view test-data/obiclean_taxa.txt @ 2:9ca209477dfd draft default tip

planemo upload for repository https://github.com/Onnodg/Naturalis_NLOOR/tree/main/NLOOR_scripts/process_annotations_tool commit 4017d38cf327c48a6252e488ba792527dae97a70-dirty

Uncertain count per taxonomic level{'K': 0, 'P': 0, 'C': 0, 'O': 12, 'F': 19, 'G': 107, 'S': 406}
percentage_rooted	number_rooted	total_num	taxon_level	identification
100.00	585	585	K	Viridiplantae
100.00	585	585	P	  Streptophyta
100.00	585	585	C	    Magnoliopsida
0.85	5	585	O	      Apiales
0.85	5	585	F	        Apiaceae
0.85	5	585	G	          Uncertain taxa
3.42	20	585	O	      Asterales
3.08	18	585	F	        Asteraceae
0.17	1	585	G	          Matricaria
0.17	1	585	S	            Matricaria chamomilla
2.91	17	585	G	          Uncertain taxa
0.34	2	585	F	        Uncertain taxa
0.17	1	585	O	      Brassicales
0.17	1	585	F	        Brassicaceae
0.17	1	585	G	          Uncertain taxa
1.71	10	585	O	      Caryophyllales
1.71	10	585	F	        Polygonaceae
1.20	7	585	G	          Rumex
1.20	7	585	S	            Uncertain taxa
0.51	3	585	G	          Uncertain taxa
0.17	1	585	O	      Celastrales
0.17	1	585	F	        Celastraceae
0.17	1	585	G	          Euonymus
0.17	1	585	S	            Euonymus europaeus
0.17	1	585	O	      Ericales
0.17	1	585	F	        Primulaceae
0.17	1	585	G	          Uncertain taxa
3.42	20	585	O	      Fabales
3.42	20	585	F	        Fabaceae
2.22	13	585	G	          Trifolium
0.34	2	585	S	            Trifolium arvense
1.88	11	585	S	            Uncertain taxa
0.85	5	585	G	          Uncertain taxa
0.34	2	585	G	          Vicia
0.34	2	585	S	            Vicia faba
2.74	16	585	O	      Fagales
2.22	13	585	F	        Betulaceae
0.17	1	585	G	          Betula
0.17	1	585	S	            Betula pendula
2.05	12	585	G	          Uncertain taxa
0.34	2	585	F	        Fagaceae
0.34	2	585	G	          Quercus
0.34	2	585	S	            Quercus rubra
0.17	1	585	F	        Juglandaceae
0.17	1	585	G	          Juglans
0.17	1	585	S	            Juglans regia
0.17	1	585	O	      Gentianales
0.17	1	585	F	        Apocynaceae
0.17	1	585	G	          Vinca
0.17	1	585	S	            Vinca minor
6.50	38	585	O	      Lamiales
1.54	9	585	F	        Lamiaceae
0.17	1	585	G	          Mentha
0.17	1	585	S	            Uncertain taxa
1.37	8	585	G	          Uncertain taxa
0.34	2	585	F	        Orobanchaceae
0.17	1	585	G	          Orobanche
0.17	1	585	S	            Uncertain taxa
0.17	1	585	G	          Rhinanthus
0.17	1	585	S	            Uncertain taxa
4.44	26	585	F	        Plantaginaceae
4.27	25	585	G	          Plantago
0.34	2	585	S	            Plantago lanceolata
3.93	23	585	S	            Plantago major
0.17	1	585	G	          Veronica
0.17	1	585	S	            Uncertain taxa
0.17	1	585	F	        Uncertain taxa
17.09	100	585	O	      Malpighiales
0.17	1	585	F	        Linaceae
0.17	1	585	G	          Linum
0.17	1	585	S	            Linum usitatissimum
16.92	99	585	F	        Salicaceae
16.92	99	585	G	          Populus
16.92	99	585	S	            Uncertain taxa
4.27	25	585	O	      Poales
4.27	25	585	F	        Poaceae
4.27	25	585	G	          Uncertain taxa
4.10	24	585	O	      Ranunculales
4.10	24	585	F	        Ranunculaceae
4.10	24	585	G	          Ranunculus
4.10	24	585	S	            Uncertain taxa
48.03	281	585	O	      Rosales
0.34	2	585	F	        Cannabaceae
0.34	2	585	G	          Humulus
0.34	2	585	S	            Humulus lupulus
1.71	10	585	F	        Rosaceae
0.17	1	585	G	          Filipendula
0.17	1	585	S	            Filipendula ulmaria
1.54	9	585	G	          Uncertain taxa
44.62	261	585	F	        Ulmaceae
44.62	261	585	G	          Ulmus
44.62	261	585	S	            Uncertain taxa
1.20	7	585	F	        Uncertain taxa
0.17	1	585	F	        Urticaceae
0.17	1	585	G	          Urtica
0.17	1	585	S	            Urtica dioica
5.13	30	585	O	      Solanales
3.59	21	585	F	        Solanaceae
3.59	21	585	G	          Uncertain taxa
1.54	9	585	F	        Uncertain taxa
2.05	12	585	O	      Uncertain taxa