07640  0.18913      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     10   3.36085  0.13917  3.41331  2.77609     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     11   0.15045  3.31767  2.76107  3.21348     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     12   2.90335  3.52386  0.12440  3.42200     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     13   2.90335  3.52386  0.12440  3.42200     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     14   3.02586  2.55514  3.07640  0.18913     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     15   3.36085  0.13917  3.41331  2.77609     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     16   0.15045  3.31767  2.76107  3.21348     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     17   2.90335  3.52386  0.12440  3.42200     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     18   2.90335  3.52386  0.12440  3.42200     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     19   3.36085  0.13917  3.41331  2.77609     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     20   2.90335  3.52386  0.12440  3.42200     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     21   2.90335  3.52386  0.12440  3.42200     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     22   2.90335  3.52386  0.12440  3.42200     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     23   2.90335  3.52386  0.12440  3.42200     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     24   3.36085  0.13917  3.41331  2.77609     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     25   3.02586  2.55514  3.07640  0.18913     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     26   0.15045  3.31767  2.76107  3.21348     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     27   3.36085  0.13917  3.41331  2.77609     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     28   3.36085  0.13917  3.41331  2.77609     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     29   3.36085  0.13917  3.41331  2.77609     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     30   2.90335  3.52386  0.12440  3.42200     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     31   3.36085  0.13917  3.41331  2.77609     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     32   3.02586  2.55514  3.07640  0.18913     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     33   2.90335  3.52386  0.12440  3.42200     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     34   0.15045  3.31767  2.76107  3.21348     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     35   2.90335  3.52386  0.12440  3.42200     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     36   3.02586  2.55514  3.07640  0.18913     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     37   3.02586  2.55514  3.07640  0.18913     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     38   3.02586  2.55514  3.07640  0.18913     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     39   0.15045  3.31767  2.76107  3.21348     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     40   0.15045  3.31767  2.76107  3.21348     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     41   2.90335  3.52386  0.12440  3.42200     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     42   3.36085  0.13917  3.41331  2.77609     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     43   0.15045  3.31767  2.76107  3.21348     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     44   3.02586  2.55514  3.07640  0.18913     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
     45   0.15045  3.31767  2.76107  3.21348     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01929  3.95763        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_ninec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:12:17 2012
NSEQ  28
EFFN  3.195801
CKSUM 3247683125
STATS LOCAL MSV       -8.1990  0.71931
STATS LOCAL VITERBI   -7.6999  0.71931
STATS LOCAL FORWARD   -3.8686  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.48734  1.27164  1.19063  1.66271
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  0.00000        *
      1   0.31838  2.86951  1.88725  2.74175      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
      2   3.04692  2.56858  3.09666  0.18555      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
      3   2.91836  3.54548  0.12189  3.44581      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
      4   3.38523  0.13607  3.43670  2.79401      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
      5   2.91836  3.54548  0.12189  3.44581      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
      6   0.14750  3.33877  2.77489  3.23653      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
      7   3.38523  0.13607  3.43670  2.79401      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
      8   3.38523  0.13607  3.43670  2.79401      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
      9   3.38523  0.13607  3.43670  2.79401      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     10   3.38523  0.13607  3.43670  2.79401     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     11   0.14750  3.33877  2.77489  3.23653     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     12   2.91836  3.54548  0.12189  3.44581     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     13   2.91836  3.54548  0.12189  3.44581     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     14   3.04692  2.56858  3.09666  0.18555     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     15   3.38523  0.13607  3.43670  2.79401     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     16   0.14750  3.33877  2.77489  3.23653     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     17   2.91836  3.54548  0.12189  3.44581     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     18   2.91836  3.54548  0.12189  3.44581     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     19   3.38523  0.13607  3.43670  2.79401     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     20   2.91836  3.54548  0.12189  3.44581     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     21   2.91836  3.54548  0.12189  3.44581     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     22   2.91836  3.54548  0.12189  3.44581     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     23   2.91836  3.54548  0.12189  3.44581     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     24   3.38523  0.13607  3.43670  2.79401     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     25   3.04692  2.56858  3.09666  0.18555     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     26   0.14750  3.33877  2.77489  3.23653     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     27   3.38523  0.13607  3.43670  2.79401     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     28   3.38523  0.13607  3.43670  2.79401     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     29   3.38523  0.13607  3.43670  2.79401     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     30   2.91836  3.54548  0.12189  3.44581     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     31   3.38523  0.13607  3.43670  2.79401     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     32   3.04692  2.56858  3.09666  0.18555     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     33   2.91836  3.54548  0.12189  3.44581     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     34   0.14750  3.33877  2.77489  3.23653     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     35   2.91836  3.54548  0.12189  3.44581     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     36   3.04692  2.56858  3.09666  0.18555     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     37   3.04692  2.56858  3.09666  0.18555     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     38   3.04692  2.56858  3.09666  0.18555     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     39   0.14750  3.33877  2.77489  3.23653     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     40   0.14750  3.33877  2.77489  3.23653     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     41   2.91836  3.54548  0.12189  3.44581     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     42   3.38523  0.13607  3.43670  2.79401     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     43   0.14750  3.33877  2.77489  3.23653     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     44   3.04692  2.56858  3.09666  0.18555     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     45   0.14750  3.33877  2.77489  3.23653     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01906  3.96950        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_nined_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:12:22 2012
NSEQ  2
EFFN  2.000000
CKSUM 1933484248
STATS LOCAL MSV       -7.3520  0.72782
STATS LOCAL VITERBI   -8.2066  0.72782
STATS LOCAL FORWARD   -3.1788  0.72782
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.29226  1.29514  1.43530  1.54437
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   0.23862  2.84929  2.43386  2.70756      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_ninee_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:12:27 2012
NSEQ  4
EFFN  3.152344
CKSUM 2253024799
STATS LOCAL MSV       -8.1865  0.71933
STATS LOCAL VITERBI   -7.7862  0.71933
STATS LOCAL FORWARD   -3.8179  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33648  1.33706  1.25226  1.66730
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  0.00000        *
      1   0.14954  3.32415  2.76532  3.22056      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      2   0.14954  3.32415  2.76532  3.22056      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      3   2.90797  3.53050  0.12362  3.42932      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      4   3.03232  2.55926  3.08260  0.18802      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      5   2.90797  3.53050  0.12362  3.42932      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      6   0.14954  3.32415  2.76532  3.22056      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      7   3.36834  0.13821  3.42049  2.78160      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      8   3.36834  0.13821  3.42049  2.78160      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      9   3.36834  0.13821  3.42049  2.78160      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     10   3.36834  0.13821  3.42049  2.78160     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     11   0.14954  3.32415  2.76532  3.22056     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     12   2.90797  3.53050  0.12362  3.42932     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     13   2.90797  3.53050  0.12362  3.42932     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     14   3.03232  2.55926  3.08260  0.18802     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     15   3.36834  0.13821  3.42049  2.78160     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     16   0.14954  3.32415  2.76532  3.22056     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     17   2.90797  3.53050  0.12362  3.42932     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     18   2.90797  3.53050  0.12362  3.42932     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     19   3.36834  0.13821  3.42049  2.78160     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     20   2.90797  3.53050  0.12362  3.42932     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     21   2.90797  3.53050  0.12362  3.42932     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     22   2.90797  3.53050  0.12362  3.42932     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     23   0.14954  3.32415  2.76532  3.22056     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     24   3.36834  0.13821  3.42049  2.78160     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     25   3.03232  2.55926  3.08260  0.18802     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     26   0.14954  3.32415  2.76532  3.22056     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     27   3.36834  0.13821  3.42049  2.78160     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     28   3.36834  0.13821  3.42049  2.78160     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     29   3.36834  0.13821  3.42049  2.78160     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     30   2.90797  3.53050  0.12362  3.42932     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     31   3.36834  0.13821  3.42049  2.78160     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     32   3.03232  2.55926  3.08260  0.18802     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     33   2.90797  3.53050  0.12362  3.42932     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     34   0.14954  3.32415  2.76532  3.22056     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     35   2.90797  3.53050  0.12362  3.42932     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     36   3.03232  2.55926  3.08260  0.18802     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     37   3.03232  2.55926  3.08260  0.18802     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     38   3.03232  2.55926  3.08260  0.18802     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     39   0.14954  3.32415  2.76532  3.22056     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     40   0.14954  3.32415  2.76532  3.22056     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     41   2.90797  3.53050  0.12362  3.42932     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     42   3.36834  0.13821  3.42049  2.78160     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     43   0.14954  3.32415  2.76532  3.22056     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     44   3.03232  2.55926  3.08260  0.18802     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     45   0.14954  3.32415  2.76532  3.22056     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01922  3.96126        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_ninef_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:12:35 2012
NSEQ  11
EFFN  3.182373
CKSUM 2259734906
STATS LOCAL MSV       -8.2662  0.71933
STATS LOCAL VITERBI   -7.7504  0.71933
STATS LOCAL FORWARD   -3.8026  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.41753  1.21361  1.24880  1.75034
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  0.00000        *
      1   0.14812  3.33427  2.77195  3.23162      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
      2   3.38004  0.13672  3.43172  2.79020      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
      3   2.91517  3.54088  0.12242  3.44074      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
      4   3.38004  0.13672  3.43172  2.79020      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
      5   2.91517  3.54088  0.12242  3.44074      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
      6   0.14812  3.33427  2.77195  3.23162      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
      7   3.38004  0.13672  3.43172  2.79020      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
      8   3.38004  0.13672  3.43172  2.79020      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
      9   3.38004  0.13672  3.43172  2.79020      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     10   3.38004  0.13672  3.43172  2.79020     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     11   0.14812  3.33427  2.77195  3.23162     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     12   2.91517  3.54088  0.12242  3.44074     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     13   2.91517  3.54088  0.12242  3.44074     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     14   3.04242  2.56572  3.09233  0.18630     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     15   3.38004  0.13672  3.43172  2.79020     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     16   0.14812  3.33427  2.77195  3.23162     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     17   0.32282  2.85901  1.87473  2.73070     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     18   2.91517  3.54088  0.12242  3.44074     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     19   3.38004  0.13672  3.43172  2.79020     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     20   2.91517  3.54088  0.12242  3.44074     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     21   2.91517  3.54088  0.12242  3.44074     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     22   2.91517  3.54088  0.12242  3.44074     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     23   2.91517  3.54088  0.12242  3.44074     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     24   3.38004  0.13672  3.43172  2.79020     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     25   3.04242  2.56572  3.09233  0.18630     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     26   0.14812  3.33427  2.77195  3.23162     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     27   3.38004  0.13672  3.43172  2.79020     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     28   3.38004  0.13672  3.43172  2.79020     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     29   3.38004  0.13672  3.43172  2.79020     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     30   2.91517  3.54088  0.12242  3.44074     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     31   3.38004  0.13672  3.43172  2.79020     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     32   3.04242  2.56572  3.09233  0.18630     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     33   2.91517  3.54088  0.12242  3.44074     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     34   0.14812  3.33427  2.77195  3.23162     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     35   2.91517  3.54088  0.12242  3.44074     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     36   3.04242  2.56572  3.09233  0.18630     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     37   3.04242  2.56572  3.09233  0.18630     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     38   3.04242  2.56572  3.09233  0.18630     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     39   0.14812  3.33427  2.77195  3.23162     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     40   0.14812  3.33427  2.77195  3.23162     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     41   2.91517  3.54088  0.12242  3.44074     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     42   3.38004  0.13672  3.43172  2.79020     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     43   0.14812  3.33427  2.77195  3.23162     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     44   3.04242  2.56572  3.09233  0.18630     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
     45   0.14812  3.33427  2.77195  3.23162     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01911  3.96696        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_nineg_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:12:40 2012
NSEQ  3
EFFN  3.000000
CKSUM 3180213690
STATS LOCAL MSV       -7.9951  0.71983
STATS LOCAL VITERBI   -7.7998  0.71983
STATS LOCAL FORWARD   -3.7258  0.71983
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33644  1.34183  1.19530  1.75307
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   0.15719  3.27118  2.73043  3.16274     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_nineh_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:12:45 2012
NSEQ  5
EFFN  3.168945
CKSUM 177826028
STATS LOCAL MSV       -8.0764  0.71931
STATS LOCAL VITERBI   -7.7650  0.71931
STATS LOCAL FORWARD   -3.8765  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47768  1.27000  1.25567  1.57931
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  0.00000        *
      1   3.03791  2.56284  3.08799  0.18707      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      2   3.03791  2.56284  3.08799  0.18707      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      3   2.91196  3.53626  0.12295  3.43565      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      4   3.37482  0.13738  3.42671  2.78637      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      5   2.91196  3.53626  0.12295  3.43565      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      6   0.14875  3.32976  2.76899  3.22669      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      7   3.37482  0.13738  3.42671  2.78637      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      8   3.37482  0.13738  3.42671  2.78637      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      9   3.37482  0.13738  3.42671  2.78637      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     10   3.37482  0.13738  3.42671  2.78637     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     11   0.14875  3.32976  2.76899  3.22669     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     12   2.91196  3.53626  0.12295  3.43565     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     13   2.91196  3.53626  0.12295  3.43565     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     14   3.03791  2.56284  3.08799  0.18707     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     15   3.37482  0.13738  3.42671  2.78637     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     16   0.14875  3.32976  2.76899  3.22669     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     17   2.91196  3.53626  0.12295  3.43565     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     18   2.91196  3.53626  0.12295  3.43565     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     19   3.37482  0.13738  3.42671  2.78637     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     20   2.91196  3.53626  0.12295  3.43565     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     21   2.91196  3.53626  0.12295  3.43565     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     22   2.91196  3.53626  0.12295  3.43565     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     23   0.14875  3.32976  2.76899  3.22669     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     24   3.03791  2.56284  3.08799  0.18707     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     25   3.37482  0.13738  3.42671  2.78637     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     26   0.14875  3.32976  2.76899  3.22669     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     27   3.37482  0.13738  3.42671  2.78637     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     28   3.37482  0.13738  3.42671  2.78637     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     29   3.37482  0.13738  3.42671  2.78637     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     30   2.91196  3.53626  0.12295  3.43565     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     31   3.37482  0.13738  3.42671  2.78637     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     32   3.03791  2.56284  3.08799  0.18707     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     33   2.91196  3.53626  0.12295  3.43565     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     34   0.14875  3.32976  2.76899  3.22669     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     35   2.91196  3.53626  0.12295  3.43565     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     36   3.03791  2.56284  3.08799  0.18707     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     37   3.03791  2.56284  3.08799  0.18707     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     38   3.03791  2.56284  3.08799  0.18707     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     39   0.14875  3.32976  2.76899  3.22669     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     40   0.14875  3.32976  2.76899  3.22669     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     41   2.91196  3.53626  0.12295  3.43565     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     42   3.37482  0.13738  3.42671  2.78637     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     43   0.14875  3.32976  2.76899  3.22669     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     44   3.03791  2.56284  3.08799  0.18707     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     45   0.14875  3.32976  2.76899  3.22669     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01916  3.96442        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_ninei_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:12:50 2012
NSEQ  7
EFFN  3.120605
CKSUM 2734349611
STATS LOCAL MSV       -8.1916  0.71933
STATS LOCAL VITERBI   -7.7361  0.71933
STATS LOCAL FORWARD   -3.7364  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47980  1.15880  1.25782  1.74766
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  0.00000        *
      1   3.35584  0.13982  3.40850  2.77239      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
      2   3.35584  0.13982  3.40850  2.77239      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
      3   2.90025  3.51940  0.12492  3.41710      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
      4   3.02155  2.55238  3.07224  0.18988      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
      5   2.90025  3.51940  0.12492  3.41710      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
      6   0.15106  3.31333  2.75822  3.20874      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
      7   3.35584  0.13982  3.40850  2.77239      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
      8   3.35584  0.13982  3.40850  2.77239      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
      9   3.35584  0.13982  3.40850  2.77239      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     10   3.35584  0.13982  3.40850  2.77239     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     11   0.15106  3.31333  2.75822  3.20874     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     12   2.90025  3.51940  0.12492  3.41710     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     13   2.90025  3.51940  0.12492  3.41710     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     14   3.02155  2.55238  3.07224  0.18988     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     15   3.35584  0.13982  3.40850  2.77239     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     16   0.15106  3.31333  2.75822  3.20874     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     17   2.90025  3.51940  0.12492  3.41710     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     18   2.90025  3.51940  0.12492  3.41710     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     19   3.35584  0.13982  3.40850  2.77239     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     20   2.90025  3.51940  0.12492  3.41710     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     21   2.90025  3.51940  0.12492  3.41710     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     22   2.90025  3.51940  0.12492  3.41710     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     23   0.15106  3.31333  2.75822  3.20874     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     24   3.35584  0.13982  3.40850  2.77239     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     25   3.35584  0.13982  3.40850  2.77239     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     26   0.15106  3.31333  2.75822  3.20874     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     27   3.35584  0.13982  3.40850  2.77239     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     28   3.35584  0.13982  3.40850  2.77239     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     29   3.35584  0.13982  3.40850  2.77239     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     30   2.90025  3.51940  0.12492  3.41710     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     31   3.35584  0.13982  3.40850  2.77239     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     32   3.02155  2.55238  3.07224  0.18988     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     33   2.90025  3.51940  0.12492  3.41710     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     34   0.15106  3.31333  2.75822  3.20874     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     35   2.90025  3.51940  0.12492  3.41710     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     36   3.02155  2.55238  3.07224  0.18988     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     37   3.02155  2.55238  3.07224  0.18988     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     38   3.02155  2.55238  3.07224  0.18988     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     39   0.15106  3.31333  2.75822  3.20874     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     40   0.15106  3.31333  2.75822  3.20874     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     41   2.90025  3.51940  0.12492  3.41710     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     42   3.35584  0.13982  3.40850  2.77239     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     43   0.15106  3.31333  2.75822  3.20874     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     44   3.02155  2.55238  3.07224  0.18988     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
     45   0.15106  3.31333  2.75822  3.20874     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01934  3.95520        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_ninej_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:12:54 2012
NSEQ  4
EFFN  3.136719
CKSUM 1347985792
STATS LOCAL MSV       -8.1185  0.71931
STATS LOCAL VITERBI   -7.6324  0.71931
STATS LOCAL FORWARD   -3.7644  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.41001  1.15750  1.31861  1.74823
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  0.00000        *
      1   3.36220  0.13900  3.41461  2.77708      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
      2   3.36220  0.13900  3.41461  2.77708      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
      3   2.90418  3.52506  0.12426  3.42332      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
      4   3.36220  0.13900  3.41461  2.77708      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
      5   2.90418  3.52506  0.12426  3.42332      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
      6   0.15028  3.31884  2.76184  3.21476      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
      7   3.36220  0.13900  3.41461  2.77708      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
      8   3.36220  0.13900  3.41461  2.77708      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
      9   3.36220  0.13900  3.41461  2.77708      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     10   3.36220  0.13900  3.41461  2.77708     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     11   0.15028  3.31884  2.76184  3.21476     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     12   2.90418  3.52506  0.12426  3.42332     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     13   2.90418  3.52506  0.12426  3.42332     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     14   3.02702  2.55588  3.07751  0.18893     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     15   3.36220  0.13900  3.41461  2.77708     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     16   0.15028  3.31884  2.76184  3.21476     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     17   2.90418  3.52506  0.12426  3.42332     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     18   0.15028  3.31884  2.76184  3.21476     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     19   3.36220  0.13900  3.41461  2.77708     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     20   2.90418  3.52506  0.12426  3.42332     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     21   2.90418  3.52506  0.12426  3.42332     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     22   2.90418  3.52506  0.12426  3.42332     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     23   0.15028  3.31884  2.76184  3.21476     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     24   3.36220  0.13900  3.41461  2.77708     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     25   3.02702  2.55588  3.07751  0.18893     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     26   0.15028  3.31884  2.76184  3.21476     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     27   3.36220  0.13900  3.41461  2.77708     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     28   3.36220  0.13900  3.41461  2.77708     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     29   3.36220  0.13900  3.41461  2.77708     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     30   2.90418  3.52506  0.12426  3.42332     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     31   3.36220  0.13900  3.41461  2.77708     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     32   3.02702  2.55588  3.07751  0.18893     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     33   2.90418  3.52506  0.12426  3.42332     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     34   0.15028  3.31884  2.76184  3.21476     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     35   2.90418  3.52506  0.12426  3.42332     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     36   3.02702  2.55588  3.07751  0.18893     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     37   3.02702  2.55588  3.07751  0.18893     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     38   3.02702  2.55588  3.07751  0.18893     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     39   0.15028  3.31884  2.76184  3.21476     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     40   0.15028  3.31884  2.76184  3.21476     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     41   2.90418  3.52506  0.12426  3.42332     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     42   3.36220  0.13900  3.41461  2.77708     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     43   0.15028  3.31884  2.76184  3.21476     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     44   3.02702  2.55588  3.07751  0.18893     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
     45   0.15028  3.31884  2.76184  3.21476     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01928  3.95828        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_ninek_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:13:05 2012
NSEQ  9
EFFN  3.265137
CKSUM 2766384668
STATS LOCAL MSV       -8.1227  0.71931
STATS LOCAL VITERBI   -7.6635  0.71931
STATS LOCAL FORWARD   -3.7620  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.50333  1.26598  1.24180  1.57607
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  0.00000        *
      1   3.06987  2.58322  3.11874  0.18173      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
      2   3.06987  2.58322  3.11874  0.18173      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
      3   2.93451  3.56885  0.11925  3.47156      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
      4   3.41166  0.13280  3.46202  2.81336      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
      5   2.93451  3.56885  0.11925  3.47156      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
      6   0.14438  3.36166  2.78983  3.26157      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
      7   3.41166  0.13280  3.46202  2.81336      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
      8   3.41166  0.13280  3.46202  2.81336      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
      9   3.41166  0.13280  3.46202  2.81336      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     10   3.41166  0.13280  3.46202  2.81336     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     11   0.14438  3.36166  2.78983  3.26157     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     12   2.93451  3.56885  0.11925  3.47156     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     13   2.93451  3.56885  0.11925  3.47156     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     14   3.06987  2.58322  3.11874  0.18173     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     15   3.41166  0.13280  3.46202  2.81336     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     16   0.14438  3.36166  2.78983  3.26157     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     17   2.93451  3.56885  0.11925  3.47156     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     18   2.93451  3.56885  0.11925  3.47156     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     19   3.41166  0.13280  3.46202  2.81336     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     20   0.52310  2.61815  1.38438  2.47807     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     21   2.93451  3.56885  0.11925  3.47156     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     22   2.93451  3.56885  0.11925  3.47156     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     23   2.93451  3.56885  0.11925  3.47156     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     24   3.41166  0.13280  3.46202  2.81336     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     25   3.06987  2.58322  3.11874  0.18173     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     26   0.14438  3.36166  2.78983  3.26157     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     27   3.41166  0.13280  3.46202  2.81336     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     28   3.41166  0.13280  3.46202  2.81336     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     29   3.41166  0.13280  3.46202  2.81336     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     30   2.93451  3.56885  0.11925  3.47156     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     31   3.41166  0.13280  3.46202  2.81336     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     32   3.06987  2.58322  3.11874  0.18173     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     33   2.93451  3.56885  0.11925  3.47156     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     34   0.14438  3.36166  2.78983  3.26157     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     35   2.93451  3.56885  0.11925  3.47156     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     36   3.06987  2.58322  3.11874  0.18173     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     37   3.06987  2.58322  3.11874  0.18173     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     38   3.06987  2.58322  3.11874  0.18173     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     39   0.14438  3.36166  2.78983  3.26157     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     40   0.14438  3.36166  2.78983  3.26157     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     41   2.93451  3.56885  0.11925  3.47156     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     42   3.41166  0.13280  3.46202  2.81336     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     43   0.14438  3.36166  2.78983  3.26157     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     44   3.06987  2.58322  3.11874  0.18173     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
     45   0.14438  3.36166  2.78983  3.26157     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01881  3.98251        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_ninel_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:13:10 2012
NSEQ  6
EFFN  3.131836
CKSUM 1499209124
STATS LOCAL MSV       -8.0603  0.71933
STATS LOCAL VITERBI   -7.7477  0.71933
STATS LOCAL FORWARD   -3.6468  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40997  1.15883  1.31859  1.74593
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  0.00000        *
      1   3.36028  0.13924  3.41276  2.77566      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
      2   3.02537  2.55482  3.07592  0.18922      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
      3   2.90299  3.52335  0.12446  3.42144      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
      4   3.36028  0.13924  3.41276  2.77566      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
      5   2.90299  3.52335  0.12446  3.42144      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
      6   0.15052  3.31717  2.76074  3.21294      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
      7   3.36028  0.13924  3.41276  2.77566      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
      8   3.36028  0.13924  3.41276  2.77566      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
      9   3.36028  0.13924  3.41276  2.77566      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     10   3.36028  0.13924  3.41276  2.77566     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     11   0.15052  3.31717  2.76074  3.21294     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     12   2.90299  3.52335  0.12446  3.42144     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     13   2.90299  3.52335  0.12446  3.42144     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     14   3.02537  2.55482  3.07592  0.18922     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     15   3.36028  0.13924  3.41276  2.77566     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     16   0.15052  3.31717  2.76074  3.21294     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     17   2.90299  3.52335  0.12446  3.42144     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     18   2.90299  3.52335  0.12446  3.42144     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     19   3.36028  0.13924  3.41276  2.77566     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     20   2.90299  3.52335  0.12446  3.42144     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     21   2.90299  3.52335  0.12446  3.42144     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     22   2.90299  3.52335  0.12446  3.42144     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     23   0.15052  3.31717  2.76074  3.21294     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     24   3.36028  0.13924  3.41276  2.77566     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     25   3.36028  0.13924  3.41276  2.77566     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     26   0.15052  3.31717  2.76074  3.21294     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     27   3.36028  0.13924  3.41276  2.77566     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     28   3.36028  0.13924  3.41276  2.77566     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     29   3.36028  0.13924  3.41276  2.77566     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     30   2.90299  3.52335  0.12446  3.42144     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     31   3.36028  0.13924  3.41276  2.77566     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     32   3.02537  2.55482  3.07592  0.18922     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     33   2.90299  3.52335  0.12446  3.42144     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     34   0.15052  3.31717  2.76074  3.21294     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     35   0.15052  3.31717  2.76074  3.21294     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     36   3.02537  2.55482  3.07592  0.18922     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     37   3.02537  2.55482  3.07592  0.18922     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     38   3.02537  2.55482  3.07592  0.18922     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     39   0.15052  3.31717  2.76074  3.21294     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     40   0.15052  3.31717  2.76074  3.21294     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     41   2.90299  3.52335  0.12446  3.42144     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     42   3.36028  0.13924  3.41276  2.77566     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     43   0.15052  3.31717  2.76074  3.21294     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     44   3.02537  2.55482  3.07592  0.18922     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     45   0.15052  3.31717  2.76074  3.21294     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01930  3.95735        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_ninem_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:13:15 2012
NSEQ  5
EFFN  3.168945
CKSUM 2727964424
STATS LOCAL MSV       -8.0675  0.71932
STATS LOCAL VITERBI   -7.7708  0.71932
STATS LOCAL FORWARD   -3.8493  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34344  1.21077  1.38248  1.66004
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  0.00000        *
      1   3.37482  0.13738  3.42671  2.78637      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      2   3.03791  2.56284  3.08799  0.18707      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      3   2.91196  3.53626  0.12295  3.43565      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      4   3.37482  0.13738  3.42671  2.78637      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      5   2.91196  3.53626  0.12295  3.43565      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      6   0.14875  3.32976  2.76899  3.22669      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      7   3.37482  0.13738  3.42671  2.78637      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      8   3.37482  0.13738  3.42671  2.78637      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      9   3.37482  0.13738  3.42671  2.78637      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     10   3.37482  0.13738  3.42671  2.78637     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     11   0.14875  3.32976  2.76899  3.22669     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     12   2.91196  3.53626  0.12295  3.43565     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     13   2.91196  3.53626  0.12295  3.43565     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     14   3.03791  2.56284  3.08799  0.18707     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     15   3.37482  0.13738  3.42671  2.78637     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     16   0.14875  3.32976  2.76899  3.22669     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     17   0.14875  3.32976  2.76899  3.22669     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     18   2.91196  3.53626  0.12295  3.43565     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     19   3.37482  0.13738  3.42671  2.78637     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     20   2.91196  3.53626  0.12295  3.43565     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     21   2.91196  3.53626  0.12295  3.43565     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     22   2.91196  3.53626  0.12295  3.43565     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     23   0.14875  3.32976  2.76899  3.22669     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     24   3.37482  0.13738  3.42671  2.78637     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     25   3.03791  2.56284  3.08799  0.18707     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     26   0.14875  3.32976  2.76899  3.22669     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     27   3.37482  0.13738  3.42671  2.78637     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     28   3.37482  0.13738  3.42671  2.78637     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     29   3.37482  0.13738  3.42671  2.78637     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     30   2.91196  3.53626  0.12295  3.43565     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     31   3.37482  0.13738  3.42671  2.78637     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     32   3.03791  2.56284  3.08799  0.18707     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     33   2.91196  3.53626  0.12295  3.43565     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     34   0.14875  3.32976  2.76899  3.22669     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     35   0.14875  3.32976  2.76899  3.22669     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     36   3.03791  2.56284  3.08799  0.18707     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     37   3.03791  2.56284  3.08799  0.18707     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     38   3.03791  2.56284  3.08799  0.18707     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     39   0.14875  3.32976  2.76899  3.22669     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     40   0.14875  3.32976  2.76899  3.22669     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     41   2.91196  3.53626  0.12295  3.43565     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     42   3.37482  0.13738  3.42671  2.78637     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     43   0.14875  3.32976  2.76899  3.22669     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     44   3.03791  2.56284  3.08799  0.18707     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     45   0.14875  3.32976  2.76899  3.22669     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01916  3.96442        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_ninen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:13:23 2012
NSEQ  4
EFFN  3.230469
CKSUM 2299958284
STATS LOCAL MSV       -8.1930  0.71932
STATS LOCAL VITERBI   -7.7386  0.71932
STATS LOCAL FORWARD   -3.7873  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.46710  1.20843  1.27156  1.65891
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  0.00000        *
      1   3.39853  0.13441  3.44944  2.80375      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      2   3.05845  2.57594  3.10775  0.18362      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      3   2.92650  3.55724  0.12055  3.45877      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      4   3.39853  0.13441  3.44944  2.80375      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      5   2.92650  3.55724  0.12055  3.45877      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      6   0.14592  3.35028  2.78241  3.24912      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      7   3.39853  0.13441  3.44944  2.80375      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      8   3.39853  0.13441  3.44944  2.80375      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      9   3.39853  0.13441  3.44944  2.80375      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     10   3.39853  0.13441  3.44944  2.80375     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     11   0.14592  3.35028  2.78241  3.24912     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     12   2.92650  3.55724  0.12055  3.45877     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     13   2.92650  3.55724  0.12055  3.45877     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     14   3.05845  2.57594  3.10775  0.18362     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     15   3.39853  0.13441  3.44944  2.80375     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     16   0.14592  3.35028  2.78241  3.24912     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     17   2.92650  3.55724  0.12055  3.45877     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     18   1.65135  2.79903  0.38930  2.66201     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     19   3.39853  0.13441  3.44944  2.80375     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     20   2.92650  3.55724  0.12055  3.45877     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     21   2.92650  3.55724  0.12055  3.45877     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     22   2.92650  3.55724  0.12055  3.45877     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     23   2.92650  3.55724  0.12055  3.45877     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     24   3.39853  0.13441  3.44944  2.80375     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     25   3.05845  2.57594  3.10775  0.18362     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     26   0.14592  3.35028  2.78241  3.24912     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     27   3.39853  0.13441  3.44944  2.80375     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     28   3.39853  0.13441  3.44944  2.80375     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     29   3.39853  0.13441  3.44944  2.80375     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     30   2.92650  3.55724  0.12055  3.45877     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     31   3.39853  0.13441  3.44944  2.80375     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     32   3.05845  2.57594  3.10775  0.18362     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     33   2.92650  3.55724  0.12055  3.45877     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     34   0.14592  3.35028  2.78241  3.24912     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     35   0.14592  3.35028  2.78241  3.24912     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     36   3.05845  2.57594  3.10775  0.18362     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     37   3.05845  2.57594  3.10775  0.18362     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     38   3.05845  2.57594  3.10775  0.18362     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     39   0.14592  3.35028  2.78241  3.24912     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     40   0.14592  3.35028  2.78241  3.24912     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     41   2.92650  3.55724  0.12055  3.45877     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     42   3.39853  0.13441  3.44944  2.80375     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     43   0.14592  3.35028  2.78241  3.24912     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     44   3.05845  2.57594  3.10775  0.18362     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     45   0.14592  3.35028  2.78241  3.24912     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01894  3.97602        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_nineo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:13:30 2012
NSEQ  11
EFFN  3.440186
CKSUM 1151203971
STATS LOCAL MSV       -7.5786  0.71933
STATS LOCAL VITERBI   -7.5431  0.71933
STATS LOCAL FORWARD   -4.0370  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.38732  1.33960  1.22064  1.64370
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  0.00000        *
      1   0.13712  3.41716  2.82583  3.32234      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
      2   3.47557  0.12526  3.52321  2.85981      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
      3   2.97309  3.62505  0.11316  3.53363      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
      4   0.13712  3.41716  2.82583  3.32234      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
      5   2.97309  3.62505  0.11316  3.53363      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
      6   0.13712  3.41716  2.82583  3.32234      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
      7   3.47557  0.12526  3.52321  2.85981      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
      8   3.47557  0.12526  3.52321  2.85981      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
      9   3.12600  2.61890  3.17272  0.17277      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     10   2.61030  0.48486  2.68062  1.41805     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     11   0.13712  3.41716  2.82583  3.32234     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     12   2.97309  3.62505  0.11316  3.53363     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     13   2.97309  3.62505  0.11316  3.53363     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     14   3.12600  2.61890  3.17272  0.17277     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     15   3.47557  0.12526  3.52321  2.85981     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     16   0.13712  3.41716  2.82583  3.32234     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     17   2.97309  3.62505  0.11316  3.53363     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     18   2.97309  3.62505  0.11316  3.53363     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     19   3.47557  0.12526  3.52321  2.85981     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     20   2.97309  3.62505  0.11316  3.53363     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     21   2.97309  3.62505  0.11316  3.53363     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     22   2.97309  3.62505  0.11316  3.53363     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     23   2.97309  3.62505  0.11316  3.53363     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     24   3.47557  0.12526  3.52321  2.85981     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     25   3.12600  2.61890  3.17272  0.17277     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     26   0.13712  3.41716  2.82583  3.32234     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     27   3.47557  0.12526  3.52321  2.85981     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     28   3.47557  0.12526  3.52321  2.85981     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     29   3.47557  0.12526  3.52321  2.85981     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     30   2.97309  3.62505  0.11316  3.53363     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     31   3.47557  0.12526  3.52321  2.85981     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     32   3.12600  2.61890  3.17272  0.17277     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     33   2.24285  1.62386  0.52442  2.25562     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     34   0.13712  3.41716  2.82583  3.32234     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     35   1.94892  3.03443  0.28120  2.90791     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     36   3.12600  2.61890  3.17272  0.17277     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     37   3.12600  2.61890  3.17272  0.17277     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     38   3.12600  2.61890  3.17272  0.17277     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     39   0.13712  3.41716  2.82583  3.32234     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     40   0.13712  3.41716  2.82583  3.32234     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     41   2.97309  3.62505  0.11316  3.53363     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     42   3.47557  0.12526  3.52321  2.85981     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     43   0.13712  3.41716  2.82583  3.32234     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     44   3.12600  2.61890  3.17272  0.17277     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
     45   0.13712  3.41716  2.82583  3.32234     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01821  4.01461        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_ninep_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:13:35 2012
NSEQ  610
EFFN  4.007034
CKSUM 1262486263
STATS LOCAL MSV       -7.0516  0.71933
STATS LOCAL VITERBI   -7.7102  0.71933
STATS LOCAL FORWARD   -3.8833  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.44177  1.25215  1.23730  1.67432
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  0.00000        *
      1   1.14572  1.16543  2.09655  1.39700      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
      2   1.81419  0.98237  2.18997  1.04787      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
      3   2.86297  3.69678  0.11517  3.61619      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
      4   2.98447  0.22606  2.95701  2.30470      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
      5   3.07994  3.78278  0.09787  3.70849      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
      6   0.11850  3.57637  2.92823  3.49716      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
      7   3.65723  0.10638  3.69668  2.98961      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
      8   3.65723  0.10638  3.69668  2.98961      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
      9   3.56466  0.12429  3.60782  2.78941      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     10   3.60914  0.11551  3.65048  2.88174     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     11   0.11850  3.57637  2.92823  3.49716     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     12   3.07994  3.78278  0.09787  3.70849     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     13   3.07994  3.78278  0.09787  3.70849     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     14   3.29117  2.72365  3.33142  0.14918     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     15   3.65723  0.10638  3.69668  2.98961     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     16   0.11850  3.57637  2.92823  3.49716     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     17   2.93580  3.72759  0.10886  3.64948     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     18   2.87638  3.50440  0.14021  3.11409     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     19   3.60880  0.11558  3.65015  2.88101     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     20   2.86023  3.69559  0.11542  3.61490     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     21   2.94694  3.73212  0.10794  3.65437     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     22   3.07994  3.78278  0.09787  3.70849     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     23   0.27754  3.04298  1.98392  2.86236     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     24   2.22793  0.70822  2.44636  1.16116     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     25   3.07400  2.19331  3.12394  0.22535     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     26   0.12732  3.54052  2.82860  3.45911     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     27   3.65723  0.10638  3.69668  2.98961     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     28   3.60785  0.11576  3.64924  2.87898     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     29   3.65723  0.10638  3.69668  2.98961     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     30   2.95516  3.73544  0.10727  3.65794     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     31   3.65723  0.10638  3.69668  2.98961     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     32   3.25323  2.61818  3.29510  0.16093     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     33   3.07994  3.78278  0.09787  3.70849     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     34   0.12719  3.54105  2.83002  3.45968     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     35   2.59329  3.49128  0.15335  3.29870     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     36   3.24508  2.59646  3.28731  0.16353     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     37   3.29117  2.72365  3.33142  0.14918     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     38   3.29117  2.72365  3.33142  0.14918     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     39   0.11850  3.57637  2.92823  3.49716     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     40   0.11850  3.57637  2.92823  3.49716     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     41   3.07994  3.78278  0.09787  3.70849     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     42   3.65723  0.10638  3.69668  2.98961     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     43   0.11850  3.57637  2.92823  3.49716     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     44   3.29117  2.72365  3.33142  0.14918     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
     45   0.13605  3.29324  2.88454  3.37586     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01651  4.11203        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_nineteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:20:52 2012
NSEQ  29
EFFN  4.053345
CKSUM 688373050
STATS LOCAL MSV       -7.0323  0.71932
STATS LOCAL VITERBI   -7.6275  0.71932
STATS LOCAL FORWARD   -3.5999  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.53105  1.23724  1.21047  1.63245
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  0.00000        *
      1   2.03882  1.06013  2.33707  0.85145      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
      2   3.27048  0.19609  3.32492  2.26243      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
      3   3.08764  3.79422  0.09686  3.72119      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
      4   3.67051  0.10513  3.70935  2.99900      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
      5   3.08764  3.79422  0.09686  3.72119      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
      6   0.11725  3.58812  2.93578  3.51009      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
      7   3.67051  0.10513  3.70935  2.99900      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
      8   3.67051  0.10513  3.70935  2.99900      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
      9   2.58614  0.64370  2.65678  1.11117      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     10   3.37684  0.16773  3.42749  2.43276     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     11   0.11725  3.58812  2.93578  3.51009     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     12   3.08764  3.79422  0.09686  3.72119     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     13   3.08764  3.79422  0.09686  3.72119     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     14   3.30362  2.73157  3.34338  0.14755     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     15   3.67051  0.10513  3.70935  2.99900     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     16   0.11725  3.58812  2.93578  3.51009     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     17   3.08764  3.79422  0.09686  3.72119     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     18   3.08764  3.79422  0.09686  3.72119     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     19   3.03310  2.08635  3.08496  0.24595     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     20   3.08764  3.79422  0.09686  3.72119     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     21   2.08863  1.84152  0.79800  1.31923     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     22   3.08764  3.79422  0.09686  3.72119     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     23   3.08764  3.79422  0.09686  3.72119     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     24   2.58614  0.64370  2.65678  1.11117     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     25   3.24588  0.20324  3.30115  2.22429     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     26   0.11725  3.58812  2.93578  3.51009     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     27   3.67051  0.10513  3.70935  2.99900     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     28   3.67051  0.10513  3.70935  2.99900     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     29   3.03310  2.08635  3.08496  0.24595     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     30   3.08764  3.79422  0.09686  3.72119     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     31   3.67051  0.10513  3.70935  2.99900     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     32   3.30362  2.73157  3.34338  0.14755     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     33   3.08764  3.79422  0.09686  3.72119     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     34   0.11725  3.58812  2.93578  3.51009     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     35   3.08764  3.79422  0.09686  3.72119     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     36   3.24588  0.20324  3.30115  2.22429     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     37   3.30362  2.73157  3.34338  0.14755     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     38   3.30362  2.73157  3.34338  0.14755     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     39   0.11725  3.58812  2.93578  3.51009     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     40   0.11725  3.58812  2.93578  3.51009     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     41   3.08764  3.79422  0.09686  3.72119     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     42   3.67051  0.10513  3.70935  2.99900     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     43   0.11725  3.58812  2.93578  3.51009     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     44   3.30362  2.73157  3.34338  0.14755     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
     45   0.11725  3.58812  2.93578  3.51009     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01638  4.11958        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:10:54 2012
NSEQ  6
EFFN  3.225586
CKSUM 92353348
STATS LOCAL MSV       -8.1186  0.71931
STATS LOCAL VITERBI   -7.6232  0.71931
STATS LOCAL FORWARD   -3.7345  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.35281  1.21043  1.37640  1.65584
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  0.00000        *
      1   3.05683  2.57491  3.10619  0.18389      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      2   3.05683  2.57491  3.10619  0.18389      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      3   2.92536  3.55560  0.12074  3.45696      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      4   3.39667  0.13464  3.44765  2.80239      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      5   0.30359  2.90318  1.93256  2.77723      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      6   0.14614  3.34867  2.78135  3.24736      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      7   3.39667  0.13464  3.44765  2.80239      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      8   3.39667  0.13464  3.44765  2.80239      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      9   3.39667  0.13464  3.44765  2.80239      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     10   3.39667  0.13464  3.44765  2.80239     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     11   0.14614  3.34867  2.78135  3.24736     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     12   0.14614  3.34867  2.78135  3.24736     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     13   2.92536  3.55560  0.12074  3.45696     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     14   3.05683  2.57491  3.10619  0.18389     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     15   3.39667  0.13464  3.44765  2.80239     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     16   0.14614  3.34867  2.78135  3.24736     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     17   2.92536  3.55560  0.12074  3.45696     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     18   2.92536  3.55560  0.12074  3.45696     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     19   3.05683  2.57491  3.10619  0.18389     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     20   2.92536  3.55560  0.12074  3.45696     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     21   2.92536  3.55560  0.12074  3.45696     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     22   2.92536  3.55560  0.12074  3.45696     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     23   0.14614  3.34867  2.78135  3.24736     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     24   3.39667  0.13464  3.44765  2.80239     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     25   3.05683  2.57491  3.10619  0.18389     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     26   0.14614  3.34867  2.78135  3.24736     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     27   3.39667  0.13464  3.44765  2.80239     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     28   3.39667  0.13464  3.44765  2.80239     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     29   3.39667  0.13464  3.44765  2.80239     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     30   2.92536  3.55560  0.12074  3.45696     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     31   3.39667  0.13464  3.44765  2.80239     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     32   3.39667  0.13464  3.44765  2.80239     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     33   2.92536  3.55560  0.12074  3.45696     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     34   0.14614  3.34867  2.78135  3.24736     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     35   2.92536  3.55560  0.12074  3.45696     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     36   3.39667  0.13464  3.44765  2.80239     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     37   3.05683  2.57491  3.10619  0.18389     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     38   3.05683  2.57491  3.10619  0.18389     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     39   0.14614  3.34867  2.78135  3.24736     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     40   0.14614  3.34867  2.78135  3.24736     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     41   2.92536  3.55560  0.12074  3.45696     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     42   3.39667  0.13464  3.44765  2.80239     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     43   0.14614  3.34867  2.78135  3.24736     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     44   3.05683  2.57491  3.10619  0.18389     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     45   0.14614  3.34867  2.78135  3.24736     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01896  3.97511        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_seven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:11:44 2012
NSEQ  2
EFFN  2.000000
CKSUM 2919369856
STATS LOCAL MSV       -7.6061  0.72738
STATS LOCAL VITERBI   -8.1247  0.72738
STATS LOCAL FORWARD   -3.1589  0.72738
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39994  1.35690  1.20998  1.62087
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_seventeen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:20:31 2012
NSEQ  315
EFFN  3.917313
CKSUM 3308305825
STATS LOCAL MSV       -6.8187  0.71931
STATS LOCAL VITERBI   -7.7150  0.71931
STATS LOCAL FORWARD   -3.9240  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.48096  1.28928  1.21174  1.61229
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  0.00000        *
      1   1.70907  1.22019  1.38354  1.29791      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
      2   2.55787  1.37120  2.56594  0.52445      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
      3   3.06461  3.76005  0.09993  3.68324      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
      4   3.09656  0.15677  3.38125  2.71979      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
      5   3.06461  3.76005  0.09993  3.68324      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
      6   0.12104  3.55308  2.91328  3.47156      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
      7   2.74203  0.43166  2.81020  1.48749      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
      8   3.63085  0.10891  3.67153  2.97093      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
      9   3.52194  0.13035  3.56685  2.74224      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     10   3.63085  0.10891  3.67153  2.97093     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     11   0.12104  3.55308  2.91328  3.47156     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     12   3.06461  3.76005  0.09993  3.68324     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     13   3.06461  3.76005  0.09993  3.68324     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     14   3.26661  2.70806  3.30783  0.15245     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     15   3.63085  0.10891  3.67153  2.97093     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     16   0.12104  3.55308  2.91328  3.47156     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     17   3.06461  3.76005  0.09993  3.68324     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     18   3.06461  3.76005  0.09993  3.68324     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     19   3.63085  0.10891  3.67153  2.97093     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     20   3.06461  3.76005  0.09993  3.68324     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     21   3.06461  3.76005  0.09993  3.68324     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     22   3.06461  3.76005  0.09993  3.68324     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     23   0.53592  2.70900  1.30245  2.57174     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     24   2.44202  0.99805  2.46142  0.77848     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     25   2.98828  2.53537  3.16297  0.18863     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     26   0.12104  3.55308  2.91328  3.47156     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     27   3.63085  0.10891  3.67153  2.97093     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     28   3.63085  0.10891  3.67153  2.97093     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     29   3.63085  0.10891  3.67153  2.97093     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     30   3.06461  3.76005  0.09993  3.68324     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     31   3.63085  0.10891  3.67153  2.97093     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     32   3.26661  2.70806  3.30783  0.15245     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     33   3.06461  3.76005  0.09993  3.68324     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     34   0.12104  3.55308  2.91328  3.47156     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     35   3.06461  3.76005  0.09993  3.68324     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     36   3.26661  2.70806  3.30783  0.15245     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     37   3.26661  2.70806  3.30783  0.15245     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     38   3.26661  2.70806  3.30783  0.15245     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     39   0.12104  3.55308  2.91328  3.47156     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     40   0.12104  3.55308  2.91328  3.47156     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     41   3.06461  3.76005  0.09993  3.68324     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     42   3.63085  0.10891  3.67153  2.97093     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     43   0.12104  3.55308  2.91328  3.47156     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     44   3.26661  2.70806  3.30783  0.15245     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
     45   0.12104  3.55308  2.91328  3.47156     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01676  4.09722        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_six_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:11:36 2012
NSEQ  16
EFFN  3.230469
CKSUM 3506547780
STATS LOCAL MSV       -8.2747  0.71931
STATS LOCAL VITERBI   -7.5578  0.71931
STATS LOCAL FORWARD   -3.9985  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39108  1.33292  1.20881  1.66636
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  0.00000        *
      1   0.14592  3.35028  2.78241  3.24912      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      2   3.39853  0.13441  3.44944  2.80375      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      3   2.92650  3.55724  0.12055  3.45877      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      4   0.14592  3.35028  2.78241  3.24912      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      5   2.92650  3.55724  0.12055  3.45877      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      6   0.14592  3.35028  2.78241  3.24912      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      7   3.39853  0.13441  3.44944  2.80375      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      8   3.39853  0.13441  3.44944  2.80375      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
      9   3.05845  2.57594  3.10775  0.18362      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     10   3.39853  0.13441  3.44944  2.80375     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     11   0.14592  3.35028  2.78241  3.24912     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     12   2.92650  3.55724  0.12055  3.45877     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     13   2.92650  3.55724  0.12055  3.45877     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     14   3.05845  2.57594  3.10775  0.18362     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     15   3.39853  0.13441  3.44944  2.80375     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     16   0.14592  3.35028  2.78241  3.24912     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     17   2.92650  3.55724  0.12055  3.45877     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     18   2.92650  3.55724  0.12055  3.45877     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     19   3.39853  0.13441  3.44944  2.80375     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     20   2.92650  3.55724  0.12055  3.45877     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     21   2.92650  3.55724  0.12055  3.45877     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     22   2.92650  3.55724  0.12055  3.45877     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     23   2.92650  3.55724  0.12055  3.45877     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     24   3.39853  0.13441  3.44944  2.80375     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     25   3.05845  2.57594  3.10775  0.18362     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     26   0.14592  3.35028  2.78241  3.24912     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     27   3.39853  0.13441  3.44944  2.80375     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     28   3.39853  0.13441  3.44944  2.80375     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     29   3.39853  0.13441  3.44944  2.80375     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     30   2.92650  3.55724  0.12055  3.45877     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     31   3.39853  0.13441  3.44944  2.80375     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     32   3.05845  2.57594  3.10775  0.18362     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     33   2.92650  3.55724  0.12055  3.45877     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     34   0.14592  3.35028  2.78241  3.24912     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     35   1.65135  2.79903  0.38930  2.66201     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     36   3.05845  2.57594  3.10775  0.18362     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     37   3.05845  2.57594  3.10775  0.18362     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     38   3.05845  2.57594  3.10775  0.18362     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     39   0.14592  3.35028  2.78241  3.24912     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     40   0.14592  3.35028  2.78241  3.24912     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     41   2.92650  3.55724  0.12055  3.45877     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     42   3.39853  0.13441  3.44944  2.80375     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     43   0.14592  3.35028  2.78241  3.24912     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     44   3.05845  2.57594  3.10775  0.18362     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
     45   0.14592  3.35028  2.78241  3.24912     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01894  3.97602        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_sixteena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:16:12 2012
NSEQ  44
EFFN  3.585205
CKSUM 645047424
STATS LOCAL MSV       -7.5020  0.71933
STATS LOCAL VITERBI   -7.7177  0.71933
STATS LOCAL FORWARD   -3.8505  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.44682  1.21642  1.26677  1.67850
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  0.00000        *
      1   2.01891  0.44736  2.35801  2.01530      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
      2   3.40225  0.14546  3.45187  2.65373      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
      3   3.00287  3.66877  0.10867  3.58200      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
      4   2.75860  0.19212  3.16597  2.67018      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
      5   3.00287  3.66877  0.10867  3.58200      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
      6   0.13171  3.46074  2.85396  3.37014      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
      7   3.52559  0.11970  3.57103  2.89585      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
      8   3.52559  0.11970  3.57103  2.89585      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
      9   2.79989  0.18650  3.19116  2.68533      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     10   3.52559  0.11970  3.57103  2.89585     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     11   0.13171  3.46074  2.85396  3.37014     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     12   3.00287  3.66877  0.10867  3.58200     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     13   3.00287  3.66877  0.10867  3.58200     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     14   3.17060  2.64719  3.21559  0.16601     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     15   3.52559  0.11970  3.57103  2.89585     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     16   0.13171  3.46074  2.85396  3.37014     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     17   3.00287  3.66877  0.10867  3.58200     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     18   1.51507  2.79099  0.43315  2.65382     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     19   3.52559  0.11970  3.57103  2.89585     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     20   3.00287  3.66877  0.10867  3.58200     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     21   3.00287  3.66877  0.10867  3.58200     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     22   3.00287  3.66877  0.10867  3.58200     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     23   0.15890  3.35672  2.60794  3.26017     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     24   2.57661  1.39705  2.64361  0.50164     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     25   3.17060  2.64719  3.21559  0.16601     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     26   0.13171  3.46074  2.85396  3.37014     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     27   3.52559  0.11970  3.57103  2.89585     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     28   3.52559  0.11970  3.57103  2.89585     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     29   3.52559  0.11970  3.57103  2.89585     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     30   3.00287  3.66877  0.10867  3.58200     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     31   3.52559  0.11970  3.57103  2.89585     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     32   3.17060  2.64719  3.21559  0.16601     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     33   3.00287  3.66877  0.10867  3.58200     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     34   0.13171  3.46074  2.85396  3.37014     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     35   2.43762  3.38266  0.17325  3.27685     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     36   3.17060  2.64719  3.21559  0.16601     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     37   3.17060  2.64719  3.21559  0.16601     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     38   3.17060  2.64719  3.21559  0.16601     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     39   0.13171  3.46074  2.85396  3.37014     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     40   0.13171  3.46074  2.85396  3.37014     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     41   3.00287  3.66877  0.10867  3.58200     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     42   3.52559  0.11970  3.57103  2.89585     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     43   0.13171  3.46074  2.85396  3.37014     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     44   3.17060  2.64719  3.21559  0.16601     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
     45   0.13171  3.46074  2.85396  3.37014     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01775  4.04045        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_sixteenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:16:20 2012
NSEQ  18
EFFN  3.238770
CKSUM 1315903361
STATS LOCAL MSV       -8.3026  0.71933
STATS LOCAL VITERBI   -7.5704  0.71933
STATS LOCAL FORWARD   -4.0875  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47286  1.23053  1.25337  1.64479
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  0.00000        *
      1   0.14555  3.35302  2.78419  3.25212      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
      2   2.56199  0.50253  2.63307  1.40246      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
      3   2.92843  3.56004  0.12024  3.46185      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
      4   3.40169  0.13402  3.45247  2.80607      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
      5   2.92843  3.56004  0.12024  3.46185      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
      6   0.14555  3.35302  2.78419  3.25212      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
      7   3.40169  0.13402  3.45247  2.80607      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
      8   3.40169  0.13402  3.45247  2.80607      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
      9   3.06119  2.57769  3.11039  0.18316      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     10   3.40169  0.13402  3.45247  2.80607     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     11   0.14555  3.35302  2.78419  3.25212     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     12   2.92843  3.56004  0.12024  3.46185     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     13   3.40169  0.13402  3.45247  2.80607     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     14   3.06119  2.57769  3.11039  0.18316     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     15   3.40169  0.13402  3.45247  2.80607     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     16   0.14555  3.35302  2.78419  3.25212     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     17   2.92843  3.56004  0.12024  3.46185     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     18   2.92843  3.56004  0.12024  3.46185     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     19   3.40169  0.13402  3.45247  2.80607     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     20   2.92843  3.56004  0.12024  3.46185     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     21   2.92843  3.56004  0.12024  3.46185     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     22   2.92843  3.56004  0.12024  3.46185     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     23   2.92843  3.56004  0.12024  3.46185     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     24   3.40169  0.13402  3.45247  2.80607     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     25   3.06119  2.57769  3.11039  0.18316     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     26   0.14555  3.35302  2.78419  3.25212     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     27   3.40169  0.13402  3.45247  2.80607     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     28   3.40169  0.13402  3.45247  2.80607     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     29   3.40169  0.13402  3.45247  2.80607     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     30   2.92843  3.56004  0.12024  3.46185     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     31   3.40169  0.13402  3.45247  2.80607     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     32   3.06119  2.57769  3.11039  0.18316     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     33   2.92843  3.56004  0.12024  3.46185     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     34   0.14555  3.35302  2.78419  3.25212     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     35   2.92843  3.56004  0.12024  3.46185     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     36   3.06119  2.57769  3.11039  0.18316     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     37   3.06119  2.57769  3.11039  0.18316     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     38   3.06119  2.57769  3.11039  0.18316     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     39   0.14555  3.35302  2.78419  3.25212     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     40   0.14555  3.35302  2.78419  3.25212     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     41   2.92843  3.56004  0.12024  3.46185     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     42   3.40169  0.13402  3.45247  2.80607     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     43   0.14555  3.35302  2.78419  3.25212     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     44   3.06119  2.57769  3.11039  0.18316     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
     45   0.14555  3.35302  2.78419  3.25212     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01891  3.97758        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_sixteenc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:16:25 2012
NSEQ  77
EFFN  3.689270
CKSUM 597093898
STATS LOCAL MSV       -7.5676  0.71931
STATS LOCAL VITERBI   -7.7877  0.71931
STATS LOCAL FORWARD   -3.9275  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.51890  1.43798  1.04634  1.64808
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  0.00000        *
      1   2.40425  3.08130  0.22999  2.67035      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
      2   3.01817  2.22960  3.06947  0.22679      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
      3   2.61265  3.50636  0.14664  3.40965      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
      4   2.00072  0.72874  2.10141  1.34721      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
      5   2.31739  3.33257  0.19122  3.22347      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
      6   0.12813  3.49076  2.87327  3.40309      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
      7   3.45939  0.13642  3.50685  2.71682      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
      8   3.55992  0.11605  3.60383  2.92044      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
      9   3.30137  0.17320  3.35448  2.43877      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     10   3.38645  0.15256  3.43656  2.58377     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     11   0.12813  3.49076  2.87327  3.40309     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     12   3.02313  3.69864  0.10572  3.61510     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     13   3.02313  3.69864  0.10572  3.61510     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     14   0.15781  3.32082  2.80161  3.01275     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     15   3.20158  2.66683  3.24536  0.16149     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     16   3.02313  3.69864  0.10572  3.61510     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     17   3.02313  3.69864  0.10572  3.61510     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     18   2.94893  3.54129  0.12822  3.24501     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     19   3.33426  0.16497  3.38622  2.49375     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     20   3.02313  3.69864  0.10572  3.61510     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     21   3.02313  3.69864  0.10572  3.61510     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     22   3.02313  3.69864  0.10572  3.61510     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     23   1.90722  3.06142  0.28552  2.93628     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     24   3.20158  2.66683  3.24536  0.16149     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     25   2.74217  3.57362  0.13151  3.48193     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     26   0.12813  3.49076  2.87327  3.40309     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     27   3.55992  0.11605  3.60383  2.92044     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     28   3.55992  0.11605  3.60383  2.92044     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     29   3.46856  0.13448  3.51567  2.73426     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     30   3.02313  3.69864  0.10572  3.61510     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     31   3.55992  0.11605  3.60383  2.92044     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     32   2.94225  2.07204  2.99664  0.25959     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     33   3.02313  3.69864  0.10572  3.61510     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     34   0.12813  3.49076  2.87327  3.40309     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     35   2.82886  3.61528  0.12261  3.52664     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     36   3.20158  2.66683  3.24536  0.16149     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     37   3.20158  2.66683  3.24536  0.16149     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     38   3.20158  2.66683  3.24536  0.16149     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     39   0.12813  3.49076  2.87327  3.40309     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     40   0.12813  3.49076  2.87327  3.40309     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     41   3.02313  3.69864  0.10572  3.61510     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     42   3.55992  0.11605  3.60383  2.92044     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     43   0.12813  3.49076  2.87327  3.40309     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     44   3.20158  2.66683  3.24536  0.16149     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
     45   0.12813  3.49076  2.87327  3.40309     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01742  4.05859        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_sixteend_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:16:31 2012
NSEQ  4
EFFN  3.183594
CKSUM 2286681022
STATS LOCAL MSV       -8.2107  0.71933
STATS LOCAL VITERBI   -7.8128  0.71933
STATS LOCAL FORWARD   -3.7084  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40199  1.23646  1.19419  1.82924
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  0.00000        *
      1   0.14807  3.33468  2.77222  3.23207      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      2   3.04283  2.56598  3.09273  0.18624      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      3   2.91546  3.54130  0.12237  3.44120      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      4   3.38051  0.13666  3.43217  2.79055      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      5   2.91546  3.54130  0.12237  3.44120      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      6   0.14807  3.33468  2.77222  3.23207      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      7   3.38051  0.13666  3.43217  2.79055      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      8   3.38051  0.13666  3.43217  2.79055      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      9   3.38051  0.13666  3.43217  2.79055      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     10   3.38051  0.13666  3.43217  2.79055     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     11   0.14807  3.33468  2.77222  3.23207     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     12   2.91546  3.54130  0.12237  3.44120     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     13   2.91546  3.54130  0.12237  3.44120     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     14   0.14807  3.33468  2.77222  3.23207     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     15   3.04283  2.56598  3.09273  0.18624     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     16   2.91546  3.54130  0.12237  3.44120     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     17   2.91546  3.54130  0.12237  3.44120     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     18   2.91546  3.54130  0.12237  3.44120     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     19   3.38051  0.13666  3.43217  2.79055     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     20   2.91546  3.54130  0.12237  3.44120     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     21   0.14807  3.33468  2.77222  3.23207     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     22   2.91546  3.54130  0.12237  3.44120     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     23   2.91546  3.54130  0.12237  3.44120     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     24   3.38051  0.13666  3.43217  2.79055     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     25   3.38051  0.13666  3.43217  2.79055     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     26   0.14807  3.33468  2.77222  3.23207     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     27   3.38051  0.13666  3.43217  2.79055     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     28   3.38051  0.13666  3.43217  2.79055     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     29   3.38051  0.13666  3.43217  2.79055     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     30   2.91546  3.54130  0.12237  3.44120     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     31   3.38051  0.13666  3.43217  2.79055     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     32   2.60042  0.45814  2.67092  1.49561     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     33   2.91546  3.54130  0.12237  3.44120     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     34   0.14807  3.33468  2.77222  3.23207     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     35   2.91546  3.54130  0.12237  3.44120     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     36   3.04283  2.56598  3.09273  0.18624     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     37   3.04283  2.56598  3.09273  0.18624     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     38   3.04283  2.56598  3.09273  0.18624     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     39   0.14807  3.33468  2.77222  3.23207     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     40   0.14807  3.33468  2.77222  3.23207     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     41   2.91546  3.54130  0.12237  3.44120     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     42   3.38051  0.13666  3.43217  2.79055     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     43   0.14807  3.33468  2.77222  3.23207     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     44   3.04283  2.56598  3.09273  0.18624     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     45   0.14807  3.33468  2.77222  3.23207     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01911  3.96719        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_tena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:13:56 2012
NSEQ  26
EFFN  3.164307
CKSUM 3165523299
STATS LOCAL MSV       -8.2319  0.71931
STATS LOCAL VITERBI   -7.4689  0.71931
STATS LOCAL FORWARD   -4.1879  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34091  1.26975  1.31625  1.66413
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  0.00000        *
      1   3.37302  0.13761  3.42498  2.78504      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
      2   3.37302  0.13761  3.42498  2.78504      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
      3   0.14897  3.32819  2.76797  3.22498      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
      4   3.03635  2.56184  3.08649  0.18734      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
      5   2.91085  3.53465  0.12314  3.43388      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
      6   0.14897  3.32819  2.76797  3.22498      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
      7   3.37302  0.13761  3.42498  2.78504      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
      8   3.37302  0.13761  3.42498  2.78504      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
      9   3.03635  2.56184  3.08649  0.18734      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     10   3.37302  0.13761  3.42498  2.78504     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     11   0.14897  3.32819  2.76797  3.22498     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     12   2.91085  3.53465  0.12314  3.43388     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     13   0.14897  3.32819  2.76797  3.22498     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     14   3.03635  2.56184  3.08649  0.18734     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     15   3.37302  0.13761  3.42498  2.78504     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     16   0.14897  3.32819  2.76797  3.22498     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     17   2.91085  3.53465  0.12314  3.43388     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     18   0.14897  3.32819  2.76797  3.22498     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     19   3.37302  0.13761  3.42498  2.78504     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     20   2.91085  3.53465  0.12314  3.43388     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     21   2.91085  3.53465  0.12314  3.43388     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     22   2.91085  3.53465  0.12314  3.43388     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     23   2.91085  3.53465  0.12314  3.43388     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     24   3.37302  0.13761  3.42498  2.78504     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     25   2.91085  3.53465  0.12314  3.43388     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     26   0.14897  3.32819  2.76797  3.22498     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     27   3.37302  0.13761  3.42498  2.78504     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     28   3.37302  0.13761  3.42498  2.78504     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     29   3.37302  0.13761  3.42498  2.78504     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     30   2.91085  3.53465  0.12314  3.43388     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     31   3.37302  0.13761  3.42498  2.78504     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     32   3.03635  2.56184  3.08649  0.18734     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     33   2.91085  3.53465  0.12314  3.43388     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     34   0.14897  3.32819  2.76797  3.22498     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     35   2.91085  3.53465  0.12314  3.43388     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     36   3.03635  2.56184  3.08649  0.18734     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     37   3.03635  2.56184  3.08649  0.18734     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     38   3.03635  2.56184  3.08649  0.18734     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     39   0.14897  3.32819  2.76797  3.22498     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     40   0.14897  3.32819  2.76797  3.22498     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     41   2.91085  3.53465  0.12314  3.43388     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     42   3.37302  0.13761  3.42498  2.78504     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     43   0.14897  3.32819  2.76797  3.22498     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     44   3.03635  2.56184  3.08649  0.18734     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
     45   0.14897  3.32819  2.76797  3.22498     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01918  3.96353        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_tenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:14:01 2012
NSEQ  3
EFFN  3.000000
CKSUM 2046295705
STATS LOCAL MSV       -7.9249  0.71995
STATS LOCAL VITERBI   -7.7263  0.71995
STATS LOCAL FORWARD   -3.7672  0.71995
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33690  1.33800  1.25294  1.66437
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_tenc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:14:06 2012
NSEQ  40
EFFN  3.530273
CKSUM 467818289
STATS LOCAL MSV       -7.5640  0.71931
STATS LOCAL VITERBI   -7.7188  0.71931
STATS LOCAL FORWARD   -4.4311  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.32237  1.45329  1.27317  1.51525
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  0.00000        *
      1   2.61303  2.95298  0.25551  2.30275      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
      2   2.44058  2.33281  0.33394  2.30489      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
      3   2.65822  2.42613  2.22125  0.31051      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
      4   2.91618  2.09568  2.97112  0.25925      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
      5   2.99181  3.65250  0.11032  3.56399      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
      6   0.13370  3.44448  2.84348  3.35230      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
      7   3.50695  0.12174  3.55321  2.88245      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
      8   3.50695  0.12174  3.55321  2.88245      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
      9   3.15391  2.63661  3.19955  0.16850      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     10   3.50695  0.12174  3.55321  2.88245     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     11   2.99181  3.65250  0.11032  3.56399     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     12   2.99181  3.65250  0.11032  3.56399     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     13   0.13370  3.44448  2.84348  3.35230     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     14   3.15391  2.63661  3.19955  0.16850     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     15   3.50695  0.12174  3.55321  2.88245     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     16   0.13370  3.44448  2.84348  3.35230     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     17   2.99181  3.65250  0.11032  3.56399     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     18   2.36092  3.32322  0.18704  3.21335     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     19   3.15391  2.63661  3.19955  0.16850     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     20   0.13370  3.44448  2.84348  3.35230     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     21   2.99181  3.65250  0.11032  3.56399     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     22   2.99181  3.65250  0.11032  3.56399     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     23   2.34723  3.31471  0.18943  3.20429     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     24   0.13370  3.44448  2.84348  3.35230     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     25   3.15391  2.63661  3.19955  0.16850     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     26   0.13370  3.44448  2.84348  3.35230     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     27   3.50695  0.12174  3.55321  2.88245     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     28   3.50695  0.12174  3.55321  2.88245     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     29   3.50695  0.12174  3.55321  2.88245     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     30   2.99181  3.65250  0.11032  3.56399     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     31   3.50695  0.12174  3.55321  2.88245     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     32   3.15391  2.63661  3.19955  0.16850     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     33   2.99181  3.65250  0.11032  3.56399     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     34   0.13370  3.44448  2.84348  3.35230     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     35   0.13370  3.44448  2.84348  3.35230     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     36   3.50695  0.12174  3.55321  2.88245     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     37   3.15391  2.63661  3.19955  0.16850     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     38   3.15391  2.63661  3.19955  0.16850     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     39   0.13370  3.44448  2.84348  3.35230     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     40   0.13370  3.44448  2.84348  3.35230     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     41   2.99181  3.65250  0.11032  3.56399     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     42   3.50695  0.12174  3.55321  2.88245     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     43   0.13370  3.44448  2.84348  3.35230     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     44   3.15391  2.63661  3.19955  0.16850     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
     45   0.13370  3.44448  2.84348  3.35230     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01792  4.03074        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_tend_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:14:17 2012
NSEQ  2
EFFN  2.000000
CKSUM 1093890755
STATS LOCAL MSV       -7.6566  0.72767
STATS LOCAL VITERBI   -8.0882  0.72767
STATS LOCAL FORWARD   -3.7441  0.72767
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28646  1.40926  1.31540  1.55560
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_thirteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:15:42 2012
NSEQ  4
EFFN  3.261719
CKSUM 176532526
STATS LOCAL MSV       -7.9592  0.71933
STATS LOCAL VITERBI   -7.7561  0.71933
STATS LOCAL FORWARD   -3.8855  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27518  1.32049  1.37718  1.60284
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  0.00000        *
      1   2.58317  1.56516  2.64901  0.43899      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      2   0.14453  3.36055  2.78910  3.26035      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      3   2.93372  3.56771  0.11938  3.47031      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      4   3.41037  0.13295  3.46079  2.81242      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      5   2.93372  3.56771  0.11938  3.47031      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      6   0.14453  3.36055  2.78910  3.26035      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      7   3.41037  0.13295  3.46079  2.81242      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      8   3.41037  0.13295  3.46079  2.81242      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
      9   3.41037  0.13295  3.46079  2.81242      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     10   3.41037  0.13295  3.46079  2.81242     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     11   0.14453  3.36055  2.78910  3.26035     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     12   0.14453  3.36055  2.78910  3.26035     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     13   2.93372  3.56771  0.11938  3.47031     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     14   3.06875  2.58250  3.11766  0.18191     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     15   3.41037  0.13295  3.46079  2.81242     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     16   0.14453  3.36055  2.78910  3.26035     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     17   2.93372  3.56771  0.11938  3.47031     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     18   2.93372  3.56771  0.11938  3.47031     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     19   3.06875  2.58250  3.11766  0.18191     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     20   2.93372  3.56771  0.11938  3.47031     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     21   2.93372  3.56771  0.11938  3.47031     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     22   2.93372  3.56771  0.11938  3.47031     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     23   0.14453  3.36055  2.78910  3.26035     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     24   3.06875  2.58250  3.11766  0.18191     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     25   3.06875  2.58250  3.11766  0.18191     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     26   0.14453  3.36055  2.78910  3.26035     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     27   3.41037  0.13295  3.46079  2.81242     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     28   3.41037  0.13295  3.46079  2.81242     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     29   3.41037  0.13295  3.46079  2.81242     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     30   2.93372  3.56771  0.11938  3.47031     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     31   3.41037  0.13295  3.46079  2.81242     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     32   3.06875  2.58250  3.11766  0.18191     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     33   2.93372  3.56771  0.11938  3.47031     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     34   0.14453  3.36055  2.78910  3.26035     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     35   0.14453  3.36055  2.78910  3.26035     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     36   3.41037  0.13295  3.46079  2.81242     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     37   3.06875  2.58250  3.11766  0.18191     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     38   3.06875  2.58250  3.11766  0.18191     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     39   0.14453  3.36055  2.78910  3.26035     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     40   0.14453  3.36055  2.78910  3.26035     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     41   2.93372  3.56771  0.11938  3.47031     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     42   3.41037  0.13295  3.46079  2.81242     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     43   0.14453  3.36055  2.78910  3.26035     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     44   3.06875  2.58250  3.11766  0.18191     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
     45   0.14453  3.36055  2.78910  3.26035     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01883  3.98187        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_thirtyfive_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:23:58 2012
NSEQ  2
EFFN  2.000000
CKSUM 2544106313
STATS LOCAL MSV       -7.5247  0.72735
STATS LOCAL VITERBI   -8.3438  0.72735
STATS LOCAL FORWARD   -3.2438  0.72735
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34271  1.30420  1.26361  1.68825
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_thirtyfoura_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:23:28 2012
NSEQ  7
EFFN  3.250488
CKSUM 2395428810
STATS LOCAL MSV       -8.1586  0.71933
STATS LOCAL VITERBI   -7.6661  0.71933
STATS LOCAL FORWARD   -4.0423  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.54794  1.23507  1.18567  1.65570
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  0.00000        *
      1   3.06506  2.58015  3.11411  0.18252      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      2   2.21303  0.60736  1.52252  2.05820      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      3   2.93114  3.56396  0.11980  3.46618      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      4   3.40613  0.13347  3.45673  2.80932      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      5   2.93114  3.56396  0.11980  3.46618      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      6   0.14502  3.35687  2.78670  3.25633      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      7   3.40613  0.13347  3.45673  2.80932      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      8   3.40613  0.13347  3.45673  2.80932      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      9   3.06506  2.58015  3.11411  0.18252      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     10   3.40613  0.13347  3.45673  2.80932     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     11   0.14502  3.35687  2.78670  3.25633     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     12   2.93114  3.56396  0.11980  3.46618     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     13   2.93114  3.56396  0.11980  3.46618     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     14   3.06506  2.58015  3.11411  0.18252     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     15   3.40613  0.13347  3.45673  2.80932     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     16   0.14502  3.35687  2.78670  3.25633     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     17   2.93114  3.56396  0.11980  3.46618     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     18   2.93114  3.56396  0.11980  3.46618     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     19   3.40613  0.13347  3.45673  2.80932     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     20   2.93114  3.56396  0.11980  3.46618     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     21   2.93114  3.56396  0.11980  3.46618     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     22   2.93114  3.56396  0.11980  3.46618     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     23   2.93114  3.56396  0.11980  3.46618     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     24   3.40613  0.13347  3.45673  2.80932     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     25   3.40613  0.13347  3.45673  2.80932     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     26   0.14502  3.35687  2.78670  3.25633     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     27   3.40613  0.13347  3.45673  2.80932     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     28   3.40613  0.13347  3.45673  2.80932     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     29   3.40613  0.13347  3.45673  2.80932     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     30   2.93114  3.56396  0.11980  3.46618     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     31   3.40613  0.13347  3.45673  2.80932     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     32   3.06506  2.58015  3.11411  0.18252     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     33   2.93114  3.56396  0.11980  3.46618     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     34   0.14502  3.35687  2.78670  3.25633     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     35   2.93114  3.56396  0.11980  3.46618     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     36   3.06506  2.58015  3.11411  0.18252     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     37   3.06506  2.58015  3.11411  0.18252     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     38   3.06506  2.58015  3.11411  0.18252     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     39   0.14502  3.35687  2.78670  3.25633     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     40   0.14502  3.35687  2.78670  3.25633     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     41   2.93114  3.56396  0.11980  3.46618     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     42   3.40613  0.13347  3.45673  2.80932     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     43   0.14502  3.35687  2.78670  3.25633     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     44   3.06506  2.58015  3.11411  0.18252     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     45   0.14502  3.35687  2.78670  3.25633     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01887  3.97977        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_thirtyfourb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:23:36 2012
NSEQ  10
EFFN  3.217773
CKSUM 2888107526
STATS LOCAL MSV       -8.1436  0.71933
STATS LOCAL VITERBI   -7.6932  0.71933
STATS LOCAL FORWARD   -3.8472  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47619  1.20006  1.25414  1.68743
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  0.00000        *
      1   2.51261  1.43333  2.58054  0.50303      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
      2   3.39368  0.13501  3.44479  2.80020      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
      3   2.92353  3.55295  0.12104  3.45404      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
      4   3.39368  0.13501  3.44479  2.80020      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
      5   2.92353  3.55295  0.12104  3.45404      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
      6   0.14649  3.34608  2.77966  3.24453      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
      7   3.39368  0.13501  3.44479  2.80020      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
      8   3.39368  0.13501  3.44479  2.80020      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
      9   3.39368  0.13501  3.44479  2.80020      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     10   3.39368  0.13501  3.44479  2.80020     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     11   0.14649  3.34608  2.77966  3.24453     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     12   2.92353  3.55295  0.12104  3.45404     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     13   2.92353  3.55295  0.12104  3.45404     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     14   3.05424  2.57325  3.10370  0.18432     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     15   3.39368  0.13501  3.44479  2.80020     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     16   0.14649  3.34608  2.77966  3.24453     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     17   2.92353  3.55295  0.12104  3.45404     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     18   2.92353  3.55295  0.12104  3.45404     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     19   3.39368  0.13501  3.44479  2.80020     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     20   2.92353  3.55295  0.12104  3.45404     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     21   2.92353  3.55295  0.12104  3.45404     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     22   2.92353  3.55295  0.12104  3.45404     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     23   0.14649  3.34608  2.77966  3.24453     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     24   3.39368  0.13501  3.44479  2.80020     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     25   3.05424  2.57325  3.10370  0.18432     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     26   0.14649  3.34608  2.77966  3.24453     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     27   3.39368  0.13501  3.44479  2.80020     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     28   3.39368  0.13501  3.44479  2.80020     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     29   3.39368  0.13501  3.44479  2.80020     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     30   2.92353  3.55295  0.12104  3.45404     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     31   3.39368  0.13501  3.44479  2.80020     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     32   3.05424  2.57325  3.10370  0.18432     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     33   2.92353  3.55295  0.12104  3.45404     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     34   0.14649  3.34608  2.77966  3.24453     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     35   2.92353  3.55295  0.12104  3.45404     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     36   3.05424  2.57325  3.10370  0.18432     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     37   3.05424  2.57325  3.10370  0.18432     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     38   3.05424  2.57325  3.10370  0.18432     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     39   0.14649  3.34608  2.77966  3.24453     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     40   0.14649  3.34608  2.77966  3.24453     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     41   2.92353  3.55295  0.12104  3.45404     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     42   3.39368  0.13501  3.44479  2.80020     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     43   0.14649  3.34608  2.77966  3.24453     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     44   3.05424  2.57325  3.10370  0.18432     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
     45   0.14649  3.34608  2.77966  3.24453     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01898  3.97364        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_thirtyfourc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:23:43 2012
NSEQ  3
EFFN  3.000000
CKSUM 1235313167
STATS LOCAL MSV       -8.2340  0.71993
STATS LOCAL VITERBI   -7.8814  0.71993
STATS LOCAL FORWARD   -3.8652  0.71993
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40427  1.27422  1.25518  1.66189
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:11:10 2012
NSEQ  4
EFFN  3.214844
CKSUM 1201835928
STATS LOCAL MSV       -8.1712  0.71933
STATS LOCAL VITERBI   -7.7626  0.71933
STATS LOCAL FORWARD   -3.7793  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47744  1.32559  1.31730  1.43432
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  0.00000        *
      1   3.05326  2.57263  3.10276  0.18448      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      2   3.05326  2.57263  3.10276  0.18448      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      3   2.92285  3.55196  0.12115  3.45295      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      4   3.39256  0.13515  3.44371  2.79938      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      5   3.05326  2.57263  3.10276  0.18448      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      6   0.14663  3.34511  2.77903  3.24347      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      7   3.39256  0.13515  3.44371  2.79938      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      8   3.39256  0.13515  3.44371  2.79938      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      9   3.39256  0.13515  3.44371  2.79938      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     10   3.39256  0.13515  3.44371  2.79938     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     11   0.14663  3.34511  2.77903  3.24347     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     12   2.92285  3.55196  0.12115  3.45295     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     13   2.92285  3.55196  0.12115  3.45295     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     14   3.05326  2.57263  3.10276  0.18448     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     15   3.39256  0.13515  3.44371  2.79938     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     16   0.14663  3.34511  2.77903  3.24347     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     17   2.92285  3.55196  0.12115  3.45295     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     18   2.92285  3.55196  0.12115  3.45295     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     19   3.05326  2.57263  3.10276  0.18448     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     20   2.92285  3.55196  0.12115  3.45295     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     21   2.92285  3.55196  0.12115  3.45295     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     22   2.92285  3.55196  0.12115  3.45295     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     23   0.14663  3.34511  2.77903  3.24347     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     24   3.39256  0.13515  3.44371  2.79938     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     25   3.05326  2.57263  3.10276  0.18448     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     26   0.14663  3.34511  2.77903  3.24347     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     27   3.39256  0.13515  3.44371  2.79938     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     28   3.39256  0.13515  3.44371  2.79938     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     29   3.39256  0.13515  3.44371  2.79938     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     30   2.92285  3.55196  0.12115  3.45295     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     31   3.39256  0.13515  3.44371  2.79938     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     32   3.05326  2.57263  3.10276  0.18448     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     33   2.92285  3.55196  0.12115  3.45295     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     34   0.14663  3.34511  2.77903  3.24347     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     35   2.92285  3.55196  0.12115  3.45295     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     36   3.05326  2.57263  3.10276  0.18448     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     37   3.05326  2.57263  3.10276  0.18448     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     38   3.05326  2.57263  3.10276  0.18448     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     39   0.14663  3.34511  2.77903  3.24347     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     40   0.14663  3.34511  2.77903  3.24347     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     41   2.92285  3.55196  0.12115  3.45295     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     42   3.39256  0.13515  3.44371  2.79938     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     43   0.14663  3.34511  2.77903  3.24347     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     44   3.05326  2.57263  3.10276  0.18448     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     45   0.14663  3.34511  2.77903  3.24347     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01899  3.97309        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_twelve_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:15:29 2012
NSEQ  2
EFFN  2.000000
CKSUM 1666626583
STATS LOCAL MSV       -7.6335  0.72740
STATS LOCAL VITERBI   -8.2106  0.72740
STATS LOCAL FORWARD   -3.2591  0.72740
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.52257  1.35418  1.16326  1.55483
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_twenty_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:21:12 2012
NSEQ  3
EFFN  3.000000
CKSUM 458537765
STATS LOCAL MSV       -8.1436  0.72004
STATS LOCAL VITERBI   -7.6198  0.72004
STATS LOCAL FORWARD   -4.1137  0.72004
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40407  1.27131  1.31647  1.58055
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   0.15719  3.27118  2.73043  3.16274      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   0.15719  3.27118  2.73043  3.16274     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   3.30705  0.14631  3.36166  2.73626     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.97980  2.52563  3.03204  0.19727     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   0.15719  3.27118  2.73043  3.16274     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   3.30705  0.14631  3.36166  2.73626     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.86982  3.47591  0.13017  3.36931     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   0.15719  3.27118  2.73043  3.16274     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.97980  2.52563  3.03204  0.19727     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   0.15719  3.27118  2.73043  3.16274     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   0.15719  3.27118  2.73043  3.16274     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   3.30705  0.14631  3.36166  2.73626     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.97980  2.52563  3.03204  0.19727     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_twentyeight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:23:03 2012
NSEQ  4
EFFN  3.097656
CKSUM 2353773636
STATS LOCAL MSV       -8.2199  0.71933
STATS LOCAL VITERBI   -7.8312  0.71933
STATS LOCAL FORWARD   -3.6832  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40516  1.22130  1.19741  1.84611
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  0.00000        *
      1   0.15219  3.30544  2.75304  3.20013      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
      2   3.01370  2.54736  3.06469  0.19124      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
      3   2.89459  3.51128  0.12588  3.40817      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
      4   3.34671  0.14101  3.39974  2.76565      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
      5   2.89459  3.51128  0.12588  3.40817      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
      6   0.15219  3.30544  2.75304  3.20013      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
      7   3.34671  0.14101  3.39974  2.76565      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
      8   3.34671  0.14101  3.39974  2.76565      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
      9   3.34671  0.14101  3.39974  2.76565      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     10   3.34671  0.14101  3.39974  2.76565     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     11   0.15219  3.30544  2.75304  3.20013     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     12   2.89459  3.51128  0.12588  3.40817     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     13   2.89459  3.51128  0.12588  3.40817     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     14   0.15219  3.30544  2.75304  3.20013     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     15   3.01370  2.54736  3.06469  0.19124     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     16   2.89459  3.51128  0.12588  3.40817     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     17   2.89459  3.51128  0.12588  3.40817     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     18   2.89459  3.51128  0.12588  3.40817     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     19   3.34671  0.14101  3.39974  2.76565     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     20   2.89459  3.51128  0.12588  3.40817     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     21   0.15219  3.30544  2.75304  3.20013     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     22   2.89459  3.51128  0.12588  3.40817     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     23   2.89459  3.51128  0.12588  3.40817     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     24   3.34671  0.14101  3.39974  2.76565     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     25   3.34671  0.14101  3.39974  2.76565     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     26   0.15219  3.30544  2.75304  3.20013     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     27   3.34671  0.14101  3.39974  2.76565     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     28   3.34671  0.14101  3.39974  2.76565     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     29   3.34671  0.14101  3.39974  2.76565     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     30   2.89459  3.51128  0.12588  3.40817     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     31   3.34671  0.14101  3.39974  2.76565     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     32   3.34671  0.14101  3.39974  2.76565     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     33   2.89459  3.51128  0.12588  3.40817     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     34   0.15219  3.30544  2.75304  3.20013     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     35   2.89459  3.51128  0.12588  3.40817     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     36   3.01370  2.54736  3.06469  0.19124     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     37   3.01370  2.54736  3.06469  0.19124     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     38   3.01370  2.54736  3.06469  0.19124     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     39   0.15219  3.30544  2.75304  3.20013     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     40   0.15219  3.30544  2.75304  3.20013     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     41   2.89459  3.51128  0.12588  3.40817     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     42   3.34671  0.14101  3.39974  2.76565     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     43   0.15219  3.30544  2.75304  3.20013     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     44   3.01370  2.54736  3.06469  0.19124     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
     45   0.15219  3.30544  2.75304  3.20013     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01943  3.95079        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_twentyfive_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:22:33 2012
NSEQ  6
EFFN  3.284180
CKSUM 3558168622
STATS LOCAL MSV       -8.0853  0.71933
STATS LOCAL VITERBI   -7.5841  0.71933
STATS LOCAL FORWARD   -3.7451  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28014  1.32058  1.61205  1.36437
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  0.00000        *
      1   3.07610  2.58718  3.12474  0.18071      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
      2   3.07610  2.58718  3.12474  0.18071      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
      3   3.07610  2.58718  3.12474  0.18071      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
      4   3.07610  2.58718  3.12474  0.18071      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
      5   2.93885  3.57515  0.11855  3.47852      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
      6   0.14354  3.36786  2.79386  3.26835      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
      7   3.41881  0.13193  3.46887  2.81857      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
      8   3.41881  0.13193  3.46887  2.81857      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
      9   3.07610  2.58718  3.12474  0.18071      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     10   3.41881  0.13193  3.46887  2.81857     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     11   0.14354  3.36786  2.79386  3.26835     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     12   2.93885  3.57515  0.11855  3.47852     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     13   3.07610  2.58718  3.12474  0.18071     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     14   3.07610  2.58718  3.12474  0.18071     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     15   3.41881  0.13193  3.46887  2.81857     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     16   0.14354  3.36786  2.79386  3.26835     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     17   2.93885  3.57515  0.11855  3.47852     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     18   0.14354  3.36786  2.79386  3.26835     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     19   3.41881  0.13193  3.46887  2.81857     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     20   0.14354  3.36786  2.79386  3.26835     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     21   0.14354  3.36786  2.79386  3.26835     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     22   2.93885  3.57515  0.11855  3.47852     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     23   2.93885  3.57515  0.11855  3.47852     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     24   3.41881  0.13193  3.46887  2.81857     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     25   3.07610  2.58718  3.12474  0.18071     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     26   0.14354  3.36786  2.79386  3.26835     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     27   3.41881  0.13193  3.46887  2.81857     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     28   3.41881  0.13193  3.46887  2.81857     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     29   3.41881  0.13193  3.46887  2.81857     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     30   2.93885  3.57515  0.11855  3.47852     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     31   3.41881  0.13193  3.46887  2.81857     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     32   3.41881  0.13193  3.46887  2.81857     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     33   2.93885  3.57515  0.11855  3.47852     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     34   0.14354  3.36786  2.79386  3.26835     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     35   0.14354  3.36786  2.79386  3.26835     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     36   3.07610  2.58718  3.12474  0.18071     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     37   3.07610  2.58718  3.12474  0.18071     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     38   3.07610  2.58718  3.12474  0.18071     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     39   0.14354  3.36786  2.79386  3.26835     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     40   0.14354  3.36786  2.79386  3.26835     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     41   2.93885  3.57515  0.11855  3.47852     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     42   3.41881  0.13193  3.46887  2.81857     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     43   0.14354  3.36786  2.79386  3.26835     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     44   3.07610  2.58718  3.12474  0.18071     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     45   0.14354  3.36786  2.79386  3.26835     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01875  3.98605        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_twentyfour_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:22:20 2012
NSEQ  2
EFFN  2.000000
CKSUM 585099399
STATS LOCAL MSV       -7.5304  0.72797
STATS LOCAL VITERBI   -8.2378  0.72797
STATS LOCAL FORWARD   -3.2800  0.72797
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34335  1.39907  1.37294  1.43195
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   0.23862  2.84929  2.43386  2.70756     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.57915  2.25909  2.64442  0.28946     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_twentynine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:23:14 2012
NSEQ  2
EFFN  2.000000
CKSUM 948472287
STATS LOCAL MSV       -7.5165  0.72789
STATS LOCAL VITERBI   -8.3237  0.72789
STATS LOCAL FORWARD   -3.1789  0.72789
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.31998  1.30160  1.25870  1.73307
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   0.23862  2.84929  2.43386  2.70756     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.53331  3.02441  0.20344  2.88069     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   1.03732  1.95876  1.96551  1.00928     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_twentyseven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:22:53 2012
NSEQ  2
EFFN  2.000000
CKSUM 3585155037
STATS LOCAL MSV       -7.6411  0.72790
STATS LOCAL VITERBI   -8.1958  0.72790
STATS LOCAL FORWARD   -3.1897  0.72790
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.43267  1.24706  1.24508  1.68167
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.92825  2.28391  0.95698  2.13014     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_twentysix_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:22:44 2012
NSEQ  7
EFFN  3.216309
CKSUM 3292637804
STATS LOCAL MSV       -8.0713  0.71932
STATS LOCAL VITERBI   -7.7834  0.71932
STATS LOCAL FORWARD   -4.0416  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.16267  1.39809  1.44531  1.58666
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  0.00000        *
      1   0.14656  3.34560  2.77935  3.24400      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
      2   2.92319  3.55246  0.12110  3.45350      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
      3   3.39312  0.13508  3.44425  2.79979      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
      4   0.14656  3.34560  2.77935  3.24400      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
      5   2.92319  3.55246  0.12110  3.45350      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
      6   0.14656  3.34560  2.77935  3.24400      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
      7   3.39312  0.13508  3.44425  2.79979      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
      8   3.39312  0.13508  3.44425  2.79979      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
      9   3.05375  2.57294  3.10323  0.18440      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     10   3.39312  0.13508  3.44425  2.79979     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     11   3.05375  2.57294  3.10323  0.18440     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     12   2.92319  3.55246  0.12110  3.45350     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     13   0.14656  3.34560  2.77935  3.24400     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     14   3.05375  2.57294  3.10323  0.18440     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     15   3.39312  0.13508  3.44425  2.79979     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     16   0.14656  3.34560  2.77935  3.24400     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     17   2.92319  3.55246  0.12110  3.45350     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     18   2.92319  3.55246  0.12110  3.45350     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     19   0.14656  3.34560  2.77935  3.24400     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     20   0.14656  3.34560  2.77935  3.24400     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     21   0.14656  3.34560  2.77935  3.24400     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     22   2.92319  3.55246  0.12110  3.45350     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     23   0.14656  3.34560  2.77935  3.24400     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     24   3.39312  0.13508  3.44425  2.79979     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     25   3.05375  2.57294  3.10323  0.18440     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     26   0.14656  3.34560  2.77935  3.24400     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     27   3.39312  0.13508  3.44425  2.79979     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     28   3.39312  0.13508  3.44425  2.79979     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     29   3.39312  0.13508  3.44425  2.79979     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     30   2.92319  3.55246  0.12110  3.45350     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     31   3.39312  0.13508  3.44425  2.79979     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     32   3.05375  2.57294  3.10323  0.18440     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     33   2.92319  3.55246  0.12110  3.45350     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     34   0.14656  3.34560  2.77935  3.24400     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     35   2.92319  3.55246  0.12110  3.45350     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     36   3.05375  2.57294  3.10323  0.18440     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     37   3.05375  2.57294  3.10323  0.18440     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     38   3.05375  2.57294  3.10323  0.18440     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     39   0.14656  3.34560  2.77935  3.24400     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     40   0.14656  3.34560  2.77935  3.24400     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     41   2.92319  3.55246  0.12110  3.45350     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     42   3.39312  0.13508  3.44425  2.79979     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     43   0.14656  3.34560  2.77935  3.24400     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     44   3.05375  2.57294  3.10323  0.18440     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     45   0.14656  3.34560  2.77935  3.24400     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01899  3.97336        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_twentythree_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:21:38 2012
NSEQ  5
EFFN  3.139648
CKSUM 4105697300
STATS LOCAL MSV       -8.2688  0.71933
STATS LOCAL VITERBI   -7.5622  0.71933
STATS LOCAL FORWARD   -4.0037  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40230  1.33627  1.19527  1.66852
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  0.00000        *
      1   0.15014  3.31984  2.76249  3.21585      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
      2   3.36335  0.13885  3.41571  2.77793      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
      3   2.90489  3.52608  0.12414  3.42445      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
      4   0.15014  3.31984  2.76249  3.21585      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
      5   2.90489  3.52608  0.12414  3.42445      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
      6   0.15014  3.31984  2.76249  3.21585      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
      7   3.36335  0.13885  3.41571  2.77793      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
      8   3.36335  0.13885  3.41571  2.77793      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
      9   3.02802  2.55652  3.07847  0.18876      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     10   3.36335  0.13885  3.41571  2.77793     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     11   0.15014  3.31984  2.76249  3.21585     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     12   2.90489  3.52608  0.12414  3.42445     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     13   2.90489  3.52608  0.12414  3.42445     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     14   3.02802  2.55652  3.07847  0.18876     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     15   3.36335  0.13885  3.41571  2.77793     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     16   0.15014  3.31984  2.76249  3.21585     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     17   2.90489  3.52608  0.12414  3.42445     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     18   2.90489  3.52608  0.12414  3.42445     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     19   3.36335  0.13885  3.41571  2.77793     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     20   2.90489  3.52608  0.12414  3.42445     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     21   2.90489  3.52608  0.12414  3.42445     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     22   2.90489  3.52608  0.12414  3.42445     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     23   2.90489  3.52608  0.12414  3.42445     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     24   3.36335  0.13885  3.41571  2.77793     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     25   3.02802  2.55652  3.07847  0.18876     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     26   0.15014  3.31984  2.76249  3.21585     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     27   3.36335  0.13885  3.41571  2.77793     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     28   3.36335  0.13885  3.41571  2.77793     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     29   3.36335  0.13885  3.41571  2.77793     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     30   2.90489  3.52608  0.12414  3.42445     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     31   3.36335  0.13885  3.41571  2.77793     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     32   3.02802  2.55652  3.07847  0.18876     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     33   2.90489  3.52608  0.12414  3.42445     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     34   0.15014  3.31984  2.76249  3.21585     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     35   2.90489  3.52608  0.12414  3.42445     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     36   3.02802  2.55652  3.07847  0.18876     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     37   3.02802  2.55652  3.07847  0.18876     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     38   3.02802  2.55652  3.07847  0.18876     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     39   0.15014  3.31984  2.76249  3.21585     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     40   0.15014  3.31984  2.76249  3.21585     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     41   2.90489  3.52608  0.12414  3.42445     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     42   3.36335  0.13885  3.41571  2.77793     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     43   0.15014  3.31984  2.76249  3.21585     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     44   3.02802  2.55652  3.07847  0.18876     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     45   0.15014  3.31984  2.76249  3.21585     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01927  3.95884        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_twentytwo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:21:30 2012
NSEQ  416
EFFN  3.373779
CKSUM 2904155972
STATS LOCAL MSV       -7.7211  0.71932
STATS LOCAL VITERBI   -7.7573  0.71932
STATS LOCAL FORWARD   -3.6591  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47008  1.14522  1.31744  1.69217
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  0.00000        *
      1   3.34205  0.14440  3.28352  2.78709      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
      2   3.39278  0.14047  3.44316  2.72615      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
      3   2.81506  3.53865  0.12892  3.44198      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
      4   3.38510  0.14215  3.43572  2.71163      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
      5   2.83375  3.54759  0.12702  3.45142      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
      6   0.13977  3.39648  2.81245  3.29969      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
      7   3.45179  0.12800  3.50045  2.84258      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
      8   3.45179  0.12800  3.50045  2.84258      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
      9   3.45179  0.12800  3.50045  2.84258      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     10   3.31724  0.15759  3.37000  2.58813     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     11   0.13977  3.39648  2.81245  3.29969     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     12   2.95881  3.60419  0.11538  3.51057     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     13   2.95881  3.60419  0.11538  3.51057     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     14   3.10501  2.60557  3.15254  0.17606     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     15   3.20439  0.14712  3.37927  2.77820     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     16   0.13977  3.39648  2.81245  3.29969     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     17   2.95881  3.60419  0.11538  3.51057     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     18   2.55105  2.36340  2.08619  0.35134     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     19   3.45179  0.12800  3.50045  2.84258     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     20   2.76420  3.51369  0.13430  3.41557     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     21   2.95881  3.60419  0.11538  3.51057     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     22   2.95881  3.60419  0.11538  3.51057     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     23   0.13977  3.39648  2.81245  3.29969     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     24   3.45179  0.12800  3.50045  2.84258     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     25   2.63795  1.62383  2.70236  0.40902     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     26   0.13977  3.39648  2.81245  3.29969     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     27   3.45179  0.12800  3.50045  2.84258     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     28   3.45179  0.12800  3.50045  2.84258     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     29   3.45179  0.12800  3.50045  2.84258     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     30   2.95881  3.60419  0.11538  3.51057     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     31   3.45179  0.12800  3.50045  2.84258     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     32   3.10501  2.60557  3.15254  0.17606     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     33   2.83237  3.47661  0.13647  3.27592     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     34   0.13977  3.39648  2.81245  3.29969     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     35   2.59736  3.42566  0.15441  3.32199     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     36   3.10501  2.60557  3.15254  0.17606     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     37   3.10501  2.60557  3.15254  0.17606     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     38   3.10501  2.60557  3.15254  0.17606     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     39   0.13977  3.39648  2.81245  3.29969     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     40   0.13977  3.39648  2.81245  3.29969     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     41   2.95881  3.60419  0.11538  3.51057     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     42   3.45179  0.12800  3.50045  2.84258     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     43   0.13977  3.39648  2.81245  3.29969     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     44   3.10501  2.60557  3.15254  0.17606     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
     45   0.13977  3.39648  2.81245  3.29969     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01844  4.00255        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Tracheophyta_4_LSU_start_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 00:11:02 2012
NSEQ  88
EFFN  3.730225
CKSUM 289705699
STATS LOCAL MSV       -7.0698  0.71932
STATS LOCAL VITERBI   -7.7391  0.71932
STATS LOCAL FORWARD   -3.8541  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47805  1.22403  1.23030  1.68378
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  0.00000        *
      1   1.27419  1.16179  2.07688  1.26551      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
      2   2.28831  0.85829  2.43975  0.94806      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
      3   3.03087  3.71007  0.10461  3.62777      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
      4   3.57309  0.11469  3.61641  2.92985      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
      5   3.03087  3.71007  0.10461  3.62777      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
      6   0.12678  3.50230  2.88068  3.41576      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
      7   3.57309  0.11469  3.61641  2.92985      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
      8   3.57309  0.11469  3.61641  2.92985      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
      9   3.57309  0.11469  3.61641  2.92985      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     10   3.57309  0.11469  3.61641  2.92985     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     11   0.12678  3.50230  2.88068  3.41576     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     12   3.03087  3.71007  0.10461  3.62777     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     13   3.03087  3.71007  0.10461  3.62777     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     14   3.21354  2.67441  3.25685  0.15978     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     15   3.48081  0.13319  3.52743  2.74053     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     16   0.12678  3.50230  2.88068  3.41576     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     17   3.03087  3.71007  0.10461  3.62777     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     18   2.59203  3.50425  0.14857  3.40749     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     19   3.48923  0.13143  3.53554  2.75682     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     20   2.86666  3.64130  0.11844  3.55481     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     21   3.03087  3.71007  0.10461  3.62777     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     22   3.03087  3.71007  0.10461  3.62777     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     23   0.65536  2.61447  1.12942  2.47315     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     24   3.11117  0.23074  3.17034  2.12428     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     25   3.13072  2.46267  3.17737  0.18704     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     26   0.12678  3.50230  2.88068  3.41576     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     27   3.57309  0.11469  3.61641  2.92985     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     28   3.57309  0.11469  3.61641  2.92985     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     29   3.57309  0.11469  3.61641  2.92985     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     30   3.03087  3.71007  0.10461  3.62777     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     31   3.57309  0.11469  3.61641  2.92985     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     32   3.21354  2.67441  3.25685  0.15978     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     33   3.03087  3.71007  0.10461  3.62777     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     34   0.12678  3.50230  2.88068  3.41576     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     35   2.52711  3.46798  0.15725  3.36850     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     36   3.21354  2.67441  3.25685  0.15978     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     37   3.21354  2.67441  3.25685  0.15978     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     38   3.21354  2.67441  3.25685  0.15978     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     39   0.12678  3.50230  2.88068  3.41576     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     40   0.12678  3.50230  2.88068  3.41576     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     41   3.03087  3.71007  0.10461  3.62777     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     42   3.57309  0.11469  3.61641  2.92985     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     43   0.12678  3.50230  2.88068  3.41576     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     44   3.21354  2.67441  3.25685  0.15978     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
     45   0.12678  3.50230  2.88068  3.41576     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01730  4.06564        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Tracheophyta_1_SSU_end_five_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Thu Feb 16 22:45:55 2012
NSEQ  2465
EFFN  3.455687
CKSUM 1242947486
STATS LOCAL MSV       -7.7138  0.71931
STATS LOCAL VITERBI   -7.6652  0.71931
STATS LOCAL FORWARD   -4.0912  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.32651  1.63232  1.19484  1.44236
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  0.00000        *
      1   0.13651  3.42193  2.82892  3.32757      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
      2   2.87155  3.58379  0.12201  3.49072      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
      3   3.13087  2.62199  3.17740  0.17201      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
      4   3.34613  0.14711  3.30399  2.73574      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
      5   2.74125  3.52096  0.13541  3.42407      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
      6   3.13087  2.62199  3.17740  0.17201      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
      7   0.13651  3.42193  2.82892  3.32757      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
      8   0.14488  3.38910  2.74880  3.29341      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03618  4.03525  4.02567  1.46634  0.26236  1.09861  0.40547
      9   3.48072  0.12467  3.52813  2.86353      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03508  4.03508  1.46634  0.26236  1.09223  0.40867
     10   0.13651  3.42193  2.82892  3.32757     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     11   0.13651  3.42193  2.82892  3.32757     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     12   2.97637  3.62986  0.11266  3.53894     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     13   2.97637  3.62986  0.11266  3.53894     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.03525  4.01630  1.46634  0.26236  1.09861  0.40547
     14   3.13027  2.62161  3.17682  0.17211     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03602  4.03492  4.03492  1.46634  0.26236  1.08601  0.41182
     15   3.05631  2.43793  3.10554  0.19748     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     16   2.95149  2.59145  3.10049  0.18898     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03654  4.03525  4.00658  1.46634  0.26236  1.09861  0.40547
     17   3.32248  0.15921  3.37495  2.56524     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03602  4.03474  4.03474  1.46634  0.26236  1.07959  0.41511
     18   3.37735  0.14191  3.35769  2.75915     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     19   2.83503  3.44657  0.13154  3.42087     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     20   3.09420  2.52888  3.14200  0.18423     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     21   0.13651  3.42193  2.82892  3.32757     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     22   2.97637  3.62986  0.11266  3.53894     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     23   2.87064  3.53577  0.12816  3.36711     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     24   3.04630  2.59008  2.98834  0.18985     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     25   2.93777  3.43823  0.12432  3.44838     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04076  4.03525  3.80511  1.46634  0.26236  1.09861  0.40547
     26   0.13752  3.41397  2.82377  3.31885     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03617  4.03067  4.03067  1.46634  0.26236  0.95121  0.48820
     27   0.15869  3.24292  2.74030  3.14323     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.03525  3.98862  1.46634  0.26236  1.09861  0.40547
     28   3.47937  0.12482  3.52685  2.86256     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03603  4.03441  4.03441  1.46634  0.26236  1.06776  0.42125
     29   3.42591  0.13605  3.47498  2.75322     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     30   3.13087  2.62199  3.17740  0.17201     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     31   2.88935  3.59189  0.12034  3.49926     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     32   3.38192  0.14107  3.36424  2.76456     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     33   2.72561  3.35497  0.14585  3.34395     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04050  4.03525  3.81647  1.46634  0.26236  1.09861  0.40547
     34   2.73371  3.51155  0.13667  3.41384     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  4.03092  3.94736  1.46634  0.26236  0.96596  0.47903
     35   0.13689  3.41896  2.82700  3.32431     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03607  4.03354  4.03354  1.46634  0.26236  1.03799  0.43722
     36   0.16310  3.32144  2.59676  3.22186     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     37   2.97637  3.62986  0.11266  3.53894     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     38   2.88935  3.59189  0.12034  3.49926     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     39   0.13651  3.42193  2.82892  3.32757     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     40   3.13087  2.62199  3.17740  0.17201     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     41   3.28730  0.13857  3.43663  2.81560     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     42   0.14508  3.38831  2.74693  3.29259     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     43   3.13087  2.62199  3.17740  0.17201     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     44   3.10129  2.54646  3.14883  0.18182     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
     45   2.62394  3.31301  0.16145  3.21467     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01816  4.01742        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Tracheophyta_1_SSU_end_four_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Thu Feb 16 22:45:45 2012
NSEQ  3
EFFN  3.000000
CKSUM 1668200381
STATS LOCAL MSV       -8.0335  0.72044
STATS LOCAL VITERBI   -7.6660  0.72044
STATS LOCAL FORWARD   -4.1391  0.72044
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27287  1.70168  1.30718  1.32045
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.97980  2.52563  3.03204  0.19727      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   0.15719  3.27118  2.73043  3.16274      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   0.15719  3.27118  2.73043  3.16274      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   0.15719  3.27118  2.73043  3.16274     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   0.15719  3.27118  2.73043  3.16274     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.97980  2.52563  3.03204  0.19727     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   0.15719  3.27118  2.73043  3.16274     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.86982  3.47591  0.13017  3.36931     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.86982  3.47591  0.13017  3.36931     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Tracheophyta_1_SSU_end_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Thu Feb 16 22:45:21 2012
NSEQ  2
EFFN  2.000000
CKSUM 3520144163
STATS LOCAL MSV       -7.4050  0.72803
STATS LOCAL VITERBI   -8.4014  0.72803
STATS LOCAL FORWARD   -3.3486  0.72803
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.23215  1.67157  1.30831  1.38588
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   0.23862  2.84929  2.43386  2.70756      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   0.23862  2.84929  2.43386  2.70756     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.53331  3.02441  0.20344  2.88069     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Tracheophyta_1_SSU_end_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Thu Feb 16 22:45:36 2012
NSEQ  4
EFFN  3.269531
CKSUM 1893084359
STATS LOCAL MSV       -8.0441  0.71933
STATS LOCAL VITERBI   -7.6633  0.71933
STATS LOCAL FORWARD   -4.3760  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34926  1.54473  1.18124  1.51276
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  0.00000        *
      1   0.14418  3.36310  2.79076  3.26314      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      2   2.93551  3.57031  0.11909  3.47317      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      3   3.07131  2.58413  3.12013  0.18149      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      4   3.41331  0.13259  3.46361  2.81457      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      5   2.93551  3.57031  0.11909  3.47317      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      6   3.07131  2.58413  3.12013  0.18149      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      7   0.14418  3.36310  2.79076  3.26314      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      8   0.14418  3.36310  2.79076  3.26314      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      9   3.41331  0.13259  3.46361  2.81457      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     10   0.14418  3.36310  2.79076  3.26314     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     11   0.14418  3.36310  2.79076  3.26314     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     12   2.93551  3.57031  0.11909  3.47317     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     13   2.93551  3.57031  0.11909  3.47317     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     14   3.07131  2.58413  3.12013  0.18149     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     15   3.41331  0.13259  3.46361  2.81457     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     16   3.07131  2.58413  3.12013  0.18149     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     17   3.41331  0.13259  3.46361  2.81457     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     18   3.41331  0.13259  3.46361  2.81457     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     19   2.93551  3.57031  0.11909  3.47317     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     20   3.07131  2.58413  3.12013  0.18149     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     21   3.07131  2.58413  3.12013  0.18149     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     22   2.93551  3.57031  0.11909  3.47317     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     23   2.93551  3.57031  0.11909  3.47317     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     24   3.07131  2.58413  3.12013  0.18149     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     25   2.93551  3.57031  0.11909  3.47317     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     26   0.14418  3.36310  2.79076  3.26314     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     27   0.14418  3.36310  2.79076  3.26314     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     28   3.41331  0.13259  3.46361  2.81457     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     29   3.41331  0.13259  3.46361  2.81457     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     30   0.40008  2.74926  1.64707  2.61530     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     31   2.93551  3.57031  0.11909  3.47317     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     32   3.41331  0.13259  3.46361  2.81457     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     33   2.93551  3.57031  0.11909  3.47317     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     34   2.93551  3.57031  0.11909  3.47317     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     35   0.14418  3.36310  2.79076  3.26314     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     36   2.93551  3.57031  0.11909  3.47317     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     37   2.93551  3.57031  0.11909  3.47317     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     38   2.93551  3.57031  0.11909  3.47317     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     39   0.14418  3.36310  2.79076  3.26314     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     40   3.07131  2.58413  3.12013  0.18149     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     41   3.41331  0.13259  3.46361  2.81457     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     42   0.14418  3.36310  2.79076  3.26314     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     43   3.07131  2.58413  3.12013  0.18149     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     44   3.07131  2.58413  3.12013  0.18149     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     45   0.14418  3.36310  2.79076  3.26314     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01880  3.98333        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Tracheophyta_1_SSU_end_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Thu Feb 16 22:45:28 2012
NSEQ  2
EFFN  2.000000
CKSUM 3574096921
STATS LOCAL MSV       -7.4187  0.72775
STATS LOCAL VITERBI   -8.3649  0.72775
STATS LOCAL FORWARD   -3.4400  0.72775
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.51814  1.52829  1.15981  1.38459
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   0.23862  2.84929  2.43386  2.70756     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.53331  3.02441  0.20344  2.88069     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//