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date Tue, 24 Mar 2015 12:02:48 -0400
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HMMER3/b [3.0 | March 2010]
NAME  3_End_Rhizaria_58S_end_eight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 15:33:02 2012
NSEQ  2
EFFN  2.000000
CKSUM 1899220078
STATS LOCAL MSV       -7.5314  0.72773
STATS LOCAL VITERBI   -8.2053  0.72773
STATS LOCAL FORWARD   -3.4398  0.72773
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39561  1.53003  1.21055  1.43652
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   0.23862  2.84929  2.43386  2.70756      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   0.23862  2.84929  2.43386  2.70756     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.53331  3.02441  0.20344  2.88069     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.53331  3.02441  0.20344  2.88069     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.53331  3.02441  0.20344  2.88069     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Rhizaria_58S_end_five_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 15:32:14 2012
NSEQ  44
EFFN  3.789307
CKSUM 2492145104
STATS LOCAL MSV       -6.9952  0.71932
STATS LOCAL VITERBI   -7.7147  0.71932
STATS LOCAL FORWARD   -4.1076  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.52743  1.25061  1.45063  1.33883
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  0.00000        *
      1   0.12490  3.51867  2.89120  3.43374      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
      2   3.23058  2.68521  3.27322  0.15739      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
      3   3.04180  3.72624  0.10307  3.64571      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
      4   3.59175  0.11278  3.63422  2.94315      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
      5   0.12490  3.51867  2.89120  3.43374      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
      6   0.14815  3.42758  2.66373  3.33692      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
      7   0.12490  3.51867  2.89120  3.43374      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
      8   3.23058  2.68521  3.27322  0.15739      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
      9   2.82736  1.80315  2.88647  0.32812      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     10   3.04180  3.72624  0.10307  3.64571     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     11   3.59175  0.11278  3.63422  2.94315     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     12   3.04180  3.72624  0.10307  3.64571     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     13   3.59175  0.11278  3.63422  2.94315     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     14   3.59175  0.11278  3.63422  2.94315     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     15   3.04180  3.72624  0.10307  3.64571     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     16   3.59175  0.11278  3.63422  2.94315     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     17   2.50841  1.08668  2.57840  0.68246     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     18   0.12490  3.51867  2.89120  3.43374     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     19   3.04180  3.72624  0.10307  3.64571     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     20   1.90623  0.38196  2.63636  2.33078     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     21   3.59175  0.11278  3.63422  2.94315     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     22   2.80206  3.62415  0.12382  3.53678     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     23   2.80142  3.62384  0.12389  3.53646     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     24   3.59175  0.11278  3.63422  2.94315     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     25   0.12490  3.51867  2.89120  3.43374     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     26   3.23058  2.68521  3.27322  0.15739     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     27   3.04180  3.72624  0.10307  3.64571     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     28   3.59175  0.11278  3.63422  2.94315     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     29   3.23058  2.68521  3.27322  0.15739     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     30   3.23058  2.68521  3.27322  0.15739     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     31   3.59175  0.11278  3.63422  2.94315     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     32   3.59175  0.11278  3.63422  2.94315     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     33   3.23058  2.68521  3.27322  0.15739     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     34   3.23058  2.68521  3.27322  0.15739     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     35   3.04180  3.72624  0.10307  3.64571     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     36   0.12490  3.51867  2.89120  3.43374     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     37   3.04180  3.72624  0.10307  3.64571     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     38   0.12490  3.51867  2.89120  3.43374     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     39   0.12490  3.51867  2.89120  3.43374     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     40   3.46796  0.13776  3.51501  2.69173     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     41   2.93556  0.30373  2.99948  1.83868     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     42   3.23058  2.68521  3.27322  0.15739     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     43   3.23058  2.68521  3.27322  0.15739     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     44   1.78643  2.34733  2.54280  0.41829     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
     45   3.23058  2.68521  3.27322  0.15739     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01713  4.07572        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Rhizaria_58S_end_four_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 15:32:04 2012
NSEQ  2
EFFN  2.000000
CKSUM 2834967617
STATS LOCAL MSV       -7.4096  0.72847
STATS LOCAL VITERBI   -8.2704  0.72847
STATS LOCAL FORWARD   -3.1984  0.72847
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.73203  1.50350  1.26657  1.14279
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   0.23862  2.84929  2.43386  2.70756      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Rhizaria_58S_end_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 15:31:41 2012
NSEQ  11
EFFN  3.300537
CKSUM 3132885964
STATS LOCAL MSV       -8.1322  0.71932
STATS LOCAL VITERBI   -7.7747  0.71932
STATS LOCAL FORWARD   -3.9845  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.06390  1.19196  1.27025  1.24252
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  0.00000        *
      1   2.94256  3.58053  0.11795  3.48445      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
      2   3.42491  0.13119  3.47471  2.82302      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
      3   3.08143  2.59057  3.12986  0.17984      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
      4   3.42491  0.13119  3.47471  2.82302      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
      5   3.42491  0.13119  3.47471  2.82302      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
      6   2.94256  3.58053  0.11795  3.48445      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
      7   3.08143  2.59057  3.12986  0.17984      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
      8   0.14284  3.37315  2.79730  3.27414      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
      9   2.94256  3.58053  0.11795  3.48445      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     10   2.94256  3.58053  0.11795  3.48445     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     11   3.08143  2.59057  3.12986  0.17984     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     12   2.94256  3.58053  0.11795  3.48445     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     13   3.08143  2.59057  3.12986  0.17984     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     14   3.42491  0.13119  3.47471  2.82302     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     15   3.42491  0.13119  3.47471  2.82302     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     16   3.42491  0.13119  3.47471  2.82302     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     17   3.42491  0.13119  3.47471  2.82302     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     18   3.08143  2.59057  3.12986  0.17984     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     19   3.08143  2.59057  3.12986  0.17984     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     20   2.94256  3.58053  0.11795  3.48445     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     21   2.94256  3.58053  0.11795  3.48445     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     22   0.14284  3.37315  2.79730  3.27414     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     23   2.94256  3.58053  0.11795  3.48445     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     24   3.42491  0.13119  3.47471  2.82302     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     25   0.14284  3.37315  2.79730  3.27414     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     26   3.08143  2.59057  3.12986  0.17984     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     27   2.94256  3.58053  0.11795  3.48445     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     28   3.42491  0.13119  3.47471  2.82302     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     29   3.42491  0.13119  3.47471  2.82302     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     30   3.08143  2.59057  3.12986  0.17984     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     31   3.42491  0.13119  3.47471  2.82302     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     32   3.42491  0.13119  3.47471  2.82302     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     33   3.08143  2.59057  3.12986  0.17984     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     34   3.08143  2.59057  3.12986  0.17984     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     35   3.42491  0.13119  3.47471  2.82302     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     36   0.14284  3.37315  2.79730  3.27414     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     37   2.94256  3.58053  0.11795  3.48445     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     38   3.08143  2.59057  3.12986  0.17984     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     39   2.94256  3.58053  0.11795  3.48445     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     40   3.08143  2.59057  3.12986  0.17984     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     41   3.42491  0.13119  3.47471  2.82302     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     42   2.94256  3.58053  0.11795  3.48445     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     43   3.08143  2.59057  3.12986  0.17984     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     44   2.60420  2.95771  0.24740  2.37221     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
     45   3.08143  2.59057  3.12986  0.17984     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01869  3.98908        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Rhizaria_58S_end_seven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 15:32:29 2012
NSEQ  2
EFFN  2.000000
CKSUM 1282913076
STATS LOCAL MSV       -7.6189  0.72738
STATS LOCAL VITERBI   -8.4211  0.72738
STATS LOCAL FORWARD   -3.5871  0.72738
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.18710  1.48221  1.25579  1.69877
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   0.23862  2.84929  2.43386  2.70756      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   0.23862  2.84929  2.43386  2.70756     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.23862  2.84929  2.43386  2.70756     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.81865  0.23582  2.88868  2.35662     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Rhizaria_58S_end_six_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 15:32:22 2012
NSEQ  2
EFFN  2.000000
CKSUM 1451329582
STATS LOCAL MSV       -7.5458  0.72716
STATS LOCAL VITERBI   -8.4016  0.72716
STATS LOCAL FORWARD   -3.3619  0.72716
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39238  1.54778  1.06991  1.63088
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   0.23862  2.84929  2.43386  2.70756     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.23862  2.84929  2.43386  2.70756     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.53331  3.02441  0.20344  2.88069     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.81865  0.23582  2.88868  2.35662     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Rhizaria_58S_end_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 15:31:56 2012
NSEQ  17
EFFN  3.830811
CKSUM 1105590603
STATS LOCAL MSV       -7.0323  0.71931
STATS LOCAL VITERBI   -7.7236  0.71931
STATS LOCAL FORWARD   -4.0046  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.67592  1.39884  1.36030  1.17313
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  0.00000        *
      1   3.60462  0.11149  3.64650  2.95231      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
      2   3.04933  3.73739  0.10202  3.65808      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
      3   3.13157  0.22889  3.19022  2.12218      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
      4   3.24239  2.69270  3.28457  0.15575      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
      5   3.24239  2.69270  3.28457  0.15575      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
      6   2.50122  1.00748  2.57173  0.74134      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
      7   3.60462  0.11149  3.64650  2.95231      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
      8   3.04933  3.73739  0.10202  3.65808      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
      9   0.12362  3.52998  2.89846  3.44617      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     10   3.04933  3.73739  0.10202  3.65808     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     11   0.12362  3.52998  2.89846  3.44617     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     12   3.24239  2.69270  3.28457  0.15575     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     13   0.12362  3.52998  2.89846  3.44617     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     14   2.50122  1.00748  2.57173  0.74134     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     15   3.60462  0.11149  3.64650  2.95231     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     16   3.60462  0.11149  3.64650  2.95231     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     17   3.24239  2.69270  3.28457  0.15575     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     18   3.24239  2.69270  3.28457  0.15575     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     19   3.04933  3.73739  0.10202  3.65808     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     20   0.77230  2.60186  0.97173  2.45942     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     21   0.12362  3.52998  2.89846  3.44617     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     22   0.12362  3.52998  2.89846  3.44617     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     23   3.04933  3.73739  0.10202  3.65808     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     24   3.60462  0.11149  3.64650  2.95231     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     25   0.12362  3.52998  2.89846  3.44617     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     26   3.24239  2.69270  3.28457  0.15575     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     27   3.04933  3.73739  0.10202  3.65808     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     28   3.60462  0.11149  3.64650  2.95231     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     29   3.60462  0.11149  3.64650  2.95231     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     30   3.24239  2.69270  3.28457  0.15575     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     31   3.60462  0.11149  3.64650  2.95231     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     32   3.24239  2.69270  3.28457  0.15575     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     33   3.24239  2.69270  3.28457  0.15575     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     34   3.24239  2.69270  3.28457  0.15575     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     35   3.04933  3.73739  0.10202  3.65808     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     36   0.12362  3.52998  2.89846  3.44617     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     37   3.04933  3.73739  0.10202  3.65808     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     38   3.24239  2.69270  3.28457  0.15575     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     39   2.26733  3.33268  0.19735  3.22358     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     40   3.24239  2.69270  3.28457  0.15575     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     41   3.60462  0.11149  3.64650  2.95231     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     42   3.04933  3.73739  0.10202  3.65808     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     43   3.04933  3.73739  0.10202  3.65808     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     44   3.24239  2.69270  3.28457  0.15575     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
     45   3.24239  2.69270  3.28457  0.15575     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01700  4.08275        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Rhizaria_58S_end_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 15:31:48 2012
NSEQ  17
EFFN  3.249756
CKSUM 3604078727
STATS LOCAL MSV       -8.1048  0.71933
STATS LOCAL VITERBI   -7.9622  0.71933
STATS LOCAL FORWARD   -4.0599  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.73670  1.25612  1.25633  1.36866
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  0.00000        *
      1   2.93097  3.56372  0.11982  3.46591      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
      2   3.40585  0.13351  3.45646  2.80911      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
      3   2.93097  3.56372  0.11982  3.46591      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
      4   3.40585  0.13351  3.45646  2.80911      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
      5   3.06482  2.58000  3.11388  0.18256      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
      6   3.06482  2.58000  3.11388  0.18256      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
      7   3.06482  2.58000  3.11388  0.18256      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
      8   3.40585  0.13351  3.45646  2.80911      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
      9   2.93097  3.56372  0.11982  3.46591      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     10   0.23441  2.58428  2.59978  2.82642     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     11   2.93097  3.56372  0.11982  3.46591     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     12   0.14506  3.35663  2.78655  3.25606     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     13   2.93097  3.56372  0.11982  3.46591     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     14   3.40585  0.13351  3.45646  2.80911     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     15   3.40585  0.13351  3.45646  2.80911     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     16   3.40585  0.13351  3.45646  2.80911     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     17   3.06482  2.58000  3.11388  0.18256     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     18   3.40585  0.13351  3.45646  2.80911     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     19   2.93097  3.56372  0.11982  3.46591     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     20   2.93097  3.56372  0.11982  3.46591     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     21   0.14506  3.35663  2.78655  3.25606     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     22   0.14506  3.35663  2.78655  3.25606     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     23   2.93097  3.56372  0.11982  3.46591     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     24   3.40585  0.13351  3.45646  2.80911     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     25   0.14506  3.35663  2.78655  3.25606     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     26   3.06482  2.58000  3.11388  0.18256     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     27   2.93097  3.56372  0.11982  3.46591     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     28   3.40585  0.13351  3.45646  2.80911     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     29   3.40585  0.13351  3.45646  2.80911     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     30   3.06482  2.58000  3.11388  0.18256     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     31   3.40585  0.13351  3.45646  2.80911     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     32   3.06482  2.58000  3.11388  0.18256     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     33   3.40585  0.13351  3.45646  2.80911     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     34   3.06482  2.58000  3.11388  0.18256     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     35   2.93097  3.56372  0.11982  3.46591     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     36   0.14506  3.35663  2.78655  3.25606     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     37   2.93097  3.56372  0.11982  3.46591     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     38   3.06482  2.58000  3.11388  0.18256     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     39   0.14506  3.35663  2.78655  3.25606     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     40   3.06482  2.58000  3.11388  0.18256     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     41   3.40585  0.13351  3.45646  2.80911     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     42   2.93097  3.56372  0.11982  3.46591     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     43   2.93097  3.56372  0.11982  3.46591     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     44   3.06482  2.58000  3.11388  0.18256     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
     45   3.06482  2.58000  3.11388  0.18256     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01887  3.97964        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhizaria_58S_start_eleven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 02:11:53 2012
NSEQ  31
EFFN  3.379272
CKSUM 2165802544
STATS LOCAL MSV       -7.4242  0.71932
STATS LOCAL VITERBI   -7.6170  0.71932
STATS LOCAL FORWARD   -4.3017  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.55729  1.52929  1.25161  1.24981
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  0.00000        *
      1   2.97916  2.30506  3.03127  0.22170      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
      2   3.45378  0.12777  3.50236  2.84402      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
      3   3.10676  2.60668  3.15422  0.17578      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
      4   2.96001  3.60594  0.11519  3.51250      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
      5   0.13955  3.39821  2.81357  3.30158      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
      6   2.96001  3.60594  0.11519  3.51250      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
      7   2.96001  3.60594  0.11519  3.51250      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
      8   3.45378  0.12777  3.50236  2.84402      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
      9   3.10676  2.60668  3.15422  0.17578      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     10   3.10676  2.60668  3.15422  0.17578     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     11   3.45378  0.12777  3.50236  2.84402     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     12   0.13955  3.39821  2.81357  3.30158     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     13   3.10676  2.60668  3.15422  0.17578     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     14   0.13955  3.39821  2.81357  3.30158     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     15   0.13955  3.39821  2.81357  3.30158     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     16   0.13955  3.39821  2.81357  3.30158     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     17   3.45378  0.12777  3.50236  2.84402     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     18   3.10676  2.60668  3.15422  0.17578     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     19   2.96001  3.60594  0.11519  3.51250     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     20   3.29555  0.16300  3.34900  2.54800     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     21   0.13955  3.39821  2.81357  3.30158     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     22   2.96001  3.60594  0.11519  3.51250     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     23   3.45378  0.12777  3.50236  2.84402     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     24   2.96001  3.60594  0.11519  3.51250     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     25   3.10676  2.60668  3.15422  0.17578     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     26   2.96001  3.60594  0.11519  3.51250     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     27   3.45378  0.12777  3.50236  2.84402     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     28   3.10676  2.60668  3.15422  0.17578     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     29   3.45378  0.12777  3.50236  2.84402     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     30   2.96001  3.60594  0.11519  3.51250     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     31   2.96001  3.60594  0.11519  3.51250     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     32   3.10676  2.60668  3.15422  0.17578     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     33   3.10676  2.60668  3.15422  0.17578     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     34   2.61246  3.43529  0.15231  3.33228     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     35   0.19383  3.12524  2.69152  2.74111     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     36   2.96001  3.60594  0.11519  3.51250     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     37   3.10676  2.60668  3.15422  0.17578     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     38   2.96001  3.60594  0.11519  3.51250     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     39   3.10676  2.60668  3.15422  0.17578     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     40   2.96001  3.60594  0.11519  3.51250     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     41   3.45378  0.12777  3.50236  2.84402     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     42   0.19602  3.19941  2.38831  3.09154     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     43   3.10676  2.60668  3.15422  0.17578     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     44   3.10676  2.60668  3.15422  0.17578     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
     45   0.13955  3.39821  2.81357  3.30158     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01842  4.00356        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhizaria_58S_start_five_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 14:39:29 2012
NSEQ  40
EFFN  3.432617
CKSUM 3346258546
STATS LOCAL MSV       -7.6747  0.71933
STATS LOCAL VITERBI   -7.7146  0.71933
STATS LOCAL FORWARD   -4.2191  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.21566  1.45905  1.43705  1.45500
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  0.00000        *
      1   1.71916  2.27454  2.44490  0.46013      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
      2   3.47289  0.12556  3.52064  2.85787      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
      3   0.13742  3.41482  2.82432  3.31978      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
      4   0.31690  2.91014  1.86199  2.78440      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
      5   3.12363  2.61740  3.17044  0.17313      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
      6   3.47289  0.12556  3.52064  2.85787      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
      7   3.12363  2.61740  3.17044  0.17313      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
      8   3.12363  2.61740  3.17044  0.17313      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
      9   3.03573  2.40304  3.08573  0.20356      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     10   2.97148  3.62270  0.11341  3.53103     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     11   3.47289  0.12556  3.52064  2.85787     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     12   0.13742  3.41482  2.82432  3.31978     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     13   0.13742  3.41482  2.82432  3.31978     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     14   3.12363  2.61740  3.17044  0.17313     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     15   2.97148  3.62270  0.11341  3.53103     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     16   2.97148  3.62270  0.11341  3.53103     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     17   0.13742  3.41482  2.82432  3.31978     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     18   3.12363  2.61740  3.17044  0.17313     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     19   2.97148  3.62270  0.11341  3.53103     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     20   0.13742  3.41482  2.82432  3.31978     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     21   3.47289  0.12556  3.52064  2.85787     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     22   3.12363  2.61740  3.17044  0.17313     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     23   0.13742  3.41482  2.82432  3.31978     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     24   2.97148  3.62270  0.11341  3.53103     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     25   2.97148  3.62270  0.11341  3.53103     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     26   3.47289  0.12556  3.52064  2.85787     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     27   3.12363  2.61740  3.17044  0.17313     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     28   3.47289  0.12556  3.52064  2.85787     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     29   3.12363  2.61740  3.17044  0.17313     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     30   3.47289  0.12556  3.52064  2.85787     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     31   2.97148  3.62270  0.11341  3.53103     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     32   3.47289  0.12556  3.52064  2.85787     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     33   0.13742  3.41482  2.82432  3.31978     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     34   0.13742  3.41482  2.82432  3.31978     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     35   3.32901  0.15694  3.38130  2.58484     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     36   2.97148  3.62270  0.11341  3.53103     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     37   0.13742  3.41482  2.82432  3.31978     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     38   3.12363  2.61740  3.17044  0.17313     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     39   2.97148  3.62270  0.11341  3.53103     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     40   0.13742  3.41482  2.82432  3.31978     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     41   0.13742  3.41482  2.82432  3.31978     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     42   2.97148  3.62270  0.11341  3.53103     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     43   0.13742  3.41482  2.82432  3.31978     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     44   0.13742  3.41482  2.82432  3.31978     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
     45   3.47289  0.12556  3.52064  2.85787     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01824  4.01325        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhizaria_58S_start_four_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 14:39:22 2012
NSEQ  21
EFFN  3.222290
CKSUM 1508263825
STATS LOCAL MSV       -8.2708  0.71933
STATS LOCAL VITERBI   -7.7088  0.71933
STATS LOCAL FORWARD   -4.2457  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.21645  1.46650  1.37607  1.51223
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  0.00000        *
      1   0.14629  3.34758  2.78064  3.24617      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
      2   3.39541  0.13480  3.44645  2.80147      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
      3   2.92459  3.55448  0.12087  3.45573      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
      4   0.14629  3.34758  2.78064  3.24617      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
      5   3.05574  2.57421  3.10514  0.18407      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
      6   3.39541  0.13480  3.44645  2.80147      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
      7   3.05574  2.57421  3.10514  0.18407      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
      8   3.05574  2.57421  3.10514  0.18407      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
      9   3.05574  2.57421  3.10514  0.18407      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     10   2.92459  3.55448  0.12087  3.45573     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     11   3.39541  0.13480  3.44645  2.80147     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     12   0.14629  3.34758  2.78064  3.24617     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     13   0.14629  3.34758  2.78064  3.24617     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     14   3.05574  2.57421  3.10514  0.18407     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     15   2.92459  3.55448  0.12087  3.45573     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     16   2.92459  3.55448  0.12087  3.45573     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     17   0.14629  3.34758  2.78064  3.24617     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     18   3.05574  2.57421  3.10514  0.18407     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     19   2.92459  3.55448  0.12087  3.45573     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     20   0.14629  3.34758  2.78064  3.24617     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     21   3.39541  0.13480  3.44645  2.80147     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     22   3.05574  2.57421  3.10514  0.18407     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     23   0.14629  3.34758  2.78064  3.24617     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     24   2.92459  3.55448  0.12087  3.45573     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     25   2.92459  3.55448  0.12087  3.45573     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     26   3.39541  0.13480  3.44645  2.80147     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     27   3.05574  2.57421  3.10514  0.18407     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     28   3.39541  0.13480  3.44645  2.80147     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     29   3.05574  2.57421  3.10514  0.18407     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     30   3.39541  0.13480  3.44645  2.80147     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     31   2.92459  3.55448  0.12087  3.45573     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     32   3.39541  0.13480  3.44645  2.80147     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     33   0.14629  3.34758  2.78064  3.24617     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     34   0.14629  3.34758  2.78064  3.24617     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     35   3.39541  0.13480  3.44645  2.80147     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     36   2.92459  3.55448  0.12087  3.45573     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     37   0.14629  3.34758  2.78064  3.24617     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     38   3.05574  2.57421  3.10514  0.18407     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     39   2.92459  3.55448  0.12087  3.45573     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     40   0.14629  3.34758  2.78064  3.24617     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     41   0.14629  3.34758  2.78064  3.24617     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     42   2.92459  3.55448  0.12087  3.45573     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     43   0.14629  3.34758  2.78064  3.24617     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     44   0.14629  3.34758  2.78064  3.24617     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
     45   3.39541  0.13480  3.44645  2.80147     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01897  3.97449        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhizaria_58S_start_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 14:39:00 2012
NSEQ  12
EFFN  3.301758
CKSUM 1440402788
STATS LOCAL MSV       -8.1666  0.71931
STATS LOCAL VITERBI   -7.6903  0.71931
STATS LOCAL FORWARD   -3.9835  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33353  1.43330  1.24691  1.55806
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  0.00000        *
      1   2.41922  0.77428  2.49183  1.00180      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      2   2.94283  3.58093  0.11791  3.48489      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      3   0.14279  3.37354  2.79756  3.27457      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      4   3.42536  0.13114  3.47515  2.82335      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      5   3.42536  0.13114  3.47515  2.82335      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      6   3.42536  0.13114  3.47515  2.82335      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      7   3.08183  2.59083  3.13024  0.17977      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      8   3.08183  2.59083  3.13024  0.17977      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      9   0.14279  3.37354  2.79756  3.27457      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     10   2.94283  3.58093  0.11791  3.48489     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     11   3.42536  0.13114  3.47515  2.82335     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     12   2.94283  3.58093  0.11791  3.48489     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     13   0.14279  3.37354  2.79756  3.27457     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     14   0.14279  3.37354  2.79756  3.27457     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     15   2.94283  3.58093  0.11791  3.48489     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     16   2.94283  3.58093  0.11791  3.48489     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     17   0.14279  3.37354  2.79756  3.27457     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     18   3.08183  2.59083  3.13024  0.17977     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     19   2.94283  3.58093  0.11791  3.48489     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     20   3.08183  2.59083  3.13024  0.17977     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     21   3.42536  0.13114  3.47515  2.82335     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     22   3.08183  2.59083  3.13024  0.17977     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     23   3.08183  2.59083  3.13024  0.17977     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     24   2.94283  3.58093  0.11791  3.48489     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     25   2.94283  3.58093  0.11791  3.48489     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     26   3.08183  2.59083  3.13024  0.17977     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     27   3.08183  2.59083  3.13024  0.17977     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     28   3.42536  0.13114  3.47515  2.82335     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     29   3.42536  0.13114  3.47515  2.82335     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     30   2.94283  3.58093  0.11791  3.48489     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     31   2.94283  3.58093  0.11791  3.48489     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     32   3.42536  0.13114  3.47515  2.82335     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     33   0.14279  3.37354  2.79756  3.27457     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     34   0.14279  3.37354  2.79756  3.27457     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     35   3.42536  0.13114  3.47515  2.82335     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     36   2.94283  3.58093  0.11791  3.48489     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     37   0.14279  3.37354  2.79756  3.27457     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     38   3.08183  2.59083  3.13024  0.17977     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     39   2.94283  3.58093  0.11791  3.48489     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     40   0.14279  3.37354  2.79756  3.27457     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     41   0.14279  3.37354  2.79756  3.27457     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     42   2.94283  3.58093  0.11791  3.48489     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     43   0.14279  3.37354  2.79756  3.27457     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     44   0.14279  3.37354  2.79756  3.27457     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     45   3.42536  0.13114  3.47515  2.82335     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01869  3.98931        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhizaria_58S_start_seven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 14:39:42 2012
NSEQ  2
EFFN  2.000000
CKSUM 3286888011
STATS LOCAL MSV       -7.5161  0.72833
STATS LOCAL VITERBI   -8.2412  0.72833
STATS LOCAL FORWARD   -3.6122  0.72833
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33870  1.58592  1.37006  1.27668
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhizaria_58S_start_six_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 14:39:35 2012
NSEQ  6
EFFN  3.348633
CKSUM 2591723296
STATS LOCAL MSV       -8.3005  0.71933
STATS LOCAL VITERBI   -7.5976  0.71933
STATS LOCAL FORWARD   -4.2781  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.36916  1.46090  1.28717  1.43716
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  0.00000        *
      1   0.14081  3.38854  2.80730  3.29098      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
      2   0.14081  3.38854  2.80730  3.29098      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
      3   0.14081  3.38854  2.80730  3.29098      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
      4   2.95329  3.59614  0.11625  3.50169      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
      5   3.44264  0.12908  3.49169  2.83593      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
      6   3.44264  0.12908  3.49169  2.83593      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
      7   3.09697  2.60046  3.14480  0.17734      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
      8   3.09697  2.60046  3.14480  0.17734      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
      9   2.95329  3.59614  0.11625  3.50169      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     10   3.44264  0.12908  3.49169  2.83593     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     11   3.09697  2.60046  3.14480  0.17734     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     12   2.95329  3.59614  0.11625  3.50169     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     13   0.14081  3.38854  2.80730  3.29098     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     14   3.44264  0.12908  3.49169  2.83593     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     15   2.95329  3.59614  0.11625  3.50169     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     16   2.95329  3.59614  0.11625  3.50169     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     17   0.14081  3.38854  2.80730  3.29098     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     18   3.09697  2.60046  3.14480  0.17734     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     19   2.95329  3.59614  0.11625  3.50169     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     20   3.09697  2.60046  3.14480  0.17734     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     21   3.44264  0.12908  3.49169  2.83593     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     22   3.09697  2.60046  3.14480  0.17734     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     23   0.14081  3.38854  2.80730  3.29098     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     24   2.95329  3.59614  0.11625  3.50169     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     25   2.95329  3.59614  0.11625  3.50169     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     26   3.44264  0.12908  3.49169  2.83593     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     27   3.09697  2.60046  3.14480  0.17734     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     28   3.44264  0.12908  3.49169  2.83593     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     29   3.09697  2.60046  3.14480  0.17734     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     30   3.09697  2.60046  3.14480  0.17734     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     31   2.95329  3.59614  0.11625  3.50169     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     32   3.44264  0.12908  3.49169  2.83593     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     33   0.86047  2.51955  0.90766  2.37434     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     34   3.09697  2.60046  3.14480  0.17734     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     35   3.44264  0.12908  3.49169  2.83593     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     36   2.95329  3.59614  0.11625  3.50169     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     37   0.14081  3.38854  2.80730  3.29098     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     38   3.09697  2.60046  3.14480  0.17734     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     39   2.95329  3.59614  0.11625  3.50169     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     40   0.14081  3.38854  2.80730  3.29098     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     41   0.14081  3.38854  2.80730  3.29098     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     42   2.95329  3.59614  0.11625  3.50169     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     43   0.14081  3.38854  2.80730  3.29098     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     44   0.14081  3.38854  2.80730  3.29098     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
     45   3.44264  0.12908  3.49169  2.83593     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01852  3.99795        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhizaria_58S_start_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 14:39:14 2012
NSEQ  2
EFFN  2.000000
CKSUM 708669621
STATS LOCAL MSV       -7.6157  0.72839
STATS LOCAL VITERBI   -8.2097  0.72839
STATS LOCAL FORWARD   -3.6198  0.72839
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.18583  1.58669  1.49120  1.32877
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhizaria_58S_start_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 14:39:07 2012
NSEQ  31
EFFN  3.757690
CKSUM 3240878011
STATS LOCAL MSV       -7.2460  0.71932
STATS LOCAL VITERBI   -7.7295  0.71932
STATS LOCAL FORWARD   -4.3227  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.16412  1.39048  1.62656  1.41782
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  0.00000        *
      1   3.58181  0.11379  3.62473  2.93607      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
      2   0.12590  3.50995  2.88560  3.42416      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
      3   0.12590  3.50995  2.88560  3.42416      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
      4   3.58181  0.11379  3.62473  2.93607      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
      5   3.22150  2.67945  3.26449  0.15866      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
      6   3.58181  0.11379  3.62473  2.93607      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
      7   3.22150  2.67945  3.26449  0.15866      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
      8   3.22150  2.67945  3.26449  0.15866      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
      9   0.12590  3.50995  2.88560  3.42416      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     10   1.78111  2.99185  0.32259  2.86322     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     11   3.58181  0.11379  3.62473  2.93607     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     12   0.12590  3.50995  2.88560  3.42416     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     13   0.34060  2.91802  1.75258  2.79211     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     14   3.22150  2.67945  3.26449  0.15866     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     15   1.66599  2.91709  0.36359  2.78503     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     16   3.03598  3.71764  0.10389  3.63616     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     17   0.12590  3.50995  2.88560  3.42416     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     18   3.22150  2.67945  3.26449  0.15866     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     19   0.12590  3.50995  2.88560  3.42416     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     20   3.22150  2.67945  3.26449  0.15866     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     21   3.58181  0.11379  3.62473  2.93607     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     22   3.22150  2.67945  3.26449  0.15866     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     23   3.22150  2.67945  3.26449  0.15866     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     24   3.03598  3.71764  0.10389  3.63616     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     25   3.03598  3.71764  0.10389  3.63616     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     26   3.11416  2.40862  3.16158  0.19445     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     27   3.22150  2.67945  3.26449  0.15866     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     28   3.58181  0.11379  3.62473  2.93607     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     29   2.89669  0.32029  2.96150  1.78907     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     30   3.58181  0.11379  3.62473  2.93607     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     31   0.42036  2.79880  1.54738  2.66644     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     32   3.58181  0.11379  3.62473  2.93607     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     33   0.12590  3.50995  2.88560  3.42416     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     34   0.12590  3.50995  2.88560  3.42416     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     35   3.58181  0.11379  3.62473  2.93607     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     36   3.03598  3.71764  0.10389  3.63616     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     37   0.12590  3.50995  2.88560  3.42416     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     38   3.22150  2.67945  3.26449  0.15866     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     39   3.03598  3.71764  0.10389  3.63616     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     40   0.12590  3.50995  2.88560  3.42416     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     41   0.12590  3.50995  2.88560  3.42416     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     42   3.03598  3.71764  0.10389  3.63616     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     43   0.12590  3.50995  2.88560  3.42416     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     44   0.12590  3.50995  2.88560  3.42416     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03415  4.08727  4.08727  1.46634  0.26236  1.09861  0.40547
     45   3.58181  0.11379  3.62473  2.93607     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01722  4.07034        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhizaria_58S_start_sevenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 01:37:55 2012
NSEQ  2
EFFN  2.000000
CKSUM 936571363
STATS LOCAL MSV       -7.4273  0.72954
STATS LOCAL VITERBI   -8.2698  0.72954
STATS LOCAL FORWARD   -3.3835  0.72954
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.21521  1.42509  1.55460  1.37996
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.15554  1.00938  2.23102  0.88601     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   1.03732  1.95876  1.96551  1.00928     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhizaria_58S_start_ten_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 01:38:08 2012
NSEQ  221
EFFN  3.469986
CKSUM 3178722947
STATS LOCAL MSV       -7.3549  0.71932
STATS LOCAL VITERBI   -7.7369  0.71932
STATS LOCAL FORWARD   -4.0992  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63448  1.53575  1.24649  1.19687
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  0.00000        *
      1   0.18763  2.92286  2.65754  3.05390      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
      2   2.69988  0.30745  2.22941  2.40931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
      3   3.13531  2.62481  3.18166  0.17133      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
      4   2.86894  3.58577  0.12204  3.49300      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
      5   3.48606  0.12407  3.53324  2.86739      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
      6   0.14975  3.37268  2.70284  3.27630      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
      7   3.13531  2.62481  3.18166  0.17133      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
      8   2.97936  3.63424  0.11220  3.54379      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
      9   0.14692  3.38343  2.72774  3.28763      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     10   2.97936  3.63424  0.11220  3.54379     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     11   3.48606  0.12407  3.53324  2.86739     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     12   2.97936  3.63424  0.11220  3.54379     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     13   0.13597  3.42628  2.83173  3.33234     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     14   3.13531  2.62481  3.18166  0.17133     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     15   2.97936  3.63424  0.11220  3.54379     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     16   2.97936  3.63424  0.11220  3.54379     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     17   0.13597  3.42628  2.83173  3.33234     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     18   3.13531  2.62481  3.18166  0.17133     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     19   3.45123  0.12635  3.51748  2.85927     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     20   3.13531  2.62481  3.18166  0.17133     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     21   3.48606  0.12407  3.53324  2.86739     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     22   3.08717  2.50341  3.13523  0.18745     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     23   3.13531  2.62481  3.18166  0.17133     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     24   2.97936  3.63424  0.11220  3.54379     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     25   2.86894  3.58577  0.12204  3.49300     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     26   3.03546  2.58700  2.95945  0.19255     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     27   3.13531  2.62481  3.18166  0.17133     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03832  4.03777  3.91395  1.46634  0.26236  1.09861  0.40547
     28   3.48143  0.12459  3.52882  2.86404     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03600  4.03544  4.03544  1.46634  0.26236  1.01779  0.44846
     29   3.48606  0.12407  3.53324  2.86739     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     30   3.09673  2.52680  3.14443  0.18417     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     31   3.09210  2.51544  3.13998  0.18575     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     32   2.97936  3.63424  0.11220  3.54379     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     33   3.48606  0.12407  3.53324  2.86739     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     34   0.13597  3.42628  2.83173  3.33234     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     35   3.13531  2.62481  3.18166  0.17133     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     36   3.48606  0.12407  3.53324  2.86739     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     37   2.97936  3.63424  0.11220  3.54379     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     38   3.09579  2.52447  3.14352  0.18449     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     39   3.13531  2.62481  3.18166  0.17133     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     40   2.86894  3.58577  0.12204  3.49300     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     41   0.13597  3.42628  2.83173  3.33234     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     42   0.14692  3.38343  2.72774  3.28763     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     43   2.97936  3.63424  0.11220  3.54379     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     44   2.97936  3.63424  0.11220  3.54379     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
     45   3.09579  2.52447  3.14352  0.18449     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01812  4.01998        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Rhizaria_58S_start_twelve_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 01:38:58 2012
NSEQ  14
EFFN  3.291504
CKSUM 1264888513
STATS LOCAL MSV       -7.9360  0.71932
STATS LOCAL VITERBI   -7.7626  0.71932
STATS LOCAL FORWARD   -4.0675  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.62979  1.52617  1.25455  1.19912
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  0.00000        *
      1   0.14323  3.37023  2.79540  3.27094      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
      2   3.42154  0.13160  3.47149  2.82057      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
      3   3.07849  2.58870  3.12703  0.18032      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
      4   2.94052  3.57756  0.11828  3.48118      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
      5   3.42154  0.13160  3.47149  2.82057      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
      6   0.14323  3.37023  2.79540  3.27094      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
      7   3.07849  2.58870  3.12703  0.18032      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
      8   2.94052  3.57756  0.11828  3.48118      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
      9   0.14323  3.37023  2.79540  3.27094      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     10   2.94052  3.57756  0.11828  3.48118     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     11   3.42154  0.13160  3.47149  2.82057     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     12   2.94052  3.57756  0.11828  3.48118     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     13   0.14323  3.37023  2.79540  3.27094     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     14   3.07849  2.58870  3.12703  0.18032     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     15   2.94052  3.57756  0.11828  3.48118     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     16   2.94052  3.57756  0.11828  3.48118     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     17   0.14323  3.37023  2.79540  3.27094     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     18   3.07849  2.58870  3.12703  0.18032     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     19   3.42154  0.13160  3.47149  2.82057     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     20   3.07849  2.58870  3.12703  0.18032     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     21   3.42154  0.13160  3.47149  2.82057     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     22   3.07849  2.58870  3.12703  0.18032     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     23   3.07849  2.58870  3.12703  0.18032     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     24   2.94052  3.57756  0.11828  3.48118     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     25   2.94052  3.57756  0.11828  3.48118     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     26   3.07849  2.58870  3.12703  0.18032     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     27   3.07849  2.58870  3.12703  0.18032     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     28   3.42154  0.13160  3.47149  2.82057     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     29   3.42154  0.13160  3.47149  2.82057     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     30   3.07849  2.58870  3.12703  0.18032     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     31   3.07849  2.58870  3.12703  0.18032     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     32   2.94052  3.57756  0.11828  3.48118     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     33   3.42154  0.13160  3.47149  2.82057     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     34   0.14323  3.37023  2.79540  3.27094     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     35   3.07849  2.58870  3.12703  0.18032     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     36   3.42154  0.13160  3.47149  2.82057     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     37   2.94052  3.57756  0.11828  3.48118     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     38   3.07849  2.58870  3.12703  0.18032     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     39   3.07849  2.58870  3.12703  0.18032     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     40   2.94052  3.57756  0.11828  3.48118     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     41   0.14323  3.37023  2.79540  3.27094     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     42   0.14323  3.37023  2.79540  3.27094     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     43   2.94052  3.57756  0.11828  3.48118     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     44   2.94052  3.57756  0.11828  3.48118     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     45   3.07849  2.58870  3.12703  0.18032     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01872  3.98741        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhizaria_4_LSU_start_eight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 15:51:35 2012
NSEQ  3
EFFN  3.000000
CKSUM 1950209703
STATS LOCAL MSV       -8.0821  0.72055
STATS LOCAL VITERBI   -7.8768  0.72055
STATS LOCAL FORWARD   -3.2887  0.72055
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   0.97098  1.50494  1.50771  1.72686
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   0.15719  3.27118  2.73043  3.16274      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   0.15719  3.27118  2.73043  3.16274      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   0.15719  3.27118  2.73043  3.16274      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   0.15719  3.27118  2.73043  3.16274      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.97980  2.52563  3.03204  0.19727     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.97980  2.52563  3.03204  0.19727     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   0.15719  3.27118  2.73043  3.16274     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   0.15719  3.27118  2.73043  3.16274     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.97980  2.52563  3.03204  0.19727     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.43223  0.62271  2.50508  1.22417     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.97980  2.52563  3.03204  0.19727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   3.30705  0.14631  3.36166  2.73626     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   0.15719  3.27118  2.73043  3.16274     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   0.15719  3.27118  2.73043  3.16274     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   0.15719  3.27118  2.73043  3.16274     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.97980  2.52563  3.03204  0.19727     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   0.15719  3.27118  2.73043  3.16274     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.86982  3.47591  0.13017  3.36931     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   0.15719  3.27118  2.73043  3.16274     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   3.30705  0.14631  3.36166  2.73626     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   3.30705  0.14631  3.36166  2.73626     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   3.30705  0.14631  3.36166  2.73626     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.86982  3.47591  0.13017  3.36931     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhizaria_4_LSU_start_five_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 15:48:20 2012
NSEQ  2
EFFN  2.000000
CKSUM 76545263
STATS LOCAL MSV       -7.5144  0.72774
STATS LOCAL VITERBI   -8.3161  0.72774
STATS LOCAL FORWARD   -3.3498  0.72774
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.29057  1.34961  1.37118  1.55242
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   0.23862  2.84929  2.43386  2.70756     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhizaria_4_LSU_start_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 15:47:38 2012
NSEQ  12
EFFN  3.395508
CKSUM 2392704946
STATS LOCAL MSV       -7.3558  0.71933
STATS LOCAL VITERBI   -7.8378  0.71933
STATS LOCAL FORWARD   -3.9627  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.16579  1.72185  1.19494  1.57568
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  0.00000        *
      1   2.25159  2.41497  0.52437  1.54427      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
      2   0.39984  2.76941  1.63350  2.63628      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
      3   3.11192  2.60996  3.15918  0.17496      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
      4   3.11192  2.60996  3.15918  0.17496      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
      5   2.96353  3.61108  0.11464  3.51818      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
      6   0.13889  3.40330  2.81687  3.30715      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
      7   3.45963  0.12709  3.50796  2.84827      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
      8   3.45963  0.12709  3.50796  2.84827      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
      9   3.11192  2.60996  3.15918  0.17496      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     10   2.96353  3.61108  0.11464  3.51818     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     11   0.13889  3.40330  2.81687  3.30715     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     12   0.13889  3.40330  2.81687  3.30715     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     13   2.96353  3.61108  0.11464  3.51818     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     14   3.11192  2.60996  3.15918  0.17496     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     15   2.96353  3.61108  0.11464  3.51818     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     16   0.13889  3.40330  2.81687  3.30715     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     17   2.96353  3.61108  0.11464  3.51818     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     18   2.96353  3.61108  0.11464  3.51818     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     19   3.11192  2.60996  3.15918  0.17496     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     20   0.13889  3.40330  2.81687  3.30715     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     21   0.13889  3.40330  2.81687  3.30715     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     22   2.96353  3.61108  0.11464  3.51818     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     23   0.13889  3.40330  2.81687  3.30715     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     24   2.96353  3.61108  0.11464  3.51818     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     25   2.96353  3.61108  0.11464  3.51818     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     26   0.13889  3.40330  2.81687  3.30715     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     27   3.45963  0.12709  3.50796  2.84827     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     28   3.45963  0.12709  3.50796  2.84827     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     29   2.96353  3.61108  0.11464  3.51818     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     30   2.96353  3.61108  0.11464  3.51818     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     31   3.45963  0.12709  3.50796  2.84827     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     32   3.45963  0.12709  3.50796  2.84827     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     33   2.96353  3.61108  0.11464  3.51818     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     34   0.13889  3.40330  2.81687  3.30715     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     35   0.13889  3.40330  2.81687  3.30715     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     36   3.11192  2.60996  3.15918  0.17496     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     37   3.11192  2.60996  3.15918  0.17496     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     38   3.11192  2.60996  3.15918  0.17496     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     39   0.13889  3.40330  2.81687  3.30715     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     40   0.13889  3.40330  2.81687  3.30715     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     41   2.96353  3.61108  0.11464  3.51818     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     42   3.45963  0.12709  3.50796  2.84827     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     43   0.13889  3.40330  2.81687  3.30715     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     44   3.11192  2.60996  3.15918  0.17496     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
     45   0.13889  3.40330  2.81687  3.30715     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01836  4.00652        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhizaria_4_LSU_start_seven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 15:48:49 2012
NSEQ  2
EFFN  2.000000
CKSUM 3237321859
STATS LOCAL MSV       -7.5995  0.72817
STATS LOCAL VITERBI   -8.1354  0.72817
STATS LOCAL FORWARD   -3.3775  0.72817
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.09658  1.59494  1.48795  1.43871
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   0.23862  2.84929  2.43386  2.70756      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhizaria_4_LSU_start_six_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 15:48:38 2012
NSEQ  2
EFFN  2.000000
CKSUM 403866154
STATS LOCAL MSV       -7.4438  0.72795
STATS LOCAL VITERBI   -8.2841  0.72795
STATS LOCAL FORWARD   -3.4575  0.72795
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40871  1.09677  1.57805  1.53611
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   0.23862  2.84929  2.43386  2.70756     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhizaria_4_LSU_start_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 15:48:01 2012
NSEQ  7
EFFN  3.387207
CKSUM 685879422
STATS LOCAL MSV       -7.6313  0.71931
STATS LOCAL VITERBI   -7.5788  0.71931
STATS LOCAL FORWARD   -4.0483  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.10662  1.52111  1.60238  1.38853
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  0.00000        *
      1   3.10929  2.60829  3.15665  0.17538      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
      2   3.45664  0.12744  3.50510  2.84610      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
      3   3.10929  2.60829  3.15665  0.17538      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
      4   0.13923  3.40070  2.81518  3.30431      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
      5   2.96173  3.60845  0.11492  3.51528      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
      6   0.13923  3.40070  2.81518  3.30431      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
      7   3.10929  2.60829  3.15665  0.17538      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
      8   3.45664  0.12744  3.50510  2.84610      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
      9   3.10929  2.60829  3.15665  0.17538      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     10   3.45664  0.12744  3.50510  2.84610     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     11   0.13923  3.40070  2.81518  3.30431     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     12   0.13923  3.40070  2.81518  3.30431     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     13   0.13923  3.40070  2.81518  3.30431     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     14   3.10929  2.60829  3.15665  0.17538     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     15   2.96173  3.60845  0.11492  3.51528     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     16   0.13923  3.40070  2.81518  3.30431     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     17   2.96173  3.60845  0.11492  3.51528     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     18   2.96173  3.60845  0.11492  3.51528     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     19   3.10929  2.60829  3.15665  0.17538     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     20   0.13923  3.40070  2.81518  3.30431     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     21   0.13923  3.40070  2.81518  3.30431     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     22   2.96173  3.60845  0.11492  3.51528     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     23   0.13923  3.40070  2.81518  3.30431     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     24   3.45664  0.12744  3.50510  2.84610     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     25   3.10929  2.60829  3.15665  0.17538     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     26   0.13923  3.40070  2.81518  3.30431     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     27   3.45664  0.12744  3.50510  2.84610     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     28   3.45664  0.12744  3.50510  2.84610     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     29   3.45664  0.12744  3.50510  2.84610     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     30   2.96173  3.60845  0.11492  3.51528     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     31   3.45664  0.12744  3.50510  2.84610     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     32   3.10929  2.60829  3.15665  0.17538     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     33   2.96173  3.60845  0.11492  3.51528     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     34   0.13923  3.40070  2.81518  3.30431     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     35   0.13923  3.40070  2.81518  3.30431     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     36   2.56748  1.47198  2.63418  0.47478     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     37   3.10929  2.60829  3.15665  0.17538     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     38   3.10929  2.60829  3.15665  0.17538     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     39   0.13923  3.40070  2.81518  3.30431     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     40   0.13923  3.40070  2.81518  3.30431     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     41   2.96173  3.60845  0.11492  3.51528     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     42   3.45664  0.12744  3.50510  2.84610     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     43   0.13923  3.40070  2.81518  3.30431     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     44   3.10929  2.60829  3.15665  0.17538     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
     45   0.13923  3.40070  2.81518  3.30431     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01839  4.00500        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhizaria_4_LSU_start_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 15:47:48 2012
NSEQ  14
EFFN  3.359863
CKSUM 3152799616
STATS LOCAL MSV       -8.0137  0.71932
STATS LOCAL VITERBI   -7.4927  0.71932
STATS LOCAL FORWARD   -4.0641  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.05417  1.49407  1.51699  1.57170
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  0.00000        *
      1   0.14034  3.39209  2.80960  3.29488      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
      2   3.44674  0.12859  3.49562  2.83891      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
      3   0.14034  3.39209  2.80960  3.29488      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
      4   0.14034  3.39209  2.80960  3.29488      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
      5   2.95576  3.59975  0.11586  3.50566      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
      6   0.14034  3.39209  2.80960  3.29488      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
      7   3.10057  2.60274  3.14826  0.17676      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
      8   3.44674  0.12859  3.49562  2.83891      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
      9   3.10057  2.60274  3.14826  0.17676      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     10   3.44674  0.12859  3.49562  2.83891     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     11   0.14034  3.39209  2.80960  3.29488     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     12   2.95576  3.59975  0.11586  3.50566     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     13   0.14034  3.39209  2.80960  3.29488     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     14   3.10057  2.60274  3.14826  0.17676     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     15   2.95576  3.59975  0.11586  3.50566     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     16   0.14034  3.39209  2.80960  3.29488     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     17   2.95576  3.59975  0.11586  3.50566     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     18   2.95576  3.59975  0.11586  3.50566     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     19   3.10057  2.60274  3.14826  0.17676     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     20   0.14034  3.39209  2.80960  3.29488     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     21   0.14034  3.39209  2.80960  3.29488     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     22   2.95576  3.59975  0.11586  3.50566     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     23   0.14034  3.39209  2.80960  3.29488     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     24   2.88818  0.29626  2.95301  1.90684     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     25   3.10057  2.60274  3.14826  0.17676     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     26   0.14034  3.39209  2.80960  3.29488     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     27   3.44674  0.12859  3.49562  2.83891     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     28   3.44674  0.12859  3.49562  2.83891     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     29   3.44674  0.12859  3.49562  2.83891     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     30   2.95576  3.59975  0.11586  3.50566     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     31   3.44674  0.12859  3.49562  2.83891     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     32   2.88818  0.29626  2.95301  1.90684     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     33   2.95576  3.59975  0.11586  3.50566     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     34   0.14034  3.39209  2.80960  3.29488     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     35   0.14034  3.39209  2.80960  3.29488     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     36   3.10057  2.60274  3.14826  0.17676     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     37   3.10057  2.60274  3.14826  0.17676     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     38   3.10057  2.60274  3.14826  0.17676     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     39   0.14034  3.39209  2.80960  3.29488     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     40   0.14034  3.39209  2.80960  3.29488     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     41   2.95576  3.59975  0.11586  3.50566     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     42   3.44674  0.12859  3.49562  2.83891     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     43   0.14034  3.39209  2.80960  3.29488     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     44   3.10057  2.60274  3.14826  0.17676     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     45   0.14034  3.39209  2.80960  3.29488     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01849  4.00001        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhizaria_4_LSU_start_eight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 01:12:25 2012
NSEQ  3
EFFN  3.000000
CKSUM 731854382
STATS LOCAL MSV       -8.0759  0.72023
STATS LOCAL VITERBI   -7.8499  0.72023
STATS LOCAL FORWARD   -3.7973  0.72023
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28009  1.32699  1.44837  1.50615
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.97980  2.52563  3.03204  0.19727      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.86982  3.47591  0.13017  3.36931     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   3.30705  0.14631  3.36166  2.73626     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   0.15719  3.27118  2.73043  3.16274     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   0.15719  3.27118  2.73043  3.16274     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   0.15719  3.27118  2.73043  3.16274     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.86982  3.47591  0.13017  3.36931     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.97980  2.52563  3.03204  0.19727     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.86982  3.47591  0.13017  3.36931     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   0.15719  3.27118  2.73043  3.16274     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.86982  3.47591  0.13017  3.36931     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhizaria_4_LSU_start_eleven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 01:12:42 2012
NSEQ  9
EFFN  3.186035
CKSUM 3916008225
STATS LOCAL MSV       -8.0561  0.71933
STATS LOCAL VITERBI   -7.8429  0.71933
STATS LOCAL FORWARD   -3.9050  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.15899  1.72776  1.18469  1.59616
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  0.00000        *
      1   2.91604  3.54214  0.12228  3.44213      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
      2   0.14795  3.33550  2.77275  3.23296      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
      3   3.04365  2.56650  3.09351  0.18610      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
      4   3.04365  2.56650  3.09351  0.18610      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
      5   2.91604  3.54214  0.12228  3.44213      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
      6   0.14795  3.33550  2.77275  3.23296      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
      7   3.38146  0.13654  3.43308  2.79124      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
      8   3.38146  0.13654  3.43308  2.79124      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
      9   3.04365  2.56650  3.09351  0.18610      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     10   2.91604  3.54214  0.12228  3.44213     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     11   0.14795  3.33550  2.77275  3.23296     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     12   0.14795  3.33550  2.77275  3.23296     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     13   2.91604  3.54214  0.12228  3.44213     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     14   3.04365  2.56650  3.09351  0.18610     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     15   2.91604  3.54214  0.12228  3.44213     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     16   0.14795  3.33550  2.77275  3.23296     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     17   2.91604  3.54214  0.12228  3.44213     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     18   2.91604  3.54214  0.12228  3.44213     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     19   3.04365  2.56650  3.09351  0.18610     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     20   0.14795  3.33550  2.77275  3.23296     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     21   0.14795  3.33550  2.77275  3.23296     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     22   2.91604  3.54214  0.12228  3.44213     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     23   0.14795  3.33550  2.77275  3.23296     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     24   2.91604  3.54214  0.12228  3.44213     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     25   2.91604  3.54214  0.12228  3.44213     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     26   0.14795  3.33550  2.77275  3.23296     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     27   3.38146  0.13654  3.43308  2.79124     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     28   3.38146  0.13654  3.43308  2.79124     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     29   2.91604  3.54214  0.12228  3.44213     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     30   2.91604  3.54214  0.12228  3.44213     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     31   3.38146  0.13654  3.43308  2.79124     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     32   3.38146  0.13654  3.43308  2.79124     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     33   2.91604  3.54214  0.12228  3.44213     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     34   0.14795  3.33550  2.77275  3.23296     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     35   0.14795  3.33550  2.77275  3.23296     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     36   3.04365  2.56650  3.09351  0.18610     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     37   3.04365  2.56650  3.09351  0.18610     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     38   3.04365  2.56650  3.09351  0.18610     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     39   0.14795  3.33550  2.77275  3.23296     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     40   0.14795  3.33550  2.77275  3.23296     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     41   2.91604  3.54214  0.12228  3.44213     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     42   3.38146  0.13654  3.43308  2.79124     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     43   0.14795  3.33550  2.77275  3.23296     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     44   3.04365  2.56650  3.09351  0.18610     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
     45   0.14795  3.33550  2.77275  3.23296     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01910  3.96765        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhizaria_4_LSU_start_fiveb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 01:11:06 2012
NSEQ  8
EFFN  3.277344
CKSUM 3075067396
STATS LOCAL MSV       -8.2566  0.71933
STATS LOCAL VITERBI   -7.5856  0.71933
STATS LOCAL FORWARD   -4.0430  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.05761  1.62227  1.51735  1.44404
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  0.00000        *
      1   3.41625  0.13224  3.46642  2.81671      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
      2   0.14384  3.36564  2.79241  3.26592      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
      3   0.14384  3.36564  2.79241  3.26592      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
      4   0.14384  3.36564  2.79241  3.26592      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
      5   2.93730  3.57289  0.11880  3.47603      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
      6   0.14384  3.36564  2.79241  3.26592      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
      7   3.07387  2.58576  3.12259  0.18107      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
      8   3.41625  0.13224  3.46642  2.81671      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
      9   3.07387  2.58576  3.12259  0.18107      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     10   3.41625  0.13224  3.46642  2.81671     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     11   0.14384  3.36564  2.79241  3.26592     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     12   0.14384  3.36564  2.79241  3.26592     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     13   0.14384  3.36564  2.79241  3.26592     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     14   3.07387  2.58576  3.12259  0.18107     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     15   2.93730  3.57289  0.11880  3.47603     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     16   0.14384  3.36564  2.79241  3.26592     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     17   2.93730  3.57289  0.11880  3.47603     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     18   2.93730  3.57289  0.11880  3.47603     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     19   3.07387  2.58576  3.12259  0.18107     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     20   0.14384  3.36564  2.79241  3.26592     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     21   2.93730  3.57289  0.11880  3.47603     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     22   2.93730  3.57289  0.11880  3.47603     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     23   0.14384  3.36564  2.79241  3.26592     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     24   3.07387  2.58576  3.12259  0.18107     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     25   3.07387  2.58576  3.12259  0.18107     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     26   0.14384  3.36564  2.79241  3.26592     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     27   3.41625  0.13224  3.46642  2.81671     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     28   3.41625  0.13224  3.46642  2.81671     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     29   3.41625  0.13224  3.46642  2.81671     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     30   2.93730  3.57289  0.11880  3.47603     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     31   3.41625  0.13224  3.46642  2.81671     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     32   3.07387  2.58576  3.12259  0.18107     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     33   2.93730  3.57289  0.11880  3.47603     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     34   0.14384  3.36564  2.79241  3.26592     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     35   0.14384  3.36564  2.79241  3.26592     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     36   3.07387  2.58576  3.12259  0.18107     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     37   3.07387  2.58576  3.12259  0.18107     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     38   3.07387  2.58576  3.12259  0.18107     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     39   0.14384  3.36564  2.79241  3.26592     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     40   0.14384  3.36564  2.79241  3.26592     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     41   2.93730  3.57289  0.11880  3.47603     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     42   3.41625  0.13224  3.46642  2.81671     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     43   0.14384  3.36564  2.79241  3.26592     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     44   3.07387  2.58576  3.12259  0.18107     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     45   0.14384  3.36564  2.79241  3.26592     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01877  3.98478        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhizaria_4_LSU_start_seven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 01:12:14 2012
NSEQ  8
EFFN  3.433594
CKSUM 2840026670
STATS LOCAL MSV       -7.5443  0.71933
STATS LOCAL VITERBI   -7.7493  0.71933
STATS LOCAL FORWARD   -3.7240  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.06709  1.60222  1.43710  1.52819
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  0.00000        *
      1   0.13738  3.41512  2.82452  3.32011      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
      2   0.49961  1.66480  2.29793  2.26785      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
      3   0.13738  3.41512  2.82452  3.32011      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
      4   0.13738  3.41512  2.82452  3.32011      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
      5   2.97169  3.62301  0.11337  3.53137      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
      6   3.12394  2.61759  3.17074  0.17309      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
      7   3.47324  0.12552  3.52097  2.85812      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
      8   3.12394  2.61759  3.17074  0.17309      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
      9   3.47324  0.12552  3.52097  2.85812      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     10   0.13738  3.41512  2.82452  3.32011     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     11   0.13738  3.41512  2.82452  3.32011     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     12   2.97169  3.62301  0.11337  3.53137     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     13   3.12394  2.61759  3.17074  0.17309     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     14   2.97169  3.62301  0.11337  3.53137     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     15   0.13738  3.41512  2.82452  3.32011     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     16   0.13738  3.41512  2.82452  3.32011     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     17   2.97169  3.62301  0.11337  3.53137     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     18   2.62679  1.57386  2.69172  0.42666     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     19   0.13738  3.41512  2.82452  3.32011     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     20   0.13738  3.41512  2.82452  3.32011     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     21   2.97169  3.62301  0.11337  3.53137     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     22   2.97169  3.62301  0.11337  3.53137     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     23   3.47324  0.12552  3.52097  2.85812     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     24   2.97169  3.62301  0.11337  3.53137     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     25   0.13738  3.41512  2.82452  3.32011     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     26   3.47324  0.12552  3.52097  2.85812     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     27   3.47324  0.12552  3.52097  2.85812     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     28   3.47324  0.12552  3.52097  2.85812     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     29   2.97169  3.62301  0.11337  3.53137     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     30   3.47324  0.12552  3.52097  2.85812     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     31   3.12394  2.61759  3.17074  0.17309     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     32   2.97169  3.62301  0.11337  3.53137     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     33   0.13738  3.41512  2.82452  3.32011     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     34   0.13738  3.41512  2.82452  3.32011     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     35   3.12394  2.61759  3.17074  0.17309     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     36   3.12394  2.61759  3.17074  0.17309     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     37   3.12394  2.61759  3.17074  0.17309     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     38   0.13738  3.41512  2.82452  3.32011     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     39   0.13738  3.41512  2.82452  3.32011     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     40   2.97169  3.62301  0.11337  3.53137     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     41   3.47324  0.12552  3.52097  2.85812     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     42   0.13738  3.41512  2.82452  3.32011     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     43   3.12394  2.61759  3.17074  0.17309     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     44   0.13738  3.41512  2.82452  3.32011     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
     45   3.12394  2.61759  3.17074  0.17309     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01824  4.01342        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhizaria_4_LSU_start_sixb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 01:11:19 2012
NSEQ  2
EFFN  2.000000
CKSUM 2457692988
STATS LOCAL MSV       -7.5215  0.72807
STATS LOCAL VITERBI   -8.1900  0.72807
STATS LOCAL FORWARD   -3.3812  0.72807
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   0.97738  1.41032  1.70842  1.61703
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   0.23862  2.84929  2.43386  2.70756      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.81865  0.23582  2.88868  2.35662     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhizaria_4_LSU_start_ten_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 15:56:55 2012
NSEQ  23
EFFN  3.220337
CKSUM 656820074
STATS LOCAL MSV       -8.1133  0.71932
STATS LOCAL VITERBI   -7.8470  0.71932
STATS LOCAL FORWARD   -4.0798  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.10983  1.47054  1.44208  1.58890
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  0.00000        *
      1   0.14638  3.34693  2.78022  3.24546      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
      2   2.92413  3.55382  0.12094  3.45500      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
      3   2.92413  3.55382  0.12094  3.45500      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
      4   3.39466  0.13489  3.44573  2.80092      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
      5   0.14638  3.34693  2.78022  3.24546      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
      6   3.39466  0.13489  3.44573  2.80092      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
      7   0.14638  3.34693  2.78022  3.24546      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
      8   3.05509  2.57380  3.10452  0.18418      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
      9   3.39466  0.13489  3.44573  2.80092      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     10   0.14638  3.34693  2.78022  3.24546     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     11   2.92413  3.55382  0.12094  3.45500     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     12   3.39466  0.13489  3.44573  2.80092     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     13   3.05509  2.57380  3.10452  0.18418     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     14   3.39466  0.13489  3.44573  2.80092     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     15   2.92413  3.55382  0.12094  3.45500     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     16   0.14638  3.34693  2.78022  3.24546     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     17   2.92413  3.55382  0.12094  3.45500     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     18   3.05509  2.57380  3.10452  0.18418     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     19   2.92413  3.55382  0.12094  3.45500     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     20   0.14638  3.34693  2.78022  3.24546     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     21   2.92413  3.55382  0.12094  3.45500     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     22   2.92413  3.55382  0.12094  3.45500     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     23   0.14638  3.34693  2.78022  3.24546     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     24   3.05509  2.57380  3.10452  0.18418     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     25   0.14638  3.34693  2.78022  3.24546     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     26   3.39466  0.13489  3.44573  2.80092     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     27   2.92413  3.55382  0.12094  3.45500     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     28   3.39466  0.13489  3.44573  2.80092     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     29   2.92413  3.55382  0.12094  3.45500     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     30   3.39466  0.13489  3.44573  2.80092     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     31   3.05509  2.57380  3.10452  0.18418     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     32   0.14638  3.34693  2.78022  3.24546     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     33   0.14638  3.34693  2.78022  3.24546     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     34   0.14638  3.34693  2.78022  3.24546     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     35   3.39466  0.13489  3.44573  2.80092     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     36   3.05509  2.57380  3.10452  0.18418     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     37   3.05509  2.57380  3.10452  0.18418     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     38   0.14638  3.34693  2.78022  3.24546     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     39   0.14638  3.34693  2.78022  3.24546     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     40   0.14638  3.34693  2.78022  3.24546     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     41   3.39466  0.13489  3.44573  2.80092     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     42   0.14638  3.34693  2.78022  3.24546     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     43   3.05509  2.57380  3.10452  0.18418     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     44   0.14638  3.34693  2.78022  3.24546     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     45   3.05509  2.57380  3.10452  0.18418     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01897  3.97412        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Rhizaria_4_LSU_start_threeb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 01:10:48 2012
NSEQ  2
EFFN  2.000000
CKSUM 599151012
STATS LOCAL MSV       -7.4804  0.72817
STATS LOCAL VITERBI   -8.1165  0.72817
STATS LOCAL FORWARD   -3.4979  0.72817
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.09588  1.59613  1.48788  1.43875
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   0.23862  2.84929  2.43386  2.70756      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Rhizaria_1_SSU_end_eight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 02:47:07 2012
NSEQ  9
EFFN  3.344238
CKSUM 2541343808
STATS LOCAL MSV       -8.0722  0.71932
STATS LOCAL VITERBI   -7.8311  0.71932
STATS LOCAL FORWARD   -4.0456  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.09860  1.66560  1.29697  1.58852
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  0.00000        *
      1   0.14099  3.38714  2.80639  3.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
      2   2.95232  3.59473  0.11640  3.50012      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
      3   3.09556  2.59956  3.14345  0.17756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
      4   3.44103  0.12927  3.49015  2.83476      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
      5   2.95232  3.59473  0.11640  3.50012      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
      6   3.09556  2.59956  3.14345  0.17756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
      7   0.14099  3.38714  2.80639  3.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
      8   0.14099  3.38714  2.80639  3.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
      9   3.44103  0.12927  3.49015  2.83476      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     10   0.14099  3.38714  2.80639  3.28946     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     11   0.14099  3.38714  2.80639  3.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     12   2.95232  3.59473  0.11640  3.50012     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     13   2.95232  3.59473  0.11640  3.50012     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     14   3.44103  0.12927  3.49015  2.83476     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     15   0.14099  3.38714  2.80639  3.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     16   3.09556  2.59956  3.14345  0.17756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     17   3.44103  0.12927  3.49015  2.83476     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     18   0.14099  3.38714  2.80639  3.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     19   2.95232  3.59473  0.11640  3.50012     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     20   3.09556  2.59956  3.14345  0.17756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     21   0.14099  3.38714  2.80639  3.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     22   2.95232  3.59473  0.11640  3.50012     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     23   2.95232  3.59473  0.11640  3.50012     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     24   3.09556  2.59956  3.14345  0.17756     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     25   2.95232  3.59473  0.11640  3.50012     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     26   0.14099  3.38714  2.80639  3.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     27   0.14099  3.38714  2.80639  3.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     28   2.71758  0.29638  2.29202  2.41461     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     29   3.44103  0.12927  3.49015  2.83476     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     30   3.09556  2.59956  3.14345  0.17756     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     31   2.95232  3.59473  0.11640  3.50012     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     32   3.44103  0.12927  3.49015  2.83476     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     33   0.14099  3.38714  2.80639  3.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     34   2.95232  3.59473  0.11640  3.50012     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     35   0.14099  3.38714  2.80639  3.28946     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     36   0.14099  3.38714  2.80639  3.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     37   2.95232  3.59473  0.11640  3.50012     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     38   2.95232  3.59473  0.11640  3.50012     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     39   0.14099  3.38714  2.80639  3.28946     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     40   3.09556  2.59956  3.14345  0.17756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     41   2.22549  0.30216  2.77330  2.40447     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     42   0.14099  3.38714  2.80639  3.28946     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     43   3.09556  2.59956  3.14345  0.17756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     44   3.09556  2.59956  3.14345  0.17756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
     45   0.14099  3.38714  2.80639  3.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01854  3.99714        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Rhizaria_1_SSU_end_five_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 02:46:45 2012
NSEQ  28
EFFN  3.202637
CKSUM 173814394
STATS LOCAL MSV       -7.9514  0.71931
STATS LOCAL VITERBI   -7.8681  0.71931
STATS LOCAL FORWARD   -3.8589  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.15846  1.63373  1.24319  1.59767
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  0.00000        *
      1   0.14718  3.34105  2.77638  3.23903      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
      2   2.91997  3.54781  0.12163  3.44838      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
      3   3.04920  2.57004  3.09885  0.18516      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
      4   3.38787  0.13574  3.43922  2.79594      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
      5   2.91997  3.54781  0.12163  3.44838      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.08261  3.98947  2.80042  1.46634  0.26236  1.09861  0.40547
      6   2.97071  2.51979  3.02329  0.19892      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03942  3.94628  3.94628  1.46634  0.26236  0.47562  0.97153
      7   0.14718  3.34105  2.77638  3.23903      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
      8   0.14718  3.34105  2.77638  3.23903      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
      9   3.38787  0.13574  3.43922  2.79594      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     10   0.14718  3.34105  2.77638  3.23903     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     11   0.14718  3.34105  2.77638  3.23903     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     12   2.91997  3.54781  0.12163  3.44838     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     13   2.91997  3.54781  0.12163  3.44838     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     14   3.38787  0.13574  3.43922  2.79594     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     15   0.14718  3.34105  2.77638  3.23903     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     16   3.04920  2.57004  3.09885  0.18516     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     17   3.38787  0.13574  3.43922  2.79594     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     18   2.91997  3.54781  0.12163  3.44838     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     19   2.91997  3.54781  0.12163  3.44838     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     20   3.04920  2.57004  3.09885  0.18516     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     21   0.14718  3.34105  2.77638  3.23903     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     22   2.91997  3.54781  0.12163  3.44838     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     23   2.91997  3.54781  0.12163  3.44838     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     24   3.04920  2.57004  3.09885  0.18516     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     25   2.91997  3.54781  0.12163  3.44838     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     26   0.14718  3.34105  2.77638  3.23903     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     27   0.14718  3.34105  2.77638  3.23903     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     28   3.38787  0.13574  3.43922  2.79594     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     29   3.38787  0.13574  3.43922  2.79594     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     30   3.04920  2.57004  3.09885  0.18516     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     31   2.91997  3.54781  0.12163  3.44838     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     32   3.38787  0.13574  3.43922  2.79594     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     33   0.14718  3.34105  2.77638  3.23903     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     34   2.91997  3.54781  0.12163  3.44838     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     35   0.14718  3.34105  2.77638  3.23903     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     36   0.14718  3.34105  2.77638  3.23903     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     37   2.91997  3.54781  0.12163  3.44838     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     38   2.91997  3.54781  0.12163  3.44838     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     39   0.14718  3.34105  2.77638  3.23903     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     40   3.04920  2.57004  3.09885  0.18516     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     41   3.38787  0.13574  3.43922  2.79594     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     42   0.14718  3.34105  2.77638  3.23903     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     43   3.04920  2.57004  3.09885  0.18516     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     44   3.04920  2.57004  3.09885  0.18516     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
     45   0.14718  3.34105  2.77638  3.23903     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01904  3.97079        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Rhizaria_1_SSU_end_four_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 02:46:30 2012
NSEQ  6
EFFN  3.325195
CKSUM 4117779485
STATS LOCAL MSV       -8.0198  0.71933
STATS LOCAL VITERBI   -7.7895  0.71933
STATS LOCAL FORWARD   -3.9838  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.13372  1.63099  1.27909  1.58896
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  0.00000        *
      1   0.14179  3.38107  2.80245  3.28281      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      2   2.94809  3.58857  0.11707  3.49333      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      3   3.08942  2.59566  3.13755  0.17855      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      4   3.43404  0.13010  3.48346  2.82967      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      5   2.94809  3.58857  0.11707  3.49333      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      6   3.08942  2.59566  3.13755  0.17855      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      7   0.14179  3.38107  2.80245  3.28281      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      8   0.14179  3.38107  2.80245  3.28281      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
      9   3.43404  0.13010  3.48346  2.82967      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     10   0.14179  3.38107  2.80245  3.28281     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     11   0.14179  3.38107  2.80245  3.28281     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     12   2.94809  3.58857  0.11707  3.49333     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     13   2.94809  3.58857  0.11707  3.49333     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     14   3.43404  0.13010  3.48346  2.82967     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     15   0.14179  3.38107  2.80245  3.28281     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     16   3.08942  2.59566  3.13755  0.17855     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     17   3.43404  0.13010  3.48346  2.82967     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     18   0.86143  2.51567  0.90836  2.37033     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     19   2.94809  3.58857  0.11707  3.49333     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     20   3.08942  2.59566  3.13755  0.17855     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     21   0.14179  3.38107  2.80245  3.28281     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     22   2.94809  3.58857  0.11707  3.49333     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     23   2.94809  3.58857  0.11707  3.49333     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     24   3.08942  2.59566  3.13755  0.17855     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     25   2.94809  3.58857  0.11707  3.49333     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     26   0.14179  3.38107  2.80245  3.28281     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     27   0.14179  3.38107  2.80245  3.28281     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     28   3.43404  0.13010  3.48346  2.82967     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     29   3.43404  0.13010  3.48346  2.82967     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     30   3.08942  2.59566  3.13755  0.17855     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     31   2.94809  3.58857  0.11707  3.49333     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     32   3.43404  0.13010  3.48346  2.82967     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     33   0.14179  3.38107  2.80245  3.28281     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     34   2.94809  3.58857  0.11707  3.49333     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     35   0.14179  3.38107  2.80245  3.28281     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     36   0.14179  3.38107  2.80245  3.28281     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     37   2.94809  3.58857  0.11707  3.49333     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     38   2.94809  3.58857  0.11707  3.49333     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     39   0.14179  3.38107  2.80245  3.28281     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     40   3.08942  2.59566  3.13755  0.17855     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     41   3.43404  0.13010  3.48346  2.82967     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     42   0.14179  3.38107  2.80245  3.28281     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     43   3.08942  2.59566  3.13755  0.17855     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     44   3.08942  2.59566  3.13755  0.17855     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
     45   0.14179  3.38107  2.80245  3.28281     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01860  3.99364        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Rhizaria_1_SSU_end_nine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 02:47:20 2012
NSEQ  16
EFFN  3.269531
CKSUM 4070040162
STATS LOCAL MSV       -8.0187  0.71931
STATS LOCAL VITERBI   -7.6599  0.71931
STATS LOCAL FORWARD   -4.0885  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26783  1.62578  1.24505  1.45297
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  0.00000        *
      1   0.14418  3.36310  2.79076  3.26314      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      2   2.93551  3.57031  0.11909  3.47317      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      3   3.07131  2.58413  3.12013  0.18149      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      4   3.41331  0.13259  3.46361  2.81457      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      5   2.93551  3.57031  0.11909  3.47317      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      6   3.07131  2.58413  3.12013  0.18149      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      7   0.14418  3.36310  2.79076  3.26314      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      8   0.14418  3.36310  2.79076  3.26314      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      9   3.41331  0.13259  3.46361  2.81457      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     10   0.14418  3.36310  2.79076  3.26314     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     11   0.14418  3.36310  2.79076  3.26314     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     12   2.93551  3.57031  0.11909  3.47317     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     13   2.93551  3.57031  0.11909  3.47317     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     14   3.07131  2.58413  3.12013  0.18149     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     15   3.07131  2.58413  3.12013  0.18149     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     16   3.07131  2.58413  3.12013  0.18149     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     17   3.41331  0.13259  3.46361  2.81457     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     18   3.41331  0.13259  3.46361  2.81457     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     19   2.93551  3.57031  0.11909  3.47317     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     20   3.07131  2.58413  3.12013  0.18149     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     21   0.14418  3.36310  2.79076  3.26314     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     22   2.93551  3.57031  0.11909  3.47317     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     23   2.93551  3.57031  0.11909  3.47317     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     24   3.07131  2.58413  3.12013  0.18149     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     25   2.93551  3.57031  0.11909  3.47317     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     26   0.14418  3.36310  2.79076  3.26314     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     27   0.14418  3.36310  2.79076  3.26314     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     28   3.41331  0.13259  3.46361  2.81457     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     29   3.41331  0.13259  3.46361  2.81457     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     30   2.32277  2.42204  2.75037  0.28854     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     31   2.93551  3.57031  0.11909  3.47317     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     32   3.41331  0.13259  3.46361  2.81457     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     33   2.93551  3.57031  0.11909  3.47317     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     34   2.93551  3.57031  0.11909  3.47317     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     35   0.14418  3.36310  2.79076  3.26314     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     36   0.14418  3.36310  2.79076  3.26314     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     37   2.93551  3.57031  0.11909  3.47317     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     38   2.93551  3.57031  0.11909  3.47317     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     39   0.14418  3.36310  2.79076  3.26314     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     40   3.07131  2.58413  3.12013  0.18149     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     41   3.41331  0.13259  3.46361  2.81457     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     42   0.14418  3.36310  2.79076  3.26314     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     43   3.07131  2.58413  3.12013  0.18149     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     44   3.07131  2.58413  3.12013  0.18149     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     45   0.14418  3.36310  2.79076  3.26314     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01880  3.98333        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Rhizaria_1_SSU_end_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 02:45:40 2012
NSEQ  29
EFFN  3.366577
CKSUM 2032687351
STATS LOCAL MSV       -8.0108  0.71931
STATS LOCAL VITERBI   -7.6631  0.71931
STATS LOCAL FORWARD   -4.1093  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27825  1.61970  1.24244  1.44886
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  0.00000        *
      1   0.14007  3.39421  2.81098  3.29720      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
      2   2.95723  3.60189  0.11562  3.50803      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
      3   3.10271  2.60411  3.15033  0.17642      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
      4   3.44918  0.12831  3.49795  2.84068      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
      5   2.95723  3.60189  0.11562  3.50803      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
      6   3.10271  2.60411  3.15033  0.17642      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
      7   0.14007  3.39421  2.81098  3.29720      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
      8   0.19533  2.82319  2.68717  2.99676      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
      9   3.44918  0.12831  3.49795  2.84068      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     10   0.14007  3.39421  2.81098  3.29720     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     11   0.14007  3.39421  2.81098  3.29720     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     12   2.95723  3.60189  0.11562  3.50803     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     13   2.95723  3.60189  0.11562  3.50803     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     14   3.10271  2.60411  3.15033  0.17642     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     15   3.10271  2.60411  3.15033  0.17642     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     16   3.10271  2.60411  3.15033  0.17642     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     17   3.44918  0.12831  3.49795  2.84068     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     18   3.44918  0.12831  3.49795  2.84068     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     19   2.95723  3.60189  0.11562  3.50803     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     20   3.10271  2.60411  3.15033  0.17642     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     21   0.28448  2.54998  2.51260  2.42523     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     22   2.95723  3.60189  0.11562  3.50803     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     23   2.95723  3.60189  0.11562  3.50803     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     24   3.10271  2.60411  3.15033  0.17642     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     25   2.95723  3.60189  0.11562  3.50803     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     26   0.14007  3.39421  2.81098  3.29720     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     27   0.14007  3.39421  2.81098  3.29720     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     28   3.44918  0.12831  3.49795  2.84068     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     29   3.44918  0.12831  3.49795  2.84068     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     30   2.20930  2.40656  2.70539  0.31026     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     31   2.95723  3.60189  0.11562  3.50803     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     32   3.44918  0.12831  3.49795  2.84068     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     33   2.95723  3.60189  0.11562  3.50803     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     34   2.95723  3.60189  0.11562  3.50803     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     35   0.14007  3.39421  2.81098  3.29720     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     36   0.14007  3.39421  2.81098  3.29720     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     37   2.95723  3.60189  0.11562  3.50803     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     38   2.95723  3.60189  0.11562  3.50803     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     39   0.14007  3.39421  2.81098  3.29720     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     40   3.10271  2.60411  3.15033  0.17642     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     41   3.44918  0.12831  3.49795  2.84068     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     42   0.14007  3.39421  2.81098  3.29720     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     43   3.10271  2.60411  3.15033  0.17642     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     44   3.10271  2.60411  3.15033  0.17642     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
     45   0.14007  3.39421  2.81098  3.29720     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01846  4.00124        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Rhizaria_1_SSU_end_seven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 02:46:56 2012
NSEQ  79
EFFN  3.273987
CKSUM 3260105086
STATS LOCAL MSV       -7.8870  0.71932
STATS LOCAL VITERBI   -7.7661  0.71932
STATS LOCAL FORWARD   -3.9848  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27113  1.54768  1.24856  1.51492
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  0.00000        *
      1   0.14399  3.36455  2.79170  3.26473      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
      2   2.93653  3.57178  0.11892  3.47480      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
      3   3.07277  2.58506  3.12153  0.18125      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
      4   3.41499  0.13239  3.46521  2.81579      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
      5   2.70587  3.46056  0.14274  3.35827      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
      6   3.07277  2.58506  3.12153  0.18125      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
      7   0.14399  3.36455  2.79170  3.26473      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
      8   0.14399  3.36455  2.79170  3.26473      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
      9   3.41499  0.13239  3.46521  2.81579      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     10   0.14399  3.36455  2.79170  3.26473     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     11   0.14399  3.36455  2.79170  3.26473     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     12   2.81580  3.33051  0.15813  2.98316     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     13   2.93653  3.57178  0.11892  3.47480     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     14   3.41499  0.13239  3.46521  2.81579     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     15   0.14399  3.36455  2.79170  3.26473     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     16   3.07277  2.58506  3.12153  0.18125     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     17   3.41499  0.13239  3.46521  2.81579     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     18   2.93653  3.57178  0.11892  3.47480     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     19   2.93653  3.57178  0.11892  3.47480     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     20   3.07277  2.58506  3.12153  0.18125     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     21   0.14399  3.36455  2.79170  3.26473     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     22   2.93653  3.57178  0.11892  3.47480     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     23   2.93653  3.57178  0.11892  3.47480     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     24   3.07277  2.58506  3.12153  0.18125     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     25   2.93653  3.57178  0.11892  3.47480     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     26   0.14399  3.36455  2.79170  3.26473     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     27   0.14399  3.36455  2.79170  3.26473     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     28   3.41499  0.13239  3.46521  2.81579     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     29   3.41499  0.13239  3.46521  2.81579     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     30   3.07277  2.58506  3.12153  0.18125     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     31   2.93653  3.57178  0.11892  3.47480     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     32   3.23383  0.16151  3.12410  2.72178     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     33   3.41499  0.13239  3.46521  2.81579     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     34   2.93653  3.57178  0.11892  3.47480     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     35   0.14399  3.36455  2.79170  3.26473     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     36   3.07277  2.58506  3.12153  0.18125     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     37   2.93653  3.57178  0.11892  3.47480     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     38   2.93653  3.57178  0.11892  3.47480     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     39   0.16135  3.29923  2.64224  3.19680     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     40   3.07277  2.58506  3.12153  0.18125     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     41   3.41499  0.13239  3.46521  2.81579     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     42   0.14399  3.36455  2.79170  3.26473     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     43   3.07277  2.58506  3.12153  0.18125     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     44   2.92813  2.52850  2.81557  0.21461     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
     45   0.14399  3.36455  2.79170  3.26473     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01878  3.98416        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Rhizaria_1_SSU_end_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 02:46:01 2012
NSEQ  9
EFFN  3.256348
CKSUM 428889299
STATS LOCAL MSV       -8.0515  0.71931
STATS LOCAL VITERBI   -7.6933  0.71931
STATS LOCAL FORWARD   -4.1243  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33223  1.49217  1.18880  1.57678
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  0.00000        *
      1   0.14476  3.35879  2.78795  3.25843      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
      2   2.93249  3.56592  0.11958  3.46834      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
      3   3.06699  2.58138  3.11596  0.18220      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
      4   3.40835  0.13320  3.45885  2.81094      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
      5   2.93249  3.56592  0.11958  3.46834      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
      6   3.06699  2.58138  3.11596  0.18220      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
      7   0.14476  3.35879  2.78795  3.25843      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
      8   0.14476  3.35879  2.78795  3.25843      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
      9   3.40835  0.13320  3.45885  2.81094      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     10   0.14476  3.35879  2.78795  3.25843     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     11   0.14476  3.35879  2.78795  3.25843     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     12   2.93249  3.56592  0.11958  3.46834     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     13   2.93249  3.56592  0.11958  3.46834     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     14   3.06699  2.58138  3.11596  0.18220     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     15   3.06699  2.58138  3.11596  0.18220     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     16   3.06699  2.58138  3.11596  0.18220     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     17   3.40835  0.13320  3.45885  2.81094     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     18   3.40835  0.13320  3.45885  2.81094     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     19   2.93249  3.56592  0.11958  3.46834     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     20   3.06699  2.58138  3.11596  0.18220     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     21   0.14476  3.35879  2.78795  3.25843     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     22   2.93249  3.56592  0.11958  3.46834     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     23   2.93249  3.56592  0.11958  3.46834     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     24   3.06699  2.58138  3.11596  0.18220     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     25   2.93249  3.56592  0.11958  3.46834     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     26   0.14476  3.35879  2.78795  3.25843     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     27   0.14476  3.35879  2.78795  3.25843     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     28   3.40835  0.13320  3.45885  2.81094     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     29   3.40835  0.13320  3.45885  2.81094     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     30   3.06699  2.58138  3.11596  0.18220     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     31   2.93249  3.56592  0.11958  3.46834     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     32   3.40835  0.13320  3.45885  2.81094     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     33   2.93249  3.56592  0.11958  3.46834     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     34   2.93249  3.56592  0.11958  3.46834     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     35   0.14476  3.35879  2.78795  3.25843     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     36   0.14476  3.35879  2.78795  3.25843     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     37   2.93249  3.56592  0.11958  3.46834     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     38   2.93249  3.56592  0.11958  3.46834     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     39   0.14476  3.35879  2.78795  3.25843     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     40   3.06699  2.58138  3.11596  0.18220     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     41   3.40835  0.13320  3.45885  2.81094     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     42   0.14476  3.35879  2.78795  3.25843     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     43   3.40835  0.13320  3.45885  2.81094     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     44   2.67630  0.40722  2.74549  1.60214     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
     45   2.93249  3.56592  0.11958  3.46834     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01885  3.98087        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Rhizaria_1_SSU_end_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Jan  7 02:45:51 2012
NSEQ  7
EFFN  3.250488
CKSUM 1479234683
STATS LOCAL MSV       -7.8550  0.71933
STATS LOCAL VITERBI   -7.6574  0.71933
STATS LOCAL FORWARD   -3.9885  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27354  1.45969  1.38387  1.43866
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  0.00000        *
      1   3.40613  0.13347  3.45673  2.80932      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      2   0.14502  3.35687  2.78670  3.25633      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      3   3.06506  2.58015  3.11411  0.18252      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      4   2.93114  3.56396  0.11980  3.46618      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      5   3.40613  0.13347  3.45673  2.80932      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      6   0.14502  3.35687  2.78670  3.25633      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      7   3.40613  0.13347  3.45673  2.80932      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      8   0.14502  3.35687  2.78670  3.25633      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
      9   3.06506  2.58015  3.11411  0.18252      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     10   0.14502  3.35687  2.78670  3.25633     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     11   3.06506  2.58015  3.11411  0.18252     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     12   0.14502  3.35687  2.78670  3.25633     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     13   3.40613  0.13347  3.45673  2.80932     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     14   2.93114  3.56396  0.11980  3.46618     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     15   3.06506  2.58015  3.11411  0.18252     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     16   3.06506  2.58015  3.11411  0.18252     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     17   3.40613  0.13347  3.45673  2.80932     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     18   3.40613  0.13347  3.45673  2.80932     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     19   2.93114  3.56396  0.11980  3.46618     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     20   3.06506  2.58015  3.11411  0.18252     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     21   0.14502  3.35687  2.78670  3.25633     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.12968  3.99829  2.27038  1.46634  0.26236  1.09861  0.40547
     22   2.81175  3.39405  0.14077  3.27968     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04093  3.90954  3.90954  1.46634  0.26236  0.30403  1.33879
     23   2.93114  3.56396  0.11980  3.46618     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     24   3.06506  2.58015  3.11411  0.18252     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     25   2.93114  3.56396  0.11980  3.46618     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     26   0.14502  3.35687  2.78670  3.25633     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     27   0.14502  3.35687  2.78670  3.25633     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     28   3.40613  0.13347  3.45673  2.80932     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     29   3.40613  0.13347  3.45673  2.80932     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     30   3.06506  2.58015  3.11411  0.18252     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     31   2.93114  3.56396  0.11980  3.46618     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     32   3.40613  0.13347  3.45673  2.80932     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     33   2.93114  3.56396  0.11980  3.46618     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     34   2.93114  3.56396  0.11980  3.46618     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     35   0.14502  3.35687  2.78670  3.25633     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     36   0.14502  3.35687  2.78670  3.25633     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     37   2.93114  3.56396  0.11980  3.46618     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     38   2.93114  3.56396  0.11980  3.46618     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     39   0.14502  3.35687  2.78670  3.25633     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     40   3.06506  2.58015  3.11411  0.18252     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     41   3.40613  0.13347  3.45673  2.80932     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     42   0.14502  3.35687  2.78670  3.25633     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     43   3.06506  2.58015  3.11411  0.18252     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     44   3.06506  2.58015  3.11411  0.18252     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
     45   0.14502  3.35687  2.78670  3.25633     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01887  3.97977        *  1.46634  0.26236  0.00000        *
//