Mercurial > repos > onnodg > blast_annotations_processor
diff test-data/obiclean_output2.txt @ 2:9ca209477dfd draft default tip
planemo upload for repository https://github.com/Onnodg/Naturalis_NLOOR/tree/main/NLOOR_scripts/process_annotations_tool commit 4017d38cf327c48a6252e488ba792527dae97a70-dirty
| author | onnodg |
|---|---|
| date | Mon, 15 Dec 2025 16:43:36 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/obiclean_output2.txt Mon Dec 15 16:43:36 2025 +0000 @@ -0,0 +1,175 @@ +Uncertain count per taxonomic level{'K': 0, 'P': 0, 'C': 0, 'O': 13, 'F': 7, 'G': 575, 'S': 1227} +percentage_rooted number_rooted total_num taxon_level indentificatie +100.00 3156 3156 K Viridiplantae +100.00 3156 3156 P Streptophyta +100.00 3156 3156 C Magnoliopsida +1.74 55 3156 O Apiales +1.74 55 3156 F Apiaceae +1.14 36 3156 G Aegopodium +1.14 36 3156 S Aegopodium podagraria +0.16 5 3156 G Apium +0.16 5 3156 S Apium graveolens +0.44 14 3156 G Uncertain taxa +4.78 151 3156 O Asterales +4.78 151 3156 F Asteraceae +0.06 2 3156 G Achillea +0.06 2 3156 S Achillea millefolium +0.16 5 3156 G Artemisia +0.16 5 3156 S Uncertain taxa +0.54 17 3156 G Cirsium +0.48 15 3156 S Cirsium arvense +0.06 2 3156 S Cirsium vulgare +0.06 2 3156 G Erigeron +0.06 2 3156 S Uncertain taxa +0.03 1 3156 G Galinsoga +0.03 1 3156 S Uncertain taxa +0.03 1 3156 G Gnaphalium +0.03 1 3156 S Gnaphalium uliginosum +0.03 1 3156 G Inula +0.03 1 3156 S Inula salicina +0.03 1 3156 G Lactuca +0.03 1 3156 S Lactuca sativa +0.06 2 3156 G Matricaria +0.06 2 3156 S Matricaria chamomilla +0.13 4 3156 G Tussilago +0.13 4 3156 S Tussilago farfara +3.58 113 3156 G Uncertain taxa +0.06 2 3156 G Xanthium +0.06 2 3156 S Xanthium strumarium +0.10 3 3156 O Brassicales +0.10 3 3156 F Brassicaceae +0.10 3 3156 G Cardamine +0.10 3 3156 S Uncertain taxa +3.26 103 3156 O Caryophyllales +3.26 103 3156 F Polygonaceae +0.92 29 3156 G Polygonum +0.92 29 3156 S Polygonum aviculare +2.28 72 3156 G Rumex +2.28 72 3156 S Uncertain taxa +0.06 2 3156 G Uncertain taxa +0.03 1 3156 O Cornales +0.03 1 3156 F Cornaceae +0.03 1 3156 G Cornus +0.03 1 3156 S Cornus mas +0.13 4 3156 O Dipsacales +0.13 4 3156 F Adoxaceae +0.13 4 3156 G Sambucus +0.13 4 3156 S Uncertain taxa +0.19 6 3156 O Ericales +0.03 1 3156 F Ericaceae +0.03 1 3156 G Calluna +0.03 1 3156 S Calluna vulgaris +0.16 5 3156 F Primulaceae +0.16 5 3156 G Lysimachia +0.03 1 3156 S Lysimachia thyrsiflora +0.13 4 3156 S Lysimachia vulgaris +4.15 131 3156 O Fabales +4.15 131 3156 F Fabaceae +0.48 15 3156 G Lathyrus +0.48 15 3156 S Lathyrus pratensis +0.03 1 3156 G Pisum +0.03 1 3156 S Pisum sativum +3.36 106 3156 G Trifolium +0.10 3 3156 S Trifolium arvense +2.76 87 3156 S Trifolium medium +0.32 10 3156 S Trifolium repens +0.19 6 3156 S Uncertain taxa +0.03 1 3156 G Uncertain taxa +0.25 8 3156 G Vicia +0.25 8 3156 S Vicia faba +11.44 361 3156 O Fagales +9.19 290 3156 F Betulaceae +5.77 182 3156 G Alnus +5.77 182 3156 S Alnus incana +0.51 16 3156 G Betula +0.51 16 3156 S Betula pendula +2.72 86 3156 G Carpinus +2.72 86 3156 S Carpinus betulus +0.19 6 3156 G Uncertain taxa +2.15 68 3156 F Fagaceae +0.35 11 3156 G Fagus +0.35 11 3156 S Fagus sylvatica +1.81 57 3156 G Quercus +1.81 57 3156 S Quercus rubra +0.10 3 3156 F Juglandaceae +0.10 3 3156 G Juglans +0.10 3 3156 S Juglans regia +0.06 2 3156 O Gentianales +0.06 2 3156 F Apocynaceae +0.06 2 3156 G Vinca +0.06 2 3156 S Vinca minor +6.81 215 3156 O Lamiales +2.25 71 3156 F Lamiaceae +0.25 8 3156 G Glechoma +0.25 8 3156 S Glechoma hederacea +0.25 8 3156 G Mentha +0.25 8 3156 S Uncertain taxa +1.74 55 3156 G Uncertain taxa +0.03 1 3156 F Orobanchaceae +0.03 1 3156 G Orobanche +0.03 1 3156 S Uncertain taxa +4.53 143 3156 F Plantaginaceae +4.15 131 3156 G Plantago +0.70 22 3156 S Plantago lanceolata +3.45 109 3156 S Plantago major +0.38 12 3156 G Veronica +0.38 12 3156 S Veronica chamaedrys +11.63 367 3156 O Malpighiales +0.32 10 3156 F Linaceae +0.32 10 3156 G Linum +0.32 10 3156 S Linum usitatissimum +11.31 357 3156 F Salicaceae +11.31 357 3156 G Populus +11.12 351 3156 S Populus tremula +0.19 6 3156 S Uncertain taxa +0.10 3 3156 O Malvales +0.10 3 3156 F Thymelaeaceae +0.10 3 3156 G Daphne +0.10 3 3156 S Daphne mezereum +0.13 4 3156 O Myrtales +0.13 4 3156 F Onagraceae +0.13 4 3156 G Uncertain taxa +9.73 307 3156 O Poales +9.73 307 3156 F Poaceae +0.86 27 3156 G Festuca +0.86 27 3156 S Festuca rubra +3.01 95 3156 G Poa +0.10 3 3156 S Poa compressa +0.03 1 3156 S Poa pratensis +0.03 1 3156 S Poa trivialis +2.85 90 3156 S Uncertain taxa +5.86 185 3156 G Uncertain taxa +4.75 150 3156 O Ranunculales +4.75 150 3156 F Ranunculaceae +4.75 150 3156 G Ranunculus +0.25 8 3156 S Ranunculus muricatus +4.47 141 3156 S Ranunculus repens +0.03 1 3156 S Uncertain taxa +35.30 1114 3156 O Rosales +0.22 7 3156 F Cannabaceae +0.22 7 3156 G Humulus +0.22 7 3156 S Humulus lupulus +2.41 76 3156 F Rosaceae +0.48 15 3156 G Filipendula +0.48 15 3156 S Filipendula ulmaria +0.41 13 3156 G Pyrus +0.41 13 3156 S Pyrus communis +0.03 1 3156 G Rubus +0.03 1 3156 S Rubus idaeus +1.49 47 3156 G Uncertain taxa +32.57 1028 3156 F Ulmaceae +32.57 1028 3156 G Ulmus +32.57 1028 3156 S Uncertain taxa +0.10 3 3156 F Uncertain taxa +5.26 166 3156 O Solanales +0.38 12 3156 F Convolvulaceae +0.38 12 3156 G Convolvulus +0.38 12 3156 S Convolvulus arvensis +4.75 150 3156 F Solanaceae +0.03 1 3156 G Capsicum +0.03 1 3156 S Capsicum annuum +0.03 1 3156 G Nicandra +0.03 1 3156 S Nicandra physalodes +4.69 148 3156 G Uncertain taxa +0.13 4 3156 F Uncertain taxa +0.41 13 3156 O Uncertain taxa \ No newline at end of file