Mercurial > repos > okorol > itsx
view ITSx_db/HMMs/A.hmm @ 9:3610c6312b85 draft default tip
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| author | okorol |
|---|---|
| date | Fri, 05 Jun 2015 12:05:37 -0400 |
| parents | f82c70f54bd7 |
| children |
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HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_eighta_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:48:49 2012 NSEQ 2 EFFN 2.000000 CKSUM 875354829 STATS LOCAL MSV -7.4772 0.72750 STATS LOCAL VITERBI -8.4131 0.72750 STATS LOCAL FORWARD -3.2493 0.72750 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.02810 1.19053 1.12475 1.42869 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.53331 3.02441 0.20344 2.88069 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.57915 2.25909 2.64442 0.28946 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23862 2.84929 2.43386 2.70756 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.53331 3.02441 0.20344 2.88069 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.81865 0.23582 2.88868 2.35662 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.57915 2.25909 2.64442 0.28946 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_eightb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:48:56 2012 NSEQ 5 EFFN 3.334961 CKSUM 2194532692 STATS LOCAL MSV -8.0757 0.71931 STATS LOCAL VITERBI -7.9285 0.71931 STATS LOCAL FORWARD -3.6374 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.20861 1.12285 1.26075 1.26814 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 0.00000 * 1 2.95026 3.59174 0.11672 3.49682 1 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 2 3.43763 0.12967 3.48690 2.83229 2 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 3 2.95026 3.59174 0.11672 3.49682 3 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 4 3.43763 0.12967 3.48690 2.83229 4 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 5 3.43763 0.12967 3.48690 2.83229 5 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 6 2.95026 3.59174 0.11672 3.49682 6 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 7 2.95026 3.59174 0.11672 3.49682 7 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 8 3.43763 0.12967 3.48690 2.83229 8 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 9 3.09257 2.59766 3.14057 0.17804 9 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 10 2.95026 3.59174 0.11672 3.49682 10 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 11 2.95026 3.59174 0.11672 3.49682 11 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 12 3.43763 0.12967 3.48690 2.83229 12 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 13 2.44734 1.18879 2.51771 0.63820 13 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 14 3.43763 0.12967 3.48690 2.83229 14 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 15 3.09257 2.59766 3.14057 0.17804 15 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 16 3.43763 0.12967 3.48690 2.83229 16 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 17 3.43763 0.12967 3.48690 2.83229 17 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 18 0.14138 3.38419 2.80447 3.28622 18 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 19 2.95026 3.59174 0.11672 3.49682 19 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 20 3.43763 0.12967 3.48690 2.83229 20 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 21 3.43763 0.12967 3.48690 2.83229 21 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 22 2.95026 3.59174 0.11672 3.49682 22 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 23 2.95026 3.59174 0.11672 3.49682 23 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 24 3.43763 0.12967 3.48690 2.83229 24 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 25 0.14138 3.38419 2.80447 3.28622 25 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 26 3.09257 2.59766 3.14057 0.17804 26 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 27 2.95026 3.59174 0.11672 3.49682 27 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 28 3.43763 0.12967 3.48690 2.83229 28 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 29 3.09257 2.59766 3.14057 0.17804 29 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 30 3.09257 2.59766 3.14057 0.17804 30 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 31 2.95026 3.59174 0.11672 3.49682 31 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 32 3.09257 2.59766 3.14057 0.17804 32 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 33 3.09257 2.59766 3.14057 0.17804 33 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 34 3.09257 2.59766 3.14057 0.17804 34 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 35 3.43763 0.12967 3.48690 2.83229 35 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 36 0.14138 3.38419 2.80447 3.28622 36 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 37 2.95026 3.59174 0.11672 3.49682 37 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 38 3.09257 2.59766 3.14057 0.17804 38 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 39 2.95026 3.59174 0.11672 3.49682 39 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 40 3.09257 2.59766 3.14057 0.17804 40 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 41 3.43763 0.12967 3.48690 2.83229 41 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 42 3.09257 2.59766 3.14057 0.17804 42 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 43 3.43763 0.12967 3.48690 2.83229 43 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 44 3.09257 2.59766 3.14057 0.17804 44 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01367 4.01367 1.46634 0.26236 1.09861 0.40547 45 3.09257 2.59766 3.14057 0.17804 45 - - 1.38629 1.38629 1.38629 1.38629 0.01857 3.99544 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_eightc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:49:01 2012 NSEQ 5 EFFN 3.686523 CKSUM 4049282212 STATS LOCAL MSV -7.6145 0.71933 STATS LOCAL VITERBI -7.6391 0.71933 STATS LOCAL FORWARD -3.8726 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.75248 1.41803 1.36097 1.11458 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 0.00000 * 1 0.12822 3.48998 2.87277 3.40223 1 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 2 3.55903 0.11614 3.60298 2.91981 2 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 3 0.12822 3.48998 2.87277 3.40223 3 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 4 3.55903 0.11614 3.60298 2.91981 4 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 5 3.55903 0.11614 3.60298 2.91981 5 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 6 3.02261 3.69787 0.10579 3.61425 6 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 7 3.02261 3.69787 0.10579 3.61425 7 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 8 0.12822 3.48998 2.87277 3.40223 8 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 9 3.02261 3.69787 0.10579 3.61425 9 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 10 0.63103 2.61772 1.16807 2.47669 10 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 11 3.02261 3.69787 0.10579 3.61425 11 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 12 3.20077 2.66632 3.24458 0.16161 12 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 13 1.57289 1.57364 2.19918 0.74577 13 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 14 3.55903 0.11614 3.60298 2.91981 14 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 15 3.20077 2.66632 3.24458 0.16161 15 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 16 3.55903 0.11614 3.60298 2.91981 16 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 17 2.76133 1.72287 2.82248 0.35842 17 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 18 3.55903 0.11614 3.60298 2.91981 18 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 19 3.20077 2.66632 3.24458 0.16161 19 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 20 3.20077 2.66632 3.24458 0.16161 20 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 21 3.55903 0.11614 3.60298 2.91981 21 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 22 3.02261 3.69787 0.10579 3.61425 22 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 23 3.02261 3.69787 0.10579 3.61425 23 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 24 3.20077 2.66632 3.24458 0.16161 24 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 25 0.12822 3.48998 2.87277 3.40223 25 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 26 3.20077 2.66632 3.24458 0.16161 26 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 27 3.02261 3.69787 0.10579 3.61425 27 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 28 3.55903 0.11614 3.60298 2.91981 28 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 29 3.20077 2.66632 3.24458 0.16161 29 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 30 3.20077 2.66632 3.24458 0.16161 30 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 31 3.55903 0.11614 3.60298 2.91981 31 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 32 3.20077 2.66632 3.24458 0.16161 32 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 33 3.20077 2.66632 3.24458 0.16161 33 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 34 3.20077 2.66632 3.24458 0.16161 34 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 35 3.55903 0.11614 3.60298 2.91981 35 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 36 0.12822 3.48998 2.87277 3.40223 36 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 37 3.02261 3.69787 0.10579 3.61425 37 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 38 3.20077 2.66632 3.24458 0.16161 38 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 39 3.02261 3.69787 0.10579 3.61425 39 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 40 3.20077 2.66632 3.24458 0.16161 40 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 41 3.02261 3.69787 0.10579 3.61425 41 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 42 3.20077 2.66632 3.24458 0.16161 42 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 43 3.02261 3.69787 0.10579 3.61425 43 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 44 0.12822 3.48998 2.87277 3.40223 44 - - 1.38629 1.38629 1.38629 1.38629 0.03457 4.07525 4.07525 1.46634 0.26236 1.09861 0.40547 45 3.20077 2.66632 3.24458 0.16161 45 - - 1.38629 1.38629 1.38629 1.38629 0.01743 4.05812 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_eightd_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:49:07 2012 NSEQ 2 EFFN 2.000000 CKSUM 1872219876 STATS LOCAL MSV -7.3853 0.72989 STATS LOCAL VITERBI -8.4090 0.72989 STATS LOCAL FORWARD -3.4944 0.72989 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.71692 1.44276 1.18984 1.27355 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.53331 3.02441 0.20344 2.88069 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.23862 2.84929 2.43386 2.70756 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 1.88179 1.10717 1.04597 1.79675 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.15554 1.00938 2.23102 0.88601 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.15554 1.00938 2.23102 0.88601 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.57915 2.25909 2.64442 0.28946 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_elevena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:49:27 2012 NSEQ 5 EFFN 3.393555 CKSUM 1575714051 STATS LOCAL MSV -7.4839 0.71934 STATS LOCAL VITERBI -7.6990 0.71934 STATS LOCAL FORWARD -4.2620 0.71934 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.55028 1.30282 1.33321 1.37666 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 0.00000 * 1 2.68973 1.71652 2.75247 0.37304 1 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 2 2.96311 3.61046 0.11471 3.51750 2 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 3 3.45893 0.12717 3.50729 2.84776 3 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 4 3.45893 0.12717 3.50729 2.84776 4 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 5 3.45893 0.12717 3.50729 2.84776 5 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 6 3.11130 2.60957 3.15859 0.17506 6 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 7 3.11130 2.60957 3.15859 0.17506 7 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 8 2.96311 3.61046 0.11471 3.51750 8 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 9 2.96311 3.61046 0.11471 3.51750 9 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 10 2.96311 3.61046 0.11471 3.51750 10 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 11 3.45893 0.12717 3.50729 2.84776 11 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 12 3.45893 0.12717 3.50729 2.84776 12 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 13 0.13897 3.40269 2.81647 3.30648 13 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 14 3.45893 0.12717 3.50729 2.84776 14 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 15 3.11130 2.60957 3.15859 0.17506 15 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 16 3.45893 0.12717 3.50729 2.84776 16 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 17 3.45893 0.12717 3.50729 2.84776 17 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 18 3.45893 0.12717 3.50729 2.84776 18 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 19 0.13897 3.40269 2.81647 3.30648 19 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 20 0.13897 3.40269 2.81647 3.30648 20 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 21 3.11130 2.60957 3.15859 0.17506 21 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 22 2.96311 3.61046 0.11471 3.51750 22 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 23 2.96311 3.61046 0.11471 3.51750 23 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 24 3.11130 2.60957 3.15859 0.17506 24 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 25 2.37392 1.92307 0.39398 2.44920 25 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 26 3.11130 2.60957 3.15859 0.17506 26 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 27 2.96311 3.61046 0.11471 3.51750 27 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 28 3.45893 0.12717 3.50729 2.84776 28 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 29 3.11130 2.60957 3.15859 0.17506 29 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 30 2.96311 3.61046 0.11471 3.51750 30 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 31 3.45893 0.12717 3.50729 2.84776 31 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 32 0.13897 3.40269 2.81647 3.30648 32 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 33 3.11130 2.60957 3.15859 0.17506 33 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 34 3.11130 2.60957 3.15859 0.17506 34 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 35 3.11130 2.60957 3.15859 0.17506 35 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 36 2.96311 3.61046 0.11471 3.51750 36 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 37 0.13897 3.40269 2.81647 3.30648 37 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 38 0.13897 3.40269 2.81647 3.30648 38 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 39 0.13897 3.40269 2.81647 3.30648 39 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 40 3.45893 0.12717 3.50729 2.84776 40 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 41 0.13897 3.40269 2.81647 3.30648 41 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 42 2.96311 3.61046 0.11471 3.51750 42 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 43 0.13897 3.40269 2.81647 3.30648 43 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 44 3.11130 2.60957 3.15859 0.17506 44 - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 45 2.96311 3.61046 0.11471 3.51750 45 - - 1.38629 1.38629 1.38629 1.38629 0.01837 4.00616 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_elevenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:49:36 2012 NSEQ 2 EFFN 2.000000 CKSUM 1545265678 STATS LOCAL MSV -7.4771 0.72838 STATS LOCAL VITERBI -8.1550 0.72838 STATS LOCAL FORWARD -3.6556 0.72838 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.43027 1.45972 1.24052 1.43038 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.53331 3.02441 0.20344 2.88069 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23862 2.84929 2.43386 2.70756 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.23862 2.84929 2.43386 2.70756 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.57915 2.25909 2.64442 0.28946 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.92825 2.28391 0.95698 2.13014 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.23862 2.84929 2.43386 2.70756 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.81865 0.23582 2.88868 2.35662 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_fifteena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:54:25 2012 NSEQ 25 EFFN 3.335571 CKSUM 500672324 STATS LOCAL MSV -7.9016 0.71932 STATS LOCAL VITERBI -7.7396 0.71932 STATS LOCAL FORWARD -4.0992 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72722 1.31020 1.32957 1.24527 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 0.00000 * 1 3.09277 2.59779 3.14076 0.17801 1 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 2 2.95040 3.59193 0.11670 3.49704 2 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 3 2.95040 3.59193 0.11670 3.49704 3 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 4 3.43785 0.12964 3.48711 2.83245 4 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 5 2.95040 3.59193 0.11670 3.49704 5 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 6 3.43785 0.12964 3.48711 2.83245 6 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 7 3.09277 2.59779 3.14076 0.17801 7 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 8 2.54795 2.32143 0.27713 2.72309 8 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 9 3.09277 2.59779 3.14076 0.17801 9 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 10 3.09277 2.59779 3.14076 0.17801 10 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 11 2.95040 3.59193 0.11670 3.49704 11 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 12 2.95040 3.59193 0.11670 3.49704 12 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 13 2.95040 3.59193 0.11670 3.49704 13 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 14 0.14135 3.38438 2.80460 3.28643 14 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 15 3.43785 0.12964 3.48711 2.83245 15 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 16 3.09277 2.59779 3.14076 0.17801 16 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 17 0.14135 3.38438 2.80460 3.28643 17 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 18 3.43785 0.12964 3.48711 2.83245 18 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 19 3.43785 0.12964 3.48711 2.83245 19 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 20 3.43785 0.12964 3.48711 2.83245 20 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 21 0.14135 3.38438 2.80460 3.28643 21 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 22 0.14135 3.38438 2.80460 3.28643 22 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 23 3.43785 0.12964 3.48711 2.83245 23 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 24 0.14135 3.38438 2.80460 3.28643 24 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 25 2.95040 3.59193 0.11670 3.49704 25 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 26 3.43785 0.12964 3.48711 2.83245 26 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 27 0.14135 3.38438 2.80460 3.28643 27 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 28 3.43785 0.12964 3.48711 2.83245 28 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 29 2.95040 3.59193 0.11670 3.49704 29 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 30 3.09277 2.59779 3.14076 0.17801 30 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 31 3.43785 0.12964 3.48711 2.83245 31 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 32 3.09277 2.59779 3.14076 0.17801 32 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 33 2.95040 3.59193 0.11670 3.49704 33 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 34 3.09277 2.59779 3.14076 0.17801 34 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 35 3.09277 2.59779 3.14076 0.17801 35 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 36 3.09277 2.59779 3.14076 0.17801 36 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 37 3.43785 0.12964 3.48711 2.83245 37 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 38 0.14135 3.38438 2.80460 3.28643 38 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 39 2.95040 3.59193 0.11670 3.49704 39 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 40 3.09277 2.59779 3.14076 0.17801 40 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 41 2.95040 3.59193 0.11670 3.49704 41 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 42 3.09277 2.59779 3.14076 0.17801 42 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 43 3.43785 0.12964 3.48711 2.83245 43 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 44 3.09277 2.59779 3.14076 0.17801 44 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01378 4.01378 1.46634 0.26236 1.09861 0.40547 45 3.09277 2.59779 3.14076 0.17801 45 - - 1.38629 1.38629 1.38629 1.38629 0.01857 3.99555 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_fifteenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:54:32 2012 NSEQ 16 EFFN 3.605469 CKSUM 2100785171 STATS LOCAL MSV -7.3453 0.71933 STATS LOCAL VITERBI -7.7419 0.71933 STATS LOCAL FORWARD -4.2360 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.83616 1.45443 1.24425 1.14294 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 0.00000 * 1 3.17670 2.65106 3.22145 0.16511 1 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 2 3.00689 3.67468 0.10808 3.58855 2 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 3 3.00689 3.67468 0.10808 3.58855 3 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 4 3.53238 0.11897 3.57752 2.90072 4 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 5 3.00689 3.67468 0.10808 3.58855 5 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 6 3.53238 0.11897 3.57752 2.90072 6 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 7 3.17670 2.65106 3.22145 0.16511 7 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 8 3.00689 3.67468 0.10808 3.58855 8 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 9 3.17670 2.65106 3.22145 0.16511 9 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 10 3.17670 2.65106 3.22145 0.16511 10 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 11 3.00689 3.67468 0.10808 3.58855 11 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 12 3.00689 3.67468 0.10808 3.58855 12 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 13 3.00689 3.67468 0.10808 3.58855 13 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 14 0.13100 3.46667 2.85777 3.37664 14 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 15 3.17670 2.65106 3.22145 0.16511 15 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 16 3.17670 2.65106 3.22145 0.16511 16 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 17 0.13100 3.46667 2.85777 3.37664 17 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 18 2.46082 0.82174 2.53269 0.92754 18 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 19 3.53238 0.11897 3.57752 2.90072 19 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 20 2.46082 0.82174 2.53269 0.92754 20 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 21 3.00689 3.67468 0.10808 3.58855 21 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 22 0.24265 3.10343 2.11836 2.98922 22 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 23 3.53238 0.11897 3.57752 2.90072 23 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 24 0.13100 3.46667 2.85777 3.37664 24 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 25 3.00689 3.67468 0.10808 3.58855 25 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 26 3.53238 0.11897 3.57752 2.90072 26 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 27 0.13100 3.46667 2.85777 3.37664 27 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 28 3.53238 0.11897 3.57752 2.90072 28 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 29 3.00689 3.67468 0.10808 3.58855 29 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 30 3.17670 2.65106 3.22145 0.16511 30 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 31 3.53238 0.11897 3.57752 2.90072 31 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 32 3.17670 2.65106 3.22145 0.16511 32 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 33 3.00689 3.67468 0.10808 3.58855 33 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 34 3.17670 2.65106 3.22145 0.16511 34 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 35 3.17670 2.65106 3.22145 0.16511 35 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 36 3.17670 2.65106 3.22145 0.16511 36 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 37 3.53238 0.11897 3.57752 2.90072 37 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 38 0.13100 3.46667 2.85777 3.37664 38 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 39 3.00689 3.67468 0.10808 3.58855 39 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 40 3.17670 2.65106 3.22145 0.16511 40 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 41 3.00689 3.67468 0.10808 3.58855 41 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 42 3.17670 2.65106 3.22145 0.16511 42 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 43 3.53238 0.11897 3.57752 2.90072 43 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 44 3.17670 2.65106 3.22145 0.16511 44 - - 1.38629 1.38629 1.38629 1.38629 0.03506 4.06139 4.06139 1.46634 0.26236 1.09861 0.40547 45 3.17670 2.65106 3.22145 0.16511 45 - - 1.38629 1.38629 1.38629 1.38629 0.01768 4.04401 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_fifteenc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:54:38 2012 NSEQ 6 EFFN 3.237305 CKSUM 442242702 STATS LOCAL MSV -8.0313 0.71932 STATS LOCAL VITERBI -7.8597 0.71932 STATS LOCAL FORWARD -3.7770 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.05939 1.25473 1.20217 1.24906 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 0.00000 * 1 3.06071 2.57738 3.10992 0.18324 1 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 2 2.92809 3.55954 0.12029 3.46131 2 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 3 2.92809 3.55954 0.12029 3.46131 3 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 4 3.40113 0.13409 3.45193 2.80566 4 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 5 2.92809 3.55954 0.12029 3.46131 5 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 6 3.40113 0.13409 3.45193 2.80566 6 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 7 3.40113 0.13409 3.45193 2.80566 7 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 8 2.92809 3.55954 0.12029 3.46131 8 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 9 3.40113 0.13409 3.45193 2.80566 9 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 10 3.06071 2.57738 3.10992 0.18324 10 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 11 2.92809 3.55954 0.12029 3.46131 11 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 12 2.92809 3.55954 0.12029 3.46131 12 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 13 2.92809 3.55954 0.12029 3.46131 13 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 14 0.14561 3.35254 2.78388 3.25159 14 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 15 3.06071 2.57738 3.10992 0.18324 15 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 16 3.06071 2.57738 3.10992 0.18324 16 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 17 3.06071 2.57738 3.10992 0.18324 17 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 18 3.40113 0.13409 3.45193 2.80566 18 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 19 3.40113 0.13409 3.45193 2.80566 19 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 20 3.40113 0.13409 3.45193 2.80566 20 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 21 2.92809 3.55954 0.12029 3.46131 21 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 22 2.92809 3.55954 0.12029 3.46131 22 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 23 3.40113 0.13409 3.45193 2.80566 23 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 24 0.14561 3.35254 2.78388 3.25159 24 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 25 2.92809 3.55954 0.12029 3.46131 25 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 26 3.40113 0.13409 3.45193 2.80566 26 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 27 0.14561 3.35254 2.78388 3.25159 27 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 28 3.40113 0.13409 3.45193 2.80566 28 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 29 2.92809 3.55954 0.12029 3.46131 29 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 30 3.06071 2.57738 3.10992 0.18324 30 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 31 3.40113 0.13409 3.45193 2.80566 31 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 32 3.06071 2.57738 3.10992 0.18324 32 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 33 2.92809 3.55954 0.12029 3.46131 33 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 34 3.06071 2.57738 3.10992 0.18324 34 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 35 3.06071 2.57738 3.10992 0.18324 35 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 36 3.06071 2.57738 3.10992 0.18324 36 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 37 3.40113 0.13409 3.45193 2.80566 37 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 38 0.14561 3.35254 2.78388 3.25159 38 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 39 2.92809 3.55954 0.12029 3.46131 39 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 40 3.06071 2.57738 3.10992 0.18324 40 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 41 2.92809 3.55954 0.12029 3.46131 41 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 42 3.06071 2.57738 3.10992 0.18324 42 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 43 3.40113 0.13409 3.45193 2.80566 43 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 44 3.06071 2.57738 3.10992 0.18324 44 - - 1.38629 1.38629 1.38629 1.38629 0.03748 3.99587 3.99587 1.46634 0.26236 1.09861 0.40547 45 3.06071 2.57738 3.10992 0.18324 45 - - 1.38629 1.38629 1.38629 1.38629 0.01891 3.97731 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_fifteend_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:54:44 2012 NSEQ 7 EFFN 3.298340 CKSUM 2869266091 STATS LOCAL MSV -8.1459 0.71931 STATS LOCAL VITERBI -7.9055 0.71931 STATS LOCAL FORWARD -3.8325 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.06625 1.24709 1.32281 1.14065 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 0.00000 * 1 2.94206 3.57981 0.11803 3.48366 1 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 2 2.94206 3.57981 0.11803 3.48366 2 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 3 3.42409 0.13129 3.47393 2.82243 3 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 4 2.94206 3.57981 0.11803 3.48366 4 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 5 3.42409 0.13129 3.47393 2.82243 5 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 6 3.08072 2.59012 3.12917 0.17995 6 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 7 3.08072 2.59012 3.12917 0.17995 7 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 8 3.42409 0.13129 3.47393 2.82243 8 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 9 3.08072 2.59012 3.12917 0.17995 9 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 10 2.94206 3.57981 0.11803 3.48366 10 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 11 2.94206 3.57981 0.11803 3.48366 11 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 12 2.94206 3.57981 0.11803 3.48366 12 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 13 0.14293 3.37244 2.79684 3.27336 13 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 14 3.08072 2.59012 3.12917 0.17995 14 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 15 3.08072 2.59012 3.12917 0.17995 15 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 16 3.08072 2.59012 3.12917 0.17995 16 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 17 3.08072 2.59012 3.12917 0.17995 17 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 18 3.42409 0.13129 3.47393 2.82243 18 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 19 3.42409 0.13129 3.47393 2.82243 19 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 20 3.42409 0.13129 3.47393 2.82243 20 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 21 3.42409 0.13129 3.47393 2.82243 21 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 22 2.94206 3.57981 0.11803 3.48366 22 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 23 3.08072 2.59012 3.12917 0.17995 23 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 24 0.14293 3.37244 2.79684 3.27336 24 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 25 2.94206 3.57981 0.11803 3.48366 25 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 26 3.42409 0.13129 3.47393 2.82243 26 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 27 0.14293 3.37244 2.79684 3.27336 27 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 28 3.42409 0.13129 3.47393 2.82243 28 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 29 2.94206 3.57981 0.11803 3.48366 29 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 30 3.08072 2.59012 3.12917 0.17995 30 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 31 3.42409 0.13129 3.47393 2.82243 31 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 32 3.08072 2.59012 3.12917 0.17995 32 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 33 2.94206 3.57981 0.11803 3.48366 33 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 34 3.08072 2.59012 3.12917 0.17995 34 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 35 3.08072 2.59012 3.12917 0.17995 35 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 36 3.08072 2.59012 3.12917 0.17995 36 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 37 3.42409 0.13129 3.47393 2.82243 37 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 38 0.14293 3.37244 2.79684 3.27336 38 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 39 2.94206 3.57981 0.11803 3.48366 39 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 40 3.08072 2.59012 3.12917 0.17995 40 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 41 2.94206 3.57981 0.11803 3.48366 41 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 42 3.08072 2.59012 3.12917 0.17995 42 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 43 3.42409 0.13129 3.47393 2.82243 43 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 44 3.08072 2.59012 3.12917 0.17995 44 - - 1.38629 1.38629 1.38629 1.38629 0.03705 4.00703 4.00703 1.46634 0.26236 1.09861 0.40547 45 3.42409 0.13129 3.47393 2.82243 45 - - 1.38629 1.38629 1.38629 1.38629 0.01870 3.98868 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_fifteene_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:54:49 2012 NSEQ 14 EFFN 3.612793 CKSUM 3599068610 STATS LOCAL MSV -7.2495 0.71932 STATS LOCAL VITERBI -7.7818 0.71932 STATS LOCAL FORWARD -3.9403 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.01810 1.29360 1.24959 1.18356 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 0.00000 * 1 3.17890 2.65245 3.22356 0.16478 1 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 2 3.00833 3.67681 0.10787 3.59090 2 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 3 3.00833 3.67681 0.10787 3.59090 3 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 4 3.53482 0.11871 3.57985 2.90247 4 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 5 3.00833 3.67681 0.10787 3.59090 5 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 6 3.53482 0.11871 3.57985 2.90247 6 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 7 3.17890 2.65245 3.22356 0.16478 7 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 8 3.00833 3.67681 0.10787 3.59090 8 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 9 3.53482 0.11871 3.57985 2.90247 9 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 10 0.90681 1.49378 2.06689 1.40614 10 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 11 3.00833 3.67681 0.10787 3.59090 11 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 12 3.00833 3.67681 0.10787 3.59090 12 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 13 3.00833 3.67681 0.10787 3.59090 13 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 14 0.13074 3.46880 2.85915 3.37898 14 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 15 2.82437 1.87604 2.88303 0.31267 15 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 16 3.17890 2.65245 3.22356 0.16478 16 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 17 3.17890 2.65245 3.22356 0.16478 17 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 18 3.53482 0.11871 3.57985 2.90247 18 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 19 2.99789 0.26576 3.06012 1.99066 19 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 20 3.53482 0.11871 3.57985 2.90247 20 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 21 3.17890 2.65245 3.22356 0.16478 21 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 22 3.00833 3.67681 0.10787 3.59090 22 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 23 3.53482 0.11871 3.57985 2.90247 23 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 24 0.13074 3.46880 2.85915 3.37898 24 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 25 3.00833 3.67681 0.10787 3.59090 25 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 26 3.53482 0.11871 3.57985 2.90247 26 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 27 0.13074 3.46880 2.85915 3.37898 27 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 28 3.53482 0.11871 3.57985 2.90247 28 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 29 3.00833 3.67681 0.10787 3.59090 29 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 30 3.17890 2.65245 3.22356 0.16478 30 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 31 3.53482 0.11871 3.57985 2.90247 31 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 32 3.17890 2.65245 3.22356 0.16478 32 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 33 3.00833 3.67681 0.10787 3.59090 33 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 34 3.17890 2.65245 3.22356 0.16478 34 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 35 3.17890 2.65245 3.22356 0.16478 35 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 36 3.17890 2.65245 3.22356 0.16478 36 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 37 3.53482 0.11871 3.57985 2.90247 37 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 38 0.13074 3.46880 2.85915 3.37898 38 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 39 3.00833 3.67681 0.10787 3.59090 39 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 40 3.17890 2.65245 3.22356 0.16478 40 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 41 3.00833 3.67681 0.10787 3.59090 41 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 42 3.17890 2.65245 3.22356 0.16478 42 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 43 3.53482 0.11871 3.57985 2.90247 43 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 44 3.17890 2.65245 3.22356 0.16478 44 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 45 2.82437 1.87604 2.88303 0.31267 45 - - 1.38629 1.38629 1.38629 1.38629 0.01766 4.04529 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_fifteenf_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:54:55 2012 NSEQ 3 EFFN 3.000000 CKSUM 4191745197 STATS LOCAL MSV -8.0134 0.72148 STATS LOCAL VITERBI -7.9970 0.72148 STATS LOCAL FORWARD -3.9305 0.72148 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.88034 1.41850 1.31106 1.09109 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.86982 3.47591 0.13017 3.36931 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 0.15719 3.27118 2.73043 3.16274 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 3.30705 0.14631 3.36166 2.73626 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 1.30792 2.11152 2.18422 0.70118 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.97980 2.52563 3.03204 0.19727 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.86982 3.47591 0.13017 3.36931 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.86982 3.47591 0.13017 3.36931 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 0.15719 3.27118 2.73043 3.16274 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.42752 1.34012 2.49742 0.56628 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.97980 2.52563 3.03204 0.19727 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.30705 0.14631 3.36166 2.73626 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.97980 2.52563 3.03204 0.19727 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 3.30705 0.14631 3.36166 2.73626 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.30705 0.14631 3.36166 2.73626 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.97980 2.52563 3.03204 0.19727 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.97980 2.52563 3.03204 0.19727 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.86982 3.47591 0.13017 3.36931 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 0.15719 3.27118 2.73043 3.16274 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.86982 3.47591 0.13017 3.36931 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.97980 2.52563 3.03204 0.19727 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.97980 2.52563 3.03204 0.19727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 3.30705 0.14631 3.36166 2.73626 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 0.15719 3.27118 2.73043 3.16274 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.86982 3.47591 0.13017 3.36931 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.97980 2.52563 3.03204 0.19727 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.30705 0.14631 3.36166 2.73626 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.97980 2.52563 3.03204 0.19727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_fivea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:47:57 2012 NSEQ 2 EFFN 2.000000 CKSUM 630474797 STATS LOCAL MSV -7.1031 0.72876 STATS LOCAL VITERBI -8.2897 0.72876 STATS LOCAL FORWARD -3.3234 0.72876 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.65817 1.49734 1.37580 1.09916 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.57915 2.25909 2.64442 0.28946 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.81865 0.23582 2.88868 2.35662 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.57915 2.25909 2.64442 0.28946 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.57915 2.25909 2.64442 0.28946 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_fiveb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:48:04 2012 NSEQ 9 EFFN 3.361816 CKSUM 2438455031 STATS LOCAL MSV -8.0408 0.71932 STATS LOCAL VITERBI -7.6304 0.71932 STATS LOCAL FORWARD -4.1626 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.73808 1.37131 1.38409 1.14001 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 0.00000 * 1 3.44745 0.12851 3.49630 2.83942 1 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 2 0.24046 3.06994 2.16140 2.95373 2 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 3 3.44745 0.12851 3.49630 2.83942 3 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 4 3.10119 2.60314 3.14886 0.17666 4 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 5 3.44745 0.12851 3.49630 2.83942 5 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 6 3.10119 2.60314 3.14886 0.17666 6 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 7 3.10119 2.60314 3.14886 0.17666 7 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 8 2.95619 3.60037 0.11579 3.50635 8 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 9 2.95619 3.60037 0.11579 3.50635 9 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 10 2.95619 3.60037 0.11579 3.50635 10 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 11 0.14026 3.39271 2.81000 3.29556 11 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 12 3.44745 0.12851 3.49630 2.83942 12 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 13 0.14026 3.39271 2.81000 3.29556 13 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 14 3.44745 0.12851 3.49630 2.83942 14 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 15 2.95619 3.60037 0.11579 3.50635 15 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 16 3.44745 0.12851 3.49630 2.83942 16 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 17 3.44745 0.12851 3.49630 2.83942 17 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 18 3.10119 2.60314 3.14886 0.17666 18 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 19 2.95619 3.60037 0.11579 3.50635 19 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 20 0.14026 3.39271 2.81000 3.29556 20 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 21 2.95619 3.60037 0.11579 3.50635 21 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 22 0.14026 3.39271 2.81000 3.29556 22 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 23 2.95619 3.60037 0.11579 3.50635 23 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 24 3.10119 2.60314 3.14886 0.17666 24 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 25 0.14026 3.39271 2.81000 3.29556 25 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 26 3.10119 2.60314 3.14886 0.17666 26 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 27 2.95619 3.60037 0.11579 3.50635 27 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 28 3.10119 2.60314 3.14886 0.17666 28 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 29 3.44745 0.12851 3.49630 2.83942 29 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 30 3.10119 2.60314 3.14886 0.17666 30 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 31 2.95619 3.60037 0.11579 3.50635 31 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 32 3.44745 0.12851 3.49630 2.83942 32 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 33 3.10119 2.60314 3.14886 0.17666 33 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 34 3.10119 2.60314 3.14886 0.17666 34 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 35 3.44745 0.12851 3.49630 2.83942 35 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 36 0.14026 3.39271 2.81000 3.29556 36 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 37 2.95619 3.60037 0.11579 3.50635 37 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 38 3.10119 2.60314 3.14886 0.17666 38 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 39 2.95619 3.60037 0.11579 3.50635 39 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 40 3.44745 0.12851 3.49630 2.83942 40 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 41 3.10119 2.60314 3.14886 0.17666 41 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 42 3.10119 2.60314 3.14886 0.17666 42 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 43 3.10119 2.60314 3.14886 0.17666 43 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 44 3.10119 2.60314 3.14886 0.17666 44 - - 1.38629 1.38629 1.38629 1.38629 0.03662 4.01851 4.01851 1.46634 0.26236 1.09861 0.40547 45 3.10119 2.60314 3.14886 0.17666 45 - - 1.38629 1.38629 1.38629 1.38629 0.01848 4.00037 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_foura_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:47:28 2012 NSEQ 8 EFFN 3.347656 CKSUM 1565564952 STATS LOCAL MSV -8.1688 0.71931 STATS LOCAL VITERBI -7.7321 0.71931 STATS LOCAL FORWARD -4.0847 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72680 1.38541 1.31835 1.18958 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 0.00000 * 1 3.44228 0.12912 3.49135 2.83567 1 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 2 2.95307 3.59583 0.11628 3.50134 2 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 3 2.96273 0.26402 3.02577 2.02612 3 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 4 3.09665 2.60026 3.14450 0.17739 4 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 5 3.44228 0.12912 3.49135 2.83567 5 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 6 3.09665 2.60026 3.14450 0.17739 6 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 7 3.09665 2.60026 3.14450 0.17739 7 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 8 2.95307 3.59583 0.11628 3.50134 8 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 9 2.95307 3.59583 0.11628 3.50134 9 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 10 2.95307 3.59583 0.11628 3.50134 10 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 11 0.14085 3.38823 2.80709 3.29064 11 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 12 3.09665 2.60026 3.14450 0.17739 12 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 13 0.14085 3.38823 2.80709 3.29064 13 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 14 3.09665 2.60026 3.14450 0.17739 14 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 15 2.95307 3.59583 0.11628 3.50134 15 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 16 3.44228 0.12912 3.49135 2.83567 16 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 17 3.44228 0.12912 3.49135 2.83567 17 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 18 3.09665 2.60026 3.14450 0.17739 18 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 19 2.95307 3.59583 0.11628 3.50134 19 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 20 0.14085 3.38823 2.80709 3.29064 20 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 21 2.95307 3.59583 0.11628 3.50134 21 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 22 0.14085 3.38823 2.80709 3.29064 22 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 23 2.95307 3.59583 0.11628 3.50134 23 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 24 3.44228 0.12912 3.49135 2.83567 24 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 25 0.14085 3.38823 2.80709 3.29064 25 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 26 3.09665 2.60026 3.14450 0.17739 26 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 27 2.95307 3.59583 0.11628 3.50134 27 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 28 3.09665 2.60026 3.14450 0.17739 28 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 29 3.44228 0.12912 3.49135 2.83567 29 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 30 3.09665 2.60026 3.14450 0.17739 30 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 31 2.95307 3.59583 0.11628 3.50134 31 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 32 3.44228 0.12912 3.49135 2.83567 32 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 33 3.09665 2.60026 3.14450 0.17739 33 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 34 3.09665 2.60026 3.14450 0.17739 34 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 35 3.44228 0.12912 3.49135 2.83567 35 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 36 0.14085 3.38823 2.80709 3.29064 36 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 37 2.95307 3.59583 0.11628 3.50134 37 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 38 3.09665 2.60026 3.14450 0.17739 38 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 39 2.95307 3.59583 0.11628 3.50134 39 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 40 3.44228 0.12912 3.49135 2.83567 40 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 41 3.09665 2.60026 3.14450 0.17739 41 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 42 3.09665 2.60026 3.14450 0.17739 42 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 43 3.44228 0.12912 3.49135 2.83567 43 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 44 3.09665 2.60026 3.14450 0.17739 44 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.01596 4.01596 1.46634 0.26236 1.09861 0.40547 45 0.14085 3.38823 2.80709 3.29064 45 - - 1.38629 1.38629 1.38629 1.38629 0.01853 3.99777 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_fourb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:47:35 2012 NSEQ 14 EFFN 3.325684 CKSUM 2052394201 STATS LOCAL MSV -8.1103 0.71933 STATS LOCAL VITERBI -7.7143 0.71933 STATS LOCAL FORWARD -3.9821 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.63564 1.44468 1.38366 1.14353 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 0.00000 * 1 2.94820 3.58873 0.11705 3.49350 1 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 2 3.43422 0.13008 3.48363 2.82980 2 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 3 0.14177 3.38122 2.80255 3.28298 3 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 4 3.43422 0.13008 3.48363 2.82980 4 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 5 3.08958 2.59576 3.13770 0.17852 5 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 6 3.43422 0.13008 3.48363 2.82980 6 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 7 3.08958 2.59576 3.13770 0.17852 7 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 8 3.08958 2.59576 3.13770 0.17852 8 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 9 2.94820 3.58873 0.11705 3.49350 9 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 10 2.94820 3.58873 0.11705 3.49350 10 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 11 2.94820 3.58873 0.11705 3.49350 11 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 12 0.14177 3.38122 2.80255 3.28298 12 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 13 3.08958 2.59576 3.13770 0.17852 13 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 14 3.08958 2.59576 3.13770 0.17852 14 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 15 3.08958 2.59576 3.13770 0.17852 15 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 16 3.43422 0.13008 3.48363 2.82980 16 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 17 3.43422 0.13008 3.48363 2.82980 17 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 18 3.08958 2.59576 3.13770 0.17852 18 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 19 2.94820 3.58873 0.11705 3.49350 19 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 20 0.14177 3.38122 2.80255 3.28298 20 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 21 2.94820 3.58873 0.11705 3.49350 21 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 22 0.14177 3.38122 2.80255 3.28298 22 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 23 2.94820 3.58873 0.11705 3.49350 23 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 24 3.08958 2.59576 3.13770 0.17852 24 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 25 0.14177 3.38122 2.80255 3.28298 25 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 26 3.08958 2.59576 3.13770 0.17852 26 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 27 2.94820 3.58873 0.11705 3.49350 27 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 28 3.08958 2.59576 3.13770 0.17852 28 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 29 3.43422 0.13008 3.48363 2.82980 29 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 30 3.08958 2.59576 3.13770 0.17852 30 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 31 2.94820 3.58873 0.11705 3.49350 31 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 32 3.43422 0.13008 3.48363 2.82980 32 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 33 3.08958 2.59576 3.13770 0.17852 33 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 34 3.08958 2.59576 3.13770 0.17852 34 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 35 3.43422 0.13008 3.48363 2.82980 35 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 36 0.14177 3.38122 2.80255 3.28298 36 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 37 2.94820 3.58873 0.11705 3.49350 37 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 38 3.08958 2.59576 3.13770 0.17852 38 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 39 2.94820 3.58873 0.11705 3.49350 39 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 40 3.43422 0.13008 3.48363 2.82980 40 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 41 3.08958 2.59576 3.13770 0.17852 41 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 42 3.08958 2.59576 3.13770 0.17852 42 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 43 0.14177 3.38122 2.80255 3.28298 43 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 44 0.14177 3.38122 2.80255 3.28298 44 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01199 4.01199 1.46634 0.26236 1.09861 0.40547 45 3.43422 0.13008 3.48363 2.82980 45 - - 1.38629 1.38629 1.38629 1.38629 0.01860 3.99373 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_fourc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:47:41 2012 NSEQ 7 EFFN 3.612793 CKSUM 277781406 STATS LOCAL MSV -7.4130 0.71933 STATS LOCAL VITERBI -7.7029 0.71933 STATS LOCAL FORWARD -3.9206 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.78948 1.40356 1.28233 1.17168 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 0.00000 * 1 3.00833 3.67681 0.10787 3.59090 1 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 2 3.53482 0.11871 3.57985 2.90247 2 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 3 0.13074 3.46880 2.85915 3.37898 3 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 4 3.53482 0.11871 3.57985 2.90247 4 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 5 2.83792 1.90216 2.89608 0.30521 5 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 6 3.53482 0.11871 3.57985 2.90247 6 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 7 3.17890 2.65245 3.22356 0.16478 7 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 8 2.46560 0.79961 2.53748 0.95069 8 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 9 3.00833 3.67681 0.10787 3.59090 9 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 10 3.00833 3.67681 0.10787 3.59090 10 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 11 3.00833 3.67681 0.10787 3.59090 11 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 12 1.03144 2.58673 0.73117 2.44303 12 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 13 3.17890 2.65245 3.22356 0.16478 13 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 14 3.17890 2.65245 3.22356 0.16478 14 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 15 3.17890 2.65245 3.22356 0.16478 15 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 16 3.53482 0.11871 3.57985 2.90247 16 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 17 3.53482 0.11871 3.57985 2.90247 17 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 18 3.17890 2.65245 3.22356 0.16478 18 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 19 3.00833 3.67681 0.10787 3.59090 19 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 20 0.13074 3.46880 2.85915 3.37898 20 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 21 3.00833 3.67681 0.10787 3.59090 21 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 22 0.13074 3.46880 2.85915 3.37898 22 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 23 3.00833 3.67681 0.10787 3.59090 23 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 24 3.17890 2.65245 3.22356 0.16478 24 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 25 0.13074 3.46880 2.85915 3.37898 25 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 26 3.17890 2.65245 3.22356 0.16478 26 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 27 3.00833 3.67681 0.10787 3.59090 27 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 28 3.17890 2.65245 3.22356 0.16478 28 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 29 3.53482 0.11871 3.57985 2.90247 29 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 30 3.17890 2.65245 3.22356 0.16478 30 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 31 3.00833 3.67681 0.10787 3.59090 31 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 32 3.53482 0.11871 3.57985 2.90247 32 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 33 3.17890 2.65245 3.22356 0.16478 33 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 34 3.17890 2.65245 3.22356 0.16478 34 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 35 3.53482 0.11871 3.57985 2.90247 35 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 36 0.13074 3.46880 2.85915 3.37898 36 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 37 3.00833 3.67681 0.10787 3.59090 37 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 38 3.17890 2.65245 3.22356 0.16478 38 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 39 3.00833 3.67681 0.10787 3.59090 39 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 40 3.53482 0.11871 3.57985 2.90247 40 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 41 3.17890 2.65245 3.22356 0.16478 41 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 42 3.17890 2.65245 3.22356 0.16478 42 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 43 0.13074 3.46880 2.85915 3.37898 43 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 44 3.00833 3.67681 0.10787 3.59090 44 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06265 4.06265 1.46634 0.26236 1.09861 0.40547 45 3.53482 0.11871 3.57985 2.90247 45 - - 1.38629 1.38629 1.38629 1.38629 0.01766 4.04529 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_fourd_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:47:47 2012 NSEQ 3 EFFN 3.000000 CKSUM 945311865 STATS LOCAL MSV -8.1412 0.72023 STATS LOCAL VITERBI -7.6990 0.72023 STATS LOCAL FORWARD -3.8381 0.72023 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.81287 1.32079 1.20046 1.31365 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.86982 3.47591 0.13017 3.36931 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.86982 3.47591 0.13017 3.36931 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.86982 3.47591 0.13017 3.36931 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.97980 2.52563 3.03204 0.19727 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.97980 2.52563 3.03204 0.19727 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 3.30705 0.14631 3.36166 2.73626 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 0.15719 3.27118 2.73043 3.16274 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.86982 3.47591 0.13017 3.36931 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.97980 2.52563 3.03204 0.19727 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.97980 2.52563 3.03204 0.19727 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.15719 3.27118 2.73043 3.16274 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 3.30705 0.14631 3.36166 2.73626 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.97980 2.52563 3.03204 0.19727 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.97980 2.52563 3.03204 0.19727 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.86982 3.47591 0.13017 3.36931 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_fourteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:54:14 2012 NSEQ 19 EFFN 3.975342 CKSUM 4093622679 STATS LOCAL MSV -7.2188 0.71932 STATS LOCAL VITERBI -7.4754 0.71932 STATS LOCAL FORWARD -4.0594 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.44172 1.86242 1.47496 0.96917 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 0.00000 * 1 0.11939 3.56822 2.92300 3.48820 1 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 2 0.11939 3.56822 2.92300 3.48820 2 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 3 3.07459 3.77484 0.09858 3.69966 3 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 4 3.07459 3.77484 0.09858 3.69966 4 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 5 3.28256 2.71819 3.32315 0.15032 5 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 6 0.11939 3.56822 2.92300 3.48820 6 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 7 3.64801 0.10726 3.68789 2.98308 7 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 8 3.28256 2.71819 3.32315 0.15032 8 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 9 3.28256 2.71819 3.32315 0.15032 9 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 10 3.64801 0.10726 3.68789 2.98308 10 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 11 3.28256 2.71819 3.32315 0.15032 11 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 12 0.11939 3.56822 2.92300 3.48820 12 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 13 0.11939 3.56822 2.92300 3.48820 13 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 14 0.11939 3.56822 2.92300 3.48820 14 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 15 3.28256 2.71819 3.32315 0.15032 15 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 16 3.28256 2.71819 3.32315 0.15032 16 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 17 1.36120 0.63933 2.33750 2.12501 17 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 18 3.28256 2.71819 3.32315 0.15032 18 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 19 3.07459 3.77484 0.09858 3.69966 19 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 20 3.07459 3.77484 0.09858 3.69966 20 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 21 3.07459 3.77484 0.09858 3.69966 21 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 22 0.11939 3.56822 2.92300 3.48820 22 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 23 3.07459 3.77484 0.09858 3.69966 23 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 24 3.28256 2.71819 3.32315 0.15032 24 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 25 0.11939 3.56822 2.92300 3.48820 25 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 26 3.28256 2.71819 3.32315 0.15032 26 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 27 3.07459 3.77484 0.09858 3.69966 27 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 28 3.28256 2.71819 3.32315 0.15032 28 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 29 3.28256 2.71819 3.32315 0.15032 29 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 30 3.28256 2.71819 3.32315 0.15032 30 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 31 0.11939 3.56822 2.92300 3.48820 31 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 32 2.20880 2.30847 0.72114 1.18890 32 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 33 3.28256 2.71819 3.32315 0.15032 33 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 34 3.28256 2.71819 3.32315 0.15032 34 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 35 3.64801 0.10726 3.68789 2.98308 35 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 36 0.11939 3.56822 2.92300 3.48820 36 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 37 3.07459 3.77484 0.09858 3.69966 37 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 38 3.28256 2.71819 3.32315 0.15032 38 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 39 3.07459 3.77484 0.09858 3.69966 39 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 40 3.64801 0.10726 3.68789 2.98308 40 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 41 3.28256 2.71819 3.32315 0.15032 41 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 42 3.28256 2.71819 3.32315 0.15032 42 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 43 2.57102 2.40862 1.92099 0.37522 43 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 44 3.28256 2.71819 3.32315 0.15032 44 - - 1.38629 1.38629 1.38629 1.38629 0.03292 4.12315 4.12315 1.46634 0.26236 1.09861 0.40547 45 2.86994 0.35159 2.93552 1.67865 45 - - 1.38629 1.38629 1.38629 1.38629 0.01660 4.10682 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_nine_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:49:16 2012 NSEQ 4 EFFN 3.660156 CKSUM 2693919103 STATS LOCAL MSV -7.6646 0.71933 STATS LOCAL VITERBI -7.7506 0.71933 STATS LOCAL FORWARD -4.2563 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.41247 1.34559 1.34393 1.44710 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 0.00000 * 1 3.01755 3.69041 0.10652 3.60597 1 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 2 3.19300 2.66139 3.23711 0.16273 2 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 3 0.12911 3.48247 2.86794 3.39398 3 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 4 0.12911 3.48247 2.86794 3.39398 4 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 5 3.55045 0.11705 3.59478 2.91367 5 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 6 3.19300 2.66139 3.23711 0.16273 6 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 7 0.12911 3.48247 2.86794 3.39398 7 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 8 0.12911 3.48247 2.86794 3.39398 8 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 9 3.55045 0.11705 3.59478 2.91367 9 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 10 3.01755 3.69041 0.10652 3.60597 10 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 11 3.55045 0.11705 3.59478 2.91367 11 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 12 2.46500 0.94717 2.53631 0.80297 12 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 13 3.01755 3.69041 0.10652 3.60597 13 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 14 3.01755 3.69041 0.10652 3.60597 14 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 15 3.55045 0.11705 3.59478 2.91367 15 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 16 0.12911 3.48247 2.86794 3.39398 16 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 17 3.55045 0.11705 3.59478 2.91367 17 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 18 0.12911 3.48247 2.86794 3.39398 18 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 19 0.12911 3.48247 2.86794 3.39398 19 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 20 3.55045 0.11705 3.59478 2.91367 20 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 21 3.55045 0.11705 3.59478 2.91367 21 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 22 0.84829 2.57052 0.89883 2.42686 22 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 23 3.01755 3.69041 0.10652 3.60597 23 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 24 3.55045 0.11705 3.59478 2.91367 24 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 25 0.12911 3.48247 2.86794 3.39398 25 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 26 3.19300 2.66139 3.23711 0.16273 26 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 27 3.01755 3.69041 0.10652 3.60597 27 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 28 3.19300 2.66139 3.23711 0.16273 28 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 29 3.19300 2.66139 3.23711 0.16273 29 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 30 3.19300 2.66139 3.23711 0.16273 30 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 31 3.01755 3.69041 0.10652 3.60597 31 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 32 3.01755 3.69041 0.10652 3.60597 32 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 33 3.19300 2.66139 3.23711 0.16273 33 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 34 3.19300 2.66139 3.23711 0.16273 34 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 35 3.55045 0.11705 3.59478 2.91367 35 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 36 0.12911 3.48247 2.86794 3.39398 36 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 37 3.01755 3.69041 0.10652 3.60597 37 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 38 3.19300 2.66139 3.23711 0.16273 38 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 39 3.01755 3.69041 0.10652 3.60597 39 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 40 3.19300 2.66139 3.23711 0.16273 40 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 41 3.01755 3.69041 0.10652 3.60597 41 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 42 3.55045 0.11705 3.59478 2.91367 42 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 43 1.00233 1.43748 2.06192 1.31588 43 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 44 3.55045 0.11705 3.59478 2.91367 44 - - 1.38629 1.38629 1.38629 1.38629 0.03472 4.07076 4.07076 1.46634 0.26236 1.09861 0.40547 45 0.12911 3.48247 2.86794 3.39398 45 - - 1.38629 1.38629 1.38629 1.38629 0.01751 4.05355 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_nineteena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:55:44 2012 NSEQ 3 EFFN 3.000000 CKSUM 1579425985 STATS LOCAL MSV -8.0867 0.72116 STATS LOCAL VITERBI -7.9812 0.72116 STATS LOCAL FORWARD -3.7009 0.72116 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.79232 1.40617 1.18456 1.26419 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 3.30705 0.14631 3.36166 2.73626 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 0.15719 3.27118 2.73043 3.16274 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.15719 3.27118 2.73043 3.16274 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.86982 3.47591 0.13017 3.36931 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.86982 3.47591 0.13017 3.36931 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.86982 3.47591 0.13017 3.36931 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.30705 0.14631 3.36166 2.73626 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.86982 3.47591 0.13017 3.36931 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 3.30705 0.14631 3.36166 2.73626 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.43440 0.61908 2.50724 1.22957 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.97980 2.52563 3.03204 0.19727 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 3.30705 0.14631 3.36166 2.73626 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.97980 2.52563 3.03204 0.19727 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.97980 2.52563 3.03204 0.19727 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.12334 2.11792 1.37287 0.67982 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.97980 2.52563 3.03204 0.19727 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.97980 2.52563 3.03204 0.19727 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.15719 3.27118 2.73043 3.16274 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.15719 3.27118 2.73043 3.16274 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.97980 2.52563 3.03204 0.19727 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.30705 0.14631 3.36166 2.73626 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.30705 0.14631 3.36166 2.73626 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.86982 3.47591 0.13017 3.36931 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_nineteenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:55:50 2012 NSEQ 3 EFFN 3.000000 CKSUM 2871410458 STATS LOCAL MSV -8.0750 0.72053 STATS LOCAL VITERBI -7.9443 0.72053 STATS LOCAL FORWARD -3.7952 0.72053 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.54304 1.52189 1.31521 1.20546 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 3.30705 0.14631 3.36166 2.73626 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 0.15719 3.27118 2.73043 3.16274 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.15719 3.27118 2.73043 3.16274 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.86982 3.47591 0.13017 3.36931 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.86982 3.47591 0.13017 3.36931 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.86982 3.47591 0.13017 3.36931 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 0.15719 3.27118 2.73043 3.16274 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.97980 2.52563 3.03204 0.19727 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.86982 3.47591 0.13017 3.36931 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 3.30705 0.14631 3.36166 2.73626 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.97980 2.52563 3.03204 0.19727 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.15719 3.27118 2.73043 3.16274 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.97980 2.52563 3.03204 0.19727 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 3.30705 0.14631 3.36166 2.73626 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.97980 2.52563 3.03204 0.19727 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 0.15719 3.27118 2.73043 3.16274 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.97980 2.52563 3.03204 0.19727 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.97980 2.52563 3.03204 0.19727 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.97980 2.52563 3.03204 0.19727 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.97980 2.52563 3.03204 0.19727 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.15719 3.27118 2.73043 3.16274 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.15719 3.27118 2.73043 3.16274 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.97980 2.52563 3.03204 0.19727 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.30705 0.14631 3.36166 2.73626 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.30705 0.14631 3.36166 2.73626 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.86982 3.47591 0.13017 3.36931 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_onea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:42:30 2012 NSEQ 2 EFFN 2.000000 CKSUM 634275971 STATS LOCAL MSV -7.4720 0.73173 STATS LOCAL VITERBI -8.2528 0.73173 STATS LOCAL FORWARD -3.4391 0.73173 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40721 1.72349 1.41702 1.09573 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 1.89532 1.96405 1.06955 1.00436 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.92825 2.28391 0.95698 2.13014 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.15554 1.00938 2.23102 0.88601 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.81865 0.23582 2.88868 2.35662 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 1.88179 1.10717 1.04597 1.79675 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_oneb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:42:36 2012 NSEQ 2 EFFN 2.000000 CKSUM 470675090 STATS LOCAL MSV -7.4696 0.73050 STATS LOCAL VITERBI -8.4860 0.73050 STATS LOCAL FORWARD -3.6496 0.73050 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40317 1.51763 1.41931 1.22734 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.15554 1.00938 2.23102 0.88601 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.23862 2.84929 2.43386 2.70756 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.81865 0.23582 2.88868 2.35662 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 1.03732 1.95876 1.96551 1.00928 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 1.01448 1.11006 1.95471 1.79419 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_onec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:42:41 2012 NSEQ 2 EFFN 2.000000 CKSUM 3218648575 STATS LOCAL MSV -7.4834 0.72855 STATS LOCAL VITERBI -8.3698 0.72855 STATS LOCAL FORWARD -3.5469 0.72855 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.45349 1.57174 1.37327 1.18652 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.23862 2.84929 2.43386 2.70756 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_sevena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:48:25 2012 NSEQ 2 EFFN 2.000000 CKSUM 1500803962 STATS LOCAL MSV -7.4752 0.72898 STATS LOCAL VITERBI -8.3128 0.72898 STATS LOCAL FORWARD -3.5618 0.72898 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.51945 1.36263 1.43442 1.24854 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.23862 2.84929 2.43386 2.70756 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.23862 2.84929 2.43386 2.70756 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.15554 1.00938 2.23102 0.88601 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.57915 2.25909 2.64442 0.28946 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_sevenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:48:32 2012 NSEQ 2 EFFN 2.000000 CKSUM 3235530884 STATS LOCAL MSV -7.4473 0.72886 STATS LOCAL VITERBI -8.3269 0.72886 STATS LOCAL FORWARD -3.6806 0.72886 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.51904 1.26407 1.41546 1.36351 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 1.88179 1.10717 1.04597 1.79675 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_sevenc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:48:38 2012 NSEQ 2 EFFN 2.000000 CKSUM 677190326 STATS LOCAL MSV -7.4805 0.73144 STATS LOCAL VITERBI -8.3647 0.73144 STATS LOCAL FORWARD -3.3920 0.73144 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.49596 1.51275 1.43591 1.14645 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.57915 2.25909 2.64442 0.28946 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.15554 1.00938 2.23102 0.88601 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 1.01448 1.11006 1.95471 1.79419 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.81865 0.23582 2.88868 2.35662 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.92825 2.28391 0.95698 2.13014 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.23862 2.84929 2.43386 2.70756 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.81865 0.23582 2.88868 2.35662 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.92825 2.28391 0.95698 2.13014 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_seventeen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:55:31 2012 NSEQ 3 EFFN 3.000000 CKSUM 252461474 STATS LOCAL MSV -7.9979 0.72109 STATS LOCAL VITERBI -7.8792 0.72109 STATS LOCAL FORWARD -3.7137 0.72109 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.11444 1.67387 1.87820 1.10408 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 3.30705 0.14631 3.36166 2.73626 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 0.15719 3.27118 2.73043 3.16274 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 0.15719 3.27118 2.73043 3.16274 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.15719 3.27118 2.73043 3.16274 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.86982 3.47591 0.13017 3.36931 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.97980 2.52563 3.03204 0.19727 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 0.15719 3.27118 2.73043 3.16274 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 0.15719 3.27118 2.73043 3.16274 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.97980 2.52563 3.03204 0.19727 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.97980 2.52563 3.03204 0.19727 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.15719 3.27118 2.73043 3.16274 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 3.30705 0.14631 3.36166 2.73626 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.15719 3.27118 2.73043 3.16274 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.97980 2.52563 3.03204 0.19727 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.97980 2.52563 3.03204 0.19727 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 0.15719 3.27118 2.73043 3.16274 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 3.30705 0.14631 3.36166 2.73626 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 0.15719 3.27118 2.73043 3.16274 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.97980 2.52563 3.03204 0.19727 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 0.15719 3.27118 2.73043 3.16274 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.97980 2.52563 3.03204 0.19727 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.15719 3.27118 2.73043 3.16274 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.97980 2.52563 3.03204 0.19727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 3.30705 0.14631 3.36166 2.73626 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 0.15719 3.27118 2.73043 3.16274 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.86982 3.47591 0.13017 3.36931 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.97980 2.52563 3.03204 0.19727 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.30705 0.14631 3.36166 2.73626 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 0.15719 3.27118 2.73043 3.16274 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_six_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:48:16 2012 NSEQ 6 EFFN 3.565430 CKSUM 1641114563 STATS LOCAL MSV -7.2926 0.71932 STATS LOCAL VITERBI -7.7152 0.71932 STATS LOCAL FORWARD -3.9190 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.71905 1.32555 1.24979 1.31474 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 0.00000 * 1 2.44789 0.93687 2.51948 0.81833 1 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 2 0.13242 3.45492 2.85021 3.36375 2 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 3 3.51892 0.12042 3.56466 2.89106 3 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 4 3.16462 2.64340 3.20984 0.16690 4 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 5 3.16462 2.64340 3.20984 0.16690 5 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 6 3.16462 2.64340 3.20984 0.16690 6 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 7 3.51892 0.12042 3.56466 2.89106 7 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 8 2.99892 3.66295 0.10925 3.57556 8 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 9 2.99892 3.66295 0.10925 3.57556 9 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 10 2.99892 3.66295 0.10925 3.57556 10 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 11 0.13242 3.45492 2.85021 3.36375 11 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 12 3.16462 2.64340 3.20984 0.16690 12 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 13 0.13242 3.45492 2.85021 3.36375 13 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 14 2.99892 3.66295 0.10925 3.57556 14 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 15 3.51892 0.12042 3.56466 2.89106 15 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 16 3.51892 0.12042 3.56466 2.89106 16 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 17 3.16462 2.64340 3.20984 0.16690 17 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 18 3.16462 2.64340 3.20984 0.16690 18 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 19 2.99892 3.66295 0.10925 3.57556 19 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 20 3.51892 0.12042 3.56466 2.89106 20 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 21 0.13242 3.45492 2.85021 3.36375 21 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 22 0.13242 3.45492 2.85021 3.36375 22 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 23 2.99892 3.66295 0.10925 3.57556 23 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 24 2.54831 1.34093 2.61616 0.53256 24 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 25 2.99892 3.66295 0.10925 3.57556 25 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 26 3.16462 2.64340 3.20984 0.16690 26 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 27 2.99892 3.66295 0.10925 3.57556 27 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 28 3.51892 0.12042 3.56466 2.89106 28 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 29 3.51892 0.12042 3.56466 2.89106 29 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 30 3.16462 2.64340 3.20984 0.16690 30 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 31 2.99892 3.66295 0.10925 3.57556 31 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 32 3.51892 0.12042 3.56466 2.89106 32 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 33 2.99892 3.66295 0.10925 3.57556 33 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 34 3.16462 2.64340 3.20984 0.16690 34 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 35 2.54831 1.34093 2.61616 0.53256 35 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 36 2.99892 3.66295 0.10925 3.57556 36 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 37 2.99892 3.66295 0.10925 3.57556 37 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 38 3.51892 0.12042 3.56466 2.89106 38 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 39 2.99892 3.66295 0.10925 3.57556 39 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 40 3.16462 2.64340 3.20984 0.16690 40 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 41 3.51892 0.12042 3.56466 2.89106 41 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 42 3.16462 2.64340 3.20984 0.16690 42 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 43 0.13242 3.45492 2.85021 3.36375 43 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 44 3.51892 0.12042 3.56466 2.89106 44 - - 1.38629 1.38629 1.38629 1.38629 0.03531 4.05446 4.05446 1.46634 0.26236 1.09861 0.40547 45 0.13242 3.45492 2.85021 3.36375 45 - - 1.38629 1.38629 1.38629 1.38629 0.01781 4.03697 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_sixteena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:55:08 2012 NSEQ 3 EFFN 3.000000 CKSUM 3202956986 STATS LOCAL MSV -7.8599 0.72111 STATS LOCAL VITERBI -7.8497 0.72111 STATS LOCAL FORWARD -4.1451 0.72111 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.35816 1.44270 1.58441 1.19895 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.15719 3.27118 2.73043 3.16274 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.15719 3.27118 2.73043 3.16274 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 0.15719 3.27118 2.73043 3.16274 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 0.15719 3.27118 2.73043 3.16274 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.86982 3.47591 0.13017 3.36931 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.86982 3.47591 0.13017 3.36931 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.86982 3.47591 0.13017 3.36931 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 0.15719 3.27118 2.73043 3.16274 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.97980 2.52563 3.03204 0.19727 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.97980 2.52563 3.03204 0.19727 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 0.15719 3.27118 2.73043 3.16274 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.97980 2.52563 3.03204 0.19727 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 3.30705 0.14631 3.36166 2.73626 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.30705 0.14631 3.36166 2.73626 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.97980 2.52563 3.03204 0.19727 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.97980 2.52563 3.03204 0.19727 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.97980 2.52563 3.03204 0.19727 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.97980 2.52563 3.03204 0.19727 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 0.15719 3.27118 2.73043 3.16274 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.97980 2.52563 3.03204 0.19727 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 0.15719 3.27118 2.73043 3.16274 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 0.54133 2.56226 1.37841 2.42004 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.15719 3.27118 2.73043 3.16274 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.86982 3.47591 0.13017 3.36931 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.30705 0.14631 3.36166 2.73626 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_sixteenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:55:15 2012 NSEQ 4 EFFN 3.339844 CKSUM 3480860732 STATS LOCAL MSV -8.0392 0.71933 STATS LOCAL VITERBI -7.6464 0.71933 STATS LOCAL FORWARD -4.2449 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40398 1.37647 1.61533 1.19373 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 0.00000 * 1 0.14117 3.38574 2.80548 3.28793 1 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 2 3.43942 0.12946 3.48861 2.83359 2 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 3 0.14117 3.38574 2.80548 3.28793 3 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 4 0.14117 3.38574 2.80548 3.28793 4 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 5 0.14117 3.38574 2.80548 3.28793 5 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 6 2.95135 3.59331 0.11655 3.49856 6 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 7 2.95135 3.59331 0.11655 3.49856 7 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 8 2.95135 3.59331 0.11655 3.49856 8 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 9 2.95135 3.59331 0.11655 3.49856 9 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 10 0.14117 3.38574 2.80548 3.28793 10 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 11 3.09414 2.59866 3.14209 0.17779 11 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 12 3.43942 0.12946 3.48861 2.83359 12 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 13 3.09414 2.59866 3.14209 0.17779 13 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 14 3.09414 2.59866 3.14209 0.17779 14 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 15 3.09414 2.59866 3.14209 0.17779 15 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 16 3.43942 0.12946 3.48861 2.83359 16 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 17 3.43942 0.12946 3.48861 2.83359 17 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 18 3.09414 2.59866 3.14209 0.17779 18 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 19 3.43942 0.12946 3.48861 2.83359 19 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 20 3.09414 2.59866 3.14209 0.17779 20 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 21 3.09414 2.59866 3.14209 0.17779 21 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 22 3.09414 2.59866 3.14209 0.17779 22 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 23 2.95135 3.59331 0.11655 3.49856 23 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 24 3.09414 2.59866 3.14209 0.17779 24 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 25 0.14117 3.38574 2.80548 3.28793 25 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 26 3.43942 0.12946 3.48861 2.83359 26 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 27 0.14117 3.38574 2.80548 3.28793 27 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 28 3.09414 2.59866 3.14209 0.17779 28 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 29 0.14117 3.38574 2.80548 3.28793 29 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 30 3.43942 0.12946 3.48861 2.83359 30 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 31 0.14117 3.38574 2.80548 3.28793 31 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 32 3.09414 2.59866 3.14209 0.17779 32 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 33 0.14117 3.38574 2.80548 3.28793 33 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 34 3.09414 2.59866 3.14209 0.17779 34 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 35 3.43942 0.12946 3.48861 2.83359 35 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 36 0.14117 3.38574 2.80548 3.28793 36 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 37 2.95135 3.59331 0.11655 3.49856 37 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 38 3.09414 2.59866 3.14209 0.17779 38 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 39 2.95135 3.59331 0.11655 3.49856 39 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 40 3.09414 2.59866 3.14209 0.17779 40 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 41 3.43942 0.12946 3.48861 2.83359 41 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 42 2.95135 3.59331 0.11655 3.49856 42 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 43 3.43942 0.12946 3.48861 2.83359 43 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 44 3.09414 2.59866 3.14209 0.17779 44 - - 1.38629 1.38629 1.38629 1.38629 0.03677 4.01455 4.01455 1.46634 0.26236 1.09861 0.40547 45 3.43942 0.12946 3.48861 2.83359 45 - - 1.38629 1.38629 1.38629 1.38629 0.01855 3.99634 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_thirteena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:53:44 2012 NSEQ 9 EFFN 3.335449 CKSUM 139984797 STATS LOCAL MSV -8.1484 0.71932 STATS LOCAL VITERBI -7.6823 0.71932 STATS LOCAL FORWARD -3.7855 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.48084 1.04177 1.71496 1.42815 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 0.00000 * 1 0.14136 3.38434 2.80457 3.28639 1 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 2 3.43781 0.12965 3.48707 2.83242 2 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 3 0.14136 3.38434 2.80457 3.28639 3 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 4 3.43781 0.12965 3.48707 2.83242 4 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 5 0.14136 3.38434 2.80457 3.28639 5 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 6 3.43781 0.12965 3.48707 2.83242 6 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 7 3.43781 0.12965 3.48707 2.83242 7 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 8 0.14136 3.38434 2.80457 3.28639 8 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 9 3.43781 0.12965 3.48707 2.83242 9 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 10 3.43781 0.12965 3.48707 2.83242 10 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 11 3.09273 2.59776 3.14073 0.17801 11 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 12 3.43781 0.12965 3.48707 2.83242 12 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 13 3.09273 2.59776 3.14073 0.17801 13 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 14 2.95037 3.59189 0.11671 3.49699 14 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 15 3.43781 0.12965 3.48707 2.83242 15 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 16 3.09273 2.59776 3.14073 0.17801 16 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 17 3.09273 2.59776 3.14073 0.17801 17 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 18 2.95037 3.59189 0.11671 3.49699 18 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 19 3.43781 0.12965 3.48707 2.83242 19 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 20 0.14136 3.38434 2.80457 3.28639 20 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 21 3.00628 0.24684 3.06821 2.09759 21 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 22 2.95037 3.59189 0.11671 3.49699 22 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 23 3.09273 2.59776 3.14073 0.17801 23 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 24 2.95037 3.59189 0.11671 3.49699 24 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 25 2.95037 3.59189 0.11671 3.49699 25 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 26 3.09273 2.59776 3.14073 0.17801 26 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 27 0.14136 3.38434 2.80457 3.28639 27 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 28 3.43781 0.12965 3.48707 2.83242 28 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 29 3.09273 2.59776 3.14073 0.17801 29 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 30 3.43781 0.12965 3.48707 2.83242 30 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 31 3.43781 0.12965 3.48707 2.83242 31 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 32 3.43781 0.12965 3.48707 2.83242 32 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 33 0.14136 3.38434 2.80457 3.28639 33 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 34 2.82574 2.00897 2.88356 0.28679 34 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 35 3.09273 2.59776 3.14073 0.17801 35 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 36 3.09273 2.59776 3.14073 0.17801 36 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 37 3.43781 0.12965 3.48707 2.83242 37 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 38 0.14136 3.38434 2.80457 3.28639 38 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 39 2.95037 3.59189 0.11671 3.49699 39 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 40 3.09273 2.59776 3.14073 0.17801 40 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 41 2.95037 3.59189 0.11671 3.49699 41 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 42 0.14136 3.38434 2.80457 3.28639 42 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 43 0.14136 3.38434 2.80457 3.28639 43 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 44 3.43781 0.12965 3.48707 2.83242 44 - - 1.38629 1.38629 1.38629 1.38629 0.03680 4.01376 4.01376 1.46634 0.26236 1.09861 0.40547 45 3.43781 0.12965 3.48707 2.83242 45 - - 1.38629 1.38629 1.38629 1.38629 0.01857 3.99553 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_thirteenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:53:51 2012 NSEQ 20 EFFN 3.344727 CKSUM 3926777842 STATS LOCAL MSV -8.0192 0.71933 STATS LOCAL VITERBI -7.8856 0.71933 STATS LOCAL FORWARD -3.6871 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72605 0.97133 1.46172 1.55306 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 0.00000 * 1 0.14097 3.38729 2.80649 3.28963 1 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 2 3.44121 0.12925 3.49032 2.83489 2 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 3 0.14097 3.38729 2.80649 3.28963 3 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 4 3.44121 0.12925 3.49032 2.83489 4 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 5 0.14097 3.38729 2.80649 3.28963 5 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 6 3.44121 0.12925 3.49032 2.83489 6 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 7 3.44121 0.12925 3.49032 2.83489 7 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 8 2.95243 3.59489 0.11638 3.50030 8 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 9 3.44121 0.12925 3.49032 2.83489 9 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 10 3.44121 0.12925 3.49032 2.83489 10 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 11 3.09571 2.59966 3.14360 0.17754 11 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 12 3.44121 0.12925 3.49032 2.83489 12 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 13 3.09571 2.59966 3.14360 0.17754 13 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 14 2.95243 3.59489 0.11638 3.50030 14 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 15 3.44121 0.12925 3.49032 2.83489 15 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 16 3.09571 2.59966 3.14360 0.17754 16 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 17 3.44121 0.12925 3.49032 2.83489 17 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 18 2.95243 3.59489 0.11638 3.50030 18 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 19 3.44121 0.12925 3.49032 2.83489 19 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 20 0.14097 3.38729 2.80649 3.28963 20 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 21 2.88258 0.29778 2.94754 1.90330 21 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 22 2.95243 3.59489 0.11638 3.50030 22 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 23 3.44121 0.12925 3.49032 2.83489 23 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 24 2.95243 3.59489 0.11638 3.50030 24 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 25 2.95243 3.59489 0.11638 3.50030 25 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 26 3.09571 2.59966 3.14360 0.17754 26 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 27 0.14097 3.38729 2.80649 3.28963 27 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 28 3.44121 0.12925 3.49032 2.83489 28 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 29 3.09571 2.59966 3.14360 0.17754 29 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 30 3.44121 0.12925 3.49032 2.83489 30 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 31 3.44121 0.12925 3.49032 2.83489 31 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 32 3.44121 0.12925 3.49032 2.83489 32 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 33 2.95243 3.59489 0.11638 3.50030 33 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 34 3.09571 2.59966 3.14360 0.17754 34 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 35 3.09571 2.59966 3.14360 0.17754 35 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 36 3.09571 2.59966 3.14360 0.17754 36 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 37 3.44121 0.12925 3.49032 2.83489 37 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 38 0.14097 3.38729 2.80649 3.28963 38 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 39 2.95243 3.59489 0.11638 3.50030 39 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 40 3.09571 2.59966 3.14360 0.17754 40 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 41 2.95243 3.59489 0.11638 3.50030 41 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 42 0.14097 3.38729 2.80649 3.28963 42 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 43 2.95243 3.59489 0.11638 3.50030 43 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 44 3.03924 0.23563 3.10030 2.14542 44 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01543 4.01543 1.46634 0.26236 1.09861 0.40547 45 2.38711 0.31887 2.45124 2.35442 45 - - 1.38629 1.38629 1.38629 1.38629 0.01854 3.99723 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_thirteenbb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:53:55 2012 NSEQ 3 EFFN 3.000000 CKSUM 1469591864 STATS LOCAL MSV -8.0813 0.72030 STATS LOCAL VITERBI -7.7552 0.72030 STATS LOCAL FORWARD -3.4416 0.72030 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.55466 1.04845 1.61897 1.42646 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.15719 3.27118 2.73043 3.16274 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.15719 3.27118 2.73043 3.16274 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 0.15719 3.27118 2.73043 3.16274 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.15719 3.27118 2.73043 3.16274 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.97980 2.52563 3.03204 0.19727 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 3.30705 0.14631 3.36166 2.73626 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.97980 2.52563 3.03204 0.19727 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.86982 3.47591 0.13017 3.36931 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.30705 0.14631 3.36166 2.73626 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.97980 2.52563 3.03204 0.19727 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.30705 0.14631 3.36166 2.73626 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.30705 0.14631 3.36166 2.73626 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.97980 2.52563 3.03204 0.19727 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.86982 3.47591 0.13017 3.36931 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 0.15719 3.27118 2.73043 3.16274 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.97980 2.52563 3.03204 0.19727 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.97980 2.52563 3.03204 0.19727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 3.30705 0.14631 3.36166 2.73626 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 0.15719 3.27118 2.73043 3.16274 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.86982 3.47591 0.13017 3.36931 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.86982 3.47591 0.13017 3.36931 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.97980 2.52563 3.03204 0.19727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_thirteenc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:54:02 2012 NSEQ 6 EFFN 3.676758 CKSUM 138006768 STATS LOCAL MSV -7.7146 0.71932 STATS LOCAL VITERBI -7.6336 0.71932 STATS LOCAL FORWARD -4.1384 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.56284 1.02897 1.71089 1.37681 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 0.00000 * 1 0.12855 3.48721 2.87098 3.39919 1 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 2 3.55586 0.11648 3.59995 2.91754 2 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 3 0.12855 3.48721 2.87098 3.39919 3 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 4 3.55586 0.11648 3.59995 2.91754 4 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 5 0.12855 3.48721 2.87098 3.39919 5 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 6 3.55586 0.11648 3.59995 2.91754 6 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 7 3.19790 2.66450 3.24182 0.16202 7 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 8 3.02074 3.69511 0.10606 3.61119 8 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 9 3.55586 0.11648 3.59995 2.91754 9 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 10 3.55586 0.11648 3.59995 2.91754 10 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 11 3.19790 2.66450 3.24182 0.16202 11 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 12 3.55586 0.11648 3.59995 2.91754 12 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 13 3.19790 2.66450 3.24182 0.16202 13 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 14 3.02074 3.69511 0.10606 3.61119 14 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 15 3.19790 2.66450 3.24182 0.16202 15 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 16 3.19790 2.66450 3.24182 0.16202 16 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 17 3.19790 2.66450 3.24182 0.16202 17 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 18 0.94052 1.00771 2.17954 2.02929 18 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 19 3.55586 0.11648 3.59995 2.91754 19 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 20 0.12855 3.48721 2.87098 3.39919 20 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 21 0.66712 2.29396 2.24218 1.27396 21 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 22 3.02074 3.69511 0.10606 3.61119 22 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 23 3.55586 0.11648 3.59995 2.91754 23 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 24 0.12855 3.48721 2.87098 3.39919 24 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 25 3.02074 3.69511 0.10606 3.61119 25 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 26 3.19790 2.66450 3.24182 0.16202 26 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 27 3.02074 3.69511 0.10606 3.61119 27 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 28 3.55586 0.11648 3.59995 2.91754 28 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 29 0.12855 3.48721 2.87098 3.39919 29 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 30 3.55586 0.11648 3.59995 2.91754 30 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 31 3.55586 0.11648 3.59995 2.91754 31 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 32 3.55586 0.11648 3.59995 2.91754 32 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 33 0.12855 3.48721 2.87098 3.39919 33 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 34 3.19790 2.66450 3.24182 0.16202 34 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 35 3.19790 2.66450 3.24182 0.16202 35 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 36 3.19790 2.66450 3.24182 0.16202 36 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 37 3.55586 0.11648 3.59995 2.91754 37 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 38 0.12855 3.48721 2.87098 3.39919 38 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 39 3.02074 3.69511 0.10606 3.61119 39 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 40 3.55586 0.11648 3.59995 2.91754 40 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 41 3.02074 3.69511 0.10606 3.61119 41 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 42 3.55586 0.11648 3.59995 2.91754 42 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 43 3.55586 0.11648 3.59995 2.91754 43 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 44 3.19790 2.66450 3.24182 0.16202 44 - - 1.38629 1.38629 1.38629 1.38629 0.03462 4.07359 4.07359 1.46634 0.26236 1.09861 0.40547 45 2.56017 0.58808 2.63122 1.21967 45 - - 1.38629 1.38629 1.38629 1.38629 0.01746 4.05643 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_threea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:46:58 2012 NSEQ 2 EFFN 2.000000 CKSUM 1268247449 STATS LOCAL MSV -7.3625 0.72824 STATS LOCAL VITERBI -8.2348 0.72824 STATS LOCAL FORWARD -3.6133 0.72824 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.66059 1.44581 1.26603 1.22940 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.23862 2.84929 2.43386 2.70756 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.57915 2.25909 2.64442 0.28946 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.57915 2.25909 2.64442 0.28946 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_threeb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:47:05 2012 NSEQ 3 EFFN 3.000000 CKSUM 3892526639 STATS LOCAL MSV -7.9454 0.72246 STATS LOCAL VITERBI -7.9639 0.72246 STATS LOCAL FORWARD -4.0448 0.72246 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.78275 1.43417 1.30656 1.13083 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.97980 2.52563 3.03204 0.19727 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.97980 2.52563 3.03204 0.19727 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.10551 2.22611 0.68843 1.31713 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.97980 2.52563 3.03204 0.19727 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.86982 3.47591 0.13017 3.36931 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 0.15719 3.27118 2.73043 3.16274 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 3.30705 0.14631 3.36166 2.73626 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.30705 0.14631 3.36166 2.73626 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 0.15719 3.27118 2.73043 3.16274 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.09516 1.42731 0.67263 2.06647 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.97980 2.52563 3.03204 0.19727 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.97980 2.52563 3.03204 0.19727 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.42587 0.63365 2.49879 1.20810 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.42586 1.33558 2.49582 0.56887 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.97980 2.52563 3.03204 0.19727 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.97980 2.52563 3.03204 0.19727 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.30705 0.14631 3.36166 2.73626 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.97980 2.52563 3.03204 0.19727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_threec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:47:11 2012 NSEQ 3 EFFN 3.000000 CKSUM 4079785563 STATS LOCAL MSV -8.0314 0.72082 STATS LOCAL VITERBI -7.8511 0.72082 STATS LOCAL FORWARD -3.9522 0.72082 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.62542 1.59063 1.38012 1.05605 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.97980 2.52563 3.03204 0.19727 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.97980 2.52563 3.03204 0.19727 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.97980 2.52563 3.03204 0.19727 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.86982 3.47591 0.13017 3.36931 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 0.15719 3.27118 2.73043 3.16274 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 3.30705 0.14631 3.36166 2.73626 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.15719 3.27118 2.73043 3.16274 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 0.15719 3.27118 2.73043 3.16274 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.97980 2.52563 3.03204 0.19727 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.97980 2.52563 3.03204 0.19727 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.97980 2.52563 3.03204 0.19727 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.97980 2.52563 3.03204 0.19727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_threed_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:47:17 2012 NSEQ 2 EFFN 2.000000 CKSUM 3952366831 STATS LOCAL MSV -7.3931 0.72871 STATS LOCAL VITERBI -8.1902 0.72871 STATS LOCAL FORWARD -3.4651 0.72871 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.70464 1.38559 1.24625 1.27151 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.23862 2.84929 2.43386 2.70756 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.57915 2.25909 2.64442 0.28946 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.57915 2.25909 2.64442 0.28946 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.92825 2.28391 0.95698 2.13014 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_twelvea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:49:56 2012 NSEQ 6 EFFN 3.606445 CKSUM 1425331606 STATS LOCAL MSV -7.6440 0.71933 STATS LOCAL VITERBI -7.7492 0.71933 STATS LOCAL FORWARD -4.2833 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27087 1.33665 1.80281 1.23151 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 0.00000 * 1 3.17699 2.65124 3.22173 0.16506 1 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 2 3.00708 3.67496 0.10805 3.58886 2 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 3 0.13096 3.46696 2.85796 3.37696 3 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 4 0.13096 3.46696 2.85796 3.37696 4 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 5 3.53270 0.11893 3.57783 2.90095 5 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 6 3.00708 3.67496 0.10805 3.58886 6 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 7 3.17699 2.65124 3.22173 0.16506 7 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 8 0.13096 3.46696 2.85796 3.37696 8 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 9 0.13096 3.46696 2.85796 3.37696 9 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 10 3.53270 0.11893 3.57783 2.90095 10 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 11 3.53270 0.11893 3.57783 2.90095 11 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 12 0.13096 3.46696 2.85796 3.37696 12 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 13 0.13096 3.46696 2.85796 3.37696 13 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 14 3.53270 0.11893 3.57783 2.90095 14 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 15 0.13096 3.46696 2.85796 3.37696 15 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 16 3.53270 0.11893 3.57783 2.90095 16 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 17 0.13096 3.46696 2.85796 3.37696 17 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 18 3.53270 0.11893 3.57783 2.90095 18 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 19 3.17699 2.65124 3.22173 0.16506 19 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 20 2.45695 0.96987 2.52827 0.78664 20 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 21 3.17699 2.65124 3.22173 0.16506 21 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 22 3.17699 2.65124 3.22173 0.16506 22 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 23 3.17699 2.65124 3.22173 0.16506 23 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 24 3.00708 3.67496 0.10805 3.58886 24 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 25 3.17699 2.65124 3.22173 0.16506 25 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 26 0.13096 3.46696 2.85796 3.37696 26 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 27 3.53270 0.11893 3.57783 2.90095 27 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 28 3.00708 3.67496 0.10805 3.58886 28 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 29 3.17699 2.65124 3.22173 0.16506 29 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 30 3.53270 0.11893 3.57783 2.90095 30 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 31 3.53270 0.11893 3.57783 2.90095 31 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 32 0.13096 3.46696 2.85796 3.37696 32 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 33 3.17699 2.65124 3.22173 0.16506 33 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 34 3.53270 0.11893 3.57783 2.90095 34 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 35 3.17699 2.65124 3.22173 0.16506 35 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 36 3.53270 0.11893 3.57783 2.90095 36 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 37 0.13096 3.46696 2.85796 3.37696 37 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 38 3.00708 3.67496 0.10805 3.58886 38 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 39 3.17699 2.65124 3.22173 0.16506 39 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 40 3.00708 3.67496 0.10805 3.58886 40 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 41 0.13096 3.46696 2.85796 3.37696 41 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 42 0.13096 3.46696 2.85796 3.37696 42 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 43 3.17699 2.65124 3.22173 0.16506 43 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 44 2.78284 1.79931 2.84298 0.33621 44 - - 1.38629 1.38629 1.38629 1.38629 0.03505 4.06155 4.06155 1.46634 0.26236 1.09861 0.40547 45 2.78284 1.79931 2.84298 0.33621 45 - - 1.38629 1.38629 1.38629 1.38629 0.01768 4.04418 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_twelveb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:50:00 2012 NSEQ 4 EFFN 3.613281 CKSUM 327718252 STATS LOCAL MSV -7.7152 0.71933 STATS LOCAL VITERBI -7.8787 0.71933 STATS LOCAL FORWARD -4.2409 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.22953 1.30344 1.79734 1.30847 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 0.00000 * 1 3.53498 0.11869 3.58001 2.90259 1 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 2 3.17904 2.65254 3.22370 0.16476 2 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 3 3.00842 3.67695 0.10785 3.59106 3 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 4 0.13072 3.46895 2.85924 3.37914 4 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 5 0.13072 3.46895 2.85924 3.37914 5 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 6 3.53498 0.11869 3.58001 2.90259 6 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 7 3.00842 3.67695 0.10785 3.59106 7 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 8 3.17904 2.65254 3.22370 0.16476 8 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 9 0.13072 3.46895 2.85924 3.37914 9 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 10 0.13072 3.46895 2.85924 3.37914 10 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 11 3.53498 0.11869 3.58001 2.90259 11 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 12 3.53498 0.11869 3.58001 2.90259 12 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 13 0.13072 3.46895 2.85924 3.37914 13 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 14 0.13072 3.46895 2.85924 3.37914 14 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 15 3.53498 0.11869 3.58001 2.90259 15 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 16 0.13072 3.46895 2.85924 3.37914 16 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 17 3.53498 0.11869 3.58001 2.90259 17 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 18 0.13072 3.46895 2.85924 3.37914 18 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 19 3.53498 0.11869 3.58001 2.90259 19 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 20 3.17904 2.65254 3.22370 0.16476 20 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 21 0.96412 2.17979 2.19640 0.93035 21 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 22 0.96412 2.17979 2.19640 0.93035 22 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 23 3.17904 2.65254 3.22370 0.16476 23 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 24 3.00842 3.67695 0.10785 3.59106 24 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 25 3.17904 2.65254 3.22370 0.16476 25 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 26 0.13072 3.46895 2.85924 3.37914 26 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 27 3.53498 0.11869 3.58001 2.90259 27 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 28 3.00842 3.67695 0.10785 3.59106 28 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 29 3.17904 2.65254 3.22370 0.16476 29 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 30 3.53498 0.11869 3.58001 2.90259 30 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 31 3.53498 0.11869 3.58001 2.90259 31 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 32 0.13072 3.46895 2.85924 3.37914 32 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 33 3.17904 2.65254 3.22370 0.16476 33 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 34 3.53498 0.11869 3.58001 2.90259 34 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 35 3.17904 2.65254 3.22370 0.16476 35 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 36 3.53498 0.11869 3.58001 2.90259 36 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 37 0.13072 3.46895 2.85924 3.37914 37 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 38 3.00842 3.67695 0.10785 3.59106 38 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 39 3.17904 2.65254 3.22370 0.16476 39 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 40 3.00842 3.67695 0.10785 3.59106 40 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 41 0.13072 3.46895 2.85924 3.37914 41 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 42 0.13072 3.46895 2.85924 3.37914 42 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 43 3.17904 2.65254 3.22370 0.16476 43 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 44 3.17904 2.65254 3.22370 0.16476 44 - - 1.38629 1.38629 1.38629 1.38629 0.03501 4.06273 4.06273 1.46634 0.26236 1.09861 0.40547 45 3.17904 2.65254 3.22370 0.16476 45 - - 1.38629 1.38629 1.38629 1.38629 0.01766 4.04538 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_twelvec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:50:07 2012 NSEQ 12 EFFN 3.870117 CKSUM 3267954346 STATS LOCAL MSV -7.1098 0.71933 STATS LOCAL VITERBI -7.7778 0.71933 STATS LOCAL FORWARD -4.1940 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.25985 1.20243 1.78234 1.39595 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 0.00000 * 1 3.61664 0.11030 3.65797 2.96085 1 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 2 3.25346 2.69972 3.29520 0.15423 2 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 3 3.05634 3.74778 0.10105 3.66961 3 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 4 0.12243 3.54056 2.90525 3.45780 4 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 5 0.12243 3.54056 2.90525 3.45780 5 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 6 3.61664 0.11030 3.65797 2.96085 6 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 7 3.05634 3.74778 0.10105 3.66961 7 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 8 3.25346 2.69972 3.29520 0.15423 8 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 9 0.12243 3.54056 2.90525 3.45780 9 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 10 0.12243 3.54056 2.90525 3.45780 10 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 11 3.61664 0.11030 3.65797 2.96085 11 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 12 3.61664 0.11030 3.65797 2.96085 12 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 13 0.12243 3.54056 2.90525 3.45780 13 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 14 0.12243 3.54056 2.90525 3.45780 14 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 15 3.61664 0.11030 3.65797 2.96085 15 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 16 0.12243 3.54056 2.90525 3.45780 16 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 17 3.61664 0.11030 3.65797 2.96085 17 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 18 0.12243 3.54056 2.90525 3.45780 18 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 19 3.61664 0.11030 3.65797 2.96085 19 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 20 2.26557 2.24150 1.36887 0.62448 20 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 21 3.61664 0.11030 3.65797 2.96085 21 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 22 3.25346 2.69972 3.29520 0.15423 22 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 23 3.25346 2.69972 3.29520 0.15423 23 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 24 3.05634 3.74778 0.10105 3.66961 24 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 25 3.25346 2.69972 3.29520 0.15423 25 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 26 0.12243 3.54056 2.90525 3.45780 26 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 27 3.61664 0.11030 3.65797 2.96085 27 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 28 3.05634 3.74778 0.10105 3.66961 28 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 29 2.26012 2.49659 2.82398 0.28246 29 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 30 3.61664 0.11030 3.65797 2.96085 30 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 31 3.61664 0.11030 3.65797 2.96085 31 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 32 0.12243 3.54056 2.90525 3.45780 32 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 33 3.25346 2.69972 3.29520 0.15423 33 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 34 2.77036 0.40521 2.83796 1.55128 34 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 35 3.25346 2.69972 3.29520 0.15423 35 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 36 3.61664 0.11030 3.65797 2.96085 36 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 37 0.12243 3.54056 2.90525 3.45780 37 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 38 3.05634 3.74778 0.10105 3.66961 38 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 39 3.25346 2.69972 3.29520 0.15423 39 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 40 3.05634 3.74778 0.10105 3.66961 40 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 41 0.12243 3.54056 2.90525 3.45780 41 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 42 0.12243 3.54056 2.90525 3.45780 42 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 43 3.25346 2.69972 3.29520 0.15423 43 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 44 2.52094 0.74045 2.59225 1.00004 44 - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10596 4.10596 1.46634 0.26236 1.09861 0.40547 45 2.52094 0.74045 2.59225 1.00004 45 - - 1.38629 1.38629 1.38629 1.38629 0.01689 4.08935 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_twentya_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:56:02 2012 NSEQ 4 EFFN 3.566406 CKSUM 1107581771 STATS LOCAL MSV -7.4293 0.71932 STATS LOCAL VITERBI -7.8373 0.71932 STATS LOCAL FORWARD -3.8028 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.82161 1.57746 1.30423 1.02067 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 0.00000 * 1 3.51925 0.12039 3.56498 2.89129 1 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 2 2.99911 3.66324 0.10922 3.57588 2 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 3 3.51925 0.12039 3.56498 2.89129 3 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 4 0.13239 3.45521 2.85039 3.36407 4 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 5 3.51925 0.12039 3.56498 2.89129 5 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 6 2.65809 1.57623 2.72240 0.41939 6 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 7 3.16491 2.64359 3.21012 0.16685 7 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 8 2.99911 3.66324 0.10922 3.57588 8 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 9 2.99911 3.66324 0.10922 3.57588 9 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 10 3.51925 0.12039 3.56498 2.89129 10 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 11 2.99911 3.66324 0.10922 3.57588 11 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 12 3.51925 0.12039 3.56498 2.89129 12 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 13 3.16491 2.64359 3.21012 0.16685 13 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 14 0.13239 3.45521 2.85039 3.36407 14 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 15 2.99911 3.66324 0.10922 3.57588 15 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 16 3.16491 2.64359 3.21012 0.16685 16 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 17 3.16491 2.64359 3.21012 0.16685 17 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 18 3.16491 2.64359 3.21012 0.16685 18 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 19 0.13239 3.45521 2.85039 3.36407 19 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 20 3.51925 0.12039 3.56498 2.89129 20 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 21 3.16491 2.64359 3.21012 0.16685 21 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 22 0.13239 3.45521 2.85039 3.36407 22 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 23 2.99911 3.66324 0.10922 3.57588 23 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 24 3.51925 0.12039 3.56498 2.89129 24 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 25 0.13239 3.45521 2.85039 3.36407 25 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 26 3.16491 2.64359 3.21012 0.16685 26 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 27 2.99911 3.66324 0.10922 3.57588 27 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 28 3.16491 2.64359 3.21012 0.16685 28 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 29 3.16491 2.64359 3.21012 0.16685 29 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 30 3.16491 2.64359 3.21012 0.16685 30 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 31 2.99911 3.66324 0.10922 3.57588 31 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 32 3.16491 2.64359 3.21012 0.16685 32 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 33 3.16491 2.64359 3.21012 0.16685 33 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 34 3.16491 2.64359 3.21012 0.16685 34 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 35 3.51925 0.12039 3.56498 2.89129 35 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 36 0.13239 3.45521 2.85039 3.36407 36 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 37 2.99911 3.66324 0.10922 3.57588 37 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 38 3.16491 2.64359 3.21012 0.16685 38 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 39 2.99911 3.66324 0.10922 3.57588 39 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 40 3.16491 2.64359 3.21012 0.16685 40 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 41 2.99911 3.66324 0.10922 3.57588 41 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 42 3.16491 2.64359 3.21012 0.16685 42 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 43 3.16491 2.64359 3.21012 0.16685 43 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 44 2.31607 2.25114 1.58918 0.52430 44 - - 1.38629 1.38629 1.38629 1.38629 0.03530 4.05463 4.05463 1.46634 0.26236 1.09861 0.40547 45 2.99911 3.66324 0.10922 3.57588 45 - - 1.38629 1.38629 1.38629 1.38629 0.01781 4.03714 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_twentyb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:56:09 2012 NSEQ 2 EFFN 2.000000 CKSUM 708606259 STATS LOCAL MSV -7.4772 0.72918 STATS LOCAL VITERBI -8.3653 0.72918 STATS LOCAL FORWARD -3.3564 0.72918 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.62240 1.63643 1.25842 1.12764 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.23862 2.84929 2.43386 2.70756 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.57915 2.25909 2.64442 0.28946 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.23862 2.84929 2.43386 2.70756 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 1.03732 1.95876 1.96551 1.00928 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.57915 2.25909 2.64442 0.28946 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.57915 2.25909 2.64442 0.28946 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.57915 2.25909 2.64442 0.28946 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Alveolata_58S_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 22:42:51 2012 NSEQ 10 EFFN 3.500977 CKSUM 3395317246 STATS LOCAL MSV -7.5727 0.71933 STATS LOCAL VITERBI -7.6197 0.71933 STATS LOCAL FORWARD -4.0622 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.62863 1.30265 1.45636 1.20762 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 0.00000 * 1 3.49685 0.12286 3.54356 2.87517 1 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 2 2.98580 3.64368 0.11122 3.55423 2 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 3 3.49685 0.12286 3.54356 2.87517 3 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 4 3.14491 2.63090 3.19089 0.16986 4 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 5 3.14491 2.63090 3.19089 0.16986 5 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 6 3.14491 2.63090 3.19089 0.16986 6 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 7 3.49685 0.12286 3.54356 2.87517 7 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 8 2.98580 3.64368 0.11122 3.55423 8 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 9 2.98580 3.64368 0.11122 3.55423 9 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 10 2.98580 3.64368 0.11122 3.55423 10 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 11 0.13479 3.43568 2.83780 3.34265 11 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 12 3.14491 2.63090 3.19089 0.16986 12 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 13 0.13479 3.43568 2.83780 3.34265 13 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 14 3.14491 2.63090 3.19089 0.16986 14 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 15 3.49685 0.12286 3.54356 2.87517 15 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 16 3.49685 0.12286 3.54356 2.87517 16 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 17 3.49685 0.12286 3.54356 2.87517 17 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 18 3.14491 2.63090 3.19089 0.16986 18 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 19 2.98580 3.64368 0.11122 3.55423 19 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 20 0.13479 3.43568 2.83780 3.34265 20 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 21 0.13479 3.43568 2.83780 3.34265 21 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 22 0.13479 3.43568 2.83780 3.34265 22 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 23 2.98580 3.64368 0.11122 3.55423 23 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 24 3.49685 0.12286 3.54356 2.87517 24 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 25 0.13479 3.43568 2.83780 3.34265 25 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 26 3.14491 2.63090 3.19089 0.16986 26 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 27 2.98580 3.64368 0.11122 3.55423 27 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 28 3.49685 0.12286 3.54356 2.87517 28 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 29 3.49685 0.12286 3.54356 2.87517 29 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 30 3.14491 2.63090 3.19089 0.16986 30 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 31 2.62489 2.97458 0.24797 2.34233 31 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 32 3.49685 0.12286 3.54356 2.87517 32 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 33 3.14491 2.63090 3.19089 0.16986 33 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 34 3.14491 2.63090 3.19089 0.16986 34 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 35 3.49685 0.12286 3.54356 2.87517 35 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 36 0.13479 3.43568 2.83780 3.34265 36 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 37 2.98580 3.64368 0.11122 3.55423 37 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 38 3.14491 2.63090 3.19089 0.16986 38 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 39 2.98580 3.64368 0.11122 3.55423 39 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 40 3.14491 2.63090 3.19089 0.16986 40 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 41 3.49685 0.12286 3.54356 2.87517 41 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 42 3.14491 2.63090 3.19089 0.16986 42 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 43 0.13479 3.43568 2.83780 3.34265 43 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 44 1.77036 2.10336 1.59709 0.68280 44 - - 1.38629 1.38629 1.38629 1.38629 0.03571 4.04322 4.04322 1.46634 0.26236 1.09861 0.40547 45 3.14491 2.63090 3.19089 0.16986 45 - - 1.38629 1.38629 1.38629 1.38629 0.01802 4.02553 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_eighta_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:27:07 2012 NSEQ 3 EFFN 3.000000 CKSUM 3325641686 STATS LOCAL MSV -7.9406 0.72105 STATS LOCAL VITERBI -7.8084 0.72105 STATS LOCAL FORWARD -4.1819 0.72105 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.44871 1.52892 1.22347 1.36984 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.86982 3.47591 0.13017 3.36931 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.97980 2.52563 3.03204 0.19727 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.97980 2.52563 3.03204 0.19727 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 0.15719 3.27118 2.73043 3.16274 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.86982 3.47591 0.13017 3.36931 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 0.15719 3.27118 2.73043 3.16274 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.30705 0.14631 3.36166 2.73626 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 3.30705 0.14631 3.36166 2.73626 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.15719 3.27118 2.73043 3.16274 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.97980 2.52563 3.03204 0.19727 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.97980 2.52563 3.03204 0.19727 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.97980 2.52563 3.03204 0.19727 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.97980 2.52563 3.03204 0.19727 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.86982 3.47591 0.13017 3.36931 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 0.15719 3.27118 2.73043 3.16274 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.86982 3.47591 0.13017 3.36931 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.54754 2.55777 1.36722 2.41535 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 0.15719 3.27118 2.73043 3.16274 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.15719 3.27118 2.73043 3.16274 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.86982 3.47591 0.13017 3.36931 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.54754 2.55777 1.36722 2.41535 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.86982 3.47591 0.13017 3.36931 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.97980 2.52563 3.03204 0.19727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_eightb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:27:12 2012 NSEQ 2 EFFN 2.000000 CKSUM 3604720587 STATS LOCAL MSV -7.3490 0.72800 STATS LOCAL VITERBI -8.3720 0.72800 STATS LOCAL FORWARD -3.6028 0.72800 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.39767 1.46026 1.31436 1.37831 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.57915 2.25909 2.64442 0.28946 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.23862 2.84929 2.43386 2.70756 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.53331 3.02441 0.20344 2.88069 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23862 2.84929 2.43386 2.70756 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.81865 0.23582 2.88868 2.35662 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.57915 2.25909 2.64442 0.28946 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.23862 2.84929 2.43386 2.70756 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.23862 2.84929 2.43386 2.70756 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_elevena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:27:36 2012 NSEQ 32 EFFN 3.675781 CKSUM 3417897911 STATS LOCAL MSV -7.3843 0.71933 STATS LOCAL VITERBI -7.6506 0.71933 STATS LOCAL FORWARD -4.0339 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.25458 1.46041 1.35155 1.49690 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 0.00000 * 1 0.30737 2.17041 2.53008 2.64736 1 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 2 0.40424 1.86056 2.41150 2.43900 2 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 3 0.12858 3.48693 2.87081 3.39888 3 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 4 3.55554 0.11651 3.59965 2.91731 4 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 5 3.19761 2.66431 3.24155 0.16206 5 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 6 2.80026 2.50234 2.42463 0.26292 6 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 7 3.19761 2.66431 3.24155 0.16206 7 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 8 2.86129 0.33229 2.92687 1.76049 8 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 9 0.12858 3.48693 2.87081 3.39888 9 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 10 3.02055 3.69484 0.10609 3.61089 10 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 11 3.55554 0.11651 3.59965 2.91731 11 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 12 3.02055 3.69484 0.10609 3.61089 12 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 13 0.44013 2.76228 1.51098 2.62826 13 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 14 3.19761 2.66431 3.24155 0.16206 14 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 15 3.02055 3.69484 0.10609 3.61089 15 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 16 3.02055 3.69484 0.10609 3.61089 16 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 17 0.12858 3.48693 2.87081 3.39888 17 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 18 3.19761 2.66431 3.24155 0.16206 18 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 19 3.02055 3.69484 0.10609 3.61089 19 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 20 3.19761 2.66431 3.24155 0.16206 20 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 21 3.55554 0.11651 3.59965 2.91731 21 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 22 3.19761 2.66431 3.24155 0.16206 22 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 23 3.19761 2.66431 3.24155 0.16206 23 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 24 3.02055 3.69484 0.10609 3.61089 24 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 25 3.02055 3.69484 0.10609 3.61089 25 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 26 3.55554 0.11651 3.59965 2.91731 26 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 27 3.19761 2.66431 3.24155 0.16206 27 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 28 3.55554 0.11651 3.59965 2.91731 28 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 29 0.12858 3.48693 2.87081 3.39888 29 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 30 3.55554 0.11651 3.59965 2.91731 30 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 31 0.12858 3.48693 2.87081 3.39888 31 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 32 3.55554 0.11651 3.59965 2.91731 32 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 33 0.21326 3.19501 2.24953 3.08698 33 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 34 0.12858 3.48693 2.87081 3.39888 34 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 35 3.55554 0.11651 3.59965 2.91731 35 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 36 3.02055 3.69484 0.10609 3.61089 36 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 37 0.12858 3.48693 2.87081 3.39888 37 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 38 3.19761 2.66431 3.24155 0.16206 38 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 39 3.02055 3.69484 0.10609 3.61089 39 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 40 0.12858 3.48693 2.87081 3.39888 40 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 41 0.12858 3.48693 2.87081 3.39888 41 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 42 3.02055 3.69484 0.10609 3.61089 42 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 43 3.02055 3.69484 0.10609 3.61089 43 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 44 0.12858 3.48693 2.87081 3.39888 44 - - 1.38629 1.38629 1.38629 1.38629 0.03463 4.07342 4.07342 1.46634 0.26236 1.09861 0.40547 45 3.55554 0.11651 3.59965 2.91731 45 - - 1.38629 1.38629 1.38629 1.38629 0.01747 4.05626 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_elevenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:27:41 2012 NSEQ 5 EFFN 3.208008 CKSUM 4067533443 STATS LOCAL MSV -8.1074 0.71934 STATS LOCAL VITERBI -7.6996 0.71934 STATS LOCAL FORWARD -3.9608 0.71934 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27246 1.46892 1.31219 1.51207 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 0.00000 * 1 0.14694 3.34284 2.77755 3.24098 1 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 2 0.14694 3.34284 2.77755 3.24098 2 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 3 0.14694 3.34284 2.77755 3.24098 3 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 4 3.05099 2.57118 3.10057 0.18486 4 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 5 3.05099 2.57118 3.10057 0.18486 5 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 6 3.05099 2.57118 3.10057 0.18486 6 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 7 3.05099 2.57118 3.10057 0.18486 7 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 8 3.38993 0.13548 3.44120 2.79746 8 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 9 0.14694 3.34284 2.77755 3.24098 9 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 10 2.92124 3.54964 0.12142 3.45039 10 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 11 3.38993 0.13548 3.44120 2.79746 11 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 12 2.92124 3.54964 0.12142 3.45039 12 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 13 2.92124 3.54964 0.12142 3.45039 13 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 14 3.05099 2.57118 3.10057 0.18486 14 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 15 2.92124 3.54964 0.12142 3.45039 15 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 16 2.92124 3.54964 0.12142 3.45039 16 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 17 0.14694 3.34284 2.77755 3.24098 17 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 18 3.05099 2.57118 3.10057 0.18486 18 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 19 2.92124 3.54964 0.12142 3.45039 19 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 20 3.05099 2.57118 3.10057 0.18486 20 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 21 3.38993 0.13548 3.44120 2.79746 21 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 22 3.05099 2.57118 3.10057 0.18486 22 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 23 3.38993 0.13548 3.44120 2.79746 23 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 24 2.92124 3.54964 0.12142 3.45039 24 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 25 2.92124 3.54964 0.12142 3.45039 25 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 26 3.38993 0.13548 3.44120 2.79746 26 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 27 3.05099 2.57118 3.10057 0.18486 27 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 28 3.38993 0.13548 3.44120 2.79746 28 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 29 0.14694 3.34284 2.77755 3.24098 29 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 30 3.38993 0.13548 3.44120 2.79746 30 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 31 0.14694 3.34284 2.77755 3.24098 31 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 32 3.38993 0.13548 3.44120 2.79746 32 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 33 0.14694 3.34284 2.77755 3.24098 33 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 34 0.14694 3.34284 2.77755 3.24098 34 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 35 3.38993 0.13548 3.44120 2.79746 35 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 36 2.92124 3.54964 0.12142 3.45039 36 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 37 0.14694 3.34284 2.77755 3.24098 37 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 38 3.05099 2.57118 3.10057 0.18486 38 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 39 2.92124 3.54964 0.12142 3.45039 39 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 40 0.14694 3.34284 2.77755 3.24098 40 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 41 0.14694 3.34284 2.77755 3.24098 41 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 42 2.92124 3.54964 0.12142 3.45039 42 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 43 2.92124 3.54964 0.12142 3.45039 43 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 44 0.14694 3.34284 2.77755 3.24098 44 - - 1.38629 1.38629 1.38629 1.38629 0.03768 3.99047 3.99047 1.46634 0.26236 1.09861 0.40547 45 3.38993 0.13548 3.44120 2.79746 45 - - 1.38629 1.38629 1.38629 1.38629 0.01902 3.97180 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_elevenc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:27:45 2012 NSEQ 20 EFFN 3.481445 CKSUM 987744611 STATS LOCAL MSV -7.5848 0.71932 STATS LOCAL VITERBI -7.4852 0.71932 STATS LOCAL FORWARD -4.0632 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.25409 1.53980 1.40804 1.36407 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 0.00000 * 1 3.13887 2.62707 3.18509 0.17078 1 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 2 0.13553 3.42977 2.83398 3.33617 2 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 3 3.13887 2.62707 3.18509 0.17078 3 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 4 3.49007 0.12362 3.53707 2.87028 4 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 5 3.13887 2.62707 3.18509 0.17078 5 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 6 3.13887 2.62707 3.18509 0.17078 6 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 7 3.13887 2.62707 3.18509 0.17078 7 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 8 3.49007 0.12362 3.53707 2.87028 8 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 9 0.13553 3.42977 2.83398 3.33617 9 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 10 2.98175 3.63775 0.11183 3.54767 10 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 11 3.49007 0.12362 3.53707 2.87028 11 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 12 2.98175 3.63775 0.11183 3.54767 12 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 13 0.13553 3.42977 2.83398 3.33617 13 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 14 3.13887 2.62707 3.18509 0.17078 14 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 15 2.98175 3.63775 0.11183 3.54767 15 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 16 2.98175 3.63775 0.11183 3.54767 16 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 17 0.13553 3.42977 2.83398 3.33617 17 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 18 3.13887 2.62707 3.18509 0.17078 18 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 19 2.98175 3.63775 0.11183 3.54767 19 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 20 0.98772 2.55500 0.77629 2.41045 20 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 21 3.49007 0.12362 3.53707 2.87028 21 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 22 3.13887 2.62707 3.18509 0.17078 22 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 23 3.49007 0.12362 3.53707 2.87028 23 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 24 2.98175 3.63775 0.11183 3.54767 24 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 25 2.98175 3.63775 0.11183 3.54767 25 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 26 0.13553 3.42977 2.83398 3.33617 26 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 27 3.13887 2.62707 3.18509 0.17078 27 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 28 3.49007 0.12362 3.53707 2.87028 28 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 29 3.13887 2.62707 3.18509 0.17078 29 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 30 3.49007 0.12362 3.53707 2.87028 30 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 31 0.13553 3.42977 2.83398 3.33617 31 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 32 3.13887 2.62707 3.18509 0.17078 32 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 33 0.13553 3.42977 2.83398 3.33617 33 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 34 0.13553 3.42977 2.83398 3.33617 34 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 35 3.49007 0.12362 3.53707 2.87028 35 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 36 2.98175 3.63775 0.11183 3.54767 36 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 37 0.13553 3.42977 2.83398 3.33617 37 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 38 3.13887 2.62707 3.18509 0.17078 38 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 39 2.98175 3.63775 0.11183 3.54767 39 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 40 0.13553 3.42977 2.83398 3.33617 40 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 41 0.13553 3.42977 2.83398 3.33617 41 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 42 2.98175 3.63775 0.11183 3.54767 42 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 43 0.13553 3.42977 2.83398 3.33617 43 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 44 0.22376 3.13411 2.22332 3.02203 44 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03979 4.03979 1.46634 0.26236 1.09861 0.40547 45 3.06247 0.19963 2.76820 2.63920 45 - - 1.38629 1.38629 1.38629 1.38629 0.01808 4.02203 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:26:27 2012 NSEQ 2 EFFN 2.000000 CKSUM 3440808981 STATS LOCAL MSV -7.7336 0.72845 STATS LOCAL VITERBI -8.5172 0.72845 STATS LOCAL FORWARD -3.3604 0.72845 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33246 1.71713 1.20095 1.36382 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.53331 3.02441 0.20344 2.88069 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23862 2.84929 2.43386 2.70756 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.81865 0.23582 2.88868 2.35662 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.57915 2.25909 2.64442 0.28946 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.23862 2.84929 2.43386 2.70756 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.23862 2.84929 2.43386 2.70756 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23862 2.84929 2.43386 2.70756 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.15554 1.00938 2.23102 0.88601 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_foura_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:26:14 2012 NSEQ 2 EFFN 2.000000 CKSUM 3441996736 STATS LOCAL MSV -7.3600 0.72755 STATS LOCAL VITERBI -8.3191 0.72755 STATS LOCAL FORWARD -3.0189 0.72755 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.28872 1.35377 1.31697 1.61865 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23862 2.84929 2.43386 2.70756 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.81865 0.23582 2.88868 2.35662 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.23862 2.84929 2.43386 2.70756 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.23862 2.84929 2.43386 2.70756 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_fourb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:26:19 2012 NSEQ 2 EFFN 2.000000 CKSUM 909930947 STATS LOCAL MSV -7.5897 0.72766 STATS LOCAL VITERBI -8.2123 0.72766 STATS LOCAL FORWARD -3.0207 0.72766 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34189 1.34952 1.31824 1.55270 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23862 2.84929 2.43386 2.70756 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.53331 3.02441 0.20344 2.88069 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.23862 2.84929 2.43386 2.70756 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23862 2.84929 2.43386 2.70756 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_fourteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:28:14 2012 NSEQ 3 EFFN 3.000000 CKSUM 3318248282 STATS LOCAL MSV -7.9911 0.72105 STATS LOCAL VITERBI -7.7365 0.72105 STATS LOCAL FORWARD -4.0158 0.72105 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.21240 1.73126 1.43760 1.24493 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.15719 3.27118 2.73043 3.16274 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.43223 0.62271 2.50508 1.22417 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.15719 3.27118 2.73043 3.16274 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.97980 2.52563 3.03204 0.19727 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.15719 3.27118 2.73043 3.16274 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 0.15719 3.27118 2.73043 3.16274 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.97980 2.52563 3.03204 0.19727 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.15719 3.27118 2.73043 3.16274 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.97980 2.52563 3.03204 0.19727 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.30705 0.14631 3.36166 2.73626 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.97980 2.52563 3.03204 0.19727 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.97980 2.52563 3.03204 0.19727 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.86982 3.47591 0.13017 3.36931 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.97980 2.52563 3.03204 0.19727 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.97980 2.52563 3.03204 0.19727 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 0.15719 3.27118 2.73043 3.16274 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 0.15719 3.27118 2.73043 3.16274 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.15719 3.27118 2.73043 3.16274 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.86982 3.47591 0.13017 3.36931 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.86982 3.47591 0.13017 3.36931 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 0.15719 3.27118 2.73043 3.16274 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:25:26 2012 NSEQ 4 EFFN 3.691406 CKSUM 2670710095 STATS LOCAL MSV -7.7237 0.71932 STATS LOCAL VITERBI -7.6214 0.71932 STATS LOCAL FORWARD -3.8013 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.05540 2.03553 1.56163 1.16622 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 0.00000 * 1 0.96133 2.18963 2.20654 0.92741 1 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 2 3.20221 2.66723 3.24596 0.16140 2 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 3 0.12806 3.49137 2.87366 3.40376 3 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 4 3.20221 2.66723 3.24596 0.16140 4 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 5 3.02354 3.69924 0.10566 3.61577 5 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 6 3.20221 2.66723 3.24596 0.16140 6 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 7 3.20221 2.66723 3.24596 0.16140 7 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 8 3.20221 2.66723 3.24596 0.16140 8 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 9 3.20221 2.66723 3.24596 0.16140 9 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 10 3.02354 3.69924 0.10566 3.61577 10 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 11 3.56062 0.11598 3.60449 2.92094 11 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 12 0.12806 3.49137 2.87366 3.40376 12 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 13 0.12806 3.49137 2.87366 3.40376 13 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 14 0.12806 3.49137 2.87366 3.40376 14 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 15 3.02354 3.69924 0.10566 3.61577 15 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 16 0.12806 3.49137 2.87366 3.40376 16 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 17 0.12806 3.49137 2.87366 3.40376 17 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 18 3.20221 2.66723 3.24596 0.16140 18 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 19 3.02354 3.69924 0.10566 3.61577 19 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 20 3.20221 2.66723 3.24596 0.16140 20 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 21 3.56062 0.11598 3.60449 2.92094 21 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 22 3.20221 2.66723 3.24596 0.16140 22 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 23 3.20221 2.66723 3.24596 0.16140 23 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 24 0.12806 3.49137 2.87366 3.40376 24 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 25 3.02354 3.69924 0.10566 3.61577 25 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 26 3.56062 0.11598 3.60449 2.92094 26 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 27 3.20221 2.66723 3.24596 0.16140 27 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 28 3.56062 0.11598 3.60449 2.92094 28 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 29 0.12806 3.49137 2.87366 3.40376 29 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 30 0.12806 3.49137 2.87366 3.40376 30 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 31 3.20221 2.66723 3.24596 0.16140 31 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 32 0.12806 3.49137 2.87366 3.40376 32 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 33 0.84713 2.57557 0.89799 2.43206 33 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 34 0.12806 3.49137 2.87366 3.40376 34 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 35 3.20221 2.66723 3.24596 0.16140 35 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 36 3.02354 3.69924 0.10566 3.61577 36 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 37 0.12806 3.49137 2.87366 3.40376 37 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 38 3.20221 2.66723 3.24596 0.16140 38 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 39 3.02354 3.69924 0.10566 3.61577 39 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 40 0.12806 3.49137 2.87366 3.40376 40 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 41 0.12806 3.49137 2.87366 3.40376 41 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 42 3.02354 3.69924 0.10566 3.61577 42 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 43 0.12806 3.49137 2.87366 3.40376 43 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 44 0.12806 3.49137 2.87366 3.40376 44 - - 1.38629 1.38629 1.38629 1.38629 0.03454 4.07608 4.07608 1.46634 0.26236 1.09861 0.40547 45 3.20221 2.66723 3.24596 0.16140 45 - - 1.38629 1.38629 1.38629 1.38629 0.01742 4.05896 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_sixa_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:26:35 2012 NSEQ 15 EFFN 3.687744 CKSUM 797667666 STATS LOCAL MSV -7.6502 0.71933 STATS LOCAL VITERBI -7.7243 0.71933 STATS LOCAL FORWARD -4.2597 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.16124 1.50955 1.53139 1.38767 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 0.00000 * 1 0.12818 3.49033 2.87299 3.40262 1 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 2 0.12818 3.49033 2.87299 3.40262 2 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 3 0.12818 3.49033 2.87299 3.40262 3 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 4 3.20113 2.66655 3.24493 0.16155 4 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 5 3.20113 2.66655 3.24493 0.16155 5 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 6 3.55943 0.11610 3.60336 2.92009 6 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 7 3.20113 2.66655 3.24493 0.16155 7 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 8 3.55943 0.11610 3.60336 2.92009 8 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 9 0.12818 3.49033 2.87299 3.40262 9 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 10 0.12818 3.49033 2.87299 3.40262 10 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 11 3.55943 0.11610 3.60336 2.92009 11 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 12 3.02284 3.69821 0.10576 3.61463 12 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 13 0.94059 2.58194 0.80594 2.43831 13 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 14 3.20113 2.66655 3.24493 0.16155 14 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 15 3.02284 3.69821 0.10576 3.61463 15 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 16 3.02284 3.69821 0.10576 3.61463 16 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 17 0.12818 3.49033 2.87299 3.40262 17 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 18 3.20113 2.66655 3.24493 0.16155 18 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 19 0.94059 2.58194 0.80594 2.43831 19 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 20 3.20113 2.66655 3.24493 0.16155 20 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 21 3.55943 0.11610 3.60336 2.92009 21 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 22 3.20113 2.66655 3.24493 0.16155 22 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 23 3.20113 2.66655 3.24493 0.16155 23 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 24 3.02284 3.69821 0.10576 3.61463 24 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 25 3.02284 3.69821 0.10576 3.61463 25 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 26 3.20113 2.66655 3.24493 0.16155 26 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 27 3.20113 2.66655 3.24493 0.16155 27 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 28 3.55943 0.11610 3.60336 2.92009 28 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 29 3.55943 0.11610 3.60336 2.92009 29 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 30 3.55943 0.11610 3.60336 2.92009 30 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 31 0.12818 3.49033 2.87299 3.40262 31 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 32 2.51659 1.18738 2.58588 0.61820 32 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 33 0.12818 3.49033 2.87299 3.40262 33 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 34 0.12818 3.49033 2.87299 3.40262 34 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 35 3.55943 0.11610 3.60336 2.92009 35 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 36 3.02284 3.69821 0.10576 3.61463 36 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 37 0.12818 3.49033 2.87299 3.40262 37 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 38 3.20113 2.66655 3.24493 0.16155 38 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 39 3.02284 3.69821 0.10576 3.61463 39 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 40 0.12818 3.49033 2.87299 3.40262 40 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 41 0.12818 3.49033 2.87299 3.40262 41 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 42 3.02284 3.69821 0.10576 3.61463 42 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 43 0.12818 3.49033 2.87299 3.40262 43 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 44 0.12818 3.49033 2.87299 3.40262 44 - - 1.38629 1.38629 1.38629 1.38629 0.03456 4.07546 4.07546 1.46634 0.26236 1.09861 0.40547 45 3.55943 0.11610 3.60336 2.92009 45 - - 1.38629 1.38629 1.38629 1.38629 0.01743 4.05833 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_sixb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:26:43 2012 NSEQ 8 EFFN 3.558594 CKSUM 2758897519 STATS LOCAL MSV -7.6565 0.71933 STATS LOCAL VITERBI -7.6277 0.71933 STATS LOCAL FORWARD -3.9158 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.10338 1.44505 1.58840 1.47724 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 0.00000 * 1 0.13267 3.45290 2.84891 3.36153 1 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 2 0.13267 3.45290 2.84891 3.36153 2 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 3 0.13267 3.45290 2.84891 3.36153 3 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 4 3.16254 2.64208 3.20785 0.16721 4 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 5 3.51660 0.12068 3.56245 2.88939 5 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 6 3.51660 0.12068 3.56245 2.88939 6 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 7 3.16254 2.64208 3.20785 0.16721 7 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 8 3.51660 0.12068 3.56245 2.88939 8 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 9 0.13267 3.45290 2.84891 3.36153 9 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 10 0.13267 3.45290 2.84891 3.36153 10 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 11 3.51660 0.12068 3.56245 2.88939 11 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 12 2.99754 3.66093 0.10946 3.57332 12 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 13 0.13267 3.45290 2.84891 3.36153 13 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 14 3.16254 2.64208 3.20785 0.16721 14 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 15 2.99754 3.66093 0.10946 3.57332 15 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 16 2.99754 3.66093 0.10946 3.57332 16 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 17 0.13267 3.45290 2.84891 3.36153 17 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 18 3.16254 2.64208 3.20785 0.16721 18 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 19 0.39802 2.79742 1.62044 2.66543 19 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 20 3.16254 2.64208 3.20785 0.16721 20 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 21 3.51660 0.12068 3.56245 2.88939 21 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 22 3.16254 2.64208 3.20785 0.16721 22 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 23 0.13267 3.45290 2.84891 3.36153 23 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 24 2.99754 3.66093 0.10946 3.57332 24 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 25 2.99754 3.66093 0.10946 3.57332 25 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 26 3.16254 2.64208 3.20785 0.16721 26 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 27 3.16254 2.64208 3.20785 0.16721 27 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 28 3.51660 0.12068 3.56245 2.88939 28 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 29 3.51660 0.12068 3.56245 2.88939 29 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 30 2.63794 1.53936 2.70289 0.43547 30 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 31 0.13267 3.45290 2.84891 3.36153 31 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 32 3.51660 0.12068 3.56245 2.88939 32 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 33 1.49627 2.23192 2.35305 0.55576 33 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 34 0.13267 3.45290 2.84891 3.36153 34 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 35 3.51660 0.12068 3.56245 2.88939 35 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 36 2.99754 3.66093 0.10946 3.57332 36 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 37 0.13267 3.45290 2.84891 3.36153 37 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 38 3.16254 2.64208 3.20785 0.16721 38 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 39 2.99754 3.66093 0.10946 3.57332 39 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 40 0.13267 3.45290 2.84891 3.36153 40 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 41 0.13267 3.45290 2.84891 3.36153 41 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 42 2.99754 3.66093 0.10946 3.57332 42 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 43 0.13267 3.45290 2.84891 3.36153 43 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 44 0.13267 3.45290 2.84891 3.36153 44 - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 45 3.51660 0.12068 3.56245 2.88939 45 - - 1.38629 1.38629 1.38629 1.38629 0.01783 4.03576 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_sixc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:26:50 2012 NSEQ 13 EFFN 3.443604 CKSUM 4173496295 STATS LOCAL MSV -7.6779 0.71933 STATS LOCAL VITERBI -7.6270 0.71933 STATS LOCAL FORWARD -4.2468 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.09130 1.57353 1.59959 1.36677 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 0.00000 * 1 0.13699 3.41821 2.82651 3.32349 1 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 2 0.13699 3.41821 2.82651 3.32349 2 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 3 0.13699 3.41821 2.82651 3.32349 3 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 4 3.12708 2.61958 3.17375 0.17260 4 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 5 3.12708 2.61958 3.17375 0.17260 5 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 6 3.12708 2.61958 3.17375 0.17260 6 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 7 3.12708 2.61958 3.17375 0.17260 7 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 8 3.47678 0.12512 3.52437 2.86068 8 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 9 0.13699 3.41821 2.82651 3.32349 9 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 10 0.13699 3.41821 2.82651 3.32349 10 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 11 3.47678 0.12512 3.52437 2.86068 11 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 12 2.97381 3.62611 0.11305 3.53480 12 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 13 0.13699 3.41821 2.82651 3.32349 13 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 14 3.12708 2.61958 3.17375 0.17260 14 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 15 2.97381 3.62611 0.11305 3.53480 15 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 16 2.97381 3.62611 0.11305 3.53480 16 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 17 0.13699 3.41821 2.82651 3.32349 17 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 18 3.12708 2.61958 3.17375 0.17260 18 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 19 0.13699 3.41821 2.82651 3.32349 19 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 20 3.12708 2.61958 3.17375 0.17260 20 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 21 3.47678 0.12512 3.52437 2.86068 21 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 22 3.12708 2.61958 3.17375 0.17260 22 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 23 0.13699 3.41821 2.82651 3.32349 23 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 24 2.97381 3.62611 0.11305 3.53480 24 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 25 2.97381 3.62611 0.11305 3.53480 25 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 26 3.47678 0.12512 3.52437 2.86068 26 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 27 3.12708 2.61958 3.17375 0.17260 27 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 28 3.47678 0.12512 3.52437 2.86068 28 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 29 3.47678 0.12512 3.52437 2.86068 29 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 30 3.12708 2.61958 3.17375 0.17260 30 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 31 0.13699 3.41821 2.82651 3.32349 31 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 32 3.12708 2.61958 3.17375 0.17260 32 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 33 0.13699 3.41821 2.82651 3.32349 33 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 34 1.39388 0.65071 2.27615 2.05938 34 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 35 3.47678 0.12512 3.52437 2.86068 35 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 36 2.97381 3.62611 0.11305 3.53480 36 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 37 0.13699 3.41821 2.82651 3.32349 37 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 38 3.12708 2.61958 3.17375 0.17260 38 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 39 2.97381 3.62611 0.11305 3.53480 39 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 40 0.13699 3.41821 2.82651 3.32349 40 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 41 0.13699 3.41821 2.82651 3.32349 41 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 42 2.97381 3.62611 0.11305 3.53480 42 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 43 0.13699 3.41821 2.82651 3.32349 43 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 44 0.13699 3.41821 2.82651 3.32349 44 - - 1.38629 1.38629 1.38629 1.38629 0.03608 4.03311 4.03311 1.46634 0.26236 1.09861 0.40547 45 3.47678 0.12512 3.52437 2.86068 45 - - 1.38629 1.38629 1.38629 1.38629 0.01820 4.01523 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_sixd_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:26:56 2012 NSEQ 18 EFFN 3.739746 CKSUM 2077131438 STATS LOCAL MSV -7.3089 0.71933 STATS LOCAL VITERBI -7.8161 0.71933 STATS LOCAL FORWARD -4.1699 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.13317 1.60280 1.55991 1.32237 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 0.00000 * 1 0.12648 3.50496 2.88239 3.41868 1 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 2 0.12648 3.50496 2.88239 3.41868 2 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 3 0.12648 3.50496 2.88239 3.41868 3 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 4 3.21631 2.67616 3.25951 0.15939 4 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 5 3.21631 2.67616 3.25951 0.15939 5 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 6 3.21631 2.67616 3.25951 0.15939 6 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 7 3.21631 2.67616 3.25951 0.15939 7 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 8 3.57612 0.11437 3.61930 2.93201 8 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 9 0.12648 3.50496 2.88239 3.41868 9 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 10 0.12648 3.50496 2.88239 3.41868 10 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 11 3.57612 0.11437 3.61930 2.93201 11 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 12 3.03265 3.71270 0.10436 3.63069 12 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 13 0.28094 3.03315 1.94829 2.91416 13 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 14 3.21631 2.67616 3.25951 0.15939 14 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 15 3.03265 3.71270 0.10436 3.63069 15 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 16 3.03265 3.71270 0.10436 3.63069 16 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 17 0.12648 3.50496 2.88239 3.41868 17 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 18 3.21631 2.67616 3.25951 0.15939 18 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 19 0.12648 3.50496 2.88239 3.41868 19 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 20 3.21631 2.67616 3.25951 0.15939 20 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 21 3.57612 0.11437 3.61930 2.93201 21 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 22 3.21631 2.67616 3.25951 0.15939 22 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 23 2.14675 2.21275 0.89986 1.00208 23 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 24 3.03265 3.71270 0.10436 3.63069 24 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 25 3.03265 3.71270 0.10436 3.63069 25 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 26 2.92927 2.02237 2.98433 0.26965 26 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 27 3.21631 2.67616 3.25951 0.15939 27 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 28 3.57612 0.11437 3.61930 2.93201 28 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 29 3.57612 0.11437 3.61930 2.93201 29 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 30 3.57612 0.11437 3.61930 2.93201 30 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 31 0.12648 3.50496 2.88239 3.41868 31 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 32 3.21631 2.67616 3.25951 0.15939 32 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 33 0.12648 3.50496 2.88239 3.41868 33 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 34 0.94678 2.19731 2.21189 0.93798 34 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 35 3.57612 0.11437 3.61930 2.93201 35 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 36 3.03265 3.71270 0.10436 3.63069 36 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 37 0.12648 3.50496 2.88239 3.41868 37 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 38 3.21631 2.67616 3.25951 0.15939 38 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 39 3.03265 3.71270 0.10436 3.63069 39 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 40 0.12648 3.50496 2.88239 3.41868 40 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 41 0.12648 3.50496 2.88239 3.41868 41 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 42 3.03265 3.71270 0.10436 3.63069 42 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 43 0.12648 3.50496 2.88239 3.41868 43 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 44 0.12648 3.50496 2.88239 3.41868 44 - - 1.38629 1.38629 1.38629 1.38629 0.03425 4.08425 4.08425 1.46634 0.26236 1.09861 0.40547 45 3.57612 0.11437 3.61930 2.93201 45 - - 1.38629 1.38629 1.38629 1.38629 0.01727 4.06727 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_ten_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:27:21 2012 NSEQ 22 EFFN 3.236084 CKSUM 2896313313 STATS LOCAL MSV -8.1273 0.71932 STATS LOCAL VITERBI -7.6160 0.71932 STATS LOCAL FORWARD -3.9033 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.53686 1.12476 1.25556 1.74127 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 0.00000 * 1 1.49846 0.59962 2.29674 2.06420 1 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 2 0.14567 3.35213 2.78361 3.25115 2 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 3 0.14567 3.35213 2.78361 3.25115 3 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 4 3.40067 0.13415 3.45149 2.80532 4 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 5 3.06030 2.57712 3.10954 0.18331 5 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 6 3.40067 0.13415 3.45149 2.80532 6 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 7 3.40067 0.13415 3.45149 2.80532 7 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 8 3.40067 0.13415 3.45149 2.80532 8 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 9 0.14567 3.35213 2.78361 3.25115 9 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 10 2.92780 3.55913 0.12034 3.46085 10 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 11 3.40067 0.13415 3.45149 2.80532 11 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 12 2.92780 3.55913 0.12034 3.46085 12 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 13 0.14567 3.35213 2.78361 3.25115 13 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 14 3.06030 2.57712 3.10954 0.18331 14 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 15 2.92780 3.55913 0.12034 3.46085 15 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 16 2.92780 3.55913 0.12034 3.46085 16 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 17 0.14567 3.35213 2.78361 3.25115 17 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 18 3.06030 2.57712 3.10954 0.18331 18 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 19 2.92780 3.55913 0.12034 3.46085 19 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 20 3.40067 0.13415 3.45149 2.80532 20 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 21 3.40067 0.13415 3.45149 2.80532 21 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 22 3.06030 2.57712 3.10954 0.18331 22 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 23 3.40067 0.13415 3.45149 2.80532 23 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 24 2.92780 3.55913 0.12034 3.46085 24 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 25 2.92780 3.55913 0.12034 3.46085 25 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 26 3.40067 0.13415 3.45149 2.80532 26 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 27 3.06030 2.57712 3.10954 0.18331 27 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 28 3.40067 0.13415 3.45149 2.80532 28 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 29 2.92780 3.55913 0.12034 3.46085 29 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 30 3.40067 0.13415 3.45149 2.80532 30 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 31 2.92780 3.55913 0.12034 3.46085 31 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 32 3.40067 0.13415 3.45149 2.80532 32 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 33 3.40067 0.13415 3.45149 2.80532 33 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 34 3.06030 2.57712 3.10954 0.18331 34 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 35 3.40067 0.13415 3.45149 2.80532 35 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 36 2.92780 3.55913 0.12034 3.46085 36 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 37 0.14567 3.35213 2.78361 3.25115 37 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 38 3.06030 2.57712 3.10954 0.18331 38 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 39 2.92780 3.55913 0.12034 3.46085 39 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 40 0.14567 3.35213 2.78361 3.25115 40 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 41 0.14567 3.35213 2.78361 3.25115 41 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 42 2.92780 3.55913 0.12034 3.46085 42 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 43 2.92780 3.55913 0.12034 3.46085 43 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 44 0.14567 3.35213 2.78361 3.25115 44 - - 1.38629 1.38629 1.38629 1.38629 0.03749 3.99564 3.99564 1.46634 0.26236 1.09861 0.40547 45 3.40067 0.13415 3.45149 2.80532 45 - - 1.38629 1.38629 1.38629 1.38629 0.01892 3.97708 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_thirteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:28:05 2012 NSEQ 8 EFFN 3.175781 CKSUM 2342198515 STATS LOCAL MSV -8.1781 0.71931 STATS LOCAL VITERBI -7.7853 0.71931 STATS LOCAL FORWARD -4.2608 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.21574 1.40301 1.31193 1.66943 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 0.00000 * 1 0.14843 3.33206 2.77050 3.22920 1 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 2 0.14843 3.33206 2.77050 3.22920 2 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 3 0.14843 3.33206 2.77050 3.22920 3 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 4 3.37748 0.13704 3.42926 2.78832 4 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 5 3.04021 2.56430 3.09020 0.18668 5 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 6 3.37748 0.13704 3.42926 2.78832 6 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 7 3.04021 2.56430 3.09020 0.18668 7 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 8 3.37748 0.13704 3.42926 2.78832 8 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 9 0.14843 3.33206 2.77050 3.22920 9 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 10 0.14843 3.33206 2.77050 3.22920 10 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 11 3.37748 0.13704 3.42926 2.78832 11 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 12 2.91360 3.53861 0.12268 3.43825 12 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 13 0.14843 3.33206 2.77050 3.22920 13 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 14 3.04021 2.56430 3.09020 0.18668 14 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 15 2.91360 3.53861 0.12268 3.43825 15 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 16 2.91360 3.53861 0.12268 3.43825 16 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 17 0.14843 3.33206 2.77050 3.22920 17 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 18 3.04021 2.56430 3.09020 0.18668 18 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 19 2.91360 3.53861 0.12268 3.43825 19 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 20 3.37748 0.13704 3.42926 2.78832 20 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 21 3.37748 0.13704 3.42926 2.78832 21 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 22 3.04021 2.56430 3.09020 0.18668 22 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 23 3.37748 0.13704 3.42926 2.78832 23 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 24 2.91360 3.53861 0.12268 3.43825 24 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 25 2.91360 3.53861 0.12268 3.43825 25 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 26 3.37748 0.13704 3.42926 2.78832 26 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 27 3.04021 2.56430 3.09020 0.18668 27 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 28 3.37748 0.13704 3.42926 2.78832 28 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 29 2.91360 3.53861 0.12268 3.43825 29 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 30 0.14843 3.33206 2.77050 3.22920 30 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 31 2.91360 3.53861 0.12268 3.43825 31 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 32 0.14843 3.33206 2.77050 3.22920 32 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 33 0.14843 3.33206 2.77050 3.22920 33 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 34 3.04021 2.56430 3.09020 0.18668 34 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 35 3.37748 0.13704 3.42926 2.78832 35 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 36 2.91360 3.53861 0.12268 3.43825 36 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 37 0.14843 3.33206 2.77050 3.22920 37 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 38 3.04021 2.56430 3.09020 0.18668 38 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 39 2.91360 3.53861 0.12268 3.43825 39 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 40 0.14843 3.33206 2.77050 3.22920 40 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 41 0.14843 3.33206 2.77050 3.22920 41 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 42 2.91360 3.53861 0.12268 3.43825 42 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 43 2.91360 3.53861 0.12268 3.43825 43 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 44 0.14843 3.33206 2.77050 3.22920 44 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 45 3.37748 0.13704 3.42926 2.78832 45 - - 1.38629 1.38629 1.38629 1.38629 0.01914 3.96571 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:26:06 2012 NSEQ 6 EFFN 3.249023 CKSUM 954103482 STATS LOCAL MSV -8.0739 0.71932 STATS LOCAL VITERBI -7.8238 0.71932 STATS LOCAL FORWARD -4.1109 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.47195 1.61868 1.19247 1.31344 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 0.00000 * 1 3.06457 2.57984 3.11364 0.18260 1 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 2 3.06457 2.57984 3.11364 0.18260 2 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 3 2.93080 3.56347 0.11985 3.46564 3 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 4 3.40558 0.13354 3.45619 2.80891 4 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 5 3.06457 2.57984 3.11364 0.18260 5 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 6 3.06457 2.57984 3.11364 0.18260 6 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 7 3.06457 2.57984 3.11364 0.18260 7 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 8 3.40558 0.13354 3.45619 2.80891 8 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 9 0.14509 3.35639 2.78639 3.25580 9 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 10 2.93080 3.56347 0.11985 3.46564 10 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 11 3.40558 0.13354 3.45619 2.80891 11 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 12 2.93080 3.56347 0.11985 3.46564 12 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 13 0.14509 3.35639 2.78639 3.25580 13 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 14 3.06457 2.57984 3.11364 0.18260 14 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 15 2.93080 3.56347 0.11985 3.46564 15 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 16 2.93080 3.56347 0.11985 3.46564 16 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 17 0.14509 3.35639 2.78639 3.25580 17 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 18 3.06457 2.57984 3.11364 0.18260 18 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 19 2.93080 3.56347 0.11985 3.46564 19 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 20 3.06457 2.57984 3.11364 0.18260 20 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 21 3.40558 0.13354 3.45619 2.80891 21 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 22 3.06457 2.57984 3.11364 0.18260 22 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 23 3.06457 2.57984 3.11364 0.18260 23 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 24 2.93080 3.56347 0.11985 3.46564 24 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 25 2.93080 3.56347 0.11985 3.46564 25 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 26 3.40558 0.13354 3.45619 2.80891 26 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 27 3.06457 2.57984 3.11364 0.18260 27 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 28 3.40558 0.13354 3.45619 2.80891 28 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 29 2.93080 3.56347 0.11985 3.46564 29 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 30 0.14509 3.35639 2.78639 3.25580 30 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 31 0.14509 3.35639 2.78639 3.25580 31 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 32 3.40558 0.13354 3.45619 2.80891 32 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 33 0.14509 3.35639 2.78639 3.25580 33 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 34 0.14509 3.35639 2.78639 3.25580 34 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 35 3.06457 2.57984 3.11364 0.18260 35 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 36 2.93080 3.56347 0.11985 3.46564 36 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 37 0.14509 3.35639 2.78639 3.25580 37 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 38 3.06457 2.57984 3.11364 0.18260 38 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 39 2.93080 3.56347 0.11985 3.46564 39 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 40 0.14509 3.35639 2.78639 3.25580 40 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 41 0.14509 3.35639 2.78639 3.25580 41 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 42 2.93080 3.56347 0.11985 3.46564 42 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 43 2.93080 3.56347 0.11985 3.46564 43 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 44 2.93080 3.56347 0.11985 3.46564 44 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99802 3.99802 1.46634 0.26236 1.09861 0.40547 45 3.40558 0.13354 3.45619 2.80891 45 - - 1.38629 1.38629 1.38629 1.38629 0.01887 3.97950 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_twelve_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:27:55 2012 NSEQ 74 EFFN 3.410034 CKSUM 388750452 STATS LOCAL MSV -7.4871 0.71933 STATS LOCAL VITERBI -7.6504 0.71933 STATS LOCAL FORWARD -4.1874 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.28425 1.46318 1.36431 1.44356 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 0.00000 * 1 0.13831 3.40783 2.81980 3.31211 1 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 2 0.13831 3.40783 2.81980 3.31211 2 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 3 0.13831 3.40783 2.81980 3.31211 3 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 4 3.25133 0.17525 3.30615 2.46070 4 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 5 3.11652 2.61288 3.16360 0.17424 5 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 6 3.11652 2.61288 3.16360 0.17424 6 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 7 3.11652 2.61288 3.16360 0.17424 7 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 8 3.46484 0.12649 3.51294 2.85204 8 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 9 0.13831 3.40783 2.81980 3.31211 9 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 10 2.96666 3.61565 0.11415 3.52323 10 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 11 3.46484 0.12649 3.51294 2.85204 11 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 12 0.13831 3.40783 2.81980 3.31211 12 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 13 0.13831 3.40783 2.81980 3.31211 13 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 14 3.11652 2.61288 3.16360 0.17424 14 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 15 2.96666 3.61565 0.11415 3.52323 15 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 16 2.96666 3.61565 0.11415 3.52323 16 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 17 0.13831 3.40783 2.81980 3.31211 17 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 18 3.11652 2.61288 3.16360 0.17424 18 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 19 2.96666 3.61565 0.11415 3.52323 19 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 20 3.11652 2.61288 3.16360 0.17424 20 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 21 3.46484 0.12649 3.51294 2.85204 21 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 22 3.11652 2.61288 3.16360 0.17424 22 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 23 3.11652 2.61288 3.16360 0.17424 23 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 24 2.96666 3.61565 0.11415 3.52323 24 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 25 2.96666 3.61565 0.11415 3.52323 25 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 26 3.46484 0.12649 3.51294 2.85204 26 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 27 3.11652 2.61288 3.16360 0.17424 27 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 28 3.46484 0.12649 3.51294 2.85204 28 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 29 0.41203 2.75544 1.60231 2.62160 29 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 30 3.46484 0.12649 3.51294 2.85204 30 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 31 2.96666 3.61565 0.11415 3.52323 31 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 32 3.46484 0.12649 3.51294 2.85204 32 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 33 0.13831 3.40783 2.81980 3.31211 33 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 34 2.31167 2.32835 2.73359 0.30319 34 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 35 3.46484 0.12649 3.51294 2.85204 35 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 36 2.96666 3.61565 0.11415 3.52323 36 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 37 0.16646 3.30237 2.57918 3.20130 37 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 38 3.11652 2.61288 3.16360 0.17424 38 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 39 2.96666 3.61565 0.11415 3.52323 39 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 40 0.13831 3.40783 2.81980 3.31211 40 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 41 0.13831 3.40783 2.81980 3.31211 41 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 42 2.96666 3.61565 0.11415 3.52323 42 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 43 2.96666 3.61565 0.11415 3.52323 43 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 44 0.13831 3.40783 2.81980 3.31211 44 - - 1.38629 1.38629 1.38629 1.38629 0.03630 4.02714 4.02714 1.46634 0.26236 1.09861 0.40547 45 3.46484 0.12649 3.51294 2.85204 45 - - 1.38629 1.38629 1.38629 1.38629 0.01832 4.00916 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_twoa_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:25:36 2012 NSEQ 24 EFFN 3.858398 CKSUM 3088050842 STATS LOCAL MSV -7.0905 0.71932 STATS LOCAL VITERBI -7.7638 0.71932 STATS LOCAL FORWARD -3.7065 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.35209 1.39088 1.23234 1.60528 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 0.00000 * 1 3.61308 0.11065 3.65457 2.95832 1 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 2 0.12278 3.53742 2.90323 3.45435 2 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 3 0.12278 3.53742 2.90323 3.45435 3 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 4 2.85962 0.34778 2.92534 1.69931 4 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 5 3.02517 2.16151 3.07670 0.23548 5 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 6 3.25017 2.69764 3.29205 0.15468 6 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 7 3.25017 2.69764 3.29205 0.15468 7 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 8 3.61308 0.11065 3.65457 2.95832 8 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 9 0.12278 3.53742 2.90323 3.45435 9 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 10 3.05426 3.74470 0.10134 3.66619 10 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 11 3.61308 0.11065 3.65457 2.95832 11 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 12 3.05426 3.74470 0.10134 3.66619 12 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 13 0.12278 3.53742 2.90323 3.45435 13 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 14 2.56518 1.23160 2.63342 0.58082 14 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 15 3.05426 3.74470 0.10134 3.66619 15 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 16 3.05426 3.74470 0.10134 3.66619 16 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 17 0.12278 3.53742 2.90323 3.45435 17 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 18 3.25017 2.69764 3.29205 0.15468 18 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 19 3.05426 3.74470 0.10134 3.66619 19 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 20 2.87164 1.85703 2.92932 0.30948 20 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 21 3.61308 0.11065 3.65457 2.95832 21 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 22 3.25017 2.69764 3.29205 0.15468 22 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 23 3.61308 0.11065 3.65457 2.95832 23 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 24 3.05426 3.74470 0.10134 3.66619 24 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 25 3.05426 3.74470 0.10134 3.66619 25 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 26 3.38961 0.15768 3.43962 2.52474 26 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 27 3.25017 2.69764 3.29205 0.15468 27 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 28 2.98238 0.28720 3.04518 1.88795 28 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 29 2.20598 2.99459 0.26627 2.60951 29 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 30 0.63005 2.64466 1.15619 2.50444 30 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 31 0.20489 3.24864 2.26976 3.14424 31 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 32 3.61308 0.11065 3.65457 2.95832 32 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 33 0.12278 3.53742 2.90323 3.45435 33 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 34 0.12278 3.53742 2.90323 3.45435 34 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 35 3.61308 0.11065 3.65457 2.95832 35 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 36 2.69512 3.58668 0.13413 3.49662 36 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 37 0.12278 3.53742 2.90323 3.45435 37 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 38 3.25017 2.69764 3.29205 0.15468 38 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 39 3.05426 3.74470 0.10134 3.66619 39 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 40 0.12278 3.53742 2.90323 3.45435 40 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 41 0.12278 3.53742 2.90323 3.45435 41 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 42 3.05426 3.74470 0.10134 3.66619 42 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 43 3.05426 3.74470 0.10134 3.66619 43 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 44 3.05426 3.74470 0.10134 3.66619 44 - - 1.38629 1.38629 1.38629 1.38629 0.03357 4.10403 4.10403 1.46634 0.26236 1.09861 0.40547 45 3.61308 0.11065 3.65457 2.95832 45 - - 1.38629 1.38629 1.38629 1.38629 0.01693 4.08739 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_twob_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:25:43 2012 NSEQ 8 EFFN 3.222656 CKSUM 2547926137 STATS LOCAL MSV -7.7534 0.71932 STATS LOCAL VITERBI -7.7335 0.71932 STATS LOCAL FORWARD -4.0829 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40323 1.39104 1.31591 1.43906 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 0.00000 * 1 3.39555 0.13478 3.44658 2.80157 1 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 2 0.14627 3.34770 2.78072 3.24630 2 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 3 0.14627 3.34770 2.78072 3.24630 3 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 4 3.05586 2.57429 3.10526 0.18405 4 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 5 3.05586 2.57429 3.10526 0.18405 5 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 6 3.05586 2.57429 3.10526 0.18405 6 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 7 3.05586 2.57429 3.10526 0.18405 7 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 8 3.39555 0.13478 3.44658 2.80157 8 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 9 0.14627 3.34770 2.78072 3.24630 9 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 10 2.92468 3.55461 0.12085 3.45586 10 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 11 3.39555 0.13478 3.44658 2.80157 11 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 12 2.92468 3.55461 0.12085 3.45586 12 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 13 0.14627 3.34770 2.78072 3.24630 13 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 14 3.39555 0.13478 3.44658 2.80157 14 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 15 2.92468 3.55461 0.12085 3.45586 15 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 16 2.92468 3.55461 0.12085 3.45586 16 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 17 0.14627 3.34770 2.78072 3.24630 17 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 18 3.05586 2.57429 3.10526 0.18405 18 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 19 0.14627 3.34770 2.78072 3.24630 19 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 20 3.05586 2.57429 3.10526 0.18405 20 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 21 3.39555 0.13478 3.44658 2.80157 21 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 22 3.05586 2.57429 3.10526 0.18405 22 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 23 3.05586 2.57429 3.10526 0.18405 23 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 24 2.92468 3.55461 0.12085 3.45586 24 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 25 2.92468 3.55461 0.12085 3.45586 25 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 26 3.39555 0.13478 3.44658 2.80157 26 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 27 3.05586 2.57429 3.10526 0.18405 27 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 28 3.39555 0.13478 3.44658 2.80157 28 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 29 2.92468 3.55461 0.12085 3.45586 29 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 30 0.14627 3.34770 2.78072 3.24630 30 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 31 2.92468 3.55461 0.12085 3.45586 31 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 32 3.39555 0.13478 3.44658 2.80157 32 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 33 0.14627 3.34770 2.78072 3.24630 33 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 34 3.39555 0.13478 3.44658 2.80157 34 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 35 3.39555 0.13478 3.44658 2.80157 35 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 36 3.05586 2.57429 3.10526 0.18405 36 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 37 0.14627 3.34770 2.78072 3.24630 37 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 38 3.05586 2.57429 3.10526 0.18405 38 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 39 2.92468 3.55461 0.12085 3.45586 39 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 40 0.14627 3.34770 2.78072 3.24630 40 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 41 0.14627 3.34770 2.78072 3.24630 41 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 42 2.92468 3.55461 0.12085 3.45586 42 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 43 2.92468 3.55461 0.12085 3.45586 43 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 44 2.92468 3.55461 0.12085 3.45586 44 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99317 3.99317 1.46634 0.26236 1.09861 0.40547 45 3.39555 0.13478 3.44658 2.80157 45 - - 1.38629 1.38629 1.38629 1.38629 0.01897 3.97456 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_twoc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:25:48 2012 NSEQ 25 EFFN 3.573608 CKSUM 3334689644 STATS LOCAL MSV -7.4338 0.71933 STATS LOCAL VITERBI -7.6275 0.71933 STATS LOCAL FORWARD -3.9955 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.54120 1.41879 1.21665 1.39575 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 0.00000 * 1 3.52168 0.12012 3.56730 2.89304 1 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 2 0.13213 3.45734 2.85176 3.36640 2 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 3 0.13213 3.45734 2.85176 3.36640 3 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 4 3.52168 0.12012 3.56730 2.89304 4 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 5 3.16710 2.64497 3.21222 0.16653 5 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 6 3.16710 2.64497 3.21222 0.16653 6 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 7 3.16710 2.64497 3.21222 0.16653 7 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 8 3.52168 0.12012 3.56730 2.89304 8 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 9 0.13213 3.45734 2.85176 3.36640 9 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 10 3.00056 3.66536 0.10901 3.57823 10 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 11 2.46586 0.76758 2.53784 0.98915 11 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 12 3.00056 3.66536 0.10901 3.57823 12 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 13 0.13213 3.45734 2.85176 3.36640 13 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 14 3.16710 2.64497 3.21222 0.16653 14 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 15 3.00056 3.66536 0.10901 3.57823 15 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 16 3.00056 3.66536 0.10901 3.57823 16 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 17 0.13213 3.45734 2.85176 3.36640 17 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 18 3.16710 2.64497 3.21222 0.16653 18 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 19 0.21940 3.16112 2.23213 3.05081 19 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 20 3.16710 2.64497 3.21222 0.16653 20 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 21 3.52168 0.12012 3.56730 2.89304 21 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 22 3.16710 2.64497 3.21222 0.16653 22 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 23 3.16710 2.64497 3.21222 0.16653 23 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 24 3.00056 3.66536 0.10901 3.57823 24 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 25 3.00056 3.66536 0.10901 3.57823 25 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 26 3.52168 0.12012 3.56730 2.89304 26 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 27 3.16710 2.64497 3.21222 0.16653 27 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 28 3.52168 0.12012 3.56730 2.89304 28 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 29 2.32922 3.31349 0.19164 3.20305 29 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 30 2.32922 3.31349 0.19164 3.20305 30 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 31 3.00056 3.66536 0.10901 3.57823 31 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 32 3.52168 0.12012 3.56730 2.89304 32 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 33 0.13213 3.45734 2.85176 3.36640 33 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 34 3.52168 0.12012 3.56730 2.89304 34 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 35 3.52168 0.12012 3.56730 2.89304 35 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 36 3.16710 2.64497 3.21222 0.16653 36 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 37 2.31883 2.50191 0.47001 1.63638 37 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 38 3.16710 2.64497 3.21222 0.16653 38 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 39 3.00056 3.66536 0.10901 3.57823 39 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 40 0.13213 3.45734 2.85176 3.36640 40 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 41 0.13213 3.45734 2.85176 3.36640 41 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 42 3.00056 3.66536 0.10901 3.57823 42 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 43 3.00056 3.66536 0.10901 3.57823 43 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 44 3.00056 3.66536 0.10901 3.57823 44 - - 1.38629 1.38629 1.38629 1.38629 0.03525 4.05588 4.05588 1.46634 0.26236 1.09861 0.40547 45 3.52168 0.12012 3.56730 2.89304 45 - - 1.38629 1.38629 1.38629 1.38629 0.01778 4.03841 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Alveolata_58S_start_twod_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Feb 29 13:25:53 2012 NSEQ 12 EFFN 3.430664 CKSUM 3640048188 STATS LOCAL MSV -7.2425 0.71931 STATS LOCAL VITERBI -7.5607 0.71931 STATS LOCAL FORWARD -3.7783 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.41933 1.31164 1.25837 1.58655 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 0.00000 * 1 3.47220 0.12564 3.51998 2.85737 1 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 2 0.13749 3.41422 2.82393 3.31912 2 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 3 0.13749 3.41422 2.82393 3.31912 3 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 4 3.47220 0.12564 3.51998 2.85737 4 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 5 3.12302 2.61701 3.16985 0.17323 5 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 6 3.12302 2.61701 3.16985 0.17323 6 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 7 3.12302 2.61701 3.16985 0.17323 7 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 8 3.47220 0.12564 3.51998 2.85737 8 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 9 0.13749 3.41422 2.82393 3.31912 9 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 10 2.97107 3.62210 0.11347 3.53036 10 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 11 3.47220 0.12564 3.51998 2.85737 11 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 12 2.97107 3.62210 0.11347 3.53036 12 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 13 0.13749 3.41422 2.82393 3.31912 13 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 14 3.47220 0.12564 3.51998 2.85737 14 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 15 2.97107 3.62210 0.11347 3.53036 15 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 16 2.97107 3.62210 0.11347 3.53036 16 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 17 0.13749 3.41422 2.82393 3.31912 17 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 18 3.12302 2.61701 3.16985 0.17323 18 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 19 0.13749 3.41422 2.82393 3.31912 19 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 20 3.12302 2.61701 3.16985 0.17323 20 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 21 3.47220 0.12564 3.51998 2.85737 21 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 22 3.12302 2.61701 3.16985 0.17323 22 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 23 2.60677 1.53439 2.67234 0.44387 23 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 24 2.97107 3.62210 0.11347 3.53036 24 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 25 2.97107 3.62210 0.11347 3.53036 25 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 26 3.47220 0.12564 3.51998 2.85737 26 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 27 3.12302 2.61701 3.16985 0.17323 27 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 28 3.47220 0.12564 3.51998 2.85737 28 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 29 1.96943 3.04589 0.27579 2.91993 29 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 30 2.97107 3.62210 0.11347 3.53036 30 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 31 2.97107 3.62210 0.11347 3.53036 31 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 32 3.47220 0.12564 3.51998 2.85737 32 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 33 0.13749 3.41422 2.82393 3.31912 33 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 34 3.47220 0.12564 3.51998 2.85737 34 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 35 3.47220 0.12564 3.51998 2.85737 35 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 36 0.55266 2.36283 2.26915 1.48267 36 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 37 0.13749 3.41422 2.82393 3.31912 37 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 38 3.12302 2.61701 3.16985 0.17323 38 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 39 2.97107 3.62210 0.11347 3.53036 39 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 40 0.13749 3.41422 2.82393 3.31912 40 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 41 0.13749 3.41422 2.82393 3.31912 41 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 42 2.97107 3.62210 0.11347 3.53036 42 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 43 2.97107 3.62210 0.11347 3.53036 43 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 44 2.97107 3.62210 0.11347 3.53036 44 - - 1.38629 1.38629 1.38629 1.38629 0.03617 4.03081 4.03081 1.46634 0.26236 1.09861 0.40547 45 3.47220 0.12564 3.51998 2.85737 45 - - 1.38629 1.38629 1.38629 1.38629 0.01825 4.01289 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_elevena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:41:31 2012 NSEQ 12 EFFN 3.272461 CKSUM 1146151681 STATS LOCAL MSV -8.0339 0.71932 STATS LOCAL VITERBI -7.7952 0.71932 STATS LOCAL FORWARD -4.0279 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.47342 1.38843 1.32140 1.36794 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 0.00000 * 1 3.07227 2.58474 3.12105 0.18133 1 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 2 3.07227 2.58474 3.12105 0.18133 2 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 3 3.07227 2.58474 3.12105 0.18133 3 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 4 2.93618 3.57128 0.11898 3.47424 4 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 5 3.41441 0.13246 3.46466 2.81537 5 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 6 3.07227 2.58474 3.12105 0.18133 6 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 7 3.41441 0.13246 3.46466 2.81537 7 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 8 3.41441 0.13246 3.46466 2.81537 8 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 9 3.07227 2.58474 3.12105 0.18133 9 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 10 2.93618 3.57128 0.11898 3.47424 10 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 11 0.14405 3.36405 2.79138 3.26418 11 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 12 2.93618 3.57128 0.11898 3.47424 12 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 13 0.14405 3.36405 2.79138 3.26418 13 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 14 3.07227 2.58474 3.12105 0.18133 14 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 15 3.41441 0.13246 3.46466 2.81537 15 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 16 2.93618 3.57128 0.11898 3.47424 16 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 17 2.37276 3.26979 0.19096 3.15593 17 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 18 2.93618 3.57128 0.11898 3.47424 18 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 19 3.07227 2.58474 3.12105 0.18133 19 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 20 2.93618 3.57128 0.11898 3.47424 20 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 21 0.14405 3.36405 2.79138 3.26418 21 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 22 2.93618 3.57128 0.11898 3.47424 22 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 23 2.93618 3.57128 0.11898 3.47424 23 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 24 3.41441 0.13246 3.46466 2.81537 24 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 25 3.41441 0.13246 3.46466 2.81537 25 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 26 0.14405 3.36405 2.79138 3.26418 26 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 27 3.07227 2.58474 3.12105 0.18133 27 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 28 3.41441 0.13246 3.46466 2.81537 28 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 29 3.41441 0.13246 3.46466 2.81537 29 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 30 2.93618 3.57128 0.11898 3.47424 30 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 31 3.41441 0.13246 3.46466 2.81537 31 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 32 3.41441 0.13246 3.46466 2.81537 32 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 33 2.93618 3.57128 0.11898 3.47424 33 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 34 0.14405 3.36405 2.79138 3.26418 34 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 35 0.14405 3.36405 2.79138 3.26418 35 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 36 3.07227 2.58474 3.12105 0.18133 36 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 37 3.07227 2.58474 3.12105 0.18133 37 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 38 3.07227 2.58474 3.12105 0.18133 38 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 39 0.14405 3.36405 2.79138 3.26418 39 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 40 0.14405 3.36405 2.79138 3.26418 40 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 41 2.93618 3.57128 0.11898 3.47424 41 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 42 3.41441 0.13246 3.46466 2.81537 42 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 43 0.14405 3.36405 2.79138 3.26418 43 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 44 3.07227 2.58474 3.12105 0.18133 44 - - 1.38629 1.38629 1.38629 1.38629 0.03723 4.00231 4.00231 1.46634 0.26236 1.09861 0.40547 45 0.14405 3.36405 2.79138 3.26418 45 - - 1.38629 1.38629 1.38629 1.38629 0.01879 3.98387 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_elevenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:41:38 2012 NSEQ 7 EFFN 3.749512 CKSUM 2366441104 STATS LOCAL MSV -7.0652 0.71931 STATS LOCAL VITERBI -7.5685 0.71931 STATS LOCAL FORWARD -4.4492 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.38524 1.47412 1.40056 1.29354 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 0.00000 * 1 1.79493 1.75931 2.34666 0.56914 1 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 2 2.88109 1.92354 2.93805 0.29455 2 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 3 2.49444 0.76834 2.56603 0.97594 3 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 4 2.27102 2.42071 0.55082 1.46337 4 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 5 3.57922 0.11406 3.62226 2.93422 5 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 6 3.21913 2.67796 3.26222 0.15899 6 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 7 3.57922 0.11406 3.62226 2.93422 7 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 8 3.57922 0.11406 3.62226 2.93422 8 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 9 3.21913 2.67796 3.26222 0.15899 9 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 10 3.03446 3.71539 0.10410 3.63368 10 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 11 0.12616 3.50768 2.88414 3.42167 11 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 12 0.12616 3.50768 2.88414 3.42167 12 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 13 0.12616 3.50768 2.88414 3.42167 13 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 14 3.21913 2.67796 3.26222 0.15899 14 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 15 3.57922 0.11406 3.62226 2.93422 15 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 16 3.03446 3.71539 0.10410 3.63368 16 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 17 3.03446 3.71539 0.10410 3.63368 17 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 18 3.03446 3.71539 0.10410 3.63368 18 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 19 3.21913 2.67796 3.26222 0.15899 19 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 20 3.03446 3.71539 0.10410 3.63368 20 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 21 0.12616 3.50768 2.88414 3.42167 21 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 22 3.03446 3.71539 0.10410 3.63368 22 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 23 3.03446 3.71539 0.10410 3.63368 23 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 24 3.57922 0.11406 3.62226 2.93422 24 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 25 3.21913 2.67796 3.26222 0.15899 25 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 26 0.12616 3.50768 2.88414 3.42167 26 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 27 3.21913 2.67796 3.26222 0.15899 27 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 28 3.57922 0.11406 3.62226 2.93422 28 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 29 3.57922 0.11406 3.62226 2.93422 29 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 30 3.03446 3.71539 0.10410 3.63368 30 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 31 3.57922 0.11406 3.62226 2.93422 31 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 32 3.21913 2.67796 3.26222 0.15899 32 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 33 3.03446 3.71539 0.10410 3.63368 33 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 34 0.12616 3.50768 2.88414 3.42167 34 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 35 0.12616 3.50768 2.88414 3.42167 35 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 36 3.21913 2.67796 3.26222 0.15899 36 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 37 3.21913 2.67796 3.26222 0.15899 37 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 38 3.21913 2.67796 3.26222 0.15899 38 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 39 0.12616 3.50768 2.88414 3.42167 39 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 40 0.12616 3.50768 2.88414 3.42167 40 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 41 3.03446 3.71539 0.10410 3.63368 41 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 42 3.57922 0.11406 3.62226 2.93422 42 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 43 0.12616 3.50768 2.88414 3.42167 43 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 44 3.21913 2.67796 3.26222 0.15899 44 - - 1.38629 1.38629 1.38629 1.38629 0.03419 4.08589 4.08589 1.46634 0.26236 1.09861 0.40547 45 0.12616 3.50768 2.88414 3.42167 45 - - 1.38629 1.38629 1.38629 1.38629 0.01724 4.06894 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_elevenc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:41:44 2012 NSEQ 2 EFFN 2.000000 CKSUM 4069155507 STATS LOCAL MSV -7.5533 0.72843 STATS LOCAL VITERBI -8.3163 0.72843 STATS LOCAL FORWARD -3.8936 0.72843 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.45663 1.50989 1.37466 1.22718 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.57915 2.25909 2.64442 0.28946 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.57915 2.25909 2.64442 0.28946 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_elevend_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:41:50 2012 NSEQ 6 EFFN 3.483398 CKSUM 493634052 STATS LOCAL MSV -7.4999 0.71933 STATS LOCAL VITERBI -7.8190 0.71933 STATS LOCAL FORWARD -4.2484 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.28412 1.78988 1.37130 1.19617 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 0.00000 * 1 3.13947 2.62745 3.18567 0.17069 1 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 2 3.13947 2.62745 3.18567 0.17069 2 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 3 0.38809 2.59438 2.41106 1.84999 3 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 4 3.13947 2.62745 3.18567 0.17069 4 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 5 2.98216 3.63834 0.11177 3.54832 5 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 6 2.98216 3.63834 0.11177 3.54832 6 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 7 3.49075 0.12354 3.53772 2.87077 7 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 8 3.49075 0.12354 3.53772 2.87077 8 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 9 3.13947 2.62745 3.18567 0.17069 9 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 10 2.98216 3.63834 0.11177 3.54832 10 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 11 0.13545 3.43036 2.83437 3.33682 11 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 12 0.13545 3.43036 2.83437 3.33682 12 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 13 0.13545 3.43036 2.83437 3.33682 13 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 14 3.13947 2.62745 3.18567 0.17069 14 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 15 3.13947 2.62745 3.18567 0.17069 15 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 16 2.98216 3.63834 0.11177 3.54832 16 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 17 2.98216 3.63834 0.11177 3.54832 17 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 18 0.13545 3.43036 2.83437 3.33682 18 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 19 3.13947 2.62745 3.18567 0.17069 19 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 20 2.98216 3.63834 0.11177 3.54832 20 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 21 3.13947 2.62745 3.18567 0.17069 21 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 22 2.98216 3.63834 0.11177 3.54832 22 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 23 0.13545 3.43036 2.83437 3.33682 23 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 24 2.76674 1.82415 2.82709 0.33325 24 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 25 2.98216 3.63834 0.11177 3.54832 25 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 26 0.13545 3.43036 2.83437 3.33682 26 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 27 3.13947 2.62745 3.18567 0.17069 27 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 28 3.49075 0.12354 3.53772 2.87077 28 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 29 3.49075 0.12354 3.53772 2.87077 29 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 30 2.98216 3.63834 0.11177 3.54832 30 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 31 3.49075 0.12354 3.53772 2.87077 31 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 32 3.13947 2.62745 3.18567 0.17069 32 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 33 2.98216 3.63834 0.11177 3.54832 33 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 34 0.13545 3.43036 2.83437 3.33682 34 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 35 0.13545 3.43036 2.83437 3.33682 35 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 36 3.13947 2.62745 3.18567 0.17069 36 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 37 3.13947 2.62745 3.18567 0.17069 37 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 38 3.13947 2.62745 3.18567 0.17069 38 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 39 0.13545 3.43036 2.83437 3.33682 39 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 40 0.13545 3.43036 2.83437 3.33682 40 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 41 2.98216 3.63834 0.11177 3.54832 41 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 42 3.49075 0.12354 3.53772 2.87077 42 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 43 0.13545 3.43036 2.83437 3.33682 43 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 44 3.13947 2.62745 3.18567 0.17069 44 - - 1.38629 1.38629 1.38629 1.38629 0.03582 4.04013 4.04013 1.46634 0.26236 1.09861 0.40547 45 0.13545 3.43036 2.83437 3.33682 45 - - 1.38629 1.38629 1.38629 1.38629 0.01807 4.02238 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:40:33 2012 NSEQ 4 EFFN 3.371094 CKSUM 2728876017 STATS LOCAL MSV -7.6702 0.71933 STATS LOCAL VITERBI -7.7190 0.71933 STATS LOCAL FORWARD -3.9488 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.14299 1.32265 1.60290 1.54461 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 0.00000 * 1 3.10416 2.60503 3.15172 0.17619 1 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 2 3.10416 2.60503 3.15172 0.17619 2 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 3 3.10416 2.60503 3.15172 0.17619 3 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 4 2.95822 3.60333 0.11547 3.50963 4 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 5 3.45082 0.12812 3.49952 2.84187 5 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 6 0.13988 3.39564 2.81190 3.29876 6 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 7 3.45082 0.12812 3.49952 2.84187 7 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 8 3.45082 0.12812 3.49952 2.84187 8 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 9 3.10416 2.60503 3.15172 0.17619 9 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 10 2.95822 3.60333 0.11547 3.50963 10 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 11 0.13988 3.39564 2.81190 3.29876 11 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 12 0.13988 3.39564 2.81190 3.29876 12 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 13 3.45082 0.12812 3.49952 2.84187 13 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 14 0.97314 2.14888 2.16446 0.93987 14 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 15 3.45082 0.12812 3.49952 2.84187 15 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 16 0.13988 3.39564 2.81190 3.29876 16 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 17 0.13988 3.39564 2.81190 3.29876 17 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 18 2.95822 3.60333 0.11547 3.50963 18 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 19 3.45082 0.12812 3.49952 2.84187 19 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 20 0.13988 3.39564 2.81190 3.29876 20 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 21 0.13988 3.39564 2.81190 3.29876 21 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 22 2.95822 3.60333 0.11547 3.50963 22 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 23 0.13988 3.39564 2.81190 3.29876 23 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 24 3.10416 2.60503 3.15172 0.17619 24 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 25 2.95822 3.60333 0.11547 3.50963 25 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 26 0.13988 3.39564 2.81190 3.29876 26 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 27 3.45082 0.12812 3.49952 2.84187 27 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 28 3.45082 0.12812 3.49952 2.84187 28 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 29 3.45082 0.12812 3.49952 2.84187 29 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 30 2.95822 3.60333 0.11547 3.50963 30 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 31 3.45082 0.12812 3.49952 2.84187 31 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 32 3.10416 2.60503 3.15172 0.17619 32 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 33 2.95822 3.60333 0.11547 3.50963 33 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 34 0.13988 3.39564 2.81190 3.29876 34 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 35 0.13988 3.39564 2.81190 3.29876 35 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 36 3.45082 0.12812 3.49952 2.84187 36 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 37 3.10416 2.60503 3.15172 0.17619 37 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 38 3.10416 2.60503 3.15172 0.17619 38 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 39 0.13988 3.39564 2.81190 3.29876 39 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 40 0.13988 3.39564 2.81190 3.29876 40 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 41 2.95822 3.60333 0.11547 3.50963 41 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 42 3.45082 0.12812 3.49952 2.84187 42 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 43 0.13988 3.39564 2.81190 3.29876 43 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 44 3.10416 2.60503 3.15172 0.17619 44 - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 45 0.13988 3.39564 2.81190 3.29876 45 - - 1.38629 1.38629 1.38629 1.38629 0.01845 4.00206 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:40:26 2012 NSEQ 2 EFFN 2.000000 CKSUM 998262845 STATS LOCAL MSV -7.6891 0.73003 STATS LOCAL VITERBI -8.4068 0.73003 STATS LOCAL FORWARD -3.2433 0.73003 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.11611 1.39855 1.45506 1.64970 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.15554 1.00938 2.23102 0.88601 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.23862 2.84929 2.43386 2.70756 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.15554 1.00938 2.23102 0.88601 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.15554 1.00938 2.23102 0.88601 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.81865 0.23582 2.88868 2.35662 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.92825 2.28391 0.95698 2.13014 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.23862 2.84929 2.43386 2.70756 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_fourteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:42:14 2012 NSEQ 2 EFFN 2.000000 CKSUM 551182428 STATS LOCAL MSV -7.6363 0.72784 STATS LOCAL VITERBI -8.3274 0.72784 STATS LOCAL FORWARD -3.4964 0.72784 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.19067 1.40884 1.42869 1.55148 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.81865 0.23582 2.88868 2.35662 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.23862 2.84929 2.43386 2.70756 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_ninea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:41:00 2012 NSEQ 7 EFFN 3.790527 CKSUM 4206231787 STATS LOCAL MSV -7.2724 0.71933 STATS LOCAL VITERBI -7.6144 0.71933 STATS LOCAL FORWARD -4.2349 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.36808 1.51781 1.52107 1.17852 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 0.00000 * 1 0.89002 1.69049 2.09997 1.26421 1 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 2 2.66645 0.48139 2.73592 1.39537 2 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 3 2.88838 1.91919 2.94521 0.29435 3 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 4 2.65817 1.47680 2.72315 0.45273 4 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 5 3.23093 2.68543 3.27356 0.15734 5 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 6 3.23093 2.68543 3.27356 0.15734 6 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 7 3.59213 0.11274 3.63458 2.94342 7 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 8 3.59213 0.11274 3.63458 2.94342 8 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 9 3.23093 2.68543 3.27356 0.15734 9 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 10 3.04202 3.72657 0.10304 3.64608 10 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 11 0.12486 3.51901 2.89141 3.43411 11 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 12 3.04202 3.72657 0.10304 3.64608 12 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 13 0.12486 3.51901 2.89141 3.43411 13 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 14 3.23093 2.68543 3.27356 0.15734 14 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 15 3.04202 3.72657 0.10304 3.64608 15 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 16 3.23093 2.68543 3.27356 0.15734 16 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 17 0.12486 3.51901 2.89141 3.43411 17 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 18 3.59213 0.11274 3.63458 2.94342 18 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 19 3.04202 3.72657 0.10304 3.64608 19 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 20 0.12486 3.51901 2.89141 3.43411 20 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 21 3.04202 3.72657 0.10304 3.64608 21 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 22 3.04202 3.72657 0.10304 3.64608 22 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 23 3.59213 0.11274 3.63458 2.94342 23 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 24 3.23093 2.68543 3.27356 0.15734 24 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 25 0.12486 3.51901 2.89141 3.43411 25 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 26 3.23093 2.68543 3.27356 0.15734 26 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 27 3.59213 0.11274 3.63458 2.94342 27 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 28 3.59213 0.11274 3.63458 2.94342 28 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 29 3.04202 3.72657 0.10304 3.64608 29 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 30 3.59213 0.11274 3.63458 2.94342 30 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 31 3.23093 2.68543 3.27356 0.15734 31 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 32 3.04202 3.72657 0.10304 3.64608 32 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 33 0.12486 3.51901 2.89141 3.43411 33 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 34 0.12486 3.51901 2.89141 3.43411 34 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 35 3.23093 2.68543 3.27356 0.15734 35 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 36 3.23093 2.68543 3.27356 0.15734 36 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 37 3.23093 2.68543 3.27356 0.15734 37 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 38 0.12486 3.51901 2.89141 3.43411 38 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 39 0.12486 3.51901 2.89141 3.43411 39 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 40 3.04202 3.72657 0.10304 3.64608 40 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 41 3.59213 0.11274 3.63458 2.94342 41 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 42 0.12486 3.51901 2.89141 3.43411 42 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 43 3.23093 2.68543 3.27356 0.15734 43 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 44 0.12486 3.51901 2.89141 3.43411 44 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09276 4.09276 1.46634 0.26236 1.09861 0.40547 45 3.23093 2.68543 3.27356 0.15734 45 - - 1.38629 1.38629 1.38629 1.38629 0.01712 4.07593 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_nineb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:41:05 2012 NSEQ 3 EFFN 3.000000 CKSUM 3743554959 STATS LOCAL MSV -8.1311 0.72123 STATS LOCAL VITERBI -7.9839 0.72123 STATS LOCAL FORWARD -4.0562 0.72123 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.30454 1.51465 1.59551 1.18413 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.70020 2.19823 2.14894 1.28770 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.97980 2.52563 3.03204 0.19727 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.97980 2.52563 3.03204 0.19727 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.97980 2.52563 3.03204 0.19727 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.97980 2.52563 3.03204 0.19727 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.97980 2.52563 3.03204 0.19727 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.97980 2.52563 3.03204 0.19727 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.15719 3.27118 2.73043 3.16274 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.30705 0.14631 3.36166 2.73626 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 3.30705 0.14631 3.36166 2.73626 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.86982 3.47591 0.13017 3.36931 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.97980 2.52563 3.03204 0.19727 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.86982 3.47591 0.13017 3.36931 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.97980 2.52563 3.03204 0.19727 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.97980 2.52563 3.03204 0.19727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.97980 2.52563 3.03204 0.19727 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 0.15719 3.27118 2.73043 3.16274 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.86982 3.47591 0.13017 3.36931 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.97980 2.52563 3.03204 0.19727 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 0.15719 3.27118 2.73043 3.16274 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.97980 2.52563 3.03204 0.19727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_onea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:39:33 2012 NSEQ 2 EFFN 2.000000 CKSUM 781382756 STATS LOCAL MSV -7.5283 0.72797 STATS LOCAL VITERBI -8.3724 0.72797 STATS LOCAL FORWARD -3.0815 0.72797 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.09830 1.60161 1.42113 1.49812 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.57915 2.25909 2.64442 0.28946 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.23862 2.84929 2.43386 2.70756 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.23862 2.84929 2.43386 2.70756 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.53331 3.02441 0.20344 2.88069 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.23862 2.84929 2.43386 2.70756 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_oneb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:39:39 2012 NSEQ 2 EFFN 2.000000 CKSUM 1194618091 STATS LOCAL MSV -7.4605 0.72829 STATS LOCAL VITERBI -8.3928 0.72829 STATS LOCAL FORWARD -3.2424 0.72829 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.09633 1.66831 1.48615 1.38192 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.57915 2.25909 2.64442 0.28946 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.53331 3.02441 0.20344 2.88069 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.23862 2.84929 2.43386 2.70756 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_onec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:39:45 2012 NSEQ 2 EFFN 2.000000 CKSUM 620831756 STATS LOCAL MSV -7.6900 0.72827 STATS LOCAL VITERBI -8.3711 0.72827 STATS LOCAL FORWARD -3.1028 0.72827 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.18992 1.52066 1.49124 1.37796 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.53331 3.02441 0.20344 2.88069 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.23862 2.84929 2.43386 2.70756 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.81865 0.23582 2.88868 2.35662 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_oned_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:39:50 2012 NSEQ 2 EFFN 2.000000 CKSUM 3374549336 STATS LOCAL MSV -7.6531 0.72839 STATS LOCAL VITERBI -8.1622 0.72839 STATS LOCAL FORWARD -3.1511 0.72839 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.18847 1.58865 1.48979 1.32542 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.23862 2.84929 2.43386 2.70756 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.53331 3.02441 0.20344 2.88069 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.23862 2.84929 2.43386 2.70756 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_seven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:40:49 2012 NSEQ 2 EFFN 2.000000 CKSUM 3028493390 STATS LOCAL MSV -7.5398 0.72776 STATS LOCAL VITERBI -8.1250 0.72776 STATS LOCAL FORWARD -3.1186 0.72776 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.18774 1.47240 1.36573 1.55818 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.23862 2.84929 2.43386 2.70756 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.53331 3.02441 0.20344 2.88069 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.23862 2.84929 2.43386 2.70756 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.23862 2.84929 2.43386 2.70756 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_six_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:40:41 2012 NSEQ 10 EFFN 3.530273 CKSUM 1801102075 STATS LOCAL MSV -7.6787 0.71931 STATS LOCAL VITERBI -7.8111 0.71931 STATS LOCAL FORWARD -3.8984 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.05070 1.31736 1.76014 1.55853 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 0.00000 * 1 3.15391 2.63661 3.19954 0.16850 1 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 2 3.15391 2.63661 3.19954 0.16850 2 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 3 1.71207 2.06815 1.14271 0.98314 3 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 4 0.23016 3.12439 2.18555 3.01164 4 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 5 3.50695 0.12174 3.55321 2.88245 5 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 6 0.13370 3.44448 2.84348 3.35230 6 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 7 3.50695 0.12174 3.55321 2.88245 7 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 8 3.50695 0.12174 3.55321 2.88245 8 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 9 3.15391 2.63661 3.19954 0.16850 9 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 10 2.99181 3.65250 0.11032 3.56399 10 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 11 0.13370 3.44448 2.84348 3.35230 11 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 12 0.13370 3.44448 2.84348 3.35230 12 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 13 0.13370 3.44448 2.84348 3.35230 13 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 14 3.15391 2.63661 3.19954 0.16850 14 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 15 3.50695 0.12174 3.55321 2.88245 15 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 16 0.13370 3.44448 2.84348 3.35230 16 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 17 0.13370 3.44448 2.84348 3.35230 17 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 18 2.99181 3.65250 0.11032 3.56399 18 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 19 3.50695 0.12174 3.55321 2.88245 19 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 20 0.13370 3.44448 2.84348 3.35230 20 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 21 0.13370 3.44448 2.84348 3.35230 21 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 22 2.99181 3.65250 0.11032 3.56399 22 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 23 0.13370 3.44448 2.84348 3.35230 23 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 24 2.07180 2.39292 2.65785 0.33886 24 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 25 3.50695 0.12174 3.55321 2.88245 25 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 26 0.13370 3.44448 2.84348 3.35230 26 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 27 3.50695 0.12174 3.55321 2.88245 27 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 28 3.50695 0.12174 3.55321 2.88245 28 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 29 3.50695 0.12174 3.55321 2.88245 29 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 30 2.99181 3.65250 0.11032 3.56399 30 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 31 3.50695 0.12174 3.55321 2.88245 31 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 32 3.15391 2.63661 3.19954 0.16850 32 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 33 2.99181 3.65250 0.11032 3.56399 33 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 34 0.13370 3.44448 2.84348 3.35230 34 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 35 0.13370 3.44448 2.84348 3.35230 35 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 36 3.50695 0.12174 3.55321 2.88245 36 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 37 3.15391 2.63661 3.19954 0.16850 37 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 38 3.15391 2.63661 3.19954 0.16850 38 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 39 0.13370 3.44448 2.84348 3.35230 39 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 40 0.13370 3.44448 2.84348 3.35230 40 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 41 2.99181 3.65250 0.11032 3.56399 41 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 42 3.50695 0.12174 3.55321 2.88245 42 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 43 0.13370 3.44448 2.84348 3.35230 43 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 44 3.15391 2.63661 3.19954 0.16850 44 - - 1.38629 1.38629 1.38629 1.38629 0.03553 4.04835 4.04835 1.46634 0.26236 1.09861 0.40547 45 0.13370 3.44448 2.84348 3.35230 45 - - 1.38629 1.38629 1.38629 1.38629 0.01792 4.03074 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_ten_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:41:15 2012 NSEQ 9 EFFN 3.827637 CKSUM 3971025725 STATS LOCAL MSV -7.3204 0.71932 STATS LOCAL VITERBI -7.7155 0.71932 STATS LOCAL FORWARD -4.1318 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.23642 1.73329 1.50126 1.17110 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 0.00000 * 1 3.24149 2.69213 3.28371 0.15587 1 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 2 3.24149 2.69213 3.28371 0.15587 2 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 3 0.67762 2.30348 2.25602 1.24654 3 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 4 3.04875 3.73654 0.10210 3.65714 4 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 5 3.24149 2.69213 3.28371 0.15587 5 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 6 3.24149 2.69213 3.28371 0.15587 6 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 7 3.60365 0.11159 3.64557 2.95161 7 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 8 3.16295 0.21850 3.22065 2.17116 8 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 9 3.24149 2.69213 3.28371 0.15587 9 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 10 3.04875 3.73654 0.10210 3.65714 10 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 11 0.12371 3.52912 2.89791 3.44523 11 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 12 3.04875 3.73654 0.10210 3.65714 12 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 13 0.12371 3.52912 2.89791 3.44523 13 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 14 3.24149 2.69213 3.28371 0.15587 14 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 15 3.24149 2.69213 3.28371 0.15587 15 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 16 3.04875 3.73654 0.10210 3.65714 16 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 17 3.04875 3.73654 0.10210 3.65714 17 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 18 3.04875 3.73654 0.10210 3.65714 18 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 19 3.24149 2.69213 3.28371 0.15587 19 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 20 3.04875 3.73654 0.10210 3.65714 20 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 21 0.12371 3.52912 2.89791 3.44523 21 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 22 3.04875 3.73654 0.10210 3.65714 22 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 23 0.21841 3.20443 2.20335 3.09683 23 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 24 2.80375 0.37853 2.87066 1.62006 24 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 25 2.39794 2.30920 1.65829 0.47918 25 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 26 0.12371 3.52912 2.89791 3.44523 26 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 27 3.24149 2.69213 3.28371 0.15587 27 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 28 3.60365 0.11159 3.64557 2.95161 28 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 29 3.60365 0.11159 3.64557 2.95161 29 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 30 0.12371 3.52912 2.89791 3.44523 30 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 31 3.60365 0.11159 3.64557 2.95161 31 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 32 3.24149 2.69213 3.28371 0.15587 32 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 33 3.04875 3.73654 0.10210 3.65714 33 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 34 0.12371 3.52912 2.89791 3.44523 34 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 35 0.12371 3.52912 2.89791 3.44523 35 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 36 3.24149 2.69213 3.28371 0.15587 36 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 37 3.24149 2.69213 3.28371 0.15587 37 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 38 3.24149 2.69213 3.28371 0.15587 38 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 39 0.12371 3.52912 2.89791 3.44523 39 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 40 0.12371 3.52912 2.89791 3.44523 40 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 41 0.12371 3.52912 2.89791 3.44523 41 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 42 3.60365 0.11159 3.64557 2.95161 42 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 43 0.12371 3.52912 2.89791 3.44523 43 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 44 3.24149 2.69213 3.28371 0.15587 44 - - 1.38629 1.38629 1.38629 1.38629 0.03374 4.09894 4.09894 1.46634 0.26236 1.09861 0.40547 45 0.12371 3.52912 2.89791 3.44523 45 - - 1.38629 1.38629 1.38629 1.38629 0.01701 4.08221 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_thirteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:42:05 2012 NSEQ 24 EFFN 3.893555 CKSUM 191642901 STATS LOCAL MSV -7.2444 0.71933 STATS LOCAL VITERBI -7.7058 0.71933 STATS LOCAL FORWARD -4.3034 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.16586 1.50746 1.51087 1.40179 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 0.00000 * 1 1.46824 2.04571 2.31358 0.61346 1 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 2 1.05286 2.20903 2.24595 0.83143 2 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 3 2.32070 1.97985 2.68818 0.36284 3 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 4 0.12173 3.54680 2.90925 3.46466 4 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 5 3.06047 3.75390 0.10049 3.67641 5 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 6 0.12173 3.54680 2.90925 3.46466 6 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 7 3.62373 0.10960 3.66473 2.96588 7 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 8 3.62373 0.10960 3.66473 2.96588 8 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 9 3.26001 2.70388 3.30149 0.15334 9 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 10 3.06047 3.75390 0.10049 3.67641 10 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 11 0.12173 3.54680 2.90925 3.46466 11 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 12 0.12173 3.54680 2.90925 3.46466 12 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 13 0.12173 3.54680 2.90925 3.46466 13 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 14 3.26001 2.70388 3.30149 0.15334 14 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 15 3.62373 0.10960 3.66473 2.96588 15 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 16 0.12173 3.54680 2.90925 3.46466 16 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 17 3.06047 3.75390 0.10049 3.67641 17 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 18 2.54857 2.39251 1.90817 0.38264 18 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 19 3.62373 0.10960 3.66473 2.96588 19 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 20 3.06047 3.75390 0.10049 3.67641 20 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 21 0.12173 3.54680 2.90925 3.46466 21 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 22 3.06047 3.75390 0.10049 3.67641 22 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 23 2.39260 3.42516 0.17435 3.32257 23 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 24 3.10643 2.32027 3.15457 0.20538 24 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 25 3.26001 2.70388 3.30149 0.15334 25 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 26 0.12173 3.54680 2.90925 3.46466 26 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 27 3.62373 0.10960 3.66473 2.96588 27 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 28 3.62373 0.10960 3.66473 2.96588 28 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 29 3.62373 0.10960 3.66473 2.96588 29 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 30 3.06047 3.75390 0.10049 3.67641 30 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 31 3.62373 0.10960 3.66473 2.96588 31 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 32 3.26001 2.70388 3.30149 0.15334 32 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 33 3.06047 3.75390 0.10049 3.67641 33 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 34 0.12173 3.54680 2.90925 3.46466 34 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 35 0.12173 3.54680 2.90925 3.46466 35 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 36 2.88119 1.85984 2.93863 0.30748 36 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 37 3.26001 2.70388 3.30149 0.15334 37 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 38 3.26001 2.70388 3.30149 0.15334 38 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 39 0.12173 3.54680 2.90925 3.46466 39 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 40 0.12173 3.54680 2.90925 3.46466 40 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 41 3.06047 3.75390 0.10049 3.67641 41 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 42 3.62373 0.10960 3.66473 2.96588 42 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 43 0.12173 3.54680 2.90925 3.46466 43 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 44 3.26001 2.70388 3.30149 0.15334 44 - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10982 4.10982 1.46634 0.26236 1.09861 0.40547 45 0.12173 3.54680 2.90925 3.46466 45 - - 1.38629 1.38629 1.38629 1.38629 0.01683 4.09327 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Alveolata_4_LSU_start_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Mar 1 14:39:59 2012 NSEQ 8 EFFN 3.683594 CKSUM 435453820 STATS LOCAL MSV -7.5820 0.71933 STATS LOCAL VITERBI -7.6593 0.71933 STATS LOCAL FORWARD -3.8838 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.11795 1.68208 1.35544 1.47302 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 0.00000 * 1 3.02205 3.69704 0.10587 3.61333 1 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 2 0.98857 1.72053 2.09224 1.12236 2 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 3 3.02205 3.69704 0.10587 3.61333 3 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 4 0.12832 3.48915 2.87223 3.40132 4 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 5 3.02205 3.69704 0.10587 3.61333 5 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 6 0.12832 3.48915 2.87223 3.40132 6 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 7 3.55808 0.11624 3.60208 2.91913 7 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 8 0.12832 3.48915 2.87223 3.40132 8 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 9 3.19991 2.66577 3.24376 0.16173 9 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 10 3.02205 3.69704 0.10587 3.61333 10 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 11 0.12832 3.48915 2.87223 3.40132 11 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 12 0.12832 3.48915 2.87223 3.40132 12 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 13 3.02205 3.69704 0.10587 3.61333 13 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 14 3.19991 2.66577 3.24376 0.16173 14 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 15 3.19991 2.66577 3.24376 0.16173 15 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 16 0.12832 3.48915 2.87223 3.40132 16 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 17 3.02205 3.69704 0.10587 3.61333 17 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 18 3.02205 3.69704 0.10587 3.61333 18 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 19 3.55808 0.11624 3.60208 2.91913 19 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 20 3.19991 2.66577 3.24376 0.16173 20 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 21 0.49923 1.63631 2.32597 2.29642 21 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 22 3.02205 3.69704 0.10587 3.61333 22 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 23 3.55808 0.11624 3.60208 2.91913 23 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 24 0.12832 3.48915 2.87223 3.40132 24 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 25 0.60696 1.83062 2.18714 1.70132 25 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 26 0.12832 3.48915 2.87223 3.40132 26 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 27 3.55808 0.11624 3.60208 2.91913 27 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 28 3.55808 0.11624 3.60208 2.91913 28 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 29 3.19991 2.66577 3.24376 0.16173 29 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 30 3.02205 3.69704 0.10587 3.61333 30 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 31 3.55808 0.11624 3.60208 2.91913 31 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 32 3.19991 2.66577 3.24376 0.16173 32 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 33 3.02205 3.69704 0.10587 3.61333 33 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 34 0.12832 3.48915 2.87223 3.40132 34 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 35 0.12832 3.48915 2.87223 3.40132 35 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 36 3.19991 2.66577 3.24376 0.16173 36 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 37 3.19991 2.66577 3.24376 0.16173 37 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 38 3.19991 2.66577 3.24376 0.16173 38 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 39 0.12832 3.48915 2.87223 3.40132 39 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 40 0.12832 3.48915 2.87223 3.40132 40 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 41 3.02205 3.69704 0.10587 3.61333 41 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 42 3.55808 0.11624 3.60208 2.91913 42 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 43 0.12832 3.48915 2.87223 3.40132 43 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 44 3.19991 2.66577 3.24376 0.16173 44 - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 45 0.12832 3.48915 2.87223 3.40132 45 - - 1.38629 1.38629 1.38629 1.38629 0.01744 4.05761 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Alveolata_1_SSU_end_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:43:03 2012 NSEQ 69 EFFN 3.642883 CKSUM 3148699463 STATS LOCAL MSV -7.4489 0.71932 STATS LOCAL VITERBI -7.6281 0.71932 STATS LOCAL FORWARD -4.1382 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33776 1.55982 1.24507 1.42932 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 0.00000 * 1 0.12970 3.47751 2.86475 3.38854 1 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 2 2.93148 3.51149 0.13230 3.20034 2 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 3 3.18787 2.65814 3.23219 0.16347 3 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 4 3.54478 0.11764 3.58937 2.90961 4 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 5 3.01421 3.68548 0.10701 3.60051 5 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 6 3.18787 2.65814 3.23219 0.16347 6 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 7 0.12970 3.47751 2.86475 3.38854 7 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 8 0.12970 3.47751 2.86475 3.38854 8 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 9 3.54478 0.11764 3.58937 2.90961 9 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 10 0.12970 3.47751 2.86475 3.38854 10 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 11 0.36931 1.96424 2.44668 2.50172 11 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 12 2.93148 3.51149 0.13230 3.20034 12 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 13 3.01421 3.68548 0.10701 3.60051 13 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 14 3.18787 2.65814 3.23219 0.16347 14 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 15 2.33627 2.48307 2.82552 0.27372 15 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 16 3.18787 2.65814 3.23219 0.16347 16 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 17 3.54478 0.11764 3.58937 2.90961 17 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 18 3.19125 0.20146 3.24795 2.27802 18 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 19 3.01421 3.68548 0.10701 3.60051 19 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 20 3.18787 2.65814 3.23219 0.16347 20 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 21 0.12970 3.47751 2.86475 3.38854 21 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 22 3.01421 3.68548 0.10701 3.60051 22 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 23 3.01421 3.68548 0.10701 3.60051 23 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 24 3.18787 2.65814 3.23219 0.16347 24 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 25 3.01421 3.68548 0.10701 3.60051 25 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 26 0.12970 3.47751 2.86475 3.38854 26 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 27 0.12970 3.47751 2.86475 3.38854 27 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 28 3.54478 0.11764 3.58937 2.90961 28 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 29 3.54478 0.11764 3.58937 2.90961 29 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 30 3.18787 2.65814 3.23219 0.16347 30 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 31 3.01421 3.68548 0.10701 3.60051 31 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 32 3.54478 0.11764 3.58937 2.90961 32 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 33 2.50860 3.43763 0.16147 3.33578 33 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 34 3.01421 3.68548 0.10701 3.60051 34 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 35 0.12970 3.47751 2.86475 3.38854 35 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 36 0.23093 3.00620 2.64834 2.45388 36 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 37 3.01421 3.68548 0.10701 3.60051 37 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 38 3.01421 3.68548 0.10701 3.60051 38 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 39 0.12970 3.47751 2.86475 3.38854 39 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 40 3.18787 2.65814 3.23219 0.16347 40 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 41 3.54478 0.11764 3.58937 2.90961 41 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 42 0.12970 3.47751 2.86475 3.38854 42 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 43 2.81519 2.59339 3.07078 0.19973 43 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 44 3.18787 2.65814 3.23219 0.16347 44 - - 1.38629 1.38629 1.38629 1.38629 0.03483 4.06781 4.06781 1.46634 0.26236 1.09861 0.40547 45 2.10397 0.41821 2.56367 1.94643 45 - - 1.38629 1.38629 1.38629 1.38629 0.01757 4.05055 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Alveolata_1_SSU_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:43:11 2012 NSEQ 7 EFFN 3.373535 CKSUM 347251863 STATS LOCAL MSV -7.4282 0.71933 STATS LOCAL VITERBI -7.6473 0.71933 STATS LOCAL FORWARD -4.1966 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33048 1.59392 1.30706 1.33977 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 0.00000 * 1 0.13978 3.39641 2.81240 3.29960 1 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 2 2.95876 3.60411 0.11539 3.51048 2 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 3 3.10493 2.60552 3.15246 0.17607 3 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 4 3.45170 0.12801 3.50037 2.84251 4 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 5 2.95876 3.60411 0.11539 3.51048 5 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 6 3.10493 2.60552 3.15246 0.17607 6 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 7 0.13978 3.39641 2.81240 3.29960 7 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 8 0.13978 3.39641 2.81240 3.29960 8 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 9 3.45170 0.12801 3.50037 2.84251 9 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 10 0.13978 3.39641 2.81240 3.29960 10 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 11 2.43739 1.12083 2.50826 0.68281 11 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 12 2.95876 3.60411 0.11539 3.51048 12 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 13 2.95876 3.60411 0.11539 3.51048 13 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 14 3.10493 2.60552 3.15246 0.17607 14 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 15 0.13978 3.39641 2.81240 3.29960 15 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 16 3.10493 2.60552 3.15246 0.17607 16 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 17 3.45170 0.12801 3.50037 2.84251 17 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 18 3.10493 2.60552 3.15246 0.17607 18 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 19 2.95876 3.60411 0.11539 3.51048 19 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 20 3.10493 2.60552 3.15246 0.17607 20 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 21 0.13978 3.39641 2.81240 3.29960 21 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 22 2.95876 3.60411 0.11539 3.51048 22 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 23 2.95876 3.60411 0.11539 3.51048 23 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 24 3.10493 2.60552 3.15246 0.17607 24 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 25 2.95876 3.60411 0.11539 3.51048 25 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 26 0.13978 3.39641 2.81240 3.29960 26 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 27 0.13978 3.39641 2.81240 3.29960 27 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 28 3.45170 0.12801 3.50037 2.84251 28 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 29 3.45170 0.12801 3.50037 2.84251 29 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 30 3.10493 2.60552 3.15246 0.17607 30 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 31 2.95876 3.60411 0.11539 3.51048 31 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 32 3.45170 0.12801 3.50037 2.84251 32 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 33 0.13978 3.39641 2.81240 3.29960 33 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 34 2.95876 3.60411 0.11539 3.51048 34 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 35 0.13978 3.39641 2.81240 3.29960 35 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 36 3.10493 2.60552 3.15246 0.17607 36 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 37 2.95876 3.60411 0.11539 3.51048 37 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 38 2.95876 3.60411 0.11539 3.51048 38 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 39 0.13978 3.39641 2.81240 3.29960 39 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 40 3.10493 2.60552 3.15246 0.17607 40 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 41 3.45170 0.12801 3.50037 2.84251 41 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 42 0.13978 3.39641 2.81240 3.29960 42 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 43 3.10493 2.60552 3.15246 0.17607 43 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 44 3.10493 2.60552 3.15246 0.17607 44 - - 1.38629 1.38629 1.38629 1.38629 0.03654 4.02061 4.02061 1.46634 0.26236 1.09861 0.40547 45 3.45170 0.12801 3.50037 2.84251 45 - - 1.38629 1.38629 1.38629 1.38629 0.01844 4.00251 * 1.46634 0.26236 0.00000 * //