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view ITSx_db/HMMs/E.hmm @ 0:f82c70f54bd7 draft
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| author | okorol |
|---|---|
| date | Tue, 24 Mar 2015 12:02:48 -0400 |
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HMMER3/b [3.0 | March 2010] NAME 3_End_Euglenozoa_58S_end_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 21:20:25 2012 NSEQ 5 EFFN 3.305664 CKSUM 1011588078 STATS LOCAL MSV -8.1772 0.71930 STATS LOCAL VITERBI -7.8656 0.71930 STATS LOCAL FORWARD -3.6513 0.71930 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.83104 0.97779 1.32465 1.62094 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 0.00000 * 1 3.42681 0.13096 3.47654 2.82441 1 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 2 3.42681 0.13096 3.47654 2.82441 2 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 3 3.42681 0.13096 3.47654 2.82441 3 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 4 3.42681 0.13096 3.47654 2.82441 4 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 5 2.43822 1.17704 2.50879 0.64793 5 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 6 3.42681 0.13096 3.47654 2.82441 6 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 7 2.94371 3.58221 0.11777 3.48630 7 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 8 2.94371 3.58221 0.11777 3.48630 8 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 9 2.94371 3.58221 0.11777 3.48630 9 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 10 2.94371 3.58221 0.11777 3.48630 10 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 11 2.66304 1.70497 2.72642 0.38121 11 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 12 3.42681 0.13096 3.47654 2.82441 12 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 13 0.14262 3.37480 2.79837 3.27595 13 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 14 3.08310 2.59163 3.13146 0.17957 14 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 15 3.42681 0.13096 3.47654 2.82441 15 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 16 3.42681 0.13096 3.47654 2.82441 16 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 17 3.42681 0.13096 3.47654 2.82441 17 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 18 3.42681 0.13096 3.47654 2.82441 18 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 19 2.94371 3.58221 0.11777 3.48630 19 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 20 3.08310 2.59163 3.13146 0.17957 20 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 21 2.94371 3.58221 0.11777 3.48630 21 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 22 3.42681 0.13096 3.47654 2.82441 22 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 23 0.14262 3.37480 2.79837 3.27595 23 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 24 3.08310 2.59163 3.13146 0.17957 24 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 25 2.94371 3.58221 0.11777 3.48630 25 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 26 3.42681 0.13096 3.47654 2.82441 26 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 27 3.42681 0.13096 3.47654 2.82441 27 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 28 2.94371 3.58221 0.11777 3.48630 28 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 29 3.42681 0.13096 3.47654 2.82441 29 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 30 0.14262 3.37480 2.79837 3.27595 30 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 31 2.94371 3.58221 0.11777 3.48630 31 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 32 3.08310 2.59163 3.13146 0.17957 32 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 33 3.42681 0.13096 3.47654 2.82441 33 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 34 3.08310 2.59163 3.13146 0.17957 34 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 35 3.42681 0.13096 3.47654 2.82441 35 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 36 0.14262 3.37480 2.79837 3.27595 36 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 37 2.94371 3.58221 0.11777 3.48630 37 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 38 3.08310 2.59163 3.13146 0.17957 38 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 39 2.94371 3.58221 0.11777 3.48630 39 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 40 3.08310 2.59163 3.13146 0.17957 40 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 41 3.42681 0.13096 3.47654 2.82441 41 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 42 2.94371 3.58221 0.11777 3.48630 42 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 43 0.14262 3.37480 2.79837 3.27595 43 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 44 0.14262 3.37480 2.79837 3.27595 44 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 45 3.42681 0.13096 3.47654 2.82441 45 - - 1.38629 1.38629 1.38629 1.38629 0.01867 3.99003 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Euglenozoa_58S_end_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 21:20:17 2012 NSEQ 9 EFFN 3.388184 CKSUM 4129927598 STATS LOCAL MSV -7.5680 0.71933 STATS LOCAL VITERBI -7.9086 0.71933 STATS LOCAL FORWARD -4.1297 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.73272 1.05373 1.47466 1.40362 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 0.00000 * 1 3.45700 0.12739 3.50544 2.84636 1 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 2 3.45700 0.12739 3.50544 2.84636 2 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 3 3.10960 2.60848 3.15695 0.17533 3 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 4 3.10960 2.60848 3.15695 0.17533 4 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 5 2.51380 0.59068 2.58551 1.23879 5 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 6 3.10960 2.60848 3.15695 0.17533 6 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 7 2.58534 2.38556 0.26060 2.78052 7 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 8 2.96194 3.60876 0.11489 3.51562 8 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 9 2.96194 3.60876 0.11489 3.51562 9 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 10 2.96194 3.60876 0.11489 3.51562 10 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 11 3.10960 2.60848 3.15695 0.17533 11 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 12 3.45700 0.12739 3.50544 2.84636 12 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 13 0.13919 3.40101 2.81538 3.30464 13 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 14 3.10960 2.60848 3.15695 0.17533 14 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 15 3.45700 0.12739 3.50544 2.84636 15 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 16 3.45700 0.12739 3.50544 2.84636 16 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 17 3.45700 0.12739 3.50544 2.84636 17 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 18 3.45700 0.12739 3.50544 2.84636 18 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 19 2.96194 3.60876 0.11489 3.51562 19 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 20 3.10960 2.60848 3.15695 0.17533 20 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 21 2.96194 3.60876 0.11489 3.51562 21 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 22 3.45700 0.12739 3.50544 2.84636 22 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 23 0.13919 3.40101 2.81538 3.30464 23 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 24 3.10960 2.60848 3.15695 0.17533 24 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 25 2.96194 3.60876 0.11489 3.51562 25 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 26 3.45700 0.12739 3.50544 2.84636 26 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 27 3.45700 0.12739 3.50544 2.84636 27 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 28 0.13919 3.40101 2.81538 3.30464 28 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 29 3.45700 0.12739 3.50544 2.84636 29 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 30 0.13919 3.40101 2.81538 3.30464 30 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 31 3.10960 2.60848 3.15695 0.17533 31 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 32 3.45700 0.12739 3.50544 2.84636 32 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 33 3.45700 0.12739 3.50544 2.84636 33 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 34 3.10960 2.60848 3.15695 0.17533 34 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 35 3.45700 0.12739 3.50544 2.84636 35 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 36 0.13919 3.40101 2.81538 3.30464 36 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 37 2.96194 3.60876 0.11489 3.51562 37 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 38 3.10960 2.60848 3.15695 0.17533 38 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 39 2.96194 3.60876 0.11489 3.51562 39 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 40 3.10960 2.60848 3.15695 0.17533 40 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 41 3.45700 0.12739 3.50544 2.84636 41 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 42 2.96194 3.60876 0.11489 3.51562 42 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 43 0.13919 3.40101 2.81538 3.30464 43 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 44 0.13919 3.40101 2.81538 3.30464 44 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 45 3.45700 0.12739 3.50544 2.84636 45 - - 1.38629 1.38629 1.38629 1.38629 0.01839 4.00518 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Euglenozoa_58S_end_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 21:19:53 2012 NSEQ 2 EFFN 2.000000 CKSUM 4096091460 STATS LOCAL MSV -7.5109 0.72875 STATS LOCAL VITERBI -8.2829 0.72875 STATS LOCAL FORWARD -3.4193 0.72875 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.64469 1.08655 1.50951 1.39220 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 1.03732 1.95876 1.96551 1.00928 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.81865 0.23582 2.88868 2.35662 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.23862 2.84929 2.43386 2.70756 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.23862 2.84929 2.43386 2.70756 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.57915 2.25909 2.64442 0.28946 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Euglenozoa_58S_end_seven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 21:20:40 2012 NSEQ 2 EFFN 2.000000 CKSUM 2052136868 STATS LOCAL MSV -7.3922 0.72832 STATS LOCAL VITERBI -8.2890 0.72832 STATS LOCAL FORWARD -3.4229 0.72832 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.59740 1.17878 1.51108 1.31211 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.53331 3.02441 0.20344 2.88069 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.57915 2.25909 2.64442 0.28946 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.57915 2.25909 2.64442 0.28946 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.81865 0.23582 2.88868 2.35662 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.23862 2.84929 2.43386 2.70756 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.23862 2.84929 2.43386 2.70756 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.57915 2.25909 2.64442 0.28946 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Euglenozoa_58S_end_six_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 21:20:34 2012 NSEQ 7 EFFN 3.325684 CKSUM 336432944 STATS LOCAL MSV -8.1816 0.71932 STATS LOCAL VITERBI -7.9070 0.71932 STATS LOCAL FORWARD -4.0754 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.64558 1.08090 1.62591 1.30535 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 0.00000 * 1 3.08958 2.59576 3.13770 0.17852 1 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 2 3.43422 0.13008 3.48363 2.82980 2 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 3 3.08958 2.59576 3.13770 0.17852 3 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 4 3.43422 0.13008 3.48363 2.82980 4 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 5 3.08958 2.59576 3.13770 0.17852 5 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 6 3.43422 0.13008 3.48363 2.82980 6 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 7 2.94820 3.58873 0.11705 3.49350 7 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 8 0.14177 3.38122 2.80255 3.28298 8 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 9 2.94820 3.58873 0.11705 3.49350 9 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 10 3.43422 0.13008 3.48363 2.82980 10 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 11 3.43422 0.13008 3.48363 2.82980 11 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 12 0.14177 3.38122 2.80255 3.28298 12 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 13 3.08958 2.59576 3.13770 0.17852 13 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 14 3.43422 0.13008 3.48363 2.82980 14 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 15 3.43422 0.13008 3.48363 2.82980 15 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 16 3.43422 0.13008 3.48363 2.82980 16 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 17 3.43422 0.13008 3.48363 2.82980 17 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 18 2.94820 3.58873 0.11705 3.49350 18 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 19 3.08958 2.59576 3.13770 0.17852 19 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 20 2.94820 3.58873 0.11705 3.49350 20 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 21 3.43422 0.13008 3.48363 2.82980 21 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 22 0.14177 3.38122 2.80255 3.28298 22 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 23 3.08958 2.59576 3.13770 0.17852 23 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 24 2.94820 3.58873 0.11705 3.49350 24 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 25 3.43422 0.13008 3.48363 2.82980 25 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 26 3.43422 0.13008 3.48363 2.82980 26 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 27 0.14177 3.38122 2.80255 3.28298 27 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 28 3.43422 0.13008 3.48363 2.82980 28 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 29 0.14177 3.38122 2.80255 3.28298 29 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 30 3.08958 2.59576 3.13770 0.17852 30 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 31 3.08958 2.59576 3.13770 0.17852 31 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 32 3.08958 2.59576 3.13770 0.17852 32 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 33 3.43422 0.13008 3.48363 2.82980 33 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 34 3.08958 2.59576 3.13770 0.17852 34 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 35 3.43422 0.13008 3.48363 2.82980 35 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 36 0.14177 3.38122 2.80255 3.28298 36 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 37 2.94820 3.58873 0.11705 3.49350 37 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 38 3.08958 2.59576 3.13770 0.17852 38 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 39 2.94820 3.58873 0.11705 3.49350 39 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 40 3.08958 2.59576 3.13770 0.17852 40 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 41 3.43422 0.13008 3.48363 2.82980 41 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 42 2.94820 3.58873 0.11705 3.49350 42 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 43 0.14177 3.38122 2.80255 3.28298 43 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 44 0.14177 3.38122 2.80255 3.28298 44 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 45 2.76326 1.89083 2.82328 0.31944 45 - - 1.38629 1.38629 1.38629 1.38629 0.01860 3.99373 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Euglenozoa_58S_end_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 21:20:07 2012 NSEQ 10 EFFN 3.364258 CKSUM 1761663145 STATS LOCAL MSV -8.0329 0.71931 STATS LOCAL VITERBI -7.7753 0.71931 STATS LOCAL FORWARD -4.1828 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.64380 1.18343 1.62478 1.19213 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 0.00000 * 1 3.44834 0.12841 3.49715 2.84007 1 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 2 3.10197 2.60364 3.14962 0.17654 2 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 3 3.44834 0.12841 3.49715 2.84007 3 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 4 2.85311 2.04951 2.90999 0.27567 4 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 5 0.14016 3.39348 2.81050 3.29640 5 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 6 3.10197 2.60364 3.14962 0.17654 6 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 7 3.10197 2.60364 3.14962 0.17654 7 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 8 2.95673 3.60115 0.11570 3.50722 8 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 9 3.10197 2.60364 3.14962 0.17654 9 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 10 2.95673 3.60115 0.11570 3.50722 10 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 11 3.10197 2.60364 3.14962 0.17654 11 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 12 3.44834 0.12841 3.49715 2.84007 12 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 13 0.14016 3.39348 2.81050 3.29640 13 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 14 3.10197 2.60364 3.14962 0.17654 14 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 15 3.44834 0.12841 3.49715 2.84007 15 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 16 3.44834 0.12841 3.49715 2.84007 16 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 17 3.44834 0.12841 3.49715 2.84007 17 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 18 3.44834 0.12841 3.49715 2.84007 18 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 19 2.95673 3.60115 0.11570 3.50722 19 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 20 3.10197 2.60364 3.14962 0.17654 20 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 21 2.95673 3.60115 0.11570 3.50722 21 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 22 3.44834 0.12841 3.49715 2.84007 22 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 23 0.14016 3.39348 2.81050 3.29640 23 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 24 3.10197 2.60364 3.14962 0.17654 24 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 25 2.95673 3.60115 0.11570 3.50722 25 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 26 3.44834 0.12841 3.49715 2.84007 26 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 27 3.44834 0.12841 3.49715 2.84007 27 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 28 0.14016 3.39348 2.81050 3.29640 28 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 29 3.10197 2.60364 3.14962 0.17654 29 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 30 0.14016 3.39348 2.81050 3.29640 30 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 31 3.10197 2.60364 3.14962 0.17654 31 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 32 3.10197 2.60364 3.14962 0.17654 32 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 33 3.44834 0.12841 3.49715 2.84007 33 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 34 3.10197 2.60364 3.14962 0.17654 34 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 35 3.44834 0.12841 3.49715 2.84007 35 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 36 0.14016 3.39348 2.81050 3.29640 36 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 37 2.95673 3.60115 0.11570 3.50722 37 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 38 3.10197 2.60364 3.14962 0.17654 38 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 39 2.95673 3.60115 0.11570 3.50722 39 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 40 3.10197 2.60364 3.14962 0.17654 40 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 41 3.44834 0.12841 3.49715 2.84007 41 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 42 2.95673 3.60115 0.11570 3.50722 42 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 43 0.14016 3.39348 2.81050 3.29640 43 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 44 0.14016 3.39348 2.81050 3.29640 44 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01895 4.01895 1.46634 0.26236 1.09861 0.40547 45 3.44834 0.12841 3.49715 2.84007 45 - - 1.38629 1.38629 1.38629 1.38629 0.01847 4.00081 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Euglenozoa_58S_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 21:20:00 2012 NSEQ 3 EFFN 3.000000 CKSUM 1286592291 STATS LOCAL MSV -8.1373 0.72009 STATS LOCAL VITERBI -7.9096 0.72009 STATS LOCAL FORWARD -3.7767 0.72009 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.93030 1.04903 1.32920 1.42741 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 3.30705 0.14631 3.36166 2.73626 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.97980 2.52563 3.03204 0.19727 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.86982 3.47591 0.13017 3.36931 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 3.30705 0.14631 3.36166 2.73626 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 0.15719 3.27118 2.73043 3.16274 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.86982 3.47591 0.13017 3.36931 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.97980 2.52563 3.03204 0.19727 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.97980 2.52563 3.03204 0.19727 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.30705 0.14631 3.36166 2.73626 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 3.30705 0.14631 3.36166 2.73626 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.30705 0.14631 3.36166 2.73626 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.97980 2.52563 3.03204 0.19727 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 3.30705 0.14631 3.36166 2.73626 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.15719 3.27118 2.73043 3.16274 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.86982 3.47591 0.13017 3.36931 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.97980 2.52563 3.03204 0.19727 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.15719 3.27118 2.73043 3.16274 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 3.30705 0.14631 3.36166 2.73626 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.86982 3.47591 0.13017 3.36931 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 0.15719 3.27118 2.73043 3.16274 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Euglenozoa_58S_start_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 20:59:41 2012 NSEQ 60 EFFN 3.709717 CKSUM 2951457206 STATS LOCAL MSV -7.0592 0.71932 STATS LOCAL VITERBI -7.6953 0.71932 STATS LOCAL FORWARD -4.4755 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.47506 1.53206 1.31293 1.25137 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 0.00000 * 1 2.81230 0.36257 2.87896 1.67210 1 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 2 0.15880 3.31741 2.80140 2.99844 2 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 3 0.12745 3.49654 2.87698 3.40944 3 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 4 3.56652 0.11536 3.61013 2.92516 4 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 5 3.02701 3.70437 0.10516 3.62145 5 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 6 3.07464 2.34317 3.12362 0.20607 6 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 7 3.02701 3.70437 0.10516 3.62145 7 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 8 3.20757 2.67063 3.25111 0.16063 8 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 9 3.56652 0.11536 3.61013 2.92516 9 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 10 2.93962 3.51998 0.13184 3.19334 10 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 11 3.56652 0.11536 3.61013 2.92516 11 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 12 3.02701 3.70437 0.10516 3.62145 12 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 13 0.12745 3.49654 2.87698 3.40944 13 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 14 3.20757 2.67063 3.25111 0.16063 14 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 15 3.02701 3.70437 0.10516 3.62145 15 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 16 3.02701 3.70437 0.10516 3.62145 16 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 17 0.12745 3.49654 2.87698 3.40944 17 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 18 3.20757 2.67063 3.25111 0.16063 18 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 19 3.02701 3.70437 0.10516 3.62145 19 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 20 0.14615 3.42302 2.69379 3.33166 20 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 21 3.56652 0.11536 3.61013 2.92516 21 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 22 3.20757 2.67063 3.25111 0.16063 22 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 23 3.20757 2.67063 3.25111 0.16063 23 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 24 3.02701 3.70437 0.10516 3.62145 24 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 25 3.02701 3.70437 0.10516 3.62145 25 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 26 3.56652 0.11536 3.61013 2.92516 26 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 27 3.20757 2.67063 3.25111 0.16063 27 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 28 3.20757 2.67063 3.25111 0.16063 28 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 29 3.56652 0.11536 3.61013 2.92516 29 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 30 3.56652 0.11536 3.61013 2.92516 30 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 31 2.93690 2.05163 2.99156 0.26366 31 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 32 0.21966 3.18213 2.21242 3.07315 32 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 33 2.65599 2.43617 2.15637 0.31947 33 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 34 3.20757 2.67063 3.25111 0.16063 34 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 35 3.20757 2.67063 3.25111 0.16063 35 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 36 3.56652 0.11536 3.61013 2.92516 36 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 37 2.90263 3.44668 0.14401 3.04937 37 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 38 3.05824 2.30650 3.10791 0.21230 38 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 39 3.20757 2.67063 3.25111 0.16063 39 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 40 3.02701 3.70437 0.10516 3.62145 40 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 41 0.12745 3.49654 2.87698 3.40944 41 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 42 0.12745 3.49654 2.87698 3.40944 42 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 43 2.56281 2.78185 0.23222 2.68510 43 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 44 0.12745 3.49654 2.87698 3.40944 44 - - 1.38629 1.38629 1.38629 1.38629 0.03443 4.07918 4.07918 1.46634 0.26236 1.09861 0.40547 45 0.12745 3.49654 2.87698 3.40944 45 - - 1.38629 1.38629 1.38629 1.38629 0.01736 4.06212 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Euglenozoa_58S_start_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 21:01:50 2012 NSEQ 4 EFFN 3.214844 CKSUM 3244284289 STATS LOCAL MSV -8.0494 0.71931 STATS LOCAL VITERBI -7.8071 0.71931 STATS LOCAL FORWARD -4.2819 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33872 1.32622 1.38203 1.50836 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 0.00000 * 1 3.39256 0.13515 3.44371 2.79938 1 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 2 0.14663 3.34511 2.77903 3.24347 2 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 3 0.14663 3.34511 2.77903 3.24347 3 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 4 3.39256 0.13515 3.44371 2.79938 4 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 5 3.05326 2.57263 3.10276 0.18448 5 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 6 3.39256 0.13515 3.44371 2.79938 6 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 7 0.14663 3.34511 2.77903 3.24347 7 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 8 3.05326 2.57263 3.10276 0.18448 8 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 9 0.14663 3.34511 2.77903 3.24347 9 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 10 0.14663 3.34511 2.77903 3.24347 10 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 11 3.39256 0.13515 3.44371 2.79938 11 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 12 0.14663 3.34511 2.77903 3.24347 12 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 13 2.92285 3.55196 0.12115 3.45295 13 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 14 3.05326 2.57263 3.10276 0.18448 14 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 15 2.92285 3.55196 0.12115 3.45295 15 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 16 2.92285 3.55196 0.12115 3.45295 16 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 17 0.14663 3.34511 2.77903 3.24347 17 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 18 3.05326 2.57263 3.10276 0.18448 18 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 19 2.92285 3.55196 0.12115 3.45295 19 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 20 3.05326 2.57263 3.10276 0.18448 20 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 21 3.39256 0.13515 3.44371 2.79938 21 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 22 3.05326 2.57263 3.10276 0.18448 22 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 23 3.05326 2.57263 3.10276 0.18448 23 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 24 2.92285 3.55196 0.12115 3.45295 24 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 25 2.92285 3.55196 0.12115 3.45295 25 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 26 3.39256 0.13515 3.44371 2.79938 26 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 27 3.05326 2.57263 3.10276 0.18448 27 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 28 3.39256 0.13515 3.44371 2.79938 28 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 29 3.39256 0.13515 3.44371 2.79938 29 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 30 3.39256 0.13515 3.44371 2.79938 30 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 31 3.39256 0.13515 3.44371 2.79938 31 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 32 0.14663 3.34511 2.77903 3.24347 32 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 33 2.92285 3.55196 0.12115 3.45295 33 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 34 3.05326 2.57263 3.10276 0.18448 34 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 35 3.39256 0.13515 3.44371 2.79938 35 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 36 2.92285 3.55196 0.12115 3.45295 36 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 37 0.14663 3.34511 2.77903 3.24347 37 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 38 3.05326 2.57263 3.10276 0.18448 38 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 39 2.92285 3.55196 0.12115 3.45295 39 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 40 0.14663 3.34511 2.77903 3.24347 40 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 41 0.14663 3.34511 2.77903 3.24347 41 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 42 2.92285 3.55196 0.12115 3.45295 42 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 43 2.92285 3.55196 0.12115 3.45295 43 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 44 0.14663 3.34511 2.77903 3.24347 44 - - 1.38629 1.38629 1.38629 1.38629 0.03763 3.99173 3.99173 1.46634 0.26236 1.09861 0.40547 45 3.39256 0.13515 3.44371 2.79938 45 - - 1.38629 1.38629 1.38629 1.38629 0.01899 3.97309 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Euglenozoa_4_LSU_start_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 21:57:31 2012 NSEQ 3 EFFN 3.000000 CKSUM 1715626233 STATS LOCAL MSV -8.0936 0.72023 STATS LOCAL VITERBI -7.5457 0.72023 STATS LOCAL FORWARD -3.8158 0.72023 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.28061 1.32941 1.44863 1.50234 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.97980 2.52563 3.03204 0.19727 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.97980 2.52563 3.03204 0.19727 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 0.15719 3.27118 2.73043 3.16274 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.97980 2.52563 3.03204 0.19727 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.86982 3.47591 0.13017 3.36931 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.97980 2.52563 3.03204 0.19727 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.86982 3.47591 0.13017 3.36931 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.97980 2.52563 3.03204 0.19727 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.86982 3.47591 0.13017 3.36931 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.30705 0.14631 3.36166 2.73626 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.15719 3.27118 2.73043 3.16274 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.86982 3.47591 0.13017 3.36931 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 0.15719 3.27118 2.73043 3.16274 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 3.30705 0.14631 3.36166 2.73626 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.86982 3.47591 0.13017 3.36931 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.97980 2.52563 3.03204 0.19727 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 0.15719 3.27118 2.73043 3.16274 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.97980 2.52563 3.03204 0.19727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.97980 2.52563 3.03204 0.19727 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 0.15719 3.27118 2.73043 3.16274 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.86982 3.47591 0.13017 3.36931 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.97980 2.52563 3.03204 0.19727 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 0.15719 3.27118 2.73043 3.16274 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.97980 2.52563 3.03204 0.19727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Euglenozoa_4_LSU_start_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 21:57:39 2012 NSEQ 5 EFFN 3.129883 CKSUM 3692703187 STATS LOCAL MSV -8.1014 0.71932 STATS LOCAL VITERBI -7.6315 0.71932 STATS LOCAL FORWARD -3.8081 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.28086 1.16099 1.38291 1.84405 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 0.00000 * 1 3.35951 0.13934 3.41202 2.77509 1 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 2 0.15061 3.31651 2.76031 3.21221 2 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 3 3.35951 0.13934 3.41202 2.77509 3 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 4 0.15061 3.31651 2.76031 3.21221 4 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 5 2.90252 3.52266 0.12454 3.42069 5 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 6 0.15061 3.31651 2.76031 3.21221 6 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 7 3.35951 0.13934 3.41202 2.77509 7 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 8 3.35951 0.13934 3.41202 2.77509 8 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 9 3.02470 2.55440 3.07528 0.18933 9 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 10 2.90252 3.52266 0.12454 3.42069 10 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 11 0.15061 3.31651 2.76031 3.21221 11 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 12 2.90252 3.52266 0.12454 3.42069 12 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 13 3.35951 0.13934 3.41202 2.77509 13 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 14 2.90252 3.52266 0.12454 3.42069 14 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 15 3.35951 0.13934 3.41202 2.77509 15 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 16 2.90252 3.52266 0.12454 3.42069 16 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 17 2.90252 3.52266 0.12454 3.42069 17 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 18 3.35951 0.13934 3.41202 2.77509 18 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 19 0.15061 3.31651 2.76031 3.21221 19 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 20 2.90252 3.52266 0.12454 3.42069 20 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 21 2.90252 3.52266 0.12454 3.42069 21 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 22 0.15061 3.31651 2.76031 3.21221 22 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 23 3.35951 0.13934 3.41202 2.77509 23 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 24 3.02470 2.55440 3.07528 0.18933 24 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 25 0.15061 3.31651 2.76031 3.21221 25 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 26 3.35951 0.13934 3.41202 2.77509 26 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 27 3.35951 0.13934 3.41202 2.77509 27 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 28 3.35951 0.13934 3.41202 2.77509 28 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 29 2.90252 3.52266 0.12454 3.42069 29 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 30 3.35951 0.13934 3.41202 2.77509 30 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 31 3.35951 0.13934 3.41202 2.77509 31 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 32 2.90252 3.52266 0.12454 3.42069 32 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 33 0.15061 3.31651 2.76031 3.21221 33 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 34 0.15061 3.31651 2.76031 3.21221 34 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 35 3.35951 0.13934 3.41202 2.77509 35 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 36 3.02470 2.55440 3.07528 0.18933 36 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 37 3.02470 2.55440 3.07528 0.18933 37 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 38 0.15061 3.31651 2.76031 3.21221 38 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 39 0.15061 3.31651 2.76031 3.21221 39 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 40 2.90252 3.52266 0.12454 3.42069 40 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 41 3.35951 0.13934 3.41202 2.77509 41 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 42 0.15061 3.31651 2.76031 3.21221 42 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 43 3.02470 2.55440 3.07528 0.18933 43 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 44 0.15061 3.31651 2.76031 3.21221 44 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97591 3.97591 1.46634 0.26236 1.09861 0.40547 45 3.02470 2.55440 3.07528 0.18933 45 - - 1.38629 1.38629 1.38629 1.38629 0.01931 3.95697 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Euglenozoa_4_LSU_start_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 21:57:46 2012 NSEQ 2 EFFN 2.000000 CKSUM 2807236311 STATS LOCAL MSV -7.3996 0.72794 STATS LOCAL VITERBI -8.2623 0.72794 STATS LOCAL FORWARD -3.4447 0.72794 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.23771 1.40555 1.43188 1.48784 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.57915 2.25909 2.64442 0.28946 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.23862 2.84929 2.43386 2.70756 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.23862 2.84929 2.43386 2.70756 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.53331 3.02441 0.20344 2.88069 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.53331 3.02441 0.20344 2.88069 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.23862 2.84929 2.43386 2.70756 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.53331 3.02441 0.20344 2.88069 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Euglenozoa_1_SSU_end_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 20:54:59 2012 NSEQ 19 EFFN 3.400146 CKSUM 2809811454 STATS LOCAL MSV -7.3985 0.71931 STATS LOCAL VITERBI -7.6109 0.71931 STATS LOCAL FORWARD -4.3416 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.31740 1.61716 1.24218 1.40668 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 0.00000 * 1 0.13870 3.40475 2.81780 3.30874 1 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 2 2.96453 3.61254 0.11448 3.51980 2 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 3 3.11339 2.61089 3.16060 0.17473 3 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 4 3.46130 0.12689 3.50955 2.84948 4 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 5 2.96453 3.61254 0.11448 3.51980 5 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 6 3.11339 2.61089 3.16060 0.17473 6 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 7 0.13870 3.40475 2.81780 3.30874 7 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 8 0.13870 3.40475 2.81780 3.30874 8 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 9 3.46130 0.12689 3.50955 2.84948 9 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 10 0.13870 3.40475 2.81780 3.30874 10 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 11 0.13870 3.40475 2.81780 3.30874 11 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 12 2.96453 3.61254 0.11448 3.51980 12 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 13 2.96453 3.61254 0.11448 3.51980 13 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 14 3.11339 2.61089 3.16060 0.17473 14 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 15 0.13870 3.40475 2.81780 3.30874 15 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 16 2.96453 3.61254 0.11448 3.51980 16 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 17 3.46130 0.12689 3.50955 2.84948 17 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 18 3.11339 2.61089 3.16060 0.17473 18 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 19 2.96453 3.61254 0.11448 3.51980 19 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 20 3.11339 2.61089 3.16060 0.17473 20 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 21 0.13870 3.40475 2.81780 3.30874 21 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 22 2.96453 3.61254 0.11448 3.51980 22 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 23 2.96453 3.61254 0.11448 3.51980 23 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 24 3.11339 2.61089 3.16060 0.17473 24 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 25 2.96453 3.61254 0.11448 3.51980 25 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 26 0.13870 3.40475 2.81780 3.30874 26 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 27 0.13870 3.40475 2.81780 3.30874 27 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 28 3.46130 0.12689 3.50955 2.84948 28 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 29 3.46130 0.12689 3.50955 2.84948 29 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 30 2.42061 2.46773 2.82739 0.26502 30 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 31 2.96453 3.61254 0.11448 3.51980 31 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 32 3.46130 0.12689 3.50955 2.84948 32 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 33 0.13870 3.40475 2.81780 3.30874 33 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 34 2.96453 3.61254 0.11448 3.51980 34 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 35 3.46130 0.12689 3.50955 2.84948 35 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 36 3.11339 2.61089 3.16060 0.17473 36 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 37 2.96453 3.61254 0.11448 3.51980 37 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 38 2.96453 3.61254 0.11448 3.51980 38 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 39 0.13870 3.40475 2.81780 3.30874 39 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 40 3.11339 2.61089 3.16060 0.17473 40 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 41 3.46130 0.12689 3.50955 2.84948 41 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 42 0.13870 3.40475 2.81780 3.30874 42 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 43 2.95906 2.25050 3.01199 0.23119 43 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 44 3.11339 2.61089 3.16060 0.17473 44 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02538 4.02538 1.46634 0.26236 1.09861 0.40547 45 1.62709 2.24353 2.39119 0.50105 45 - - 1.38629 1.38629 1.38629 1.38629 0.01835 4.00736 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Euglenozoa_1_SSU_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 20:55:06 2012 NSEQ 3 EFFN 3.000000 CKSUM 4020611059 STATS LOCAL MSV -8.1570 0.72021 STATS LOCAL VITERBI -7.7566 0.72021 STATS LOCAL FORWARD -4.0990 0.72021 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33642 1.53820 1.24991 1.44428 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 3.30705 0.14631 3.36166 2.73626 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.97980 2.52563 3.03204 0.19727 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 0.15719 3.27118 2.73043 3.16274 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 0.15719 3.27118 2.73043 3.16274 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 0.15719 3.27118 2.73043 3.16274 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.15719 3.27118 2.73043 3.16274 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.97980 2.52563 3.03204 0.19727 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.86982 3.47591 0.13017 3.36931 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 3.30705 0.14631 3.36166 2.73626 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.97980 2.52563 3.03204 0.19727 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.97980 2.52563 3.03204 0.19727 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 0.15719 3.27118 2.73043 3.16274 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.86982 3.47591 0.13017 3.36931 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.97980 2.52563 3.03204 0.19727 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.15719 3.27118 2.73043 3.16274 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 0.15719 3.27118 2.73043 3.16274 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 3.30705 0.14631 3.36166 2.73626 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.97980 2.52563 3.03204 0.19727 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.86982 3.47591 0.13017 3.36931 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 0.15719 3.27118 2.73043 3.16274 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.86982 3.47591 0.13017 3.36931 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.97980 2.52563 3.03204 0.19727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.86982 3.47591 0.13017 3.36931 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.97980 2.52563 3.03204 0.19727 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.97980 2.52563 3.03204 0.19727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * //