diff test-data/strict_anno_stats.txt @ 2:9ca209477dfd draft default tip

planemo upload for repository https://github.com/Onnodg/Naturalis_NLOOR/tree/main/NLOOR_scripts/process_annotations_tool commit 4017d38cf327c48a6252e488ba792527dae97a70-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/strict_anno_stats.txt	Mon Dec 15 16:43:36 2025 +0000
@@ -0,0 +1,41 @@
+Starting processing for FASTA
+=== PARAMETERS USED ===
+uncertain_threshold: 0.95
+eval_threshold: 1e-20
+use_counts: False
+ignore_rank: unknown
+ignore_taxonomy: environmental
+bitscore_perc_cutoff: 0.0
+min_bitscore: 150
+ignore_obiclean_type: singleton
+ignore_illuminapairend_type: pairend
+min_identity: 98
+min_coverage: 95
+ignore_seqids: 
+min_support: 1
+=== END PARAMETERS ===
+Filtered FASTA written succesfully(4682 sequences)
+FASTA: total headers: 4725
+FASTA: headers kept after filters and min_support=1: 4682
+FASTA: removed due to header filters (illumina/obiclean/etc.): 43
+FASTA: removed due to low dereplicated count (<1): 0
+FASTA: total invalid (header filter + low support): 43
+Reading BLAST annotations
+BLAST: total hits read: 38539
+BLAST: hits kept after quality filters: 10244
+BLAST: hits filtered (evalue/coverage/identity/bitscore): 28295
+BLAST: hits removed due to invalid taxon: 0
+BLAST: hits removed due to ignored seqids: 0
+ANNOTATION: total FASTA headers considered: 4682
+ANNOTATION: reads with BLAST hits: 1635
+ANNOTATION: reads without BLAST hits: 3047
+ANNOTATION: unique annotated count (from header counts): 89087
+ANNOTATION: total unique count (from FASTA): 111525
+Header annotations written succesfully
+=== ANNOTATION STATISTICS ===
+percentage_annotated: 34.6031746031746
+annotated_sequences: 1635
+total_sequences: 4725
+percentage_unique_annotated: 79.88074422775162
+unique_annotated: 89087
+total_unique: 111525
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