diff test-data/advanced_circle_data.txt @ 2:9ca209477dfd draft default tip

planemo upload for repository https://github.com/Onnodg/Naturalis_NLOOR/tree/main/NLOOR_scripts/process_annotations_tool commit 4017d38cf327c48a6252e488ba792527dae97a70-dirty

--- a/test-data/advanced_circle_data.txt	Mon Oct 20 12:26:51 2025 +0000
+++ b/test-data/advanced_circle_data.txt	Mon Dec 15 16:43:36 2025 +0000
@@ -1,63 +1,50 @@
 [
   {
     "labels": [
-      "Bacteria",
       "Uncertain taxa",
       "Viridiplantae"
     ],
     "sizes": [
-      2,
       1,
-      32
+      20
     ]
   },
   {
     "labels": [
-      "Pseudomonadota",
       "Uncertain taxa",
       "Streptophyta"
     ],
     "sizes": [
-      2,
       1,
-      32
+      20
     ]
   },
   {
     "labels": [
-      "Gammaproteobacteria",
       "Uncertain taxa",
-      "Bryopsida",
       "Magnoliopsida"
     ],
     "sizes": [
-      2,
       1,
-      1,
-      31
+      20
     ]
   },
   {
     "labels": [
-      "Thiohalobacterales",
-      "Xanthomonadales",
       "Uncertain taxa",
-      "Funariales",
+      "Alismatales",
       "Apiales",
       "Asterales",
       "Caryophyllales",
+      "Ceratophyllales",
       "Fabales",
       "Fagales",
-      "Lamiales",
+      "Gentianales",
       "Malpighiales",
       "Malvales",
       "Poales",
-      "Ranunculales",
       "Rosales",
-      "Sapindales",
-      "Saxifragales",
-      "Solanales",
-      "Vitales"
+      "Uncertain taxa"
     ],
     "sizes": [
       1,
@@ -67,103 +54,35 @@
       1,
       1,
       1,
+      3,
       2,
-      3,
-      4,
-      6,
       2,
       1,
-      1,
-      5,
-      1,
-      1,
-      1,
+      3,
+      2,
       1
     ]
   },
   {
     "labels": [
-      "Thiohalobacteraceae",
-      "Xanthomonadaceae",
       "Uncertain taxa",
-      "Funariaceae",
-      "Apiaceae",
+      "Butomaceae",
+      "Araliaceae",
       "Asteraceae",
       "Polygonaceae",
+      "Ceratophyllaceae",
       "Fabaceae",
       "Betulaceae",
       "Fagaceae",
-      "Oleaceae",
-      "Plantaginaceae",
-      "Linaceae",
+      "Juglandaceae",
+      "Rubiaceae",
       "Salicaceae",
-      "Uncertain taxa",
       "Malvaceae",
+      "Juncaceae",
       "Poaceae",
-      "Ranunculaceae",
+      "Cannabaceae",
       "Rosaceae",
-      "Ulmaceae",
-      "Anacardiaceae",
-      "Saxifragaceae",
-      "Solanaceae",
-      "Vitaceae"
-    ],
-    "sizes": [
-      1,
-      1,
-      1,
-      1,
-      1,
-      1,
-      1,
-      2,
-      1,
-      2,
-      3,
-      1,
-      1,
-      4,
-      1,
-      2,
-      1,
-      1,
-      1,
-      4,
-      1,
-      1,
-      1,
-      1
-    ]
-  },
-  {
-    "labels": [
-      "Thiohalobacter",
-      "Thermomonas",
-      "Uncertain taxa",
-      "Funaria",
-      "Uncertain taxa",
-      "Cicerbita",
-      "Rumex",
-      "Indigofera",
-      "Trifolium",
-      "Alnus",
-      "Quercus",
-      "Uncertain taxa",
-      "Plantago",
-      "Linum",
-      "Populus",
-      "Uncertain taxa",
-      "Uncertain taxa",
-      "Firmiana",
-      "Tilia",
-      "Uncertain taxa",
-      "Ranunculus",
-      "Uncertain taxa",
-      "Zelkova",
-      "Mangifera",
-      "Saxifraga",
-      "Nicotiana",
-      "Vitis"
+      "Uncertain taxa"
     ],
     "sizes": [
       1,
@@ -177,19 +96,10 @@
       1,
       1,
       2,
-      3,
-      1,
-      1,
-      2,
       2,
       1,
       1,
-      1,
-      1,
-      1,
-      1,
-      4,
-      1,
+      2,
       1,
       1,
       1
@@ -197,31 +107,25 @@
   },
   {
     "labels": [
-      "Thiohalobacter sp. COW1",
-      "Thermomonas brevis",
       "Uncertain taxa",
-      "Uncertain taxa",
+      "Butomus",
       "Uncertain taxa",
-      "Cicerbita alpina",
-      "Uncertain taxa",
-      "Uncertain taxa",
-      "Uncertain taxa",
-      "Uncertain taxa",
-      "Uncertain taxa",
+      "Achillea",
+      "Polygonum",
+      "Ceratophyllum",
+      "Hippocrepis",
+      "Alnus",
+      "Castanea",
       "Uncertain taxa",
-      "Plantago asiatica",
-      "Uncertain taxa",
+      "Galium",
       "Uncertain taxa",
-      "Uncertain taxa",
-      "Uncertain taxa",
-      "Uncertain taxa",
+      "Populus",
       "Uncertain taxa",
-      "Uncertain taxa",
-      "Uncertain taxa",
+      "Tilia",
+      "Juncus",
+      "Alopecurus",
       "Uncertain taxa",
-      "Uncertain taxa",
-      "Uncertain taxa",
-      "Uncertain taxa",
+      "Humulus",
       "Uncertain taxa",
       "Uncertain taxa"
     ],
@@ -236,19 +140,61 @@
       1,
       1,
       1,
-      2,
-      3,
       1,
       1,
-      2,
-      2,
+      1,
+      1,
       1,
       1,
       1,
       1,
       1,
       1,
-      4,
+      1
+    ]
+  },
+  {
+    "labels": [
+      "Uncertain taxa",
+      "Butomus umbellatus",
+      "Uncertain taxa",
+      "Achillea millefolium",
+      "Uncertain taxa",
+      "Ceratophyllum demersum",
+      "Hippocrepis comosa",
+      "Uncertain taxa",
+      "Uncertain taxa",
+      "Uncertain taxa",
+      "Uncertain taxa",
+      "Uncertain taxa",
+      "Uncertain taxa",
+      "Uncertain taxa",
+      "Uncertain taxa",
+      "Juncus gerardii",
+      "Alopecurus bulbosus",
+      "Uncertain taxa",
+      "Humulus lupulus",
+      "Uncertain taxa",
+      "Uncertain taxa"
+    ],
+    "sizes": [
+      1,
+      1,
+      1,
+      1,
+      1,
+      1,
+      1,
+      1,
+      1,
+      1,
+      1,
+      1,
+      1,
+      1,
+      1,
+      1,
+      1,
       1,
       1,
       1,