Mercurial > repos > okorol > itsx
view ITSx_db/HMMs/P.hmm @ 0:f82c70f54bd7 draft
Uploaded
| author | okorol |
|---|---|
| date | Tue, 24 Mar 2015 12:02:48 -0400 |
| parents | |
| children |
line wrap: on
line source
HMMER3/b [3.0 | March 2010] NAME 3_End_Haptophyceae_58S_end_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Jan 19 21:11:03 2012 NSEQ 2 EFFN 2.000000 CKSUM 2494581836 STATS LOCAL MSV -7.5772 0.72779 STATS LOCAL VITERBI -8.4466 0.72779 STATS LOCAL FORWARD -3.4217 0.72779 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.83092 1.23370 1.22080 1.37229 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.57915 2.25909 2.64442 0.28946 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.81865 0.23582 2.88868 2.35662 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.53331 3.02441 0.20344 2.88069 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Haptophyceae_58S_end_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Jan 19 21:10:55 2012 NSEQ 2 EFFN 2.000000 CKSUM 1644174705 STATS LOCAL MSV -7.4746 0.72790 STATS LOCAL VITERBI -8.3271 0.72790 STATS LOCAL FORWARD -3.4806 0.72790 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.82891 1.28195 1.21975 1.32197 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.81865 0.23582 2.88868 2.35662 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.53331 3.02441 0.20344 2.88069 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Haptophyceae_58S_end_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Jan 19 21:10:31 2012 NSEQ 17 EFFN 3.357666 CKSUM 4226331182 STATS LOCAL MSV -8.1825 0.71932 STATS LOCAL VITERBI -7.8281 0.71932 STATS LOCAL FORWARD -4.1005 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.63377 1.51987 1.38406 1.09211 1.38629 1.38629 1.38629 1.38629 0.07416 4.01776 2.92835 1.46634 0.26236 0.00000 * 1 3.37150 0.13780 3.42352 2.78392 1 - - 1.38629 1.38629 1.38629 1.38629 0.03802 3.98163 3.98163 1.46634 0.26236 0.51452 0.91078 2 0.14043 3.39140 2.80915 3.29412 2 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 3 3.09986 2.60230 3.14759 0.17687 3 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 4 3.09986 2.60230 3.14759 0.17687 4 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 5 3.09986 2.60230 3.14759 0.17687 5 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 6 3.44594 0.12869 3.49485 2.83833 6 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 7 3.44594 0.12869 3.49485 2.83833 7 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 8 0.14043 3.39140 2.80915 3.29412 8 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 9 0.14043 3.39140 2.80915 3.29412 9 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 10 2.95528 3.59904 0.11593 3.50489 10 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 11 3.09986 2.60230 3.14759 0.17687 11 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 12 3.09986 2.60230 3.14759 0.17687 12 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 13 3.09986 2.60230 3.14759 0.17687 13 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 14 3.44594 0.12869 3.49485 2.83833 14 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 15 2.95528 3.59904 0.11593 3.50489 15 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 16 3.44594 0.12869 3.49485 2.83833 16 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 17 3.09986 2.60230 3.14759 0.17687 17 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 18 3.09986 2.60230 3.14759 0.17687 18 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 19 2.95528 3.59904 0.11593 3.50489 19 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 20 2.95528 3.59904 0.11593 3.50489 20 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 21 0.14043 3.39140 2.80915 3.29412 21 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 22 0.14043 3.39140 2.80915 3.29412 22 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 23 2.95528 3.59904 0.11593 3.50489 23 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 24 3.09986 2.60230 3.14759 0.17687 24 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 25 0.14043 3.39140 2.80915 3.29412 25 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 26 3.09986 2.60230 3.14759 0.17687 26 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 27 2.95528 3.59904 0.11593 3.50489 27 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 28 3.09986 2.60230 3.14759 0.17687 28 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 29 3.09986 2.60230 3.14759 0.17687 29 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 30 3.44594 0.12869 3.49485 2.83833 30 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 31 3.44594 0.12869 3.49485 2.83833 31 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 32 3.09986 2.60230 3.14759 0.17687 32 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 33 3.09986 2.60230 3.14759 0.17687 33 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 34 3.44594 0.12869 3.49485 2.83833 34 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 35 2.95528 3.59904 0.11593 3.50489 35 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 36 0.14043 3.39140 2.80915 3.29412 36 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 37 2.95528 3.59904 0.11593 3.50489 37 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 38 3.09986 2.60230 3.14759 0.17687 38 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 39 2.95528 3.59904 0.11593 3.50489 39 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 40 2.95528 3.59904 0.11593 3.50489 40 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 41 0.14043 3.39140 2.80915 3.29412 41 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 42 2.95528 3.59904 0.11593 3.50489 42 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 43 3.09986 2.60230 3.14759 0.17687 43 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 44 3.09986 2.60230 3.14759 0.17687 44 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01776 4.01776 1.46634 0.26236 1.09861 0.40547 45 3.44594 0.12869 3.49485 2.83833 45 - - 1.38629 1.38629 1.38629 1.38629 0.01849 3.99961 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Haptophyceae_58S_end_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Jan 19 21:10:47 2012 NSEQ 2 EFFN 2.000000 CKSUM 1952189013 STATS LOCAL MSV -7.3435 0.72833 STATS LOCAL VITERBI -8.3275 0.72833 STATS LOCAL FORWARD -3.1158 0.72833 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.02063 1.13480 1.20684 1.39919 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 1.89532 1.96405 1.06955 1.00436 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.81865 0.23582 2.88868 2.35662 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.53331 3.02441 0.20344 2.88069 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Haptophyceae_58S_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Jan 19 21:10:39 2012 NSEQ 4 EFFN 3.167969 CKSUM 386469025 STATS LOCAL MSV -8.0445 0.71933 STATS LOCAL VITERBI -7.7049 0.71933 STATS LOCAL FORWARD -4.0059 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.06060 1.09557 1.20633 1.43137 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 0.00000 * 1 3.37444 0.13743 3.42635 2.78609 1 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 2 2.91173 3.53592 0.12299 3.43528 2 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 3 3.37444 0.13743 3.42635 2.78609 3 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 4 3.03758 2.56263 3.08768 0.18713 4 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 5 3.03758 2.56263 3.08768 0.18713 5 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 6 2.91173 3.53592 0.12299 3.43528 6 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 7 3.37444 0.13743 3.42635 2.78609 7 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 8 2.91173 3.53592 0.12299 3.43528 8 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 9 2.91173 3.53592 0.12299 3.43528 9 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 10 2.91173 3.53592 0.12299 3.43528 10 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 11 3.03758 2.56263 3.08768 0.18713 11 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 12 3.03758 2.56263 3.08768 0.18713 12 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 13 3.37444 0.13743 3.42635 2.78609 13 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 14 3.37444 0.13743 3.42635 2.78609 14 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 15 2.91173 3.53592 0.12299 3.43528 15 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 16 3.37444 0.13743 3.42635 2.78609 16 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 17 3.37444 0.13743 3.42635 2.78609 17 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 18 3.37444 0.13743 3.42635 2.78609 18 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 19 2.91173 3.53592 0.12299 3.43528 19 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 20 3.37444 0.13743 3.42635 2.78609 20 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 21 0.14880 3.32943 2.76878 3.22633 21 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 22 0.14880 3.32943 2.76878 3.22633 22 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 23 2.91173 3.53592 0.12299 3.43528 23 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 24 3.37444 0.13743 3.42635 2.78609 24 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 25 0.14880 3.32943 2.76878 3.22633 25 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 26 3.03758 2.56263 3.08768 0.18713 26 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 27 2.91173 3.53592 0.12299 3.43528 27 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 28 3.03758 2.56263 3.08768 0.18713 28 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 29 3.37444 0.13743 3.42635 2.78609 29 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 30 3.03758 2.56263 3.08768 0.18713 30 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 31 3.37444 0.13743 3.42635 2.78609 31 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 32 3.03758 2.56263 3.08768 0.18713 32 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 33 3.03758 2.56263 3.08768 0.18713 33 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 34 3.37444 0.13743 3.42635 2.78609 34 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 35 2.91173 3.53592 0.12299 3.43528 35 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 36 0.14880 3.32943 2.76878 3.22633 36 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 37 2.91173 3.53592 0.12299 3.43528 37 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 38 3.03758 2.56263 3.08768 0.18713 38 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 39 2.91173 3.53592 0.12299 3.43528 39 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 40 2.91173 3.53592 0.12299 3.43528 40 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 41 3.37444 0.13743 3.42635 2.78609 41 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 42 2.91173 3.53592 0.12299 3.43528 42 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 43 3.03758 2.56263 3.08768 0.18713 43 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 44 3.37444 0.13743 3.42635 2.78609 44 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 45 3.37444 0.13743 3.42635 2.78609 45 - - 1.38629 1.38629 1.38629 1.38629 0.01917 3.96423 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Haptophyceae_58S_start_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Oct 8 23:12:04 2011 NSEQ 17 EFFN 3.415771 CKSUM 984267216 STATS LOCAL MSV -7.5702 0.71931 STATS LOCAL VITERBI -7.6889 0.71931 STATS LOCAL FORWARD -4.3391 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.26671 1.28068 1.46004 1.56941 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 0.00000 * 1 3.46689 0.12625 3.51491 2.85353 1 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 2 0.13808 3.40961 2.82095 3.31407 2 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 3 0.13808 3.40961 2.82095 3.31407 3 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 4 3.46689 0.12625 3.51491 2.85353 4 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 5 3.11833 2.61403 3.16534 0.17396 5 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 6 3.46689 0.12625 3.51491 2.85353 6 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 7 3.46689 0.12625 3.51491 2.85353 7 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 8 3.11833 2.61403 3.16534 0.17396 8 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 9 2.42114 3.33331 0.17948 3.22383 9 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 10 3.11833 2.61403 3.16534 0.17396 10 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 11 3.46689 0.12625 3.51491 2.85353 11 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 12 2.96789 3.61745 0.11396 3.52522 12 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 13 0.13808 3.40961 2.82095 3.31407 13 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 14 0.13808 3.40961 2.82095 3.31407 14 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 15 2.96789 3.61745 0.11396 3.52522 15 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 16 2.96789 3.61745 0.11396 3.52522 16 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 17 0.13808 3.40961 2.82095 3.31407 17 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 18 3.11833 2.61403 3.16534 0.17396 18 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 19 0.13808 3.40961 2.82095 3.31407 19 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 20 3.11833 2.61403 3.16534 0.17396 20 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 21 3.46689 0.12625 3.51491 2.85353 21 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 22 3.11833 2.61403 3.16534 0.17396 22 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 23 3.11833 2.61403 3.16534 0.17396 23 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 24 2.67107 3.05829 0.22183 2.49130 24 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 25 2.96789 3.61745 0.11396 3.52522 25 - - 1.38629 1.38629 1.38629 1.38629 0.07935 4.02816 2.83906 1.46634 0.26236 1.09861 0.40547 26 2.78802 0.26730 2.44352 2.45156 26 - - 1.38629 1.38629 1.38629 1.38629 0.03783 3.98664 3.98664 1.46634 0.26236 0.47560 0.97156 27 3.11833 2.61403 3.16534 0.17396 27 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 28 3.21286 0.18569 3.26887 2.39494 28 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 29 3.46689 0.12625 3.51491 2.85353 29 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 30 3.46689 0.12625 3.51491 2.85353 30 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 31 2.96789 3.61745 0.11396 3.52522 31 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 32 3.46689 0.12625 3.51491 2.85353 32 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 33 0.13808 3.40961 2.82095 3.31407 33 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 34 0.13808 3.40961 2.82095 3.31407 34 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 35 2.63508 0.21517 3.05648 2.59251 35 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 36 2.96789 3.61745 0.11396 3.52522 36 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 37 0.13808 3.40961 2.82095 3.31407 37 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 38 3.11833 2.61403 3.16534 0.17396 38 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 39 2.96789 3.61745 0.11396 3.52522 39 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 40 0.13808 3.40961 2.82095 3.31407 40 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 41 0.13808 3.40961 2.82095 3.31407 41 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 42 2.96789 3.61745 0.11396 3.52522 42 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 43 0.13808 3.40961 2.82095 3.31407 43 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 44 0.13808 3.40961 2.82095 3.31407 44 - - 1.38629 1.38629 1.38629 1.38629 0.03626 4.02816 4.02816 1.46634 0.26236 1.09861 0.40547 45 3.46689 0.12625 3.51491 2.85353 45 - - 1.38629 1.38629 1.38629 1.38629 0.01830 4.01020 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Haptophyceae_58S_start_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Oct 8 23:12:12 2011 NSEQ 10 EFFN 3.286133 CKSUM 3298406165 STATS LOCAL MSV -8.1939 0.71932 STATS LOCAL VITERBI -7.5734 0.71932 STATS LOCAL FORWARD -4.1231 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.35247 1.26032 1.44611 1.50350 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 0.00000 * 1 3.41954 0.13184 3.46957 2.81911 1 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 2 0.14346 3.36849 2.79427 3.26904 2 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 3 0.14346 3.36849 2.79427 3.26904 3 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 4 3.41954 0.13184 3.46957 2.81911 4 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 5 3.07674 2.58759 3.12535 0.18060 5 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 6 3.41954 0.13184 3.46957 2.81911 6 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 7 3.41954 0.13184 3.46957 2.81911 7 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 8 3.07674 2.58759 3.12535 0.18060 8 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 9 2.93930 3.57580 0.11848 3.47923 9 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 10 3.41954 0.13184 3.46957 2.81911 10 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 11 3.41954 0.13184 3.46957 2.81911 11 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 12 2.93930 3.57580 0.11848 3.47923 12 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 13 0.14346 3.36849 2.79427 3.26904 13 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 14 3.07674 2.58759 3.12535 0.18060 14 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 15 2.93930 3.57580 0.11848 3.47923 15 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 16 2.93930 3.57580 0.11848 3.47923 16 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 17 0.14346 3.36849 2.79427 3.26904 17 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 18 3.07674 2.58759 3.12535 0.18060 18 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 19 0.14346 3.36849 2.79427 3.26904 19 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 20 3.07674 2.58759 3.12535 0.18060 20 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 21 3.41954 0.13184 3.46957 2.81911 21 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 22 3.07674 2.58759 3.12535 0.18060 22 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 23 3.07674 2.58759 3.12535 0.18060 23 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 24 2.93930 3.57580 0.11848 3.47923 24 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 25 2.93930 3.57580 0.11848 3.47923 25 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 26 3.41954 0.13184 3.46957 2.81911 26 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 27 3.07674 2.58759 3.12535 0.18060 27 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 28 3.41954 0.13184 3.46957 2.81911 28 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 29 3.07674 2.58759 3.12535 0.18060 29 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 30 3.41954 0.13184 3.46957 2.81911 30 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 31 2.93930 3.57580 0.11848 3.47923 31 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 32 3.41954 0.13184 3.46957 2.81911 32 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 33 0.14346 3.36849 2.79427 3.26904 33 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 34 0.33718 2.84959 1.81694 2.72072 34 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 35 3.41954 0.13184 3.46957 2.81911 35 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 36 2.93930 3.57580 0.11848 3.47923 36 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 37 0.14346 3.36849 2.79427 3.26904 37 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 38 3.07674 2.58759 3.12535 0.18060 38 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 39 2.93930 3.57580 0.11848 3.47923 39 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 40 0.14346 3.36849 2.79427 3.26904 40 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 41 0.14346 3.36849 2.79427 3.26904 41 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 42 2.93930 3.57580 0.11848 3.47923 42 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 43 0.14346 3.36849 2.79427 3.26904 43 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 44 0.14346 3.36849 2.79427 3.26904 44 - - 1.38629 1.38629 1.38629 1.38629 0.03714 4.00481 4.00481 1.46634 0.26236 1.09861 0.40547 45 3.41954 0.13184 3.46957 2.81911 45 - - 1.38629 1.38629 1.38629 1.38629 0.01874 3.98641 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Haptophyceae_4_LSU_start_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Oct 8 23:27:11 2011 NSEQ 10 EFFN 3.325195 CKSUM 3619195996 STATS LOCAL MSV -7.9947 0.71933 STATS LOCAL VITERBI -7.6796 0.71933 STATS LOCAL FORWARD -4.1782 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.21992 1.19976 1.63918 1.56380 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 0.00000 * 1 3.43404 0.13010 3.48346 2.82967 1 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 2 3.08942 2.59566 3.13755 0.17855 2 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 3 3.43404 0.13010 3.48346 2.82967 3 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 4 3.43404 0.13010 3.48346 2.82967 4 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 5 3.08942 2.59566 3.13755 0.17855 5 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 6 3.43404 0.13010 3.48346 2.82967 6 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 7 3.43404 0.13010 3.48346 2.82967 7 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 8 0.14179 3.38107 2.80245 3.28281 8 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 9 3.08942 2.59566 3.13755 0.17855 9 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 10 3.43404 0.13010 3.48346 2.82967 10 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 11 2.94809 3.58857 0.11707 3.49333 11 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 12 0.14179 3.38107 2.80245 3.28281 12 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 13 0.14179 3.38107 2.80245 3.28281 13 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 14 3.08942 2.59566 3.13755 0.17855 14 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 15 2.94809 3.58857 0.11707 3.49333 15 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 16 2.94809 3.58857 0.11707 3.49333 16 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 17 0.14179 3.38107 2.80245 3.28281 17 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 18 2.33674 2.54426 0.42594 1.76216 18 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 19 3.43404 0.13010 3.48346 2.82967 19 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 20 0.14179 3.38107 2.80245 3.28281 20 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 21 0.14179 3.38107 2.80245 3.28281 21 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 22 2.94809 3.58857 0.11707 3.49333 22 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 23 0.14179 3.38107 2.80245 3.28281 23 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 24 3.43404 0.13010 3.48346 2.82967 24 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 25 3.08942 2.59566 3.13755 0.17855 25 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 26 0.14179 3.38107 2.80245 3.28281 26 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 27 3.43404 0.13010 3.48346 2.82967 27 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 28 3.43404 0.13010 3.48346 2.82967 28 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 29 3.43404 0.13010 3.48346 2.82967 29 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 30 2.94809 3.58857 0.11707 3.49333 30 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 31 3.43404 0.13010 3.48346 2.82967 31 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 32 3.08942 2.59566 3.13755 0.17855 32 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 33 2.94809 3.58857 0.11707 3.49333 33 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 34 0.14179 3.38107 2.80245 3.28281 34 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 35 0.14179 3.38107 2.80245 3.28281 35 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 36 3.43404 0.13010 3.48346 2.82967 36 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 37 3.08942 2.59566 3.13755 0.17855 37 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 38 3.08942 2.59566 3.13755 0.17855 38 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 39 0.14179 3.38107 2.80245 3.28281 39 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 40 0.14179 3.38107 2.80245 3.28281 40 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 41 2.94809 3.58857 0.11707 3.49333 41 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 42 3.43404 0.13010 3.48346 2.82967 42 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 43 0.14179 3.38107 2.80245 3.28281 43 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 44 3.08942 2.59566 3.13755 0.17855 44 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 45 0.14179 3.38107 2.80245 3.28281 45 - - 1.38629 1.38629 1.38629 1.38629 0.01860 3.99364 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Haptophyceae_4_LSU_start_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Oct 8 23:27:21 2011 NSEQ 6 EFFN 3.331055 CKSUM 3521784046 STATS LOCAL MSV -8.2010 0.71932 STATS LOCAL VITERBI -7.6469 0.71932 STATS LOCAL FORWARD -4.0144 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.15831 1.31544 1.48091 1.65969 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 0.00000 * 1 0.14154 3.38294 2.80366 3.28486 1 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 2 3.43619 0.12984 3.48552 2.83124 2 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 3 2.15088 1.44016 0.63909 2.12899 3 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 4 3.43619 0.12984 3.48552 2.83124 4 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 5 2.94939 3.59047 0.11686 3.49542 5 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 6 3.43619 0.12984 3.48552 2.83124 6 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 7 3.43619 0.12984 3.48552 2.83124 7 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 8 0.14154 3.38294 2.80366 3.28486 8 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 9 3.09131 2.59686 3.13936 0.17824 9 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 10 3.43619 0.12984 3.48552 2.83124 10 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 11 2.94939 3.59047 0.11686 3.49542 11 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 12 0.14154 3.38294 2.80366 3.28486 12 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 13 0.14154 3.38294 2.80366 3.28486 13 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 14 3.09131 2.59686 3.13936 0.17824 14 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 15 2.94939 3.59047 0.11686 3.49542 15 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 16 0.14154 3.38294 2.80366 3.28486 16 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 17 2.94939 3.59047 0.11686 3.49542 17 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 18 2.94939 3.59047 0.11686 3.49542 18 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 19 3.43619 0.12984 3.48552 2.83124 19 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 20 0.14154 3.38294 2.80366 3.28486 20 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 21 0.14154 3.38294 2.80366 3.28486 21 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 22 2.94939 3.59047 0.11686 3.49542 22 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 23 0.14154 3.38294 2.80366 3.28486 23 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 24 3.43619 0.12984 3.48552 2.83124 24 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 25 3.09131 2.59686 3.13936 0.17824 25 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 26 0.14154 3.38294 2.80366 3.28486 26 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 27 3.43619 0.12984 3.48552 2.83124 27 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 28 3.43619 0.12984 3.48552 2.83124 28 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 29 3.43619 0.12984 3.48552 2.83124 29 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 30 2.94939 3.59047 0.11686 3.49542 30 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 31 3.43619 0.12984 3.48552 2.83124 31 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 32 3.09131 2.59686 3.13936 0.17824 32 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 33 2.94939 3.59047 0.11686 3.49542 33 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 34 0.14154 3.38294 2.80366 3.28486 34 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 35 0.14154 3.38294 2.80366 3.28486 35 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 36 3.09131 2.59686 3.13936 0.17824 36 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 37 3.09131 2.59686 3.13936 0.17824 37 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 38 3.09131 2.59686 3.13936 0.17824 38 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 39 0.14154 3.38294 2.80366 3.28486 39 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 40 0.14154 3.38294 2.80366 3.28486 40 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 41 2.94939 3.59047 0.11686 3.49542 41 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 42 3.43619 0.12984 3.48552 2.83124 42 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 43 0.14154 3.38294 2.80366 3.28486 43 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 44 3.09131 2.59686 3.13936 0.17824 44 - - 1.38629 1.38629 1.38629 1.38629 0.03683 4.01296 4.01296 1.46634 0.26236 1.09861 0.40547 45 0.14154 3.38294 2.80366 3.28486 45 - - 1.38629 1.38629 1.38629 1.38629 0.01858 3.99472 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Haptophyceae_1_SSU_end_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Oct 8 23:07:22 2011 NSEQ 11 EFFN 3.225342 CKSUM 243674475 STATS LOCAL MSV -8.0048 0.71933 STATS LOCAL VITERBI -7.6830 0.71933 STATS LOCAL FORWARD -4.1089 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27189 1.62644 1.24659 1.44567 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 0.00000 * 1 0.14615 3.34859 2.78130 3.24727 1 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 2 2.92530 3.55551 0.12075 3.45686 2 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 3 3.05675 2.57485 3.10612 0.18390 3 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 4 3.39657 0.13465 3.44756 2.80232 4 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 5 2.92530 3.55551 0.12075 3.45686 5 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 6 3.05675 2.57485 3.10612 0.18390 6 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 7 0.14615 3.34859 2.78130 3.24727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 8 0.14615 3.34859 2.78130 3.24727 8 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 9 3.39657 0.13465 3.44756 2.80232 9 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 10 0.14615 3.34859 2.78130 3.24727 10 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 11 0.14615 3.34859 2.78130 3.24727 11 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 12 2.92530 3.55551 0.12075 3.45686 12 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 13 2.92530 3.55551 0.12075 3.45686 13 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 14 3.05675 2.57485 3.10612 0.18390 14 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 15 3.05675 2.57485 3.10612 0.18390 15 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 16 3.05675 2.57485 3.10612 0.18390 16 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 17 3.39657 0.13465 3.44756 2.80232 17 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 18 3.39657 0.13465 3.44756 2.80232 18 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 19 2.92530 3.55551 0.12075 3.45686 19 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 20 3.05675 2.57485 3.10612 0.18390 20 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 21 0.14615 3.34859 2.78130 3.24727 21 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 22 2.92530 3.55551 0.12075 3.45686 22 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 23 2.92530 3.55551 0.12075 3.45686 23 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 24 3.05675 2.57485 3.10612 0.18390 24 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 25 2.92530 3.55551 0.12075 3.45686 25 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 26 0.14615 3.34859 2.78130 3.24727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 27 0.14615 3.34859 2.78130 3.24727 27 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 28 3.39657 0.13465 3.44756 2.80232 28 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 29 3.39657 0.13465 3.44756 2.80232 29 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 30 3.05675 2.57485 3.10612 0.18390 30 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 31 2.92530 3.55551 0.12075 3.45686 31 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 32 3.39657 0.13465 3.44756 2.80232 32 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 33 2.92530 3.55551 0.12075 3.45686 33 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 34 2.92530 3.55551 0.12075 3.45686 34 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 35 0.14615 3.34859 2.78130 3.24727 35 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 36 0.14615 3.34859 2.78130 3.24727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 37 2.92530 3.55551 0.12075 3.45686 37 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 38 2.92530 3.55551 0.12075 3.45686 38 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 39 0.14615 3.34859 2.78130 3.24727 39 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 40 3.05675 2.57485 3.10612 0.18390 40 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 41 3.39657 0.13465 3.44756 2.80232 41 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 42 0.14615 3.34859 2.78130 3.24727 42 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 43 3.05675 2.57485 3.10612 0.18390 43 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 44 3.05675 2.57485 3.10612 0.18390 44 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 45 0.14615 3.34859 2.78130 3.24727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01896 3.97506 * 1.46634 0.26236 0.00000 * //