Mercurial > repos > onnodg > add_taxonomic_labels

diff tests/test_add_taxonomic_labels.py @ 2:f4b8ab4ed24e draft

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planemo upload for repository https://github.com/Onnodg/Naturalis_NLOOR/tree/main/NLOOR_scripts/add_header_tool commit 4017d38cf327c48a6252e488ba792527dae97a70-dirty
author onnodg
date Mon, 15 Dec 2025 16:49:00 +0000
parents abd214795fa5
children
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--- a/tests/test_add_taxonomic_labels.py	Mon Oct 20 12:25:29 2025 +0000
+++ b/tests/test_add_taxonomic_labels.py	Mon Dec 15 16:49:00 2025 +0000
@@ -66,11 +66,11 @@
 
         # Check first data line
         first_data_line = lines[1].strip()
-        assert 'M01687:476:000000000-LL5F5:1:1101:20413:7447_PairEnd(1)	source=NCBI   sequenceID=HM590330   superkingdom=Eukaryota   kingdom=Viridiplantae   phylum=Streptophyta   subphylum=Streptophytina   class=Magnoliopsida   subclass=NA   infraclass=NA   order=Malpighiales   suborder=NA   infraorder=NA   superfamily=NA   family=Salicaceae   genus=Populus   species=Populus tremula   markercode=trnL   lat=50.47   lon=-104.37	source=NCBI	N/A	100.000	91	8.47e-10	54.7	NCBI	Viridiplantae / Streptophyta / Magnoliopsida / Malpighiales / Salicaceae / Populus / Populus tremula' in first_data_line
+        assert 'M01687:476:000000000-LL5F5:1:1101:20413:7447_PairEnd(1)\tmarkercode=trnL   lat=50.47   lon=-104.37\tHM590330\tN/A\t100.000\t91\t8.47e-10\t54.7\tNCBI\tViridiplantae / Streptophyta / Magnoliopsida / Malpighiales / Salicaceae / Populus / Populus tremula' in first_data_line
 
         # Check second data line
         second_data_line = lines[2].strip()
-        assert 'M01687:476:000000000-LL5F5:1:2115:26447:7735_CONS(16)	source=NCBI   sequenceID=KC539736   superkingdom=Eukaryota   kingdom=Viridiplantae   phylum=Streptophyta   subphylum=Streptophytina   class=Magnoliopsida   subclass=NA   infraclass=NA   order=Rosales   suborder=NA   infraorder=NA   superfamily=NA   family=Ulmaceae   genus=Ulmus   species=Ulmus laevis   markercode=trnL   lat=NA   lon=NA	source=NCBI	N/A	100.000	89	1.44e-38	152	NCBI	Viridiplantae / Streptophyta / Magnoliopsida / Rosales / Ulmaceae / Ulmus / Ulmus laevis' in second_data_line
+        assert 'M01687:476:000000000-LL5F5:1:2115:26447:7735_CONS(16)\tmarkercode=trnL   lat=NA   lon=NA\tKC539736\tN/A\t100.000\t89\t1.44e-38\t152\tNCBI\tViridiplantae / Streptophyta / Magnoliopsida / Rosales / Ulmaceae / Ulmus / Ulmus laevis' in second_data_line
 
     def test_single_taxon_level(self, temp_files):
         """Test processing with only one taxonomic level."""