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HMMER3/b [3.0 | March 2010]
NAME  3_End_Eustigmatophyceae_58S_end_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Sep 25 01:39:32 2011
NSEQ  6
EFFN  3.336914
CKSUM 3393550359
STATS LOCAL MSV       -8.0163  0.71932
STATS LOCAL VITERBI   -7.6944  0.71932
STATS LOCAL FORWARD   -4.0151  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.93226  1.59605  1.19721  1.04854
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  0.00000        *
      1   3.43835  0.12958  3.48758  2.83281      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      2   2.95070  3.59237  0.11666  3.49752      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      3   3.43835  0.12958  3.48758  2.83281      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      4   3.09320  2.59806  3.14118  0.17794      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      5   3.09320  2.59806  3.14118  0.17794      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      6   3.09320  2.59806  3.14118  0.17794      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      7   3.43835  0.12958  3.48758  2.83281      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      8   2.95070  3.59237  0.11666  3.49752      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      9   2.95070  3.59237  0.11666  3.49752      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     10   2.95070  3.59237  0.11666  3.49752     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     11   0.14130  3.38481  2.80488  3.28690     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     12   3.09320  2.59806  3.14118  0.17794     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     13   0.14130  3.38481  2.80488  3.28690     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     14   3.09320  2.59806  3.14118  0.17794     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     15   2.95070  3.59237  0.11666  3.49752     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     16   3.43835  0.12958  3.48758  2.83281     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     17   3.43835  0.12958  3.48758  2.83281     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     18   3.43835  0.12958  3.48758  2.83281     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     19   2.95070  3.59237  0.11666  3.49752     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     20   3.09320  2.59806  3.14118  0.17794     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     21   3.09320  2.59806  3.14118  0.17794     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     22   0.14130  3.38481  2.80488  3.28690     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     23   2.95070  3.59237  0.11666  3.49752     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     24   3.43835  0.12958  3.48758  2.83281     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     25   0.14130  3.38481  2.80488  3.28690     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     26   3.09320  2.59806  3.14118  0.17794     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     27   2.95070  3.59237  0.11666  3.49752     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     28   3.09320  2.59806  3.14118  0.17794     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     29   3.09320  2.59806  3.14118  0.17794     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     30   3.09320  2.59806  3.14118  0.17794     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     31   2.95070  3.59237  0.11666  3.49752     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     32   3.09320  2.59806  3.14118  0.17794     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     33   3.09320  2.59806  3.14118  0.17794     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     34   2.95070  3.59237  0.11666  3.49752     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     35   2.95070  3.59237  0.11666  3.49752     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     36   0.14130  3.38481  2.80488  3.28690     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     37   2.95070  3.59237  0.11666  3.49752     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     38   3.09320  2.59806  3.14118  0.17794     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     39   2.95070  3.59237  0.11666  3.49752     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     40   3.09320  2.59806  3.14118  0.17794     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     41   3.43835  0.12958  3.48758  2.83281     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     42   3.09320  2.59806  3.14118  0.17794     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     43   2.95070  3.59237  0.11666  3.49752     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     44   3.09320  2.59806  3.14118  0.17794     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     45   3.09320  2.59806  3.14118  0.17794     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01856  3.99580        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Eustigmatophyceae_58S_start_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Sep 25 01:34:03 2011
NSEQ  6
EFFN  3.213867
CKSUM 1922503689
STATS LOCAL MSV       -8.1335  0.71933
STATS LOCAL VITERBI   -7.6652  0.71933
STATS LOCAL FORWARD   -4.1546  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.22065  1.26567  1.52763  1.58055
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  0.00000        *
      1   3.39218  0.13520  3.44336  2.79911      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
      2   0.14667  3.34479  2.77882  3.24311      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
      3   0.14667  3.34479  2.77882  3.24311      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
      4   3.39218  0.13520  3.44336  2.79911      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
      5   3.05294  2.57242  3.10245  0.18453      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
      6   3.05294  2.57242  3.10245  0.18453      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
      7   3.05294  2.57242  3.10245  0.18453      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
      8   3.39218  0.13520  3.44336  2.79911      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
      9   0.14667  3.34479  2.77882  3.24311      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     10   2.92262  3.55163  0.12119  3.45259     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     11   3.39218  0.13520  3.44336  2.79911     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     12   0.14667  3.34479  2.77882  3.24311     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     13   0.14667  3.34479  2.77882  3.24311     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     14   3.39218  0.13520  3.44336  2.79911     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     15   2.92262  3.55163  0.12119  3.45259     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     16   2.92262  3.55163  0.12119  3.45259     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     17   0.14667  3.34479  2.77882  3.24311     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     18   3.05294  2.57242  3.10245  0.18453     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     19   2.92262  3.55163  0.12119  3.45259     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     20   3.05294  2.57242  3.10245  0.18453     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     21   3.39218  0.13520  3.44336  2.79911     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     22   3.05294  2.57242  3.10245  0.18453     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     23   3.05294  2.57242  3.10245  0.18453     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     24   2.92262  3.55163  0.12119  3.45259     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     25   2.92262  3.55163  0.12119  3.45259     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     26   3.39218  0.13520  3.44336  2.79911     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     27   3.05294  2.57242  3.10245  0.18453     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     28   3.39218  0.13520  3.44336  2.79911     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     29   3.39218  0.13520  3.44336  2.79911     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     30   3.39218  0.13520  3.44336  2.79911     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     31   0.14667  3.34479  2.77882  3.24311     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     32   3.39218  0.13520  3.44336  2.79911     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     33   0.14667  3.34479  2.77882  3.24311     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     34   0.14667  3.34479  2.77882  3.24311     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     35   3.39218  0.13520  3.44336  2.79911     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     36   2.92262  3.55163  0.12119  3.45259     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     37   0.14667  3.34479  2.77882  3.24311     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     38   3.05294  2.57242  3.10245  0.18453     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     39   2.92262  3.55163  0.12119  3.45259     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     40   0.14667  3.34479  2.77882  3.24311     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     41   0.14667  3.34479  2.77882  3.24311     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     42   2.92262  3.55163  0.12119  3.45259     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     43   0.14667  3.34479  2.77882  3.24311     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     44   0.14667  3.34479  2.77882  3.24311     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
     45   3.39218  0.13520  3.44336  2.79911     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01900  3.97290        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Eustigmatophyceae_4_LSU_start_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Sep 25 01:43:21 2011
NSEQ  5
EFFN  3.315430
CKSUM 2420342418
STATS LOCAL MSV       -8.0313  0.71931
STATS LOCAL VITERBI   -7.5738  0.71931
STATS LOCAL FORWARD   -3.9568  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.23266  1.26091  1.60118  1.49866
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  0.00000        *
      1   3.08626  2.59365  3.13451  0.17906      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      2   3.08626  2.59365  3.13451  0.17906      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      3   3.43043  0.13053  3.48000  2.82705      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      4   2.94591  3.58540  0.11742  3.48982      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      5   2.94591  3.58540  0.11742  3.48982      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      6   0.14220  3.37794  2.80041  3.27938      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      7   3.43043  0.13053  3.48000  2.82705      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      8   3.43043  0.13053  3.48000  2.82705      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
      9   3.08626  2.59365  3.13451  0.17906      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     10   3.43043  0.13053  3.48000  2.82705     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     11   3.43043  0.13053  3.48000  2.82705     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     12   0.14220  3.37794  2.80041  3.27938     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     13   0.14220  3.37794  2.80041  3.27938     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     14   3.08626  2.59365  3.13451  0.17906     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     15   3.43043  0.13053  3.48000  2.82705     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     16   0.14220  3.37794  2.80041  3.27938     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     17   0.14220  3.37794  2.80041  3.27938     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     18   2.94591  3.58540  0.11742  3.48982     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     19   3.43043  0.13053  3.48000  2.82705     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     20   0.14220  3.37794  2.80041  3.27938     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     21   0.14220  3.37794  2.80041  3.27938     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     22   2.94591  3.58540  0.11742  3.48982     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     23   2.94591  3.58540  0.11742  3.48982     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     24   3.43043  0.13053  3.48000  2.82705     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     25   3.08626  2.59365  3.13451  0.17906     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     26   0.14220  3.37794  2.80041  3.27938     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     27   3.43043  0.13053  3.48000  2.82705     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     28   3.43043  0.13053  3.48000  2.82705     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     29   3.43043  0.13053  3.48000  2.82705     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     30   2.94591  3.58540  0.11742  3.48982     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     31   3.43043  0.13053  3.48000  2.82705     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     32   3.08626  2.59365  3.13451  0.17906     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     33   2.94591  3.58540  0.11742  3.48982     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     34   0.33543  2.85734  1.81858  2.72885     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     35   0.14220  3.37794  2.80041  3.27938     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     36   3.08626  2.59365  3.13451  0.17906     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     37   3.08626  2.59365  3.13451  0.17906     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     38   3.08626  2.59365  3.13451  0.17906     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     39   0.14220  3.37794  2.80041  3.27938     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     40   0.14220  3.37794  2.80041  3.27938     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     41   2.94591  3.58540  0.11742  3.48982     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     42   3.43043  0.13053  3.48000  2.82705     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     43   0.14220  3.37794  2.80041  3.27938     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     44   3.08626  2.59365  3.13451  0.17906     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
     45   0.14220  3.37794  2.80041  3.27938     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01864  3.99184        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Eustigmatophyceae_1_SSU_end_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Thu Jan 19 22:34:10 2012
NSEQ  6
EFFN  3.225586
CKSUM 778367950
STATS LOCAL MSV       -8.0048  0.71933
STATS LOCAL VITERBI   -7.6831  0.71933
STATS LOCAL FORWARD   -4.1090  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27189  1.62645  1.24659  1.44567
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  0.00000        *
      1   0.14614  3.34867  2.78135  3.24736      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      2   2.92536  3.55560  0.12074  3.45696      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      3   3.05683  2.57491  3.10619  0.18389      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      4   3.39667  0.13464  3.44765  2.80239      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      5   2.92536  3.55560  0.12074  3.45696      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      6   3.05683  2.57491  3.10619  0.18389      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      7   0.14614  3.34867  2.78135  3.24736      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      8   0.14614  3.34867  2.78135  3.24736      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      9   3.39667  0.13464  3.44765  2.80239      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     10   0.14614  3.34867  2.78135  3.24736     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     11   0.14614  3.34867  2.78135  3.24736     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     12   2.92536  3.55560  0.12074  3.45696     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     13   2.92536  3.55560  0.12074  3.45696     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     14   3.05683  2.57491  3.10619  0.18389     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     15   3.05683  2.57491  3.10619  0.18389     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     16   3.05683  2.57491  3.10619  0.18389     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     17   3.39667  0.13464  3.44765  2.80239     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     18   3.39667  0.13464  3.44765  2.80239     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     19   2.92536  3.55560  0.12074  3.45696     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     20   3.05683  2.57491  3.10619  0.18389     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     21   0.14614  3.34867  2.78135  3.24736     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     22   2.92536  3.55560  0.12074  3.45696     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     23   2.92536  3.55560  0.12074  3.45696     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     24   3.05683  2.57491  3.10619  0.18389     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     25   2.92536  3.55560  0.12074  3.45696     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     26   0.14614  3.34867  2.78135  3.24736     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     27   0.14614  3.34867  2.78135  3.24736     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     28   3.39667  0.13464  3.44765  2.80239     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     29   3.39667  0.13464  3.44765  2.80239     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     30   3.05683  2.57491  3.10619  0.18389     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     31   2.92536  3.55560  0.12074  3.45696     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     32   3.39667  0.13464  3.44765  2.80239     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     33   2.92536  3.55560  0.12074  3.45696     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     34   2.92536  3.55560  0.12074  3.45696     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     35   0.14614  3.34867  2.78135  3.24736     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     36   0.14614  3.34867  2.78135  3.24736     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     37   2.92536  3.55560  0.12074  3.45696     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     38   2.92536  3.55560  0.12074  3.45696     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     39   0.14614  3.34867  2.78135  3.24736     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     40   3.05683  2.57491  3.10619  0.18389     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     41   3.39667  0.13464  3.44765  2.80239     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     42   0.14614  3.34867  2.78135  3.24736     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     43   3.05683  2.57491  3.10619  0.18389     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     44   3.05683  2.57491  3.10619  0.18389     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     45   0.14614  3.34867  2.78135  3.24736     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01896  3.97511        *  1.46634  0.26236  0.00000        *
//