annotate test-data/output_taxa_output.txt @ 1:2acf82433aa4 draft default tip

planemo upload for repository https://github.com/Onnodg/Naturalis_NLOOR/tree/main/NLOOR_scripts/process_annotations_tool commit d771f9fbfd42bcdeda1623d954550882a0863847-dirty

Uncertain count per taxonomie level{'K': 0, 'P': 0, 'C': 0, 'O': 18, 'F': 10, 'G': 615, 'S': 1285}
percentage_rooted	number_rooted	total_num	taxon_level	indentificatie
100.00	3373	3373	K	Viridiplantae
100.00	3373	3373	P	  Streptophyta
99.97	3372	3373	C	    Magnoliopsida
1.96	66	3373	O	      Apiales
1.96	66	3373	F	        Apiaceae
1.22	41	3373	G	          Aegopodium
1.22	41	3373	S	            Aegopodium podagraria
0.27	9	3373	G	          Apium
0.27	9	3373	S	            Apium graveolens
0.47	16	3373	G	          Uncertain taxa
4.77	161	3373	O	      Asterales
4.77	161	3373	F	        Asteraceae
0.06	2	3373	G	          Achillea
0.06	2	3373	S	            Achillea millefolium
0.15	5	3373	G	          Artemisia
0.15	5	3373	S	            Uncertain taxa
0.03	1	3373	G	          Calendula
0.03	1	3373	S	            Uncertain taxa
0.56	19	3373	G	          Cirsium
0.50	17	3373	S	            Cirsium arvense
0.06	2	3373	S	            Cirsium vulgare
0.06	2	3373	G	          Erigeron
0.06	2	3373	S	            Uncertain taxa
0.03	1	3373	G	          Galinsoga
0.03	1	3373	S	            Uncertain taxa
0.03	1	3373	G	          Gnaphalium
0.03	1	3373	S	            Gnaphalium uliginosum
0.03	1	3373	G	          Inula
0.03	1	3373	S	            Inula salicina
0.03	1	3373	G	          Lactuca
0.03	1	3373	S	            Lactuca sativa
0.06	2	3373	G	          Matricaria
0.06	2	3373	S	            Matricaria chamomilla
0.12	4	3373	G	          Tussilago
0.12	4	3373	S	            Tussilago farfara
3.56	120	3373	G	          Uncertain taxa
0.06	2	3373	G	          Xanthium
0.06	2	3373	S	            Xanthium strumarium
0.06	2	3373	O	      Boraginales
0.06	2	3373	F	        Boraginaceae
0.06	2	3373	G	          Echium
0.06	2	3373	S	            Echium vulgare
0.18	6	3373	O	      Brassicales
0.18	6	3373	F	        Brassicaceae
0.06	2	3373	G	          Brassica
0.06	2	3373	S	            Brassica oleracea
0.03	1	3373	G	          Capsella
0.03	1	3373	S	            Capsella bursa-pastoris
0.09	3	3373	G	          Cardamine
0.09	3	3373	S	            Uncertain taxa
3.23	109	3373	O	      Caryophyllales
3.23	109	3373	F	        Polygonaceae
0.03	1	3373	G	          Fagopyrum
0.03	1	3373	S	            Fagopyrum esculentum
0.03	1	3373	G	          Persicaria
0.03	1	3373	S	            Uncertain taxa
0.86	29	3373	G	          Polygonum
0.86	29	3373	S	            Polygonum aviculare
2.25	76	3373	G	          Rumex
2.25	76	3373	S	            Uncertain taxa
0.06	2	3373	G	          Uncertain taxa
0.03	1	3373	O	      Celastrales
0.03	1	3373	F	        Celastraceae
0.03	1	3373	G	          Euonymus
0.03	1	3373	S	            Euonymus europaeus
0.06	2	3373	O	      Cornales
0.06	2	3373	F	        Cornaceae
0.06	2	3373	G	          Cornus
0.03	1	3373	S	            Cornus mas
0.03	1	3373	S	            Cornus sericea
0.12	4	3373	O	      Dipsacales
0.12	4	3373	F	        Adoxaceae
0.12	4	3373	G	          Sambucus
0.12	4	3373	S	            Uncertain taxa
0.21	7	3373	O	      Ericales
0.03	1	3373	F	        Ericaceae
0.03	1	3373	G	          Calluna
0.03	1	3373	S	            Calluna vulgaris
0.18	6	3373	F	        Primulaceae
0.18	6	3373	G	          Lysimachia
0.03	1	3373	S	            Lysimachia thyrsiflora
0.12	4	3373	S	            Lysimachia vulgaris
0.03	1	3373	S	            Uncertain taxa
4.18	141	3373	O	      Fabales
4.18	141	3373	F	        Fabaceae
0.47	16	3373	G	          Lathyrus
0.47	16	3373	S	            Lathyrus pratensis
0.03	1	3373	G	          Pisum
0.03	1	3373	S	            Pisum sativum
3.35	113	3373	G	          Trifolium
0.12	4	3373	S	            Trifolium arvense
2.64	89	3373	S	            Trifolium medium
0.36	12	3373	S	            Trifolium repens
0.24	8	3373	S	            Uncertain taxa
0.03	1	3373	G	          Uncertain taxa
0.30	10	3373	G	          Vicia
0.27	9	3373	S	            Vicia faba
0.03	1	3373	S	            Vicia hirsuta
11.71	395	3373	O	      Fagales
9.22	311	3373	F	        Betulaceae
5.72	193	3373	G	          Alnus
5.72	193	3373	S	            Alnus incana
0.56	19	3373	G	          Betula
0.56	19	3373	S	            Betula pendula
2.70	91	3373	G	          Carpinus
2.70	91	3373	S	            Carpinus betulus
0.24	8	3373	G	          Uncertain taxa
2.28	77	3373	F	        Fagaceae
0.44	15	3373	G	          Fagus
0.44	15	3373	S	            Fagus sylvatica
1.84	62	3373	G	          Quercus
1.84	62	3373	S	            Quercus rubra
0.21	7	3373	F	        Juglandaceae
0.21	7	3373	G	          Juglans
0.21	7	3373	S	            Juglans regia
0.06	2	3373	O	      Gentianales
0.06	2	3373	F	        Apocynaceae
0.06	2	3373	G	          Vinca
0.06	2	3373	S	            Vinca minor
6.70	226	3373	O	      Lamiales
2.25	76	3373	F	        Lamiaceae
0.27	9	3373	G	          Glechoma
0.27	9	3373	S	            Glechoma hederacea
0.27	9	3373	G	          Mentha
0.27	9	3373	S	            Uncertain taxa
0.03	1	3373	G	          Teucrium
0.03	1	3373	S	            Uncertain taxa
1.69	57	3373	G	          Uncertain taxa
0.09	3	3373	F	        Orobanchaceae
0.06	2	3373	G	          Orobanche
0.06	2	3373	S	            Uncertain taxa
0.03	1	3373	G	          Rhinanthus
0.03	1	3373	S	            Uncertain taxa
4.36	147	3373	F	        Plantaginaceae
3.97	134	3373	G	          Plantago
0.65	22	3373	S	            Plantago lanceolata
3.23	109	3373	S	            Plantago major
0.09	3	3373	S	            Uncertain taxa
0.39	13	3373	G	          Veronica
0.39	13	3373	S	            Veronica chamaedrys
12.01	405	3373	O	      Malpighiales
0.03	1	3373	F	        Euphorbiaceae
0.03	1	3373	G	          Euphorbia
0.03	1	3373	S	            Euphorbia myrsinites
0.30	10	3373	F	        Linaceae
0.30	10	3373	G	          Linum
0.30	10	3373	S	            Linum usitatissimum
11.68	394	3373	F	        Salicaceae
11.68	394	3373	G	          Populus
11.24	379	3373	S	            Populus tremula
0.44	15	3373	S	            Uncertain taxa
0.15	5	3373	O	      Malvales
0.03	1	3373	F	        Malvaceae
0.03	1	3373	G	          Hibiscus
0.03	1	3373	S	            Hibiscus trionum
0.12	4	3373	F	        Thymelaeaceae
0.12	4	3373	G	          Daphne
0.12	4	3373	S	            Daphne mezereum
0.18	6	3373	O	      Myrtales
0.18	6	3373	F	        Onagraceae
0.03	1	3373	G	          Circaea
0.03	1	3373	S	            Circaea lutetiana
0.15	5	3373	G	          Uncertain taxa
0.03	1	3373	O	      Oxalidales
0.03	1	3373	F	        Oxalidaceae
0.03	1	3373	G	          Oxalis
0.03	1	3373	S	            Uncertain taxa
0.03	1	3373	O	      Piperales
0.03	1	3373	F	        Aristolochiaceae
0.03	1	3373	G	          Aristolochia
0.03	1	3373	S	            Aristolochia clematitis
9.52	321	3373	O	      Poales
9.52	321	3373	F	        Poaceae
0.83	28	3373	G	          Festuca
0.83	28	3373	S	            Festuca rubra
2.85	96	3373	G	          Poa
0.09	3	3373	S	            Poa compressa
0.03	1	3373	S	            Poa pratensis
0.03	1	3373	S	            Poa trivialis
2.70	91	3373	S	            Uncertain taxa
5.84	197	3373	G	          Uncertain taxa
4.74	160	3373	O	      Ranunculales
4.74	160	3373	F	        Ranunculaceae
4.68	158	3373	G	          Ranunculus
0.03	1	3373	S	            Ranunculus acris
0.30	10	3373	S	            Ranunculus muricatus
4.33	146	3373	S	            Ranunculus repens
0.03	1	3373	S	            Uncertain taxa
0.06	2	3373	G	          Uncertain taxa
34.42	1161	3373	O	      Rosales
0.21	7	3373	F	        Cannabaceae
0.21	7	3373	G	          Humulus
0.21	7	3373	S	            Humulus lupulus
2.61	88	3373	F	        Rosaceae
0.56	19	3373	G	          Filipendula
0.56	19	3373	S	            Filipendula ulmaria
0.39	13	3373	G	          Pyrus
0.39	13	3373	S	            Pyrus communis
0.09	3	3373	G	          Rubus
0.09	3	3373	S	            Rubus idaeus
1.57	53	3373	G	          Uncertain taxa
31.40	1059	3373	F	        Ulmaceae
31.40	1059	3373	G	          Ulmus
31.40	1059	3373	S	            Uncertain taxa
0.18	6	3373	F	        Uncertain taxa
0.03	1	3373	F	        Urticaceae
0.03	1	3373	G	          Urtica
0.03	1	3373	S	            Urtica dioica
5.10	172	3373	O	      Solanales
0.36	12	3373	F	        Convolvulaceae
0.36	12	3373	G	          Convolvulus
0.36	12	3373	S	            Convolvulus arvensis
4.62	156	3373	F	        Solanaceae
0.03	1	3373	G	          Capsicum
0.03	1	3373	S	            Capsicum annuum
0.03	1	3373	G	          Nicandra
0.03	1	3373	S	            Nicandra physalodes
4.57	154	3373	G	          Uncertain taxa
0.12	4	3373	F	        Uncertain taxa
0.53	18	3373	O	      Uncertain taxa
0.03	1	3373	C	    Pinopsida
0.03	1	3373	O	      Cupressales
0.03	1	3373	F	        Taxaceae
0.03	1	3373	G	          Taxus
0.03	1	3373	S	            Taxus baccata