Mercurial > repos > onnodg > add_taxonomic_labels

comparison add_taxonomic_labels.py @ 4:04ec86bdac32 draft default tip

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planemo upload for repository https://github.com/Onnodg/Naturalis_NLOOR/tree/main/NLOOR_scripts/add_header_tool commit 4017d38cf327c48a6252e488ba792527dae97a70-dirty
author onnodg
date Mon, 15 Dec 2025 17:01:06 +0000
parents f4b8ab4ed24e
children
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3:081b11f0aa4a 4:04ec86bdac32
95 line += new_taxa 95 line += new_taxa
96 outfile.write(f'{line}\n') 96 outfile.write(f'{line}\n')
97 97
98 98
99 def main(arg_list=None): 99 def main(arg_list=None):
100 # arg_list = [
101 # '--input_file', 'test-data/input.fa.tabular',
102 # '--output_file', 'test-data/output_fa.tabular',
103 # ]
100 args = parse_arguments(arg_list) 104 args = parse_arguments(arg_list)
101 add_labels(args.input_file, args.output_file, args.taxon_levels) 105 add_labels(args.input_file, args.output_file, args.taxon_levels)
102 106
103 107
104 if __name__ == '__main__': 108 if __name__ == '__main__':