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view ITSx_db/HMMs/B.hmm @ 0:f82c70f54bd7 draft
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| author | okorol |
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| date | Tue, 24 Mar 2015 12:02:48 -0400 |
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HMMER3/b [3.0 | March 2010] NAME 3_End_Bryophyta_58S_end_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:55:01 2012 NSEQ 32 EFFN 3.136719 CKSUM 2659440974 STATS LOCAL MSV -8.2375 0.71932 STATS LOCAL VITERBI -7.5917 0.71932 STATS LOCAL FORWARD -3.9020 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72251 1.15807 1.14566 1.66454 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 0.00000 * 1 3.02702 2.55588 3.07751 0.18893 1 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 2 2.90418 3.52505 0.12426 3.42332 2 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 3 3.36220 0.13900 3.41461 2.77708 3 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 4 2.90418 3.52505 0.12426 3.42332 4 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 5 3.36220 0.13900 3.41461 2.77708 5 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 6 3.36220 0.13900 3.41461 2.77708 6 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 7 3.36220 0.13900 3.41461 2.77708 7 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 8 2.90418 3.52505 0.12426 3.42332 8 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 9 0.15028 3.31884 2.76184 3.21476 9 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 10 2.90418 3.52505 0.12426 3.42332 10 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 11 2.90418 3.52505 0.12426 3.42332 11 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 12 3.36220 0.13900 3.41461 2.77708 12 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 13 3.02702 2.55588 3.07751 0.18893 13 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 14 3.36220 0.13900 3.41461 2.77708 14 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 15 2.90418 3.52505 0.12426 3.42332 15 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 16 0.15028 3.31884 2.76184 3.21476 16 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 17 3.36220 0.13900 3.41461 2.77708 17 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 18 3.36220 0.13900 3.41461 2.77708 18 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 19 2.90418 3.52505 0.12426 3.42332 19 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 20 0.15028 3.31884 2.76184 3.21476 20 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 21 2.90418 3.52505 0.12426 3.42332 21 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 22 2.90418 3.52505 0.12426 3.42332 22 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 23 2.90418 3.52505 0.12426 3.42332 23 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 24 3.36220 0.13900 3.41461 2.77708 24 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 25 0.15028 3.31884 2.76184 3.21476 25 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 26 3.02702 2.55588 3.07751 0.18893 26 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 27 3.02702 2.55588 3.07751 0.18893 27 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 28 3.02702 2.55588 3.07751 0.18893 28 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 29 3.36220 0.13900 3.41461 2.77708 29 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 30 3.36220 0.13900 3.41461 2.77708 30 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 31 2.90418 3.52505 0.12426 3.42332 31 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 32 2.54419 2.45655 2.84459 0.25157 32 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 33 3.02702 2.55588 3.07751 0.18893 33 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 34 0.15028 3.31884 2.76184 3.21476 34 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 35 2.90418 3.52505 0.12426 3.42332 35 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 36 0.15028 3.31884 2.76184 3.21476 36 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 37 2.90418 3.52505 0.12426 3.42332 37 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 38 3.36220 0.13900 3.41461 2.77708 38 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 39 2.90418 3.52505 0.12426 3.42332 39 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 40 3.02702 2.55588 3.07751 0.18893 40 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 41 3.36220 0.13900 3.41461 2.77708 41 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 42 0.15028 3.31884 2.76184 3.21476 42 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 43 3.36220 0.13900 3.41461 2.77708 43 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 44 3.36220 0.13900 3.41461 2.77708 44 - - 1.38629 1.38629 1.38629 1.38629 0.03820 3.97720 3.97720 1.46634 0.26236 1.09861 0.40547 45 2.90418 3.52505 0.12426 3.42332 45 - - 1.38629 1.38629 1.38629 1.38629 0.01928 3.95828 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bryophyta_58S_end_onea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:52:57 2012 NSEQ 763 EFFN 3.146374 CKSUM 3906571075 STATS LOCAL MSV -8.0133 0.71932 STATS LOCAL VITERBI -7.7300 0.71932 STATS LOCAL FORWARD -3.9523 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72681 1.15592 1.20168 1.57653 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 0.00000 * 1 3.03029 2.55797 3.08065 0.18837 1 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 2 2.90652 3.52842 0.12386 3.42702 2 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 3 3.36599 0.13851 3.41824 2.77987 3 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 4 2.90652 3.52842 0.12386 3.42702 4 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 5 3.36599 0.13851 3.41824 2.77987 5 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 6 3.36599 0.13851 3.41824 2.77987 6 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 7 3.31429 0.15005 3.36782 2.68075 7 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 8 2.90652 3.52842 0.12386 3.42702 8 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 9 0.14982 3.32211 2.76398 3.21834 9 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 10 2.90652 3.52842 0.12386 3.42702 10 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 11 2.90652 3.52842 0.12386 3.42702 11 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 12 3.36599 0.13851 3.41824 2.77987 12 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 13 3.03029 2.55797 3.08065 0.18837 13 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 14 3.03029 2.55797 3.08065 0.18837 14 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 15 2.90652 3.52842 0.12386 3.42702 15 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 16 3.03029 2.55797 3.08065 0.18837 16 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 17 3.36599 0.13851 3.41824 2.77987 17 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 18 3.36599 0.13851 3.41824 2.77987 18 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 19 0.14982 3.32211 2.76398 3.21834 19 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 20 0.14982 3.32211 2.76398 3.21834 20 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 21 2.90652 3.52842 0.12386 3.42702 21 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 22 2.90652 3.52842 0.12386 3.42702 22 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 23 2.90652 3.52842 0.12386 3.42702 23 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 24 3.36599 0.13851 3.41824 2.77987 24 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 25 0.14982 3.32211 2.76398 3.21834 25 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 26 3.03029 2.55797 3.08065 0.18837 26 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 27 3.03029 2.55797 3.08065 0.18837 27 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 28 3.03029 2.55797 3.08065 0.18837 28 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 29 3.36599 0.13851 3.41824 2.77987 29 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 30 3.36599 0.13851 3.41824 2.77987 30 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 31 2.90652 3.52842 0.12386 3.42702 31 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 32 3.36599 0.13851 3.41824 2.77987 32 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 33 3.03029 2.55797 3.08065 0.18837 33 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 34 0.14982 3.32211 2.76398 3.21834 34 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 35 2.90652 3.52842 0.12386 3.42702 35 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 36 0.14982 3.32211 2.76398 3.21834 36 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 37 2.90652 3.52842 0.12386 3.42702 37 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 38 3.36599 0.13851 3.41824 2.77987 38 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 39 2.90652 3.52842 0.12386 3.42702 39 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 40 3.03029 2.55797 3.08065 0.18837 40 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 41 3.36599 0.13851 3.41824 2.77987 41 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 42 0.14982 3.32211 2.76398 3.21834 42 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 43 3.36599 0.13851 3.41824 2.77987 43 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 44 3.36599 0.13851 3.41824 2.77987 44 - - 1.38629 1.38629 1.38629 1.38629 0.03813 3.97900 3.97900 1.46634 0.26236 1.09861 0.40547 45 2.90652 3.52842 0.12386 3.42702 45 - - 1.38629 1.38629 1.38629 1.38629 0.01924 3.96012 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bryophyta_58S_end_oneb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:53:07 2012 NSEQ 4 EFFN 3.128906 CKSUM 917505709 STATS LOCAL MSV -8.0379 0.71931 STATS LOCAL VITERBI -7.8725 0.71931 STATS LOCAL FORWARD -3.8063 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.63717 1.15833 1.20077 1.65811 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 0.00000 * 1 3.02437 2.55419 3.07496 0.18939 1 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 2 2.90228 3.52232 0.12458 3.42031 2 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 3 3.35912 0.13939 3.41165 2.77481 3 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 4 2.90228 3.52232 0.12458 3.42031 4 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 5 3.35912 0.13939 3.41165 2.77481 5 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 6 3.35912 0.13939 3.41165 2.77481 6 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 7 3.35912 0.13939 3.41165 2.77481 7 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 8 2.90228 3.52232 0.12458 3.42031 8 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 9 0.15066 3.31617 2.76009 3.21184 9 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 10 2.90228 3.52232 0.12458 3.42031 10 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 11 2.90228 3.52232 0.12458 3.42031 11 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 12 3.35912 0.13939 3.41165 2.77481 12 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 13 3.02437 2.55419 3.07496 0.18939 13 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 14 3.02437 2.55419 3.07496 0.18939 14 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 15 2.90228 3.52232 0.12458 3.42031 15 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 16 0.15066 3.31617 2.76009 3.21184 16 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 17 3.35912 0.13939 3.41165 2.77481 17 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 18 3.35912 0.13939 3.41165 2.77481 18 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 19 0.15066 3.31617 2.76009 3.21184 19 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 20 0.15066 3.31617 2.76009 3.21184 20 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 21 2.90228 3.52232 0.12458 3.42031 21 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 22 2.90228 3.52232 0.12458 3.42031 22 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 23 2.90228 3.52232 0.12458 3.42031 23 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 24 3.35912 0.13939 3.41165 2.77481 24 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 25 0.15066 3.31617 2.76009 3.21184 25 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 26 3.02437 2.55419 3.07496 0.18939 26 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 27 3.02437 2.55419 3.07496 0.18939 27 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 28 3.02437 2.55419 3.07496 0.18939 28 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 29 3.35912 0.13939 3.41165 2.77481 29 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 30 3.02437 2.55419 3.07496 0.18939 30 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 31 2.90228 3.52232 0.12458 3.42031 31 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 32 3.35912 0.13939 3.41165 2.77481 32 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 33 3.35912 0.13939 3.41165 2.77481 33 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 34 0.15066 3.31617 2.76009 3.21184 34 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 35 2.90228 3.52232 0.12458 3.42031 35 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 36 0.15066 3.31617 2.76009 3.21184 36 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 37 2.90228 3.52232 0.12458 3.42031 37 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 38 3.35912 0.13939 3.41165 2.77481 38 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 39 2.90228 3.52232 0.12458 3.42031 39 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 40 3.02437 2.55419 3.07496 0.18939 40 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 41 3.35912 0.13939 3.41165 2.77481 41 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 42 0.15066 3.31617 2.76009 3.21184 42 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 43 3.35912 0.13939 3.41165 2.77481 43 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 44 3.35912 0.13939 3.41165 2.77481 44 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 45 2.90228 3.52232 0.12458 3.42031 45 - - 1.38629 1.38629 1.38629 1.38629 0.01931 3.95679 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bryophyta_58S_end_onec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:53:43 2012 NSEQ 2 EFFN 2.000000 CKSUM 2795560661 STATS LOCAL MSV -7.3318 0.72746 STATS LOCAL VITERBI -8.3092 0.72746 STATS LOCAL FORWARD -3.2447 0.72746 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.66863 1.19517 1.21903 1.54495 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.53331 3.02441 0.20344 2.88069 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23862 2.84929 2.43386 2.70756 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.57915 2.25909 2.64442 0.28946 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bryophyta_58S_end_oned_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:53:52 2012 NSEQ 14 EFFN 3.106934 CKSUM 2932514730 STATS LOCAL MSV -8.1189 0.71931 STATS LOCAL VITERBI -7.8598 0.71931 STATS LOCAL FORWARD -3.6138 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.63809 1.10855 1.20186 1.74310 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 0.00000 * 1 3.01688 2.54940 3.06775 0.19069 1 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 2 2.89688 3.51457 0.12549 3.41179 2 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 3 3.35041 0.14052 3.40329 2.76839 3 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 4 2.89688 3.51457 0.12549 3.41179 4 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 5 3.35041 0.14052 3.40329 2.76839 5 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 6 3.35041 0.14052 3.40329 2.76839 6 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 7 3.35041 0.14052 3.40329 2.76839 7 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 8 2.89688 3.51457 0.12549 3.41179 8 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 9 0.15173 3.30864 2.75514 3.20362 9 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 10 2.89688 3.51457 0.12549 3.41179 10 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 11 2.89688 3.51457 0.12549 3.41179 11 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 12 3.35041 0.14052 3.40329 2.76839 12 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 13 3.01688 2.54940 3.06775 0.19069 13 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 14 3.01688 2.54940 3.06775 0.19069 14 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 15 2.89688 3.51457 0.12549 3.41179 15 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 16 0.15173 3.30864 2.75514 3.20362 16 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 17 3.35041 0.14052 3.40329 2.76839 17 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 18 3.35041 0.14052 3.40329 2.76839 18 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 19 0.15173 3.30864 2.75514 3.20362 19 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 20 0.15173 3.30864 2.75514 3.20362 20 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 21 2.89688 3.51457 0.12549 3.41179 21 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 22 2.89688 3.51457 0.12549 3.41179 22 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 23 2.89688 3.51457 0.12549 3.41179 23 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 24 3.35041 0.14052 3.40329 2.76839 24 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 25 0.15173 3.30864 2.75514 3.20362 25 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 26 3.01688 2.54940 3.06775 0.19069 26 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 27 3.35041 0.14052 3.40329 2.76839 27 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 28 3.01688 2.54940 3.06775 0.19069 28 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 29 3.35041 0.14052 3.40329 2.76839 29 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 30 3.01688 2.54940 3.06775 0.19069 30 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 31 2.89688 3.51457 0.12549 3.41179 31 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 32 3.35041 0.14052 3.40329 2.76839 32 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 33 3.35041 0.14052 3.40329 2.76839 33 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 34 0.15173 3.30864 2.75514 3.20362 34 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 35 2.89688 3.51457 0.12549 3.41179 35 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 36 0.15173 3.30864 2.75514 3.20362 36 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 37 2.89688 3.51457 0.12549 3.41179 37 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 38 3.35041 0.14052 3.40329 2.76839 38 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 39 2.89688 3.51457 0.12549 3.41179 39 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 40 3.01688 2.54940 3.06775 0.19069 40 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 41 3.35041 0.14052 3.40329 2.76839 41 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 42 0.15173 3.30864 2.75514 3.20362 42 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 43 3.35041 0.14052 3.40329 2.76839 43 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 44 3.35041 0.14052 3.40329 2.76839 44 - - 1.38629 1.38629 1.38629 1.38629 0.03842 3.97160 3.97160 1.46634 0.26236 1.09861 0.40547 45 2.89688 3.51457 0.12549 3.41179 45 - - 1.38629 1.38629 1.38629 1.38629 0.01939 3.95258 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bryophyta_58S_end_onee_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:53:59 2012 NSEQ 3 EFFN 3.000000 CKSUM 2130174180 STATS LOCAL MSV -8.0947 0.71979 STATS LOCAL VITERBI -7.8867 0.71979 STATS LOCAL FORWARD -3.8117 0.71979 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72110 1.16173 1.14816 1.65566 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.97980 2.52563 3.03204 0.19727 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.86982 3.47591 0.13017 3.36931 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 3.30705 0.14631 3.36166 2.73626 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.86982 3.47591 0.13017 3.36931 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 0.15719 3.27118 2.73043 3.16274 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.86982 3.47591 0.13017 3.36931 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 3.30705 0.14631 3.36166 2.73626 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.97980 2.52563 3.03204 0.19727 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.15719 3.27118 2.73043 3.16274 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.30705 0.14631 3.36166 2.73626 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.97980 2.52563 3.03204 0.19727 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.97980 2.52563 3.03204 0.19727 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 3.30705 0.14631 3.36166 2.73626 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.15719 3.27118 2.73043 3.16274 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.30705 0.14631 3.36166 2.73626 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.30705 0.14631 3.36166 2.73626 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.30705 0.14631 3.36166 2.73626 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.86982 3.47591 0.13017 3.36931 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bryophyta_58S_end_onef_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:54:06 2012 NSEQ 3 EFFN 3.000000 CKSUM 4221773349 STATS LOCAL MSV -8.1256 0.72011 STATS LOCAL VITERBI -7.8157 0.72011 STATS LOCAL FORWARD -3.5545 0.72011 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.69977 1.10910 1.16851 1.73393 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.97980 2.52563 3.03204 0.19727 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.86982 3.47591 0.13017 3.36931 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 3.30705 0.14631 3.36166 2.73626 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.86982 3.47591 0.13017 3.36931 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 0.15719 3.27118 2.73043 3.16274 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.86982 3.47591 0.13017 3.36931 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 3.30705 0.14631 3.36166 2.73626 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.97980 2.52563 3.03204 0.19727 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.15719 3.27118 2.73043 3.16274 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.30705 0.14631 3.36166 2.73626 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 1.34853 2.58976 0.54705 2.44542 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.97980 2.52563 3.03204 0.19727 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 3.30705 0.14631 3.36166 2.73626 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.15719 3.27118 2.73043 3.16274 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.30705 0.14631 3.36166 2.73626 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.30705 0.14631 3.36166 2.73626 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.30705 0.14631 3.36166 2.73626 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.86982 3.47591 0.13017 3.36931 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bryophyta_58S_end_oneg_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:54:15 2012 NSEQ 2 EFFN 2.000000 CKSUM 3511530240 STATS LOCAL MSV -7.5261 0.72724 STATS LOCAL VITERBI -8.3284 0.72724 STATS LOCAL FORWARD -3.2798 0.72724 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.59726 1.15373 1.21894 1.67906 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.53331 3.02441 0.20344 2.88069 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23862 2.84929 2.43386 2.70756 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bryophyta_58S_end_oneh_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:54:21 2012 NSEQ 424 EFFN 3.179871 CKSUM 2931873354 STATS LOCAL MSV -8.1249 0.71932 STATS LOCAL VITERBI -7.7146 0.71932 STATS LOCAL FORWARD -3.9901 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.82243 1.15677 1.14939 1.57486 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 0.00000 * 1 3.04159 2.56518 3.09153 0.18645 1 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 2 2.91458 3.54002 0.12252 3.43980 2 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 3 3.37907 0.13684 3.43079 2.78949 3 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 4 2.91458 3.54002 0.12252 3.43980 4 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 5 3.37907 0.13684 3.43079 2.78949 5 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 6 3.37907 0.13684 3.43079 2.78949 6 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 7 3.37907 0.13684 3.43079 2.78949 7 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 8 2.91458 3.54002 0.12252 3.43980 8 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 9 0.14824 3.33344 2.77140 3.23071 9 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 10 2.91458 3.54002 0.12252 3.43980 10 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 11 2.91458 3.54002 0.12252 3.43980 11 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 12 3.37907 0.13684 3.43079 2.78949 12 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 13 3.04159 2.56518 3.09153 0.18645 13 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 14 3.04159 2.56518 3.09153 0.18645 14 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 15 2.91458 3.54002 0.12252 3.43980 15 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 16 3.00846 2.48394 3.05939 0.19808 16 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 17 3.37907 0.13684 3.43079 2.78949 17 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 18 3.24260 0.16848 3.29802 2.53787 18 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 19 2.62119 3.26368 0.17495 3.00507 19 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 20 0.14824 3.33344 2.77140 3.23071 20 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 21 2.91458 3.54002 0.12252 3.43980 21 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 22 2.91458 3.54002 0.12252 3.43980 22 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 23 2.91458 3.54002 0.12252 3.43980 23 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 24 3.37907 0.13684 3.43079 2.78949 24 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 25 0.14824 3.33344 2.77140 3.23071 25 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 26 3.04159 2.56518 3.09153 0.18645 26 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 27 3.04159 2.56518 3.09153 0.18645 27 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 28 3.04159 2.56518 3.09153 0.18645 28 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 29 3.37907 0.13684 3.43079 2.78949 29 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 30 3.37907 0.13684 3.43079 2.78949 30 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 31 2.91458 3.54002 0.12252 3.43980 31 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 32 3.29792 0.15507 3.35176 2.63575 32 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 33 3.04159 2.56518 3.09153 0.18645 33 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 34 0.14824 3.33344 2.77140 3.23071 34 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 35 2.91458 3.54002 0.12252 3.43980 35 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 36 0.14824 3.33344 2.77140 3.23071 36 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 37 2.91458 3.54002 0.12252 3.43980 37 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 38 3.37907 0.13684 3.43079 2.78949 38 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 39 2.91458 3.54002 0.12252 3.43980 39 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 40 3.04159 2.56518 3.09153 0.18645 40 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 41 3.37907 0.13684 3.43079 2.78949 41 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 42 0.14824 3.33344 2.77140 3.23071 42 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 43 3.37907 0.13684 3.43079 2.78949 43 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 44 3.37907 0.13684 3.43079 2.78949 44 - - 1.38629 1.38629 1.38629 1.38629 0.03788 3.98525 3.98525 1.46634 0.26236 1.09861 0.40547 45 2.91458 3.54002 0.12252 3.43980 45 - - 1.38629 1.38629 1.38629 1.38629 0.01912 3.96649 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bryophyta_58S_end_threea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:54:43 2012 NSEQ 21 EFFN 3.124878 CKSUM 2929418065 STATS LOCAL MSV -8.2559 0.71933 STATS LOCAL VITERBI -7.8263 0.71933 STATS LOCAL FORWARD -3.7613 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.93119 1.10249 1.09529 1.66847 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 0.00000 * 1 2.90129 3.52090 0.12475 3.41875 1 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 2 3.35753 0.13960 3.41012 2.77364 2 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 3 2.90129 3.52090 0.12475 3.41875 3 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 4 3.35753 0.13960 3.41012 2.77364 4 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 5 3.35753 0.13960 3.41012 2.77364 5 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 6 3.35753 0.13960 3.41012 2.77364 6 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 7 2.90129 3.52090 0.12475 3.41875 7 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 8 0.15086 3.31480 2.75918 3.21034 8 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 9 2.90129 3.52090 0.12475 3.41875 9 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 10 2.90129 3.52090 0.12475 3.41875 10 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 11 3.35753 0.13960 3.41012 2.77364 11 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 12 3.02300 2.55331 3.07364 0.18963 12 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 13 3.02300 2.55331 3.07364 0.18963 13 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 14 2.90129 3.52090 0.12475 3.41875 14 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 15 3.02300 2.55331 3.07364 0.18963 15 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 16 3.35753 0.13960 3.41012 2.77364 16 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 17 3.35753 0.13960 3.41012 2.77364 17 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 18 3.35753 0.13960 3.41012 2.77364 18 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 19 2.90129 3.52090 0.12475 3.41875 19 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 20 0.15086 3.31480 2.75918 3.21034 20 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 21 2.90129 3.52090 0.12475 3.41875 21 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 22 2.90129 3.52090 0.12475 3.41875 22 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 23 2.90129 3.52090 0.12475 3.41875 23 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 24 3.35753 0.13960 3.41012 2.77364 24 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 25 0.15086 3.31480 2.75918 3.21034 25 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 26 3.02300 2.55331 3.07364 0.18963 26 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 27 2.90129 3.52090 0.12475 3.41875 27 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 28 2.79267 2.04724 2.85116 0.28519 28 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 29 3.35753 0.13960 3.41012 2.77364 29 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 30 3.02300 2.55331 3.07364 0.18963 30 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 31 2.90129 3.52090 0.12475 3.41875 31 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 32 3.35753 0.13960 3.41012 2.77364 32 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 33 3.35753 0.13960 3.41012 2.77364 33 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 34 3.02300 2.55331 3.07364 0.18963 34 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 35 2.90129 3.52090 0.12475 3.41875 35 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 36 0.15086 3.31480 2.75918 3.21034 36 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 37 2.90129 3.52090 0.12475 3.41875 37 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 38 3.35753 0.13960 3.41012 2.77364 38 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 39 2.90129 3.52090 0.12475 3.41875 39 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 40 3.02300 2.55331 3.07364 0.18963 40 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 41 3.35753 0.13960 3.41012 2.77364 41 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 42 0.15086 3.31480 2.75918 3.21034 42 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 43 3.35753 0.13960 3.41012 2.77364 43 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 44 3.35753 0.13960 3.41012 2.77364 44 - - 1.38629 1.38629 1.38629 1.38629 0.03828 3.97497 3.97497 1.46634 0.26236 1.09861 0.40547 45 2.90129 3.52090 0.12475 3.41875 45 - - 1.38629 1.38629 1.38629 1.38629 0.01932 3.95602 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bryophyta_58S_end_threeb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:54:50 2012 NSEQ 2 EFFN 2.000000 CKSUM 2625608571 STATS LOCAL MSV -7.6293 0.72737 STATS LOCAL VITERBI -8.2377 0.72737 STATS LOCAL FORWARD -3.4980 0.72737 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.74692 1.19578 1.17082 1.54594 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.53331 3.02441 0.20344 2.88069 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23862 2.84929 2.43386 2.70756 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.57915 2.25909 2.64442 0.28946 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bryophyta_58S_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:54:32 2012 NSEQ 3 EFFN 3.000000 CKSUM 4268316376 STATS LOCAL MSV -7.9410 0.71971 STATS LOCAL VITERBI -7.7402 0.71971 STATS LOCAL FORWARD -3.8312 0.71971 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.54913 1.27857 1.09139 1.75224 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.86982 3.47591 0.13017 3.36931 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.86982 3.47591 0.13017 3.36931 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 3.30705 0.14631 3.36166 2.73626 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.86982 3.47591 0.13017 3.36931 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.15719 3.27118 2.73043 3.16274 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 0.15719 3.27118 2.73043 3.16274 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.30705 0.14631 3.36166 2.73626 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.86982 3.47591 0.13017 3.36931 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 0.15719 3.27118 2.73043 3.16274 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 0.15719 3.27118 2.73043 3.16274 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.97980 2.52563 3.03204 0.19727 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.97980 2.52563 3.03204 0.19727 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 3.30705 0.14631 3.36166 2.73626 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.97980 2.52563 3.03204 0.19727 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.97980 2.52563 3.03204 0.19727 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.86982 3.47591 0.13017 3.36931 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 3.30705 0.14631 3.36166 2.73626 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.15719 3.27118 2.73043 3.16274 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.30705 0.14631 3.36166 2.73626 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.30705 0.14631 3.36166 2.73626 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.30705 0.14631 3.36166 2.73626 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.86982 3.47591 0.13017 3.36931 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Bryophyta_58S_start_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:20:53 2012 NSEQ 566 EFFN 3.320724 CKSUM 3711830997 STATS LOCAL MSV -8.0550 0.71933 STATS LOCAL VITERBI -7.5860 0.71933 STATS LOCAL FORWARD -3.9938 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.21886 1.31922 1.52638 1.51518 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 0.00000 * 1 3.43239 0.13029 3.48188 2.82847 1 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 2 0.15265 3.33865 2.70501 3.23873 2 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 3 0.14198 3.37964 2.80152 3.28124 3 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 4 3.43239 0.13029 3.48188 2.82847 4 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 5 3.08798 2.59474 3.13616 0.17878 5 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 6 3.43239 0.13029 3.48188 2.82847 6 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 7 3.08798 2.59474 3.13616 0.17878 7 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 8 3.43239 0.13029 3.48188 2.82847 8 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 9 0.15265 3.33865 2.70501 3.23873 9 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 10 2.83675 3.53683 0.12761 3.43933 10 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 11 3.43239 0.13029 3.48188 2.82847 11 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 12 0.14198 3.37964 2.80152 3.28124 12 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 13 0.14198 3.37964 2.80152 3.28124 13 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 14 3.32823 0.14604 3.27780 2.77564 14 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 15 2.94709 3.58712 0.11723 3.49173 15 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 16 2.94709 3.58712 0.11723 3.49173 16 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 17 0.14198 3.37964 2.80152 3.28124 17 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 18 3.08798 2.59474 3.13616 0.17878 18 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 19 0.14198 3.37964 2.80152 3.28124 19 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 20 3.08798 2.59474 3.13616 0.17878 20 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 21 3.43239 0.13029 3.48188 2.82847 21 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 22 3.08798 2.59474 3.13616 0.17878 22 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 23 3.08798 2.59474 3.13616 0.17878 23 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 24 2.94709 3.58712 0.11723 3.49173 24 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 25 2.94709 3.58712 0.11723 3.49173 25 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 26 3.43239 0.13029 3.48188 2.82847 26 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 27 3.08798 2.59474 3.13616 0.17878 27 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 28 3.43239 0.13029 3.48188 2.82847 28 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 29 2.88428 2.13441 2.93989 0.25758 29 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 30 2.95689 2.28766 3.00975 0.22663 30 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 31 2.94709 3.58712 0.11723 3.49173 31 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 32 3.43239 0.13029 3.48188 2.82847 32 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 33 0.14198 3.37964 2.80152 3.28124 33 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 34 0.16245 3.26709 2.75306 3.03462 34 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 35 3.43239 0.13029 3.48188 2.82847 35 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 36 2.94709 3.58712 0.11723 3.49173 36 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 37 0.14198 3.37964 2.80152 3.28124 37 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 38 3.08798 2.59474 3.13616 0.17878 38 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 39 2.94709 3.58712 0.11723 3.49173 39 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 40 0.14198 3.37964 2.80152 3.28124 40 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 41 0.14198 3.37964 2.80152 3.28124 41 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 42 2.84069 3.53870 0.12722 3.44129 42 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 43 0.14198 3.37964 2.80152 3.28124 43 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 44 0.14198 3.37964 2.80152 3.28124 44 - - 1.38629 1.38629 1.38629 1.38629 0.03690 4.01110 4.01110 1.46634 0.26236 1.09861 0.40547 45 3.43239 0.13029 3.48188 2.82847 45 - - 1.38629 1.38629 1.38629 1.38629 0.01862 3.99282 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Bryophyta_4_LSU_start_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 23:04:06 2012 NSEQ 571 EFFN 3.376198 CKSUM 15171129 STATS LOCAL MSV -7.6849 0.71932 STATS LOCAL VITERBI -7.6602 0.71932 STATS LOCAL FORWARD -3.8754 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.10949 1.39565 1.60122 1.50982 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 0.00000 * 1 0.13967 3.39725 2.81295 3.30053 1 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 2 2.90725 2.33387 2.85709 0.23443 2 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 3 3.45267 0.12790 3.50130 2.84322 3 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 4 0.13967 3.39725 2.81295 3.30053 4 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 5 2.95934 3.60496 0.11529 3.51143 5 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 6 0.13967 3.39725 2.81295 3.30053 6 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 7 3.45267 0.12790 3.50130 2.84322 7 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 8 3.45267 0.12790 3.50130 2.84322 8 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 9 3.10579 2.60606 3.15328 0.17593 9 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 10 2.93647 0.19916 2.90193 2.62260 10 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 11 3.10579 2.60606 3.15328 0.17593 11 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 12 0.16927 3.28718 2.56424 3.18495 12 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 13 0.13967 3.39725 2.81295 3.30053 13 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 14 3.10579 2.60606 3.15328 0.17593 14 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 15 3.45267 0.12790 3.50130 2.84322 15 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 16 2.69287 3.47774 0.14237 3.37743 16 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 17 2.95934 3.60496 0.11529 3.51143 17 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 18 0.18562 3.23206 2.45277 3.12631 18 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 19 0.13967 3.39725 2.81295 3.30053 19 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 20 0.13967 3.39725 2.81295 3.30053 20 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 21 0.13967 3.39725 2.81295 3.30053 21 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 22 2.95934 3.60496 0.11529 3.51143 22 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 23 0.13967 3.39725 2.81295 3.30053 23 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 24 3.38216 0.14287 3.43286 2.70503 24 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 25 3.07320 2.52400 3.12178 0.18692 25 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 26 0.13967 3.39725 2.81295 3.30053 26 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 27 3.45267 0.12790 3.50130 2.84322 27 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 28 3.45267 0.12790 3.50130 2.84322 28 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 29 3.45267 0.12790 3.50130 2.84322 29 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 30 2.95934 3.60496 0.11529 3.51143 30 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 31 3.45267 0.12790 3.50130 2.84322 31 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 32 3.10579 2.60606 3.15328 0.17593 32 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 33 2.95934 3.60496 0.11529 3.51143 33 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 34 0.13967 3.39725 2.81295 3.30053 34 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 35 2.95934 3.60496 0.11529 3.51143 35 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 36 3.10579 2.60606 3.15328 0.17593 36 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 37 3.10579 2.60606 3.15328 0.17593 37 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 38 3.10579 2.60606 3.15328 0.17593 38 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 39 0.13967 3.39725 2.81295 3.30053 39 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 40 0.13967 3.39725 2.81295 3.30053 40 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 41 2.95934 3.60496 0.11529 3.51143 41 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 42 3.45267 0.12790 3.50130 2.84322 42 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 43 0.13967 3.39725 2.81295 3.30053 43 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 44 3.10579 2.60606 3.15328 0.17593 44 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02109 4.02109 1.46634 0.26236 1.09861 0.40547 45 0.13967 3.39725 2.81295 3.30053 45 - - 1.38629 1.38629 1.38629 1.38629 0.01843 4.00300 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Bryophyta_1_SSU_end_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:17:01 2012 NSEQ 104 EFFN 3.361084 CKSUM 3707920726 STATS LOCAL MSV -8.0254 0.71932 STATS LOCAL VITERBI -7.6516 0.71932 STATS LOCAL FORWARD -4.1129 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.32957 1.63353 1.18639 1.44882 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 0.00000 * 1 0.16956 3.28379 2.56472 3.18126 1 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 2 2.60252 3.17954 0.19430 2.79852 2 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 3 2.59843 2.38615 2.17412 0.32862 3 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 4 3.09028 0.21945 3.14994 2.21922 4 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 5 2.95603 3.60014 0.11581 3.50610 5 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 6 3.10096 2.60299 3.14864 0.17670 6 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 7 0.14029 3.39248 2.80985 3.29530 7 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 8 0.14029 3.39248 2.80985 3.29530 8 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 9 3.44718 0.12854 3.49604 2.83923 9 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 10 0.14029 3.39248 2.80985 3.29530 10 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 11 0.14029 3.39248 2.80985 3.29530 11 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 12 2.95603 3.60014 0.11581 3.50610 12 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 13 2.95603 3.60014 0.11581 3.50610 13 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 14 3.10096 2.60299 3.14864 0.17670 14 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 15 3.10096 2.60299 3.14864 0.17670 15 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 16 3.10096 2.60299 3.14864 0.17670 16 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 17 3.44718 0.12854 3.49604 2.83923 17 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 18 3.44718 0.12854 3.49604 2.83923 18 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 19 2.95603 3.60014 0.11581 3.50610 19 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 20 3.10096 2.60299 3.14864 0.17670 20 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 21 0.14029 3.39248 2.80985 3.29530 21 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 22 2.95603 3.60014 0.11581 3.50610 22 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 23 2.95603 3.60014 0.11581 3.50610 23 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 24 3.10096 2.60299 3.14864 0.17670 24 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 25 2.95603 3.60014 0.11581 3.50610 25 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 26 0.14029 3.39248 2.80985 3.29530 26 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 27 0.14029 3.39248 2.80985 3.29530 27 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 28 3.44718 0.12854 3.49604 2.83923 28 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 29 3.44718 0.12854 3.49604 2.83923 29 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 30 3.10096 2.60299 3.14864 0.17670 30 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 31 2.95603 3.60014 0.11581 3.50610 31 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 32 3.44718 0.12854 3.49604 2.83923 32 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 33 2.95603 3.60014 0.11581 3.50610 33 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 34 2.95603 3.60014 0.11581 3.50610 34 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 35 0.14029 3.39248 2.80985 3.29530 35 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 36 0.14029 3.39248 2.80985 3.29530 36 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 37 2.95603 3.60014 0.11581 3.50610 37 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 38 2.95603 3.60014 0.11581 3.50610 38 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 39 0.14029 3.39248 2.80985 3.29530 39 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 40 3.10096 2.60299 3.14864 0.17670 40 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 41 3.44718 0.12854 3.49604 2.83923 41 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 42 0.14029 3.39248 2.80985 3.29530 42 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 43 3.10096 2.60299 3.14864 0.17670 43 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 44 3.10096 2.60299 3.14864 0.17670 44 - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.09861 0.40547 45 2.95603 3.60014 0.11581 3.50610 45 - - 1.38629 1.38629 1.38629 1.38629 0.01848 4.00023 * 1.46634 0.26236 0.00000 * //