diff test-data/prev4.log @ 2:9ca209477dfd draft default tip

planemo upload for repository https://github.com/Onnodg/Naturalis_NLOOR/tree/main/NLOOR_scripts/process_annotations_tool commit 4017d38cf327c48a6252e488ba792527dae97a70-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/prev4.log	Mon Dec 15 16:43:36 2025 +0000
@@ -0,0 +1,42 @@
+Starting processing for FASTA
+=== PARAMETERS USED ===
+uncertain_threshold: 0.9
+eval_threshold: 1e-10
+use_counts: False
+ignore_rank: unknown
+ignore_taxonomy: environmental
+bitscore_perc_cutoff: 0.0
+min_bitscore: 10
+ignore_obiclean_type: singleton
+ignore_illuminapairend_type: pairend
+min_identity: 0
+min_coverage: 0
+ignore_seqids: 
+min_support: 0
+=== END PARAMETERS ===
+Filtered FASTA written succesfully(1790 sequences)
+FASTA: total headers: 2156
+FASTA: headers kept after filters and min_support=0: 1790
+FASTA: removed due to header filters (illumina/obiclean/etc.): 366
+FASTA: removed due to low dereplicated count (<0): 0
+FASTA: total invalid (header filter + low support): 366
+Reading BLAST annotations
+BLAST: total hits read: 21506
+BLAST: hits kept after quality filters: 20339
+BLAST: hits filtered (evalue/coverage/identity/bitscore): 1167
+BLAST: hits removed due to invalid taxon: 1167
+BLAST: hits removed due to ignored seqids: 0
+Note: 71 BLAST q_ids not in FASTA (showing up to 10): ['M01687:460:000000000-LGY9G:1:1101:11918:3518_CONS(1)', 'M01687:460:000000000-LGY9G:1:1101:12996:3690_CONS(1)', 'M01687:460:000000000-LGY9G:1:1101:11564:11468_CONS(1)', 'M01687:460:000000000-LGY9G:1:1102:19358:5472_CONS(1)', 'M01687:460:000000000-LGY9G:1:1102:16411:17215_CONS(1)', 'M01687:460:000000000-LGY9G:1:2114:4805:4734_CONS(1)', 'M01687:460:000000000-LGY9G:1:2114:7472:19038_CONS(1)', 'M01687:460:000000000-LGY9G:1:2115:14232:10846_CONS(1)', 'M01687:460:000000000-LGY9G:1:2112:8197:5045_CONS(1)', 'M01687:460:000000000-LGY9G:1:2112:26865:11154_CONS(1)']
+ANNOTATION: total FASTA headers considered: 1790
+ANNOTATION: reads with BLAST hits: 810
+ANNOTATION: reads without BLAST hits: 980
+ANNOTATION: unique annotated count (from header counts): 51245
+ANNOTATION: total unique count (from FASTA): 66132
+Header annotations written succesfully
+=== ANNOTATION STATISTICS ===
+percentage_annotated: 37.569573283859
+annotated_sequences: 810
+total_sequences: 2156
+percentage_unique_annotated: 77.4889614709974
+unique_annotated: 51245
+total_unique: 66132
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